Query psy8370
Match_columns 256
No_of_seqs 199 out of 2389
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 16:55:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 2.1E-35 4.5E-40 219.4 13.0 215 30-246 3-218 (218)
2 PF01209 Ubie_methyltran: ubiE 99.9 2.5E-23 5.4E-28 161.2 9.3 183 27-228 7-219 (233)
3 COG2226 UbiE Methylase involve 99.9 1.8E-22 3.9E-27 154.7 12.8 144 78-226 48-221 (238)
4 PLN02244 tocopherol O-methyltr 99.9 1.7E-21 3.8E-26 159.9 17.1 194 28-229 60-278 (340)
5 PLN02233 ubiquinone biosynthes 99.9 3.6E-21 7.8E-26 152.5 14.7 147 78-229 70-248 (261)
6 PLN02396 hexaprenyldihydroxybe 99.9 8.4E-21 1.8E-25 153.3 16.8 145 80-230 130-290 (322)
7 PTZ00098 phosphoethanolamine N 99.9 3.5E-20 7.5E-25 147.0 17.6 150 77-230 48-203 (263)
8 PRK11207 tellurite resistance 99.9 5.8E-20 1.3E-24 139.8 17.6 141 79-228 28-169 (197)
9 COG2227 UbiG 2-polyprenyl-3-me 99.9 2.5E-21 5.5E-26 145.8 9.2 149 80-234 58-220 (243)
10 PF02353 CMAS: Mycolic acid cy 99.9 2.3E-20 4.9E-25 147.8 14.8 196 26-229 7-217 (273)
11 PRK11036 putative S-adenosyl-L 99.9 5.3E-20 1.2E-24 145.8 16.8 144 80-228 43-206 (255)
12 PF03848 TehB: Tellurite resis 99.8 3.2E-20 7E-25 137.9 13.8 143 78-229 27-169 (192)
13 PF13489 Methyltransf_23: Meth 99.8 4.4E-20 9.6E-25 136.4 14.0 143 66-226 10-160 (161)
14 COG2230 Cfa Cyclopropane fatty 99.8 1.2E-19 2.7E-24 141.4 16.5 198 25-228 16-222 (283)
15 TIGR00477 tehB tellurite resis 99.8 2.1E-19 4.6E-24 136.5 16.7 142 79-229 28-169 (195)
16 TIGR02752 MenG_heptapren 2-hep 99.8 1.6E-19 3.5E-24 141.3 13.7 150 77-231 41-220 (231)
17 PRK12335 tellurite resistance 99.8 5.3E-19 1.1E-23 142.3 16.9 140 81-229 120-259 (287)
18 PRK15068 tRNA mo(5)U34 methylt 99.8 1E-18 2.3E-23 142.1 17.6 147 78-230 119-275 (322)
19 TIGR00452 methyltransferase, p 99.8 1.8E-18 3.9E-23 139.2 17.4 149 75-229 115-273 (314)
20 PRK14103 trans-aconitate 2-met 99.8 5.3E-19 1.2E-23 140.2 13.9 140 77-228 25-183 (255)
21 TIGR03840 TMPT_Se_Te thiopurin 99.8 1.3E-18 2.8E-23 133.2 15.1 141 80-228 33-186 (213)
22 PLN02336 phosphoethanolamine N 99.8 1.2E-18 2.7E-23 150.0 16.7 146 78-228 263-413 (475)
23 PRK15451 tRNA cmo(5)U34 methyl 99.8 4E-19 8.6E-24 140.0 12.2 144 80-228 55-229 (247)
24 PF12847 Methyltransf_18: Meth 99.8 1E-18 2.2E-23 121.2 12.9 106 81-189 1-111 (112)
25 KOG1270|consensus 99.8 3.8E-19 8.2E-24 134.9 11.1 146 82-236 90-256 (282)
26 PF08241 Methyltransf_11: Meth 99.8 5.1E-19 1.1E-23 118.9 10.2 95 86-187 1-95 (95)
27 KOG3178|consensus 99.8 1.8E-18 3.8E-23 137.2 14.7 211 29-250 116-335 (342)
28 smart00828 PKS_MT Methyltransf 99.8 3.3E-18 7.2E-23 133.3 16.1 141 83-229 1-144 (224)
29 PRK13255 thiopurine S-methyltr 99.8 5.5E-18 1.2E-22 130.2 16.5 154 67-229 24-190 (218)
30 TIGR00740 methyltransferase, p 99.8 4.9E-18 1.1E-22 133.5 14.2 143 80-227 52-225 (239)
31 PRK10258 biotin biosynthesis p 99.8 1.2E-17 2.7E-22 132.2 16.5 139 78-226 39-184 (251)
32 PRK11705 cyclopropane fatty ac 99.8 2.6E-17 5.6E-22 136.8 18.8 192 26-228 113-311 (383)
33 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.4E-17 3.1E-22 135.0 16.3 145 80-231 112-258 (340)
34 TIGR02021 BchM-ChlM magnesium 99.8 3.1E-17 6.7E-22 127.3 17.2 144 79-229 53-206 (219)
35 PF13847 Methyltransf_31: Meth 99.8 7.7E-18 1.7E-22 123.2 12.6 107 80-191 2-112 (152)
36 KOG1540|consensus 99.8 6.8E-18 1.5E-22 127.4 12.0 155 67-226 86-278 (296)
37 PF13649 Methyltransf_25: Meth 99.8 2.5E-18 5.5E-23 116.8 8.9 96 85-183 1-101 (101)
38 PLN02585 magnesium protoporphy 99.8 3.7E-17 8E-22 131.8 16.6 140 81-229 144-299 (315)
39 PRK11873 arsM arsenite S-adeno 99.8 2.8E-17 6E-22 131.7 15.8 147 78-229 74-230 (272)
40 PLN02336 phosphoethanolamine N 99.8 4E-17 8.7E-22 140.7 16.8 144 78-226 34-179 (475)
41 PRK07580 Mg-protoporphyrin IX 99.8 8.2E-17 1.8E-21 125.9 17.1 144 79-229 61-214 (230)
42 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 6.9E-17 1.5E-21 125.8 15.4 146 78-229 36-210 (223)
43 KOG2361|consensus 99.7 4.4E-17 9.6E-22 122.1 12.3 201 32-244 31-258 (264)
44 PF05724 TPMT: Thiopurine S-me 99.7 2.1E-17 4.5E-22 126.7 10.8 156 69-233 26-194 (218)
45 PRK01683 trans-aconitate 2-met 99.7 6.6E-17 1.4E-21 128.6 13.6 142 77-228 27-186 (258)
46 TIGR02716 C20_methyl_CrtF C-20 99.7 2.2E-16 4.7E-21 128.6 16.1 147 75-227 143-304 (306)
47 COG2264 PrmA Ribosomal protein 99.7 1.6E-16 3.6E-21 125.1 14.7 149 55-232 142-291 (300)
48 TIGR00537 hemK_rel_arch HemK-r 99.7 6E-16 1.3E-20 116.2 17.1 131 80-231 18-167 (179)
49 PF08003 Methyltransf_9: Prote 99.7 3.4E-16 7.5E-21 122.4 15.6 147 78-229 112-267 (315)
50 TIGR03587 Pse_Me-ase pseudamin 99.7 1.3E-15 2.8E-20 116.1 18.5 106 79-194 41-147 (204)
51 TIGR01983 UbiG ubiquinone bios 99.7 7E-16 1.5E-20 120.2 17.2 147 80-231 44-205 (224)
52 PRK08317 hypothetical protein; 99.7 4.4E-16 9.4E-21 122.6 15.9 150 75-229 13-176 (241)
53 PRK05134 bifunctional 3-demeth 99.7 4.2E-16 9.1E-21 122.1 15.6 146 78-228 45-204 (233)
54 PRK00216 ubiE ubiquinone/menaq 99.7 7.2E-16 1.6E-20 121.3 16.8 146 79-229 49-225 (239)
55 PRK00107 gidB 16S rRNA methylt 99.7 1.5E-15 3.2E-20 113.8 17.5 124 79-228 43-168 (187)
56 COG4976 Predicted methyltransf 99.7 2E-17 4.4E-22 122.8 6.8 154 68-230 113-266 (287)
57 PF08242 Methyltransf_12: Meth 99.7 3E-18 6.5E-23 116.1 2.1 97 86-185 1-99 (99)
58 PRK06202 hypothetical protein; 99.7 4.7E-16 1E-20 121.7 14.5 141 80-228 59-221 (232)
59 COG4106 Tam Trans-aconitate me 99.7 4.1E-17 8.8E-22 120.3 7.4 157 63-234 17-191 (257)
60 TIGR02072 BioC biotin biosynth 99.7 2.4E-16 5.2E-21 124.1 12.2 139 80-227 33-174 (240)
61 PRK13256 thiopurine S-methyltr 99.7 9.2E-16 2E-20 117.4 14.8 141 79-227 41-195 (226)
62 TIGR00138 gidB 16S rRNA methyl 99.7 1.1E-15 2.3E-20 114.4 14.8 123 81-229 42-169 (181)
63 PRK04266 fibrillarin; Provisio 99.7 3.4E-15 7.4E-20 115.3 17.9 152 77-242 68-223 (226)
64 PF06325 PrmA: Ribosomal prote 99.7 3.5E-16 7.6E-21 124.5 12.7 145 56-232 142-286 (295)
65 PF05401 NodS: Nodulation prot 99.7 6.2E-16 1.3E-20 113.7 12.6 153 78-242 40-193 (201)
66 KOG1271|consensus 99.7 2.4E-16 5.1E-21 113.1 9.1 127 83-228 69-204 (227)
67 KOG4300|consensus 99.7 4.9E-16 1.1E-20 113.8 10.7 148 78-229 73-232 (252)
68 PF07021 MetW: Methionine bios 99.7 6.6E-15 1.4E-19 108.1 16.4 146 67-230 5-168 (193)
69 PRK06922 hypothetical protein; 99.7 1.7E-15 3.7E-20 130.4 15.2 110 79-191 416-539 (677)
70 PRK05785 hypothetical protein; 99.7 4.8E-16 1E-20 120.6 10.9 90 81-182 51-140 (226)
71 PRK08287 cobalt-precorrin-6Y C 99.7 3.4E-15 7.4E-20 112.9 15.2 125 78-227 28-154 (187)
72 smart00138 MeTrc Methyltransfe 99.7 1.3E-15 2.7E-20 120.8 12.6 107 79-188 97-241 (264)
73 PRK00517 prmA ribosomal protei 99.7 2.9E-15 6.4E-20 118.2 14.3 122 80-230 118-239 (250)
74 TIGR00406 prmA ribosomal prote 99.7 3.9E-15 8.4E-20 119.8 15.2 125 80-230 158-284 (288)
75 COG4123 Predicted O-methyltran 99.7 6.1E-15 1.3E-19 113.3 15.2 147 68-235 35-200 (248)
76 TIGR02469 CbiT precorrin-6Y C5 99.6 8.3E-15 1.8E-19 103.3 13.7 103 78-188 16-121 (124)
77 TIGR03438 probable methyltrans 99.6 3.2E-14 7E-19 115.2 18.6 108 80-188 62-176 (301)
78 PF05175 MTS: Methyltransferas 99.6 6.7E-15 1.5E-19 109.4 13.2 121 60-188 14-139 (170)
79 PRK00121 trmB tRNA (guanine-N( 99.6 2.1E-15 4.5E-20 115.2 10.7 127 81-225 40-177 (202)
80 TIGR02081 metW methionine bios 99.6 2.2E-14 4.9E-19 109.1 16.1 137 80-230 12-168 (194)
81 PRK14967 putative methyltransf 99.6 3.4E-14 7.4E-19 110.4 16.7 131 78-227 33-182 (223)
82 COG2242 CobL Precorrin-6B meth 99.6 4.8E-14 1E-18 102.9 15.7 149 69-241 22-173 (187)
83 PRK09489 rsmC 16S ribosomal RN 99.6 4E-14 8.6E-19 115.9 15.7 106 80-190 195-304 (342)
84 PTZ00146 fibrillarin; Provisio 99.6 1.6E-13 3.4E-18 108.3 18.1 142 77-236 128-278 (293)
85 PF05219 DREV: DREV methyltran 99.6 5.5E-14 1.2E-18 107.7 14.4 145 81-239 94-250 (265)
86 PRK00377 cbiT cobalt-precorrin 99.6 8.7E-14 1.9E-18 106.1 15.4 132 75-228 34-169 (198)
87 PRK13944 protein-L-isoaspartat 99.6 3.1E-14 6.8E-19 109.0 13.0 102 76-188 67-172 (205)
88 PLN03075 nicotianamine synthas 99.6 3E-14 6.4E-19 112.8 12.9 106 80-189 122-233 (296)
89 PRK15001 SAM-dependent 23S rib 99.6 6.2E-14 1.3E-18 115.5 15.0 125 57-189 208-340 (378)
90 TIGR03534 RF_mod_PrmC protein- 99.6 2.4E-13 5.2E-18 107.8 17.2 129 81-229 87-241 (251)
91 PRK14968 putative methyltransf 99.6 3.5E-13 7.6E-18 102.1 17.3 130 80-229 22-173 (188)
92 PRK13942 protein-L-isoaspartat 99.6 6.2E-14 1.4E-18 107.8 13.0 103 75-188 70-175 (212)
93 TIGR00080 pimt protein-L-isoas 99.6 8.1E-14 1.8E-18 107.7 13.0 102 76-188 72-176 (215)
94 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.9E-14 4.1E-19 109.3 9.0 108 80-188 15-131 (194)
95 TIGR01177 conserved hypothetic 99.5 1.4E-13 3.1E-18 113.0 14.1 130 76-228 177-314 (329)
96 PF06080 DUF938: Protein of un 99.5 1E-12 2.2E-17 98.1 17.0 169 63-240 12-200 (204)
97 TIGR03533 L3_gln_methyl protei 99.5 6.8E-13 1.5E-17 106.4 17.3 127 80-227 120-272 (284)
98 PRK14966 unknown domain/N5-glu 99.5 7E-13 1.5E-17 109.6 17.6 130 81-228 251-404 (423)
99 PRK11088 rrmA 23S rRNA methylt 99.5 1.5E-13 3.3E-18 109.9 12.1 96 80-191 84-183 (272)
100 PF05148 Methyltransf_8: Hypot 99.5 5E-14 1.1E-18 104.4 8.5 138 67-247 62-199 (219)
101 PRK07402 precorrin-6B methylas 99.5 6.4E-13 1.4E-17 101.2 14.8 103 78-189 37-142 (196)
102 PF13659 Methyltransf_26: Meth 99.5 1E-13 2.2E-18 96.7 8.9 107 82-189 1-115 (117)
103 PRK00312 pcm protein-L-isoaspa 99.5 5.6E-13 1.2E-17 102.8 13.3 102 76-189 73-175 (212)
104 PRK09328 N5-glutamine S-adenos 99.5 1.8E-12 3.9E-17 104.2 16.6 130 78-227 105-260 (275)
105 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.8E-12 4E-17 110.5 17.2 157 65-246 282-441 (443)
106 PHA03411 putative methyltransf 99.5 6E-13 1.3E-17 103.9 12.7 129 80-225 63-210 (279)
107 PRK11805 N5-glutamine S-adenos 99.5 2.7E-12 5.9E-17 103.9 16.8 125 82-227 134-284 (307)
108 TIGR03704 PrmC_rel_meth putati 99.5 3.8E-12 8.2E-17 100.3 17.2 129 81-228 86-239 (251)
109 COG2518 Pcm Protein-L-isoaspar 99.5 9.8E-13 2.1E-17 98.3 12.5 104 75-190 66-170 (209)
110 PLN02232 ubiquinone biosynthes 99.5 2.8E-13 6.1E-18 99.6 9.5 117 108-229 1-147 (160)
111 PRK11188 rrmJ 23S rRNA methylt 99.5 2.5E-12 5.5E-17 98.6 15.1 97 79-188 49-164 (209)
112 TIGR00536 hemK_fam HemK family 99.5 4.3E-12 9.3E-17 102.1 16.7 126 83-228 116-268 (284)
113 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.8E-12 4E-17 116.0 15.5 142 61-229 525-680 (702)
114 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.3E-12 2.8E-17 107.3 13.1 109 79-188 120-234 (390)
115 PRK00811 spermidine synthase; 99.5 6.8E-13 1.5E-17 106.4 11.1 107 80-188 75-190 (283)
116 KOG3010|consensus 99.5 2.9E-13 6.4E-18 101.8 7.8 101 84-191 36-138 (261)
117 PF01135 PCMT: Protein-L-isoas 99.4 9.7E-13 2.1E-17 100.2 10.1 110 68-189 60-172 (209)
118 KOG1541|consensus 99.4 3.2E-12 7E-17 94.9 12.3 100 81-188 50-159 (270)
119 PRK15128 23S rRNA m(5)C1962 me 99.4 4.3E-12 9.4E-17 105.9 13.6 107 81-188 220-338 (396)
120 PRK13943 protein-L-isoaspartat 99.4 3.5E-12 7.6E-17 103.3 12.5 104 75-189 74-180 (322)
121 PRK03522 rumB 23S rRNA methylu 99.4 8E-12 1.7E-16 102.0 14.7 141 80-246 172-313 (315)
122 cd02440 AdoMet_MTases S-adenos 99.4 4.5E-12 9.7E-17 86.0 11.1 101 84-188 1-103 (107)
123 PF03291 Pox_MCEL: mRNA cappin 99.4 4.8E-12 1E-16 102.9 13.0 108 81-189 62-186 (331)
124 PF00891 Methyltransf_2: O-met 99.4 5.2E-12 1.1E-16 99.4 12.9 110 75-196 94-206 (241)
125 COG2813 RsmC 16S RNA G1207 met 99.4 8.9E-12 1.9E-16 98.0 13.8 126 57-190 138-267 (300)
126 TIGR00438 rrmJ cell division p 99.4 1.6E-11 3.5E-16 92.9 14.4 99 77-188 28-145 (188)
127 PRK01581 speE spermidine synth 99.4 1.1E-11 2.3E-16 100.6 13.5 150 80-242 149-310 (374)
128 PRK04457 spermidine synthase; 99.4 4E-12 8.7E-17 100.7 10.6 107 80-188 65-176 (262)
129 PRK10901 16S rRNA methyltransf 99.4 3.9E-11 8.5E-16 101.9 17.3 136 78-226 241-398 (427)
130 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.4 4.7E-12 1E-16 98.6 10.6 151 79-229 54-239 (256)
131 COG2890 HemK Methylase of poly 99.4 3.7E-11 8.1E-16 95.9 16.0 124 84-228 113-262 (280)
132 PRK01544 bifunctional N5-gluta 99.4 1.8E-11 4E-16 105.5 14.9 128 81-228 138-292 (506)
133 PF12147 Methyltransf_20: Puta 99.4 9.2E-11 2E-15 91.3 17.0 162 78-242 132-308 (311)
134 PRK14901 16S rRNA methyltransf 99.4 6.9E-11 1.5E-15 100.6 17.7 141 66-225 241-409 (434)
135 KOG2899|consensus 99.4 2E-11 4.3E-16 92.0 12.5 176 78-254 55-285 (288)
136 PLN02781 Probable caffeoyl-CoA 99.3 1.3E-11 2.8E-16 96.2 11.4 114 66-189 57-178 (234)
137 smart00650 rADc Ribosomal RNA 99.3 1.4E-11 2.9E-16 91.7 10.9 104 77-188 9-112 (169)
138 PLN02366 spermidine synthase 99.3 1.2E-10 2.7E-15 93.9 16.8 108 80-188 90-205 (308)
139 PF07942 N2227: N2227-like pro 99.3 1.2E-10 2.6E-15 91.3 16.0 147 79-229 54-242 (270)
140 KOG3045|consensus 99.3 3.6E-11 7.8E-16 91.5 12.5 135 65-244 168-302 (325)
141 PRK03612 spermidine synthase; 99.3 2.2E-11 4.7E-16 105.6 12.3 131 80-223 296-438 (521)
142 COG2263 Predicted RNA methylas 99.3 3E-10 6.5E-15 82.9 16.0 125 78-228 42-167 (198)
143 PRK14904 16S rRNA methyltransf 99.3 1.7E-10 3.6E-15 98.6 17.1 132 78-225 247-402 (445)
144 COG4122 Predicted O-methyltran 99.3 5.8E-11 1.2E-15 90.2 11.8 117 63-189 45-166 (219)
145 TIGR00417 speE spermidine synt 99.3 5.1E-11 1.1E-15 95.2 12.2 107 80-188 71-185 (270)
146 PRK14902 16S rRNA methyltransf 99.3 2E-10 4.3E-15 98.2 16.2 144 66-227 239-406 (444)
147 TIGR02085 meth_trns_rumB 23S r 99.3 1.9E-10 4E-15 96.0 15.6 140 80-245 232-372 (374)
148 PF10294 Methyltransf_16: Puta 99.3 4.8E-11 1E-15 88.8 10.7 124 63-190 21-157 (173)
149 KOG1975|consensus 99.3 2.6E-11 5.5E-16 95.1 9.3 108 80-189 116-237 (389)
150 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.2E-10 2.7E-15 92.6 13.4 109 78-189 68-199 (264)
151 TIGR00563 rsmB ribosomal RNA s 99.3 2.9E-10 6.4E-15 96.6 16.5 142 66-224 227-392 (426)
152 KOG1499|consensus 99.3 4.8E-11 1E-15 95.2 10.8 110 75-187 54-165 (346)
153 PF01739 CheR: CheR methyltran 99.3 3.8E-11 8.3E-16 90.5 9.4 106 80-188 30-174 (196)
154 PLN02672 methionine S-methyltr 99.3 1.6E-10 3.5E-15 106.0 15.1 130 82-229 119-303 (1082)
155 TIGR00479 rumA 23S rRNA (uraci 99.3 9.6E-11 2.1E-15 99.9 12.8 148 65-236 277-427 (431)
156 PRK14903 16S rRNA methyltransf 99.3 3.6E-10 7.7E-15 95.9 15.8 117 66-189 226-366 (431)
157 PF01596 Methyltransf_3: O-met 99.2 3.9E-11 8.4E-16 91.2 8.5 116 66-191 34-157 (205)
158 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.1E-10 4.5E-15 86.9 12.2 105 80-189 52-159 (199)
159 COG1092 Predicted SAM-dependen 99.2 1.4E-10 3.1E-15 95.7 11.4 122 60-189 203-336 (393)
160 PLN02476 O-methyltransferase 99.2 2.2E-10 4.8E-15 90.5 11.7 114 67-190 108-229 (278)
161 KOG2940|consensus 99.2 7E-12 1.5E-16 93.7 3.1 143 80-228 71-226 (325)
162 COG2519 GCD14 tRNA(1-methylade 99.2 3.5E-10 7.7E-15 86.6 12.1 100 78-188 91-194 (256)
163 PHA03412 putative methyltransf 99.2 4.8E-10 1E-14 85.8 11.8 130 81-224 49-197 (241)
164 KOG3191|consensus 99.2 1.1E-08 2.5E-13 74.0 17.0 144 80-242 42-206 (209)
165 TIGR00478 tly hemolysin TlyA f 99.1 1.6E-09 3.4E-14 83.6 13.5 133 80-229 74-217 (228)
166 PRK10611 chemotaxis methyltran 99.1 7.6E-10 1.7E-14 88.1 10.7 106 81-188 115-261 (287)
167 PF10672 Methyltrans_SAM: S-ad 99.1 5.3E-10 1.1E-14 88.8 9.7 123 59-189 108-238 (286)
168 PLN02589 caffeoyl-CoA O-methyl 99.1 8.5E-10 1.8E-14 86.1 10.6 113 66-188 68-189 (247)
169 PF08704 GCD14: tRNA methyltra 99.1 1.6E-09 3.6E-14 84.3 11.6 130 76-228 35-170 (247)
170 PF05185 PRMT5: PRMT5 arginine 99.1 8.4E-10 1.8E-14 93.5 10.2 101 82-186 187-294 (448)
171 COG3963 Phospholipid N-methylt 99.1 2.1E-09 4.6E-14 76.6 10.4 115 69-188 36-155 (194)
172 PRK05031 tRNA (uracil-5-)-meth 99.1 1.7E-09 3.6E-14 89.9 10.6 138 83-246 208-360 (362)
173 KOG3987|consensus 99.0 5.7E-11 1.2E-15 87.4 1.6 141 80-234 111-265 (288)
174 PF09243 Rsm22: Mitochondrial 99.0 5.9E-09 1.3E-13 83.2 13.1 147 66-229 19-168 (274)
175 PF11968 DUF3321: Putative met 99.0 2.9E-09 6.3E-14 79.8 10.4 124 81-229 51-181 (219)
176 KOG2904|consensus 99.0 8.2E-09 1.8E-13 79.5 12.9 129 58-189 126-285 (328)
177 PF02390 Methyltransf_4: Putat 99.0 4.9E-09 1.1E-13 79.4 11.5 104 82-188 18-132 (195)
178 PRK04148 hypothetical protein; 99.0 9.7E-09 2.1E-13 71.8 12.0 95 78-188 13-108 (134)
179 TIGR02143 trmA_only tRNA (urac 99.0 2.9E-09 6.2E-14 88.1 11.1 158 61-246 179-351 (353)
180 KOG1500|consensus 99.0 6.3E-09 1.4E-13 82.4 12.0 109 75-188 171-281 (517)
181 COG1041 Predicted DNA modifica 99.0 1.3E-08 2.9E-13 81.8 13.7 139 69-231 185-332 (347)
182 PRK00274 ksgA 16S ribosomal RN 99.0 2.1E-09 4.6E-14 85.9 8.9 77 75-157 36-112 (272)
183 COG2521 Predicted archaeal met 99.0 1.9E-09 4.1E-14 81.0 7.6 140 77-228 130-276 (287)
184 COG0220 Predicted S-adenosylme 99.0 6.7E-09 1.5E-13 79.9 10.8 106 82-188 49-163 (227)
185 COG1352 CheR Methylase of chem 99.0 1E-08 2.2E-13 80.7 11.9 106 81-189 96-241 (268)
186 TIGR00095 RNA methyltransferas 99.0 5.9E-09 1.3E-13 78.6 10.3 105 80-188 48-158 (189)
187 PLN02823 spermine synthase 99.0 4E-09 8.6E-14 86.1 9.9 106 80-188 102-219 (336)
188 PRK14896 ksgA 16S ribosomal RN 99.0 4.7E-09 1E-13 83.3 10.1 84 69-160 18-101 (258)
189 PTZ00338 dimethyladenosine tra 98.9 7.2E-09 1.6E-13 83.3 9.6 82 69-157 25-108 (294)
190 PF04816 DUF633: Family of unk 98.9 2.6E-08 5.6E-13 75.7 12.0 135 85-244 1-138 (205)
191 KOG3420|consensus 98.9 1.9E-09 4E-14 75.0 4.9 79 78-159 45-123 (185)
192 PF01170 UPF0020: Putative RNA 98.9 3.7E-08 8E-13 73.7 12.0 116 69-187 16-149 (179)
193 COG2520 Predicted methyltransf 98.9 9.4E-08 2E-12 77.5 15.0 143 80-240 187-333 (341)
194 TIGR00755 ksgA dimethyladenosi 98.9 2.4E-08 5.2E-13 79.2 11.4 82 69-158 18-102 (253)
195 PF03602 Cons_hypoth95: Conser 98.9 6.1E-09 1.3E-13 77.9 7.5 107 80-189 41-153 (183)
196 COG2265 TrmA SAM-dependent met 98.9 1.8E-08 4E-13 84.9 10.9 153 59-236 272-427 (432)
197 PF01564 Spermine_synth: Sperm 98.9 3.2E-08 7E-13 77.7 11.5 108 80-188 75-190 (246)
198 PRK11727 23S rRNA mA1618 methy 98.9 4.4E-08 9.5E-13 79.3 12.4 146 81-228 114-291 (321)
199 KOG1661|consensus 98.9 1.8E-08 4E-13 74.7 8.8 99 79-188 80-192 (237)
200 PF02527 GidB: rRNA small subu 98.9 4.7E-08 1E-12 73.0 11.1 138 67-228 34-174 (184)
201 TIGR03439 methyl_EasF probable 98.9 2.9E-07 6.2E-12 74.7 16.5 109 80-188 75-196 (319)
202 COG0421 SpeE Spermidine syntha 98.9 2.2E-08 4.8E-13 79.6 9.7 107 78-188 74-189 (282)
203 PF02475 Met_10: Met-10+ like- 98.9 2.1E-08 4.6E-13 75.8 9.0 97 80-186 100-199 (200)
204 PRK00536 speE spermidine synth 98.8 6.2E-08 1.3E-12 76.1 11.4 96 79-188 70-170 (262)
205 COG3897 Predicted methyltransf 98.8 5.2E-08 1.1E-12 71.5 9.1 116 66-189 64-179 (218)
206 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.6E-08 1.2E-12 80.5 10.2 163 57-247 174-351 (352)
207 PRK04338 N(2),N(2)-dimethylgua 98.8 5.7E-08 1.2E-12 81.0 9.9 98 82-188 58-157 (382)
208 COG1189 Predicted rRNA methyla 98.8 4.4E-07 9.5E-12 69.0 13.6 146 79-233 77-228 (245)
209 KOG3201|consensus 98.8 2.7E-08 5.8E-13 70.6 6.3 153 60-228 8-165 (201)
210 KOG2798|consensus 98.7 2.9E-07 6.3E-12 72.4 12.1 147 79-228 148-336 (369)
211 KOG0820|consensus 98.7 1E-07 2.2E-12 73.5 9.1 83 68-157 46-130 (315)
212 PF08123 DOT1: Histone methyla 98.7 2E-07 4.4E-12 70.9 10.5 117 67-188 29-157 (205)
213 COG0357 GidB Predicted S-adeno 98.7 8E-07 1.7E-11 67.6 13.6 132 82-236 68-201 (215)
214 COG0030 KsgA Dimethyladenosine 98.7 1.3E-07 2.7E-12 73.8 9.2 85 68-157 18-102 (259)
215 COG4798 Predicted methyltransf 98.7 6.8E-07 1.5E-11 65.6 12.1 160 77-244 44-220 (238)
216 PRK01544 bifunctional N5-gluta 98.7 1.6E-07 3.5E-12 81.4 10.5 108 80-188 346-461 (506)
217 PF03141 Methyltransf_29: Puta 98.7 3E-08 6.4E-13 83.1 4.9 99 81-190 117-220 (506)
218 COG0742 N6-adenine-specific me 98.6 5E-07 1.1E-11 66.8 10.1 107 80-189 42-154 (187)
219 PF04672 Methyltransf_19: S-ad 98.6 1.3E-07 2.7E-12 73.9 7.1 163 62-226 49-233 (267)
220 PRK00050 16S rRNA m(4)C1402 me 98.6 2.1E-07 4.5E-12 74.5 6.9 88 69-159 8-99 (296)
221 COG2384 Predicted SAM-dependen 98.5 6.8E-06 1.5E-10 61.9 14.4 147 67-244 8-157 (226)
222 KOG1663|consensus 98.5 1.3E-06 2.7E-11 66.2 10.5 114 66-189 62-183 (237)
223 PRK11933 yebU rRNA (cytosine-C 98.5 1.6E-06 3.5E-11 74.1 12.0 109 78-188 110-241 (470)
224 PF01269 Fibrillarin: Fibrilla 98.5 5.3E-06 1.2E-10 62.8 13.1 149 77-237 69-220 (229)
225 TIGR00308 TRM1 tRNA(guanine-26 98.5 6.8E-07 1.5E-11 74.2 9.2 99 82-188 45-146 (374)
226 KOG1269|consensus 98.5 3E-07 6.5E-12 75.7 6.6 147 79-230 108-268 (364)
227 COG1889 NOP1 Fibrillarin-like 98.5 1.5E-05 3.3E-10 59.1 14.6 148 76-239 71-224 (231)
228 PF01728 FtsJ: FtsJ-like methy 98.5 5E-07 1.1E-11 67.9 7.3 97 81-188 23-138 (181)
229 PF09445 Methyltransf_15: RNA 98.4 7.8E-07 1.7E-11 64.7 6.5 102 83-187 1-119 (163)
230 KOG1709|consensus 98.4 3.5E-06 7.7E-11 63.0 9.8 107 80-189 100-206 (271)
231 KOG2352|consensus 98.4 2.2E-06 4.8E-11 71.8 9.8 108 80-190 46-162 (482)
232 COG4076 Predicted RNA methylas 98.4 5.9E-07 1.3E-11 65.6 5.4 102 81-188 32-134 (252)
233 COG4262 Predicted spermidine s 98.4 7.9E-06 1.7E-10 65.9 11.4 131 80-226 288-433 (508)
234 PF13679 Methyltransf_32: Meth 98.4 6.8E-06 1.5E-10 59.1 10.1 97 65-165 9-114 (141)
235 COG0293 FtsJ 23S rRNA methylas 98.4 2.3E-05 5.1E-10 58.9 13.2 141 78-245 42-199 (205)
236 COG0500 SmtA SAM-dependent met 98.4 1.4E-05 3E-10 58.9 12.3 104 85-194 52-160 (257)
237 KOG2915|consensus 98.4 1.6E-05 3.4E-10 61.7 12.4 104 76-187 100-207 (314)
238 PRK11783 rlmL 23S rRNA m(2)G24 98.4 8.6E-06 1.9E-10 73.7 12.8 113 75-188 183-346 (702)
239 PF02384 N6_Mtase: N-6 DNA Met 98.3 6E-06 1.3E-10 67.6 10.9 121 64-188 33-182 (311)
240 PF00398 RrnaAD: Ribosomal RNA 98.3 4.1E-06 9E-11 66.7 9.5 92 78-177 27-119 (262)
241 COG0116 Predicted N6-adenine-s 98.3 1.9E-05 4.2E-10 64.8 12.0 117 69-188 179-343 (381)
242 KOG1331|consensus 98.3 8.6E-07 1.9E-11 69.2 4.0 98 80-188 44-142 (293)
243 PRK11760 putative 23S rRNA C24 98.2 2.1E-05 4.5E-10 63.7 10.9 72 79-160 209-280 (357)
244 PF03059 NAS: Nicotianamine sy 98.2 2.1E-05 4.6E-10 62.2 10.7 104 81-188 120-229 (276)
245 TIGR02987 met_A_Alw26 type II 98.2 1.8E-05 4E-10 69.4 10.6 76 81-157 31-119 (524)
246 COG4627 Uncharacterized protei 98.1 9.6E-07 2.1E-11 62.4 1.5 82 142-225 41-134 (185)
247 COG0144 Sun tRNA and rRNA cyto 98.1 0.00034 7.5E-09 58.1 16.3 146 66-227 145-315 (355)
248 KOG2187|consensus 98.1 1.4E-05 2.9E-10 67.5 7.6 120 67-192 369-493 (534)
249 PF06962 rRNA_methylase: Putat 98.1 4.9E-05 1.1E-09 53.7 8.8 81 106-189 1-92 (140)
250 TIGR01444 fkbM_fam methyltrans 98.0 2.7E-05 5.8E-10 56.0 7.2 57 84-141 1-59 (143)
251 COG5459 Predicted rRNA methyla 98.0 3.1E-05 6.8E-10 62.2 7.3 128 67-195 100-231 (484)
252 PF07091 FmrO: Ribosomal RNA m 97.9 0.00012 2.7E-09 56.6 9.6 138 79-226 103-241 (251)
253 PF01861 DUF43: Protein of unk 97.8 0.0014 3.1E-08 50.5 14.0 134 80-229 43-178 (243)
254 KOG1501|consensus 97.8 4.7E-05 1E-09 63.0 5.6 97 81-179 66-164 (636)
255 PRK10742 putative methyltransf 97.8 0.0002 4.3E-09 55.6 8.6 82 78-162 83-176 (250)
256 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00048 1E-08 55.5 10.9 138 78-227 82-246 (283)
257 PF03492 Methyltransf_7: SAM d 97.7 0.0015 3.2E-08 53.9 13.4 149 78-228 13-252 (334)
258 PF13578 Methyltransf_24: Meth 97.7 1.6E-05 3.5E-10 54.1 1.6 98 86-188 1-104 (106)
259 TIGR00006 S-adenosyl-methyltra 97.7 0.00027 5.8E-09 57.0 8.2 88 69-158 9-100 (305)
260 PHA01634 hypothetical protein 97.6 0.00043 9.3E-09 47.5 7.5 48 80-127 27-74 (156)
261 cd00315 Cyt_C5_DNA_methylase C 97.6 0.0031 6.7E-08 50.7 13.8 149 84-247 2-164 (275)
262 PF05971 Methyltransf_10: Prot 97.6 0.00091 2E-08 53.7 10.0 94 67-163 87-190 (299)
263 COG4301 Uncharacterized conser 97.5 0.0069 1.5E-07 46.8 13.3 110 78-188 75-192 (321)
264 KOG2730|consensus 97.5 0.00014 3.1E-09 54.7 3.7 75 81-157 94-172 (263)
265 KOG2793|consensus 97.4 0.0012 2.6E-08 51.5 8.9 105 81-188 86-198 (248)
266 KOG4589|consensus 97.4 0.0041 8.9E-08 45.9 10.8 144 79-248 67-227 (232)
267 PLN02668 indole-3-acetate carb 97.4 0.003 6.5E-08 52.7 11.3 147 81-229 63-309 (386)
268 PF03269 DUF268: Caenorhabditi 97.4 0.00043 9.3E-09 49.7 5.3 133 82-228 2-144 (177)
269 PF11599 AviRa: RRNA methyltra 97.4 0.0064 1.4E-07 46.0 11.5 126 61-188 32-213 (246)
270 TIGR00027 mthyl_TIGR00027 meth 97.3 0.012 2.7E-07 46.8 13.8 157 67-227 68-248 (260)
271 PF03141 Methyltransf_29: Puta 97.3 0.00042 9.1E-09 58.7 4.8 125 80-229 364-491 (506)
272 PF06859 Bin3: Bicoid-interact 97.2 4.6E-05 1E-09 51.0 -0.8 79 150-228 1-91 (110)
273 KOG4058|consensus 97.2 0.0082 1.8E-07 42.5 9.6 111 67-188 59-171 (199)
274 COG1565 Uncharacterized conser 97.1 0.0041 9E-08 50.8 8.5 53 75-127 71-132 (370)
275 KOG1596|consensus 97.0 0.0046 9.9E-08 47.5 7.4 103 76-188 151-260 (317)
276 KOG3115|consensus 97.0 0.0021 4.6E-08 48.0 5.4 48 80-127 59-107 (249)
277 PRK01747 mnmC bifunctional tRN 96.9 0.0068 1.5E-07 55.0 9.7 127 80-227 56-225 (662)
278 KOG1562|consensus 96.9 0.0041 8.9E-08 49.3 6.9 109 79-188 119-235 (337)
279 KOG0822|consensus 96.9 0.0036 7.9E-08 53.4 6.7 103 82-187 368-476 (649)
280 COG0275 Predicted S-adenosylme 96.8 0.0084 1.8E-07 47.8 8.1 88 68-157 11-103 (314)
281 COG0286 HsdM Type I restrictio 96.8 0.15 3.2E-06 44.6 16.1 121 63-188 172-325 (489)
282 KOG2920|consensus 96.8 0.0018 4E-08 51.0 4.1 108 79-188 114-233 (282)
283 PF04989 CmcI: Cephalosporin h 96.7 0.0028 6E-08 48.0 4.7 140 81-225 32-186 (206)
284 PF07757 AdoMet_MTase: Predict 96.7 0.0032 6.9E-08 42.0 4.3 46 67-113 44-89 (112)
285 KOG1122|consensus 96.7 0.093 2E-06 43.9 13.5 110 78-188 238-370 (460)
286 PF04445 SAM_MT: Putative SAM- 96.6 0.0085 1.9E-07 46.4 6.9 77 83-162 77-163 (234)
287 PF02005 TRM: N2,N2-dimethylgu 96.6 0.0097 2.1E-07 49.9 7.7 101 81-189 49-154 (377)
288 COG1064 AdhP Zn-dependent alco 96.6 0.016 3.4E-07 47.5 8.7 97 77-191 162-261 (339)
289 COG0270 Dcm Site-specific DNA 96.6 0.018 3.8E-07 47.6 8.8 148 82-244 3-165 (328)
290 KOG1227|consensus 96.6 0.0023 4.9E-08 50.8 3.2 105 81-195 194-303 (351)
291 TIGR00675 dcm DNA-methyltransf 96.5 0.048 1E-06 44.8 11.1 146 85-246 1-160 (315)
292 PF02636 Methyltransf_28: Puta 96.5 0.0098 2.1E-07 47.2 6.7 77 80-164 17-109 (252)
293 KOG2651|consensus 96.5 0.009 1.9E-07 49.0 6.1 57 67-123 139-195 (476)
294 PRK11524 putative methyltransf 96.2 0.02 4.4E-07 46.2 7.0 58 66-126 195-252 (284)
295 PF00145 DNA_methylase: C-5 cy 96.2 0.052 1.1E-06 44.7 9.5 150 84-249 2-165 (335)
296 KOG2539|consensus 96.1 0.035 7.5E-07 47.0 8.1 115 78-193 197-319 (491)
297 PF01795 Methyltransf_5: MraW 96.1 0.0084 1.8E-07 48.5 4.1 79 78-157 17-100 (310)
298 PF01555 N6_N4_Mtase: DNA meth 96.0 0.023 5E-07 44.0 6.5 53 67-122 179-231 (231)
299 PRK13699 putative methylase; P 95.9 0.047 1E-06 42.6 7.4 58 67-127 151-208 (227)
300 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.046 1E-06 44.9 7.4 100 82-189 53-154 (380)
301 PF10354 DUF2431: Domain of un 95.8 0.26 5.6E-06 36.4 10.5 136 88-239 3-159 (166)
302 PRK09424 pntA NAD(P) transhydr 95.5 0.18 3.9E-06 44.1 10.2 100 79-189 162-285 (509)
303 PRK10458 DNA cytosine methylas 95.3 1 2.2E-05 39.1 14.1 154 82-247 88-288 (467)
304 PF11312 DUF3115: Protein of u 95.2 0.1 2.3E-06 42.1 7.3 113 82-195 87-248 (315)
305 PF11899 DUF3419: Protein of u 95.1 0.059 1.3E-06 45.3 6.0 61 129-190 275-335 (380)
306 COG3315 O-Methyltransferase in 94.9 0.4 8.7E-06 39.0 9.9 143 82-227 93-262 (297)
307 COG1568 Predicted methyltransf 94.8 0.28 6E-06 38.9 8.3 131 80-228 151-287 (354)
308 PF05430 Methyltransf_30: S-ad 94.7 0.021 4.6E-07 39.8 1.9 76 133-228 34-110 (124)
309 PRK09880 L-idonate 5-dehydroge 94.6 0.14 3E-06 42.6 7.0 98 79-189 167-266 (343)
310 KOG0821|consensus 94.6 0.11 2.4E-06 39.7 5.6 66 75-141 44-109 (326)
311 COG1063 Tdh Threonine dehydrog 94.5 0.42 9.1E-06 39.9 9.5 102 79-191 166-271 (350)
312 cd08283 FDH_like_1 Glutathione 94.4 0.29 6.3E-06 41.4 8.6 109 78-189 181-306 (386)
313 PF05711 TylF: Macrocin-O-meth 94.4 0.5 1.1E-05 37.3 9.1 128 78-224 71-233 (248)
314 PRK13699 putative methylase; P 94.4 0.18 3.8E-06 39.3 6.6 43 168-226 51-93 (227)
315 KOG2198|consensus 94.2 2.7 5.9E-05 34.9 13.2 110 78-189 152-296 (375)
316 KOG2078|consensus 94.2 0.028 6E-07 47.0 1.8 63 79-143 247-312 (495)
317 PF04072 LCM: Leucine carboxyl 94.1 0.11 2.3E-06 39.1 4.8 92 82-175 79-182 (183)
318 PTZ00357 methyltransferase; Pr 94.1 0.28 6.1E-06 43.9 7.7 101 83-184 702-830 (1072)
319 COG3129 Predicted SAM-dependen 94.1 0.3 6.4E-06 37.7 6.9 95 67-163 62-166 (292)
320 COG1255 Uncharacterized protei 94.0 0.74 1.6E-05 31.3 7.9 88 81-188 13-101 (129)
321 PF03514 GRAS: GRAS domain fam 93.9 0.84 1.8E-05 38.5 10.2 109 78-188 107-243 (374)
322 KOG1201|consensus 93.8 0.58 1.3E-05 37.6 8.5 78 79-159 35-123 (300)
323 KOG0024|consensus 93.8 0.22 4.8E-06 40.4 6.2 107 75-190 163-274 (354)
324 KOG3924|consensus 93.8 0.24 5.1E-06 41.2 6.4 121 67-192 179-311 (419)
325 cd08254 hydroxyacyl_CoA_DH 6-h 93.7 0.73 1.6E-05 37.9 9.5 95 78-188 162-262 (338)
326 TIGR00561 pntA NAD(P) transhyd 93.3 0.38 8.3E-06 42.1 7.3 99 80-187 162-282 (511)
327 KOG2352|consensus 93.0 0.23 5.1E-06 42.5 5.3 109 80-189 294-416 (482)
328 KOG2671|consensus 92.7 0.2 4.4E-06 40.9 4.5 114 77-192 204-357 (421)
329 COG3510 CmcI Cephalosporin hyd 92.4 1.1 2.4E-05 33.6 7.5 108 80-194 68-185 (237)
330 KOG1099|consensus 92.2 0.51 1.1E-05 36.4 5.7 97 80-187 40-161 (294)
331 PRK07109 short chain dehydroge 91.8 2.7 5.8E-05 34.9 10.3 77 81-159 7-94 (334)
332 cd08237 ribitol-5-phosphate_DH 91.7 1.5 3.3E-05 36.4 8.7 93 79-189 161-256 (341)
333 PRK05786 fabG 3-ketoacyl-(acyl 91.7 2.5 5.4E-05 32.7 9.6 107 81-190 4-136 (238)
334 PRK07533 enoyl-(acyl carrier p 91.6 3.7 8E-05 32.5 10.6 105 81-188 9-147 (258)
335 PRK07417 arogenate dehydrogena 91.4 1.9 4.1E-05 34.7 8.8 85 84-186 2-88 (279)
336 PRK06701 short chain dehydroge 91.4 2.4 5.1E-05 34.3 9.4 107 81-189 45-181 (290)
337 PRK08085 gluconate 5-dehydroge 91.4 4 8.7E-05 32.0 10.6 77 81-159 8-95 (254)
338 PF02254 TrkA_N: TrkA-N domain 91.3 1.2 2.5E-05 30.4 6.5 105 90-225 4-113 (116)
339 cd05213 NAD_bind_Glutamyl_tRNA 91.3 4.1 8.9E-05 33.5 10.7 125 80-219 176-302 (311)
340 PRK07576 short chain dehydroge 91.1 2.9 6.3E-05 33.2 9.6 76 81-158 8-94 (264)
341 COG0686 Ald Alanine dehydrogen 90.9 0.81 1.8E-05 37.1 5.9 102 79-188 165-267 (371)
342 PF00107 ADH_zinc_N: Zinc-bind 90.8 0.64 1.4E-05 32.4 5.0 88 91-192 1-92 (130)
343 PF03686 UPF0146: Uncharacteri 90.7 0.61 1.3E-05 32.4 4.5 88 81-188 13-101 (127)
344 cd05188 MDR Medium chain reduc 90.4 2 4.4E-05 33.7 8.1 98 79-189 132-232 (271)
345 TIGR01202 bchC 2-desacetyl-2-h 90.4 1.7 3.7E-05 35.5 7.7 86 81-189 144-231 (308)
346 PRK08277 D-mannonate oxidoredu 90.3 5.1 0.00011 32.0 10.4 77 81-159 9-96 (278)
347 cd08230 glucose_DH Glucose deh 90.2 1.4 3E-05 36.7 7.3 96 79-190 170-270 (355)
348 PRK09242 tropinone reductase; 90.1 6 0.00013 31.1 10.5 77 81-159 8-97 (257)
349 TIGR02822 adh_fam_2 zinc-bindi 90.1 4.5 9.7E-05 33.4 10.1 93 77-190 161-255 (329)
350 PRK12939 short chain dehydroge 90.1 4.4 9.5E-05 31.6 9.7 76 81-159 6-93 (250)
351 PRK07985 oxidoreductase; Provi 89.9 5.4 0.00012 32.3 10.3 106 81-188 48-184 (294)
352 PF07279 DUF1442: Protein of u 89.8 7.6 0.00017 29.8 11.6 115 66-193 30-152 (218)
353 PRK06139 short chain dehydroge 89.7 3.3 7.1E-05 34.3 8.9 77 81-159 6-93 (330)
354 PRK07502 cyclohexadienyl dehyd 89.6 3.3 7.2E-05 33.9 8.9 90 82-187 6-98 (307)
355 PRK08265 short chain dehydroge 89.4 5.1 0.00011 31.7 9.6 74 81-159 5-89 (261)
356 cd08232 idonate-5-DH L-idonate 89.3 1.3 2.8E-05 36.5 6.4 92 81-188 165-261 (339)
357 TIGR00872 gnd_rel 6-phosphoglu 89.2 6.1 0.00013 32.2 10.1 87 84-186 2-90 (298)
358 TIGR03366 HpnZ_proposed putati 89.0 1.5 3.2E-05 35.2 6.3 98 79-190 118-219 (280)
359 PRK11524 putative methyltransf 88.9 0.68 1.5E-05 37.4 4.3 56 133-188 10-79 (284)
360 KOG1253|consensus 88.7 0.24 5.2E-06 42.4 1.6 104 80-189 108-216 (525)
361 PF02153 PDH: Prephenate dehyd 88.7 3.6 7.8E-05 32.8 8.2 76 96-188 2-78 (258)
362 PRK12937 short chain dehydroge 88.6 7.7 0.00017 30.1 10.1 107 81-189 4-139 (245)
363 PRK07814 short chain dehydroge 88.6 5.1 0.00011 31.7 9.1 76 81-158 9-95 (263)
364 COG0373 HemA Glutamyl-tRNA red 88.5 15 0.00032 31.5 11.9 125 78-219 174-303 (414)
365 PRK07806 short chain dehydroge 88.5 8.1 0.00018 30.1 10.2 106 81-188 5-133 (248)
366 PF07109 Mg-por_mtran_C: Magne 88.3 3 6.5E-05 27.6 6.1 72 157-230 2-83 (97)
367 PF11899 DUF3419: Protein of u 88.3 1.7 3.8E-05 36.6 6.4 46 78-124 32-77 (380)
368 PRK06128 oxidoreductase; Provi 88.1 9.5 0.00021 30.9 10.6 106 81-188 54-190 (300)
369 PLN03154 putative allyl alcoho 88.1 4 8.6E-05 34.0 8.5 98 78-189 155-258 (348)
370 PRK08324 short chain dehydroge 88.0 3.9 8.5E-05 37.6 9.0 106 81-189 421-557 (681)
371 cd00401 AdoHcyase S-adenosyl-L 87.9 3.5 7.5E-05 35.3 7.9 87 80-189 200-289 (413)
372 PRK05872 short chain dehydroge 87.8 7.4 0.00016 31.5 9.7 77 81-160 8-95 (296)
373 TIGR02825 B4_12hDH leukotriene 87.5 11 0.00024 30.9 10.8 98 77-189 134-237 (325)
374 PRK07819 3-hydroxybutyryl-CoA 87.3 8.9 0.00019 31.1 9.7 95 83-187 6-119 (286)
375 COG0287 TyrA Prephenate dehydr 87.2 5.5 0.00012 32.2 8.4 89 82-186 3-95 (279)
376 COG5379 BtaA S-adenosylmethion 87.2 1.8 3.9E-05 34.8 5.4 75 110-189 292-366 (414)
377 COG0604 Qor NADPH:quinone redu 87.2 3.3 7.2E-05 34.3 7.4 104 77-192 138-244 (326)
378 PRK12744 short chain dehydroge 86.9 11 0.00023 29.7 10.0 105 81-187 7-143 (257)
379 TIGR03451 mycoS_dep_FDH mycoth 86.6 7.3 0.00016 32.5 9.3 99 77-189 172-276 (358)
380 COG2933 Predicted SAM-dependen 86.6 3.4 7.3E-05 32.8 6.5 72 78-159 208-279 (358)
381 PRK12823 benD 1,6-dihydroxycyc 86.5 14 0.0003 29.1 10.5 76 81-159 7-93 (260)
382 PRK06505 enoyl-(acyl carrier p 86.4 13 0.00029 29.6 10.4 77 81-160 6-95 (271)
383 cd08281 liver_ADH_like1 Zinc-d 86.2 1.8 4E-05 36.3 5.6 98 77-189 187-290 (371)
384 PRK07984 enoyl-(acyl carrier p 86.1 15 0.00032 29.2 10.4 76 81-159 5-93 (262)
385 PF01488 Shikimate_DH: Shikima 86.0 3.4 7.3E-05 29.2 6.0 75 79-160 9-85 (135)
386 KOG2912|consensus 85.9 2.7 5.8E-05 34.3 5.8 91 65-157 85-185 (419)
387 TIGR00518 alaDH alanine dehydr 85.8 1.3 2.9E-05 37.3 4.4 99 81-188 166-266 (370)
388 PF05050 Methyltransf_21: Meth 85.8 2 4.4E-05 31.1 5.0 37 87-123 1-42 (167)
389 PRK07832 short chain dehydroge 85.8 15 0.00033 29.1 10.4 75 84-159 2-87 (272)
390 PRK06035 3-hydroxyacyl-CoA deh 85.6 8.2 0.00018 31.3 8.9 94 83-186 4-118 (291)
391 PF05206 TRM13: Methyltransfer 85.6 3.2 6.9E-05 33.1 6.2 63 79-143 16-86 (259)
392 TIGR00497 hsdM type I restrict 85.6 21 0.00046 31.5 11.9 105 81-188 217-354 (501)
393 COG0541 Ffh Signal recognition 85.2 5.9 0.00013 33.9 7.8 108 80-190 98-222 (451)
394 PRK05708 2-dehydropantoate 2-r 85.2 8.7 0.00019 31.4 8.8 97 83-190 3-105 (305)
395 PRK12743 oxidoreductase; Provi 85.0 14 0.0003 29.1 9.7 76 82-159 2-89 (256)
396 PRK05867 short chain dehydroge 84.9 5.7 0.00012 31.2 7.5 77 81-159 8-95 (253)
397 cd08294 leukotriene_B4_DH_like 84.9 6.5 0.00014 32.1 8.1 96 77-188 139-240 (329)
398 PRK07791 short chain dehydroge 84.7 9 0.0002 30.9 8.7 77 81-159 5-101 (286)
399 PRK07890 short chain dehydroge 84.6 7.3 0.00016 30.5 8.1 77 81-159 4-91 (258)
400 cd08245 CAD Cinnamyl alcohol d 84.6 8.5 0.00019 31.5 8.7 97 77-189 158-256 (330)
401 cd08234 threonine_DH_like L-th 84.4 11 0.00023 31.0 9.2 97 77-189 155-257 (334)
402 cd08255 2-desacetyl-2-hydroxye 84.4 11 0.00023 30.0 9.0 95 77-188 93-189 (277)
403 PRK08306 dipicolinate synthase 84.3 5.6 0.00012 32.4 7.3 87 81-187 151-239 (296)
404 cd08239 THR_DH_like L-threonin 84.0 3.7 8.1E-05 33.9 6.3 98 78-189 160-262 (339)
405 PRK03659 glutathione-regulated 83.8 12 0.00027 33.9 9.8 91 83-188 401-497 (601)
406 PRK08594 enoyl-(acyl carrier p 83.7 19 0.0004 28.5 9.9 105 81-189 6-147 (257)
407 PRK08507 prephenate dehydrogen 83.5 10 0.00022 30.5 8.4 84 84-186 2-88 (275)
408 PF14740 DUF4471: Domain of un 83.2 0.81 1.8E-05 36.9 2.0 66 148-226 220-286 (289)
409 PRK08293 3-hydroxybutyryl-CoA 83.2 7.8 0.00017 31.4 7.7 95 83-186 4-117 (287)
410 PRK05875 short chain dehydroge 83.2 21 0.00046 28.3 10.7 76 81-158 6-94 (276)
411 PRK08415 enoyl-(acyl carrier p 83.1 22 0.00048 28.5 10.6 106 81-189 4-143 (274)
412 PLN02827 Alcohol dehydrogenase 83.1 3 6.6E-05 35.2 5.5 98 78-189 190-295 (378)
413 PRK06172 short chain dehydroge 83.0 8.9 0.00019 30.0 7.9 77 81-159 6-93 (253)
414 PRK06124 gluconate 5-dehydroge 82.8 9.3 0.0002 30.0 8.0 77 81-159 10-97 (256)
415 PF03446 NAD_binding_2: NAD bi 82.8 13 0.00027 27.2 8.1 113 84-228 3-119 (163)
416 PRK06079 enoyl-(acyl carrier p 82.7 17 0.00036 28.6 9.3 104 81-189 6-143 (252)
417 PRK11730 fadB multifunctional 82.6 11 0.00024 35.0 9.1 95 83-187 314-426 (715)
418 PRK05876 short chain dehydroge 82.5 8.7 0.00019 30.8 7.7 77 81-159 5-92 (275)
419 PRK05808 3-hydroxybutyryl-CoA 82.5 5.4 0.00012 32.2 6.5 94 83-186 4-115 (282)
420 cd08295 double_bond_reductase_ 82.3 11 0.00023 31.2 8.4 97 77-188 147-250 (338)
421 PRK07454 short chain dehydroge 82.1 12 0.00026 29.0 8.3 76 81-159 5-92 (241)
422 COG0863 DNA modification methy 82.0 8.3 0.00018 31.2 7.6 60 65-127 208-267 (302)
423 PRK10309 galactitol-1-phosphat 81.9 5.3 0.00012 33.1 6.5 98 78-189 157-260 (347)
424 PRK07677 short chain dehydroge 81.8 9.6 0.00021 29.8 7.7 74 83-158 2-86 (252)
425 cd05285 sorbitol_DH Sorbitol d 81.8 11 0.00024 31.1 8.4 99 76-188 157-264 (343)
426 PRK06522 2-dehydropantoate 2-r 81.8 11 0.00024 30.6 8.2 92 84-188 2-99 (304)
427 PRK12490 6-phosphogluconate de 81.5 27 0.00059 28.4 10.4 113 84-226 2-117 (299)
428 PRK06914 short chain dehydroge 81.5 25 0.00054 28.0 10.6 76 82-159 3-90 (280)
429 cd08285 NADP_ADH NADP(H)-depen 81.4 17 0.00037 30.1 9.3 99 77-189 162-266 (351)
430 PF11253 DUF3052: Protein of u 81.3 15 0.00033 25.6 7.3 68 150-230 45-112 (127)
431 PLN02740 Alcohol dehydrogenase 81.3 3.6 7.9E-05 34.7 5.3 98 77-189 194-300 (381)
432 PRK08340 glucose-1-dehydrogena 81.1 7.1 0.00015 30.8 6.7 73 84-159 2-85 (259)
433 cd08261 Zn_ADH7 Alcohol dehydr 81.1 5.1 0.00011 33.0 6.1 101 77-188 155-257 (337)
434 PRK07035 short chain dehydroge 81.1 11 0.00023 29.5 7.7 77 81-159 7-94 (252)
435 PRK07097 gluconate 5-dehydroge 81.1 11 0.00024 29.8 7.8 78 81-160 9-97 (265)
436 TIGR02356 adenyl_thiF thiazole 81.0 3.5 7.6E-05 31.5 4.7 33 81-113 20-54 (202)
437 PRK06484 short chain dehydroge 81.0 17 0.00037 32.0 9.7 104 81-189 268-400 (520)
438 PRK06113 7-alpha-hydroxysteroi 80.9 11 0.00024 29.5 7.7 77 81-159 10-97 (255)
439 PRK07063 short chain dehydroge 80.9 11 0.00023 29.7 7.7 77 81-159 6-95 (260)
440 cd08293 PTGR2 Prostaglandin re 80.8 6.1 0.00013 32.6 6.5 91 83-188 156-253 (345)
441 cd01065 NAD_bind_Shikimate_DH 80.7 17 0.00037 26.0 8.1 72 80-159 17-90 (155)
442 PRK05866 short chain dehydroge 80.5 12 0.00025 30.4 7.8 76 82-159 40-126 (293)
443 PLN02586 probable cinnamyl alc 80.4 6.9 0.00015 32.8 6.7 96 79-189 181-278 (360)
444 PRK08339 short chain dehydroge 80.4 13 0.00028 29.5 7.9 77 81-159 7-94 (263)
445 PRK07478 short chain dehydroge 80.4 13 0.00027 29.2 7.9 77 81-159 5-92 (254)
446 PRK08303 short chain dehydroge 80.2 9 0.00019 31.3 7.1 76 81-158 7-103 (305)
447 PRK06500 short chain dehydroge 80.2 24 0.00053 27.3 9.5 73 81-158 5-88 (249)
448 cd08238 sorbose_phosphate_red 80.1 13 0.00028 31.8 8.3 102 78-188 172-287 (410)
449 PRK05855 short chain dehydroge 80.1 12 0.00027 33.3 8.6 78 81-160 314-402 (582)
450 PRK05854 short chain dehydroge 80.0 9.5 0.00021 31.2 7.3 77 81-159 13-102 (313)
451 cd05278 FDH_like Formaldehyde 79.8 29 0.00063 28.6 10.2 97 78-188 164-266 (347)
452 PRK07530 3-hydroxybutyryl-CoA 79.8 31 0.00066 27.9 10.2 94 83-186 5-116 (292)
453 PRK06194 hypothetical protein; 79.8 11 0.00025 30.1 7.6 77 82-160 6-93 (287)
454 PRK08217 fabG 3-ketoacyl-(acyl 79.8 13 0.00028 28.9 7.8 77 81-159 4-91 (253)
455 PRK12481 2-deoxy-D-gluconate 3 79.7 7.6 0.00016 30.5 6.4 75 81-159 7-92 (251)
456 TIGR02354 thiF_fam2 thiamine b 79.7 9.7 0.00021 29.0 6.7 33 81-113 20-54 (200)
457 PTZ00142 6-phosphogluconate de 79.7 26 0.00057 30.7 10.0 95 84-187 3-99 (470)
458 PRK09599 6-phosphogluconate de 79.7 32 0.00069 28.0 10.7 114 84-226 2-117 (301)
459 PRK08862 short chain dehydroge 79.5 13 0.00028 28.8 7.5 76 81-158 4-91 (227)
460 PRK06484 short chain dehydroge 79.4 23 0.0005 31.3 9.9 74 81-159 4-88 (520)
461 PRK12548 shikimate 5-dehydroge 79.4 23 0.00049 28.8 9.1 81 80-162 124-211 (289)
462 PRK11154 fadJ multifunctional 79.1 18 0.00039 33.6 9.3 97 82-188 309-424 (708)
463 KOG1205|consensus 79.0 33 0.00071 27.8 9.9 112 81-194 11-154 (282)
464 cd01487 E1_ThiF_like E1_ThiF_l 79.0 16 0.00035 27.1 7.5 31 84-114 1-33 (174)
465 COG5379 BtaA S-adenosylmethion 78.8 6.3 0.00014 31.9 5.4 46 79-125 61-106 (414)
466 PRK07523 gluconate 5-dehydroge 78.8 13 0.00029 29.0 7.6 77 81-159 9-96 (255)
467 PRK07370 enoyl-(acyl carrier p 78.8 29 0.00063 27.4 9.5 106 81-189 5-147 (258)
468 PLN02545 3-hydroxybutyryl-CoA 78.7 21 0.00045 29.0 8.8 93 83-186 5-116 (295)
469 PRK09072 short chain dehydroge 78.6 14 0.0003 29.1 7.7 76 81-159 4-89 (263)
470 PF00106 adh_short: short chai 78.1 11 0.00023 27.2 6.4 75 84-159 2-89 (167)
471 TIGR00936 ahcY adenosylhomocys 77.9 15 0.00032 31.5 7.8 86 80-188 193-281 (406)
472 PRK08213 gluconate 5-dehydroge 77.6 16 0.00035 28.7 7.8 76 81-159 11-98 (259)
473 PRK03562 glutathione-regulated 77.5 20 0.00043 32.7 9.0 94 82-188 400-497 (621)
474 PRK06200 2,3-dihydroxy-2,3-dih 77.4 11 0.00024 29.7 6.8 74 81-159 5-89 (263)
475 PRK08643 acetoin reductase; Va 77.4 16 0.00035 28.5 7.7 74 83-158 3-87 (256)
476 PRK12826 3-ketoacyl-(acyl-carr 76.8 21 0.00044 27.7 8.1 77 81-159 5-92 (251)
477 PRK08223 hypothetical protein; 76.7 19 0.00042 29.2 7.7 34 81-114 26-61 (287)
478 TIGR02437 FadB fatty oxidation 76.6 25 0.00053 32.7 9.4 98 81-188 312-427 (714)
479 PRK08644 thiamine biosynthesis 76.5 18 0.00038 27.9 7.4 33 81-113 27-61 (212)
480 TIGR03206 benzo_BadH 2-hydroxy 76.5 18 0.0004 28.0 7.8 76 82-159 3-89 (250)
481 PLN02256 arogenate dehydrogena 76.4 29 0.00062 28.5 8.9 89 78-185 32-123 (304)
482 PF12692 Methyltransf_17: S-ad 76.4 12 0.00026 27.0 5.7 101 82-189 29-134 (160)
483 TIGR02818 adh_III_F_hyde S-(hy 76.3 7.7 0.00017 32.6 5.8 99 77-190 181-288 (368)
484 PRK12921 2-dehydropantoate 2-r 76.3 28 0.00061 28.2 9.0 92 84-188 2-101 (305)
485 PRK13394 3-hydroxybutyrate deh 76.2 18 0.00039 28.4 7.7 77 81-159 6-93 (262)
486 cd08236 sugar_DH NAD(P)-depend 75.6 11 0.00024 31.0 6.5 98 78-189 156-258 (343)
487 PRK06181 short chain dehydroge 75.3 19 0.00041 28.3 7.6 75 83-159 2-87 (263)
488 PF02737 3HCDH_N: 3-hydroxyacy 75.3 9.6 0.00021 28.5 5.5 95 84-188 1-113 (180)
489 TIGR01832 kduD 2-deoxy-D-gluco 75.2 15 0.00033 28.5 7.0 75 81-159 4-89 (248)
490 PRK08063 enoyl-(acyl carrier p 75.2 33 0.00071 26.6 8.9 76 82-159 4-91 (250)
491 PF02558 ApbA: Ketopantoate re 75.2 21 0.00045 25.4 7.2 35 149-188 66-100 (151)
492 PRK08589 short chain dehydroge 75.1 19 0.00041 28.7 7.5 76 81-159 5-91 (272)
493 PLN02712 arogenate dehydrogena 75.1 33 0.00072 31.6 9.7 86 80-184 50-138 (667)
494 COG1086 Predicted nucleoside-d 75.0 14 0.00029 32.9 6.9 83 81-165 249-340 (588)
495 PRK06949 short chain dehydroge 74.9 21 0.00044 28.0 7.7 78 80-159 7-95 (258)
496 PRK05693 short chain dehydroge 74.9 32 0.00069 27.3 8.8 69 83-159 2-81 (274)
497 PRK11064 wecC UDP-N-acetyl-D-m 74.8 19 0.00041 31.0 7.8 96 83-188 4-118 (415)
498 TIGR02441 fa_ox_alpha_mit fatt 74.8 23 0.00049 33.1 8.7 96 83-188 336-449 (737)
499 PRK07889 enoyl-(acyl carrier p 74.7 40 0.00086 26.5 9.4 103 81-188 6-144 (256)
500 PLN02514 cinnamyl-alcohol dehy 74.7 17 0.00037 30.4 7.4 96 80-190 179-276 (357)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=2.1e-35 Score=219.41 Aligned_cols=215 Identities=49% Similarity=0.832 Sum_probs=176.2
Q ss_pred cchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhcc-CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEE
Q psy8370 30 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQK-KSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 108 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~ 108 (256)
..||..+.+||+..+++.++|+|+|++.+..|+..++.||.++.... .......+.||.|+|-|+.+..++...+.+|.
T Consensus 3 ~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VD 82 (218)
T PF05891_consen 3 KIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVD 82 (218)
T ss_dssp CHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEE
T ss_pred ccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeE
Confidence 56899999999999999999999999999999999999999988321 12345789999999999999998888888999
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 109 LLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 109 ~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.||+.+..++.|++.+.....++..+++..+.++.|... +||+|++.+++.|++++++..+|++|.+.|+|+|.+++-
T Consensus 83 lVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~--~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 83 LVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEG--KYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT---EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCC--cEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999999999999987765334555889999999988766 899999999999999999999999999999999999999
Q ss_pred ecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 189 DNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
++....+...++...+++.|+.+.++++|+++|++++..+.|.++|.++||+.||+||
T Consensus 161 EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~pV~myaLr 218 (218)
T PF05891_consen 161 ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYPVRMYALR 218 (218)
T ss_dssp EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-EEEEEEEE
T ss_pred ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceEEEEEEeC
Confidence 9999888777899999999999999999999999999999999999999999999986
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=2.5e-23 Score=161.17 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-C-
Q psy8370 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-F- 104 (256)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~- 104 (256)
+.....|+.....|+....-.. +|.. ..+++.+.+.. ...++.+|||+|||||.++..+++.. .
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls--~g~~--------~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~ 72 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLS--FGQD--------RRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPN 72 (233)
T ss_dssp ----------------------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS--
T ss_pred HHHHHHHHHHHHHhCCCccccC--CcHH--------HHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCc
Confidence 3456677777777776432210 0100 11222333333 45778899999999999999987663 2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
.+|+|+|+|+.|++.++++....+ .++ .++++|+++++.+++ +||+|++.+.+++++ +..+.+++++|+|||||
T Consensus 73 ~~v~~vD~s~~ML~~a~~k~~~~~~~~i-~~v~~da~~lp~~d~--sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 73 GKVVGVDISPGMLEVARKKLKREGLQNI-EFVQGDAEDLPFPDN--SFDAVTCSFGLRNFP--DRERALREMYRVLKPGG 147 (233)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT--SE-EEEE-BTTB--S-TT---EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEE
T ss_pred cEEEEecCCHHHHHHHHHHHHhhCCCCe-eEEEcCHHHhcCCCC--ceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCe
Confidence 389999999999999999998764 467 999999999998776 999999999999995 45689999999999999
Q ss_pred EEEEEecccCCCCc------------------cccCCCCce---------eeCHHHHHHHHHhcCCcEEEee
Q psy8370 184 IIIIKDNVASGVKN------------------EYDDEDSSV---------VRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 184 ~l~i~~~~~~~~~~------------------~~~~~~~~~---------~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++.+...+.... .+......+ ..+.+++.++++++||+.++..
T Consensus 148 ~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 148 RLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp EEEEEEEEB-SSHHHHHHHHH---------------------------------------------------
T ss_pred EEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99998765554321 000000111 1378999999999999977654
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=1.8e-22 Score=154.68 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=117.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||||..+..+++.. ..+|+++|+|+.|++.++++....+ .++ +++.+|++++|+++. +||+|+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i-~fv~~dAe~LPf~D~--sFD~vt 124 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNV-EFVVGDAENLPFPDN--SFDAVT 124 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccce-EEEEechhhCCCCCC--ccCEEE
Confidence 34589999999999999999998764 3399999999999999999998755 236 999999999999887 999999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc--------cc----CC-------CCce---------e
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------YD----DE-------DSSV---------V 207 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~----~~-------~~~~---------~ 207 (256)
+.+.+++++ +..++|++++|+|||||.+++.+...+..... .. .. ...+ .
T Consensus 125 ~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 125 ISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 999999995 66799999999999999999987666543210 00 00 0001 1
Q ss_pred eCHHHHHHHHHhcCCcEEE
Q psy8370 208 RSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~ 226 (256)
.+.+++..++.++||..+.
T Consensus 203 p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred CCHHHHHHHHHhcCceEEe
Confidence 2778999999999999876
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.88 E-value=1.7e-21 Score=159.92 Aligned_cols=194 Identities=21% Similarity=0.219 Sum_probs=136.1
Q ss_pred CccchhhhhhhhccCCCCcccccccCCCCc--cccchhhhH-HHHHHHHhccCCC-----CCCCeEEEEcCCCCHhHHHH
Q psy8370 28 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSI--SDLDIQTSN-QFLSSLYCQKKSD-----PGKTRVLDVGAGIGRISKYL 99 (256)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~l~~~~~~~~~~-----~~~~~vLDiG~G~G~~~~~l 99 (256)
....||+...+.|+..+.. .++.+|... ...+...+. +++..++ ..... .++.+|||||||+|.++..+
T Consensus 60 ~i~~~Yd~~~~~~e~~~g~--~~h~g~~~~~~~~~~~~~aq~~~~~~~l-~~~~~~~~~~~~~~~VLDiGCG~G~~~~~L 136 (340)
T PLN02244 60 GIAEFYDESSGVWEDVWGE--HMHHGYYDPGASRGDHRQAQIRMIEESL-AWAGVPDDDEKRPKRIVDVGCGIGGSSRYL 136 (340)
T ss_pred HHHHHHccchHHHHHHhCC--cceeeccCCCCCcccHHHHHHHHHHHHH-HhcCCCcccCCCCCeEEEecCCCCHHHHHH
Confidence 3456788777777775532 133333221 122333333 4455555 33333 56789999999999999999
Q ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhh
Q psy8370 100 LAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ 177 (256)
Q Consensus 100 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~ 177 (256)
+.....+|+|+|+|+.+++.++++....+ .++ .+..+|+.+.+..++ +||+|++..+++|++ +...+++++++
T Consensus 137 a~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v-~~~~~D~~~~~~~~~--~FD~V~s~~~~~h~~--d~~~~l~e~~r 211 (340)
T PLN02244 137 ARKYGANVKGITLSPVQAARANALAAAQGLSDKV-SFQVADALNQPFEDG--QFDLVWSMESGEHMP--DKRKFVQELAR 211 (340)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCce-EEEEcCcccCCCCCC--CccEEEECCchhccC--CHHHHHHHHHH
Confidence 87643499999999999999999877654 356 899999988876655 899999999999995 45689999999
Q ss_pred hcCCCcEEEEEecccCCCCc---ccc--------C----CCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 178 ILNKNGIIIIKDNVASGVKN---EYD--------D----EDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 178 ~LkpgG~l~i~~~~~~~~~~---~~~--------~----~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+|||||.+++.+........ .+. . .......+.+++.++++++||+.+....
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeee
Confidence 99999999998653321110 000 0 0001124789999999999999987653
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.87 E-value=3.6e-21 Score=152.47 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHh----cCCCcceEEEccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~----~~~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
...++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.|+++... ...++ .+.++|+.+++..++ +|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i-~~~~~d~~~lp~~~~--sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI-EWIEGDATDLPFDDC--YF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCe-EEEEcccccCCCCCC--CE
Confidence 4567889999999999999988775 32 3899999999999999887542 11356 899999998887666 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--c------------cc---CCCC---------c
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--E------------YD---DEDS---------S 205 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~------------~~---~~~~---------~ 205 (256)
|+|++..++++++ +...++++++++|||||.+++.+........ . .. .... .
T Consensus 147 D~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 147 DAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred eEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 9999999999995 4568999999999999999998765543211 0 00 0001 1
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
...+.+++.++++++||+.+....
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEE
Confidence 135899999999999999887554
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.87 E-value=8.4e-21 Score=153.28 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=113.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||||||+|.++..++..+. +|+|+|+++.+++.|+.+....+ .++ .++++|+.+++.... +||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i-~~~~~dae~l~~~~~--~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTI-EYLCTTAEKLADEGR--KFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccce-eEEecCHHHhhhccC--CCCEEEEh
Confidence 3567999999999999999987766 89999999999999998765432 356 889999988765544 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC---------c---cccCCCCc--eeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------N---EYDDEDSS--VVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~---~~~~~~~~--~~~~~~~~~~~l~~~gf~ 223 (256)
.+++|+++ ...++++++++|||||.+++......... . ......+. ..++++++.++++++||+
T Consensus 206 ~vLeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 206 EVIEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred hHHHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 99999964 45899999999999999999865433110 0 01111122 246999999999999999
Q ss_pred EEEeeee
Q psy8370 224 CVKSEKV 230 (256)
Q Consensus 224 ~~~~~~~ 230 (256)
+++..-.
T Consensus 284 i~~~~G~ 290 (322)
T PLN02396 284 VKEMAGF 290 (322)
T ss_pred EEEEeee
Confidence 9877543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=3.5e-20 Score=147.04 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=116.4
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
....++.+|||||||+|..+..++.....+|+++|+|+.+++.++++... ..++ .+...|+.+.+.++. +||+|++
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i-~~~~~D~~~~~~~~~--~FD~V~s 123 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKI-EFEANDILKKDFPEN--TFDMIYS 123 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCce-EEEECCcccCCCCCC--CeEEEEE
Confidence 35678899999999999999988765333899999999999999988654 2356 888999887665555 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---ccc---CCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
..+++|++.++...++++++++|||||.+++++........ ... ........+..++.++++++||+.+.....
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI 203 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC
Confidence 99999987667889999999999999999998764433111 000 001112248899999999999999876643
No 8
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.86 E-value=5.8e-20 Score=139.78 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|..+..+++++. +|+|+|+|+.+++.++++....+. ++ .+...|+.+.... . +||+|++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~--~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAVVDLNNLTFD-G--EYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEecChhhCCcC-C--CcCEEEEe
Confidence 45678999999999999999998877 899999999999999998876552 35 7788888776542 3 69999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++++++++...+++++.+.|+|||.+++.......... . .....+.++.+++.+.++ ||+++...
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~-~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-C-TVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-C-CCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 9999998878899999999999999997665433322211 1 112235578899998886 89988764
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.85 E-value=2.5e-21 Score=145.76 Aligned_cols=149 Identities=23% Similarity=0.254 Sum_probs=118.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
-++.+|||+|||.|.++..+++.|+ +|+|+|.++.+++.|+......+..+ .+.+..++++....+ +||+|+|..+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~--~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGG--QFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCC--CccEEEEhhH
Confidence 4789999999999999999999996 99999999999999999887766666 788888888876655 8999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccC--CCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDD--EDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++|++++ ..+++.|.+.+||||.+++++........ .... ........++++...+...|+.+.
T Consensus 134 lEHv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 134 LEHVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred HHccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 9999654 47999999999999999998765544221 1111 111223578888888888899888
Q ss_pred EeeeecCCC
Q psy8370 226 KSEKVTGMP 234 (256)
Q Consensus 226 ~~~~~~~~~ 234 (256)
.......+|
T Consensus 212 ~~~g~~y~p 220 (243)
T COG2227 212 DRKGLTYNP 220 (243)
T ss_pred eecceEecc
Confidence 766544444
No 10
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.85 E-value=2.3e-20 Score=147.82 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=129.9
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-c
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-H 103 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~ 103 (256)
.+....+|+...++|...-........+|..-...++..+. +.+..+. +...+.++.+|||||||.|.++..++++ |
T Consensus 7 ~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~-~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g 85 (273)
T PF02353_consen 7 RENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLC-EKLGLKPGDRVLDIGCGWGGLAIYAAERYG 85 (273)
T ss_dssp HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHH-TTTT--TT-EEEEES-TTSHHHHHHHHHH-
T ss_pred HHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHcC
Confidence 33456788888888887554432223333333444555665 4455555 7778999999999999999999999998 6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCC
Q psy8370 104 FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 181 (256)
Q Consensus 104 ~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 181 (256)
+ +|+|+.+|+...+.+++++...+ .++ .+...|..+++. +||.|++..+++|+.......+++++.+.|+|
T Consensus 86 ~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v-~v~~~D~~~~~~-----~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 86 C-HVTGITLSEEQAEYARERIREAGLEDRV-EVRLQDYRDLPG-----KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp --EEEEEES-HHHHHHHHHHHHCSTSSSTE-EEEES-GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred c-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEEeeccccCC-----CCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 5 99999999999999999998776 456 888899887643 69999999999999888888999999999999
Q ss_pred CcEEEEEecccCCCCccc-----------cCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 182 NGIIIIKDNVASGVKNEY-----------DDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 182 gG~l~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
||.+++............ ....+....+..++...+++.||++.....
T Consensus 159 gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 159 GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 999998654333321100 111222335788898889999999987653
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=5.3e-20 Score=145.85 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....+ .++ .++++|+.++.+... ++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v-~~~~~d~~~l~~~~~-~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNM-QFIHCAAQDIAQHLE-TPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccce-EEEEcCHHHHhhhcC-CCCCEEEeh
Confidence 4568999999999999999988876 89999999999999999887654 356 888999887653222 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC----------C---ccc-----cCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV----------K---NEY-----DDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~---~~~-----~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+++|+++ ...+++++.++|||||.+++........ . ... .........+++++.+++++
T Consensus 120 ~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 120 AVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred hHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 99999954 4589999999999999998864322110 0 000 00111234688999999999
Q ss_pred cCCcEEEee
Q psy8370 220 ANLKCVKSE 228 (256)
Q Consensus 220 ~gf~~~~~~ 228 (256)
+||+++...
T Consensus 198 aGf~~~~~~ 206 (255)
T PRK11036 198 AGWQIMGKT 206 (255)
T ss_pred CCCeEeeee
Confidence 999998544
No 12
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.85 E-value=3.2e-20 Score=137.88 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=107.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+..+++++||+|||.|+.+.+|+++|+ .|+++|.|+.+++.+++.....+..+ .....|+.+...+ . .||+|++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i-~~~~~Dl~~~~~~-~--~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDI-RTRVADLNDFDFP-E--EYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TE-EEEE-BGCCBS-T-T--TEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCcee-EEEEecchhcccc-C--CcCEEEEE
Confidence 455789999999999999999999999 89999999999999988887777677 8899999887764 3 69999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++++++++.+.++++.+.+.++|||.+++.......... ......+.+.+.++...+. |++++...+
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--CPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--CCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 9999999988999999999999999998886543332221 1223345567888888884 788876543
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=4.4e-20 Score=136.44 Aligned_cols=143 Identities=23% Similarity=0.289 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
.+.+..+. . ...++.+|||||||+|.++..+...++ +++|+|+++.+++. ... .....+.......
T Consensus 10 ~~~~~~~~-~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~-~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 10 ADLLERLL-P--RLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNV-VFDNFDAQDPPFP 75 (161)
T ss_dssp HHHHHHHH-T--CTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTS-EEEEEECHTHHCH
T ss_pred HHHHHHHh-c--ccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhh-hhhhhhhhhhhcc
Confidence 34555555 1 157789999999999999999987777 99999999999887 122 3333333333334
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC--------CCccccCCCCceeeCHHHHHHHH
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG--------VKNEYDDEDSSVVRSLPQFCLLF 217 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l 217 (256)
.+ +||+|+++.+++|++ +...+++++.++|||||.+++.+..... .........+...++.+++.+++
T Consensus 76 ~~--~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 151 (161)
T PF13489_consen 76 DG--SFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL 151 (161)
T ss_dssp SS--SEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH
T ss_pred cc--chhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH
Confidence 44 899999999999996 5679999999999999999999876531 11111111455778999999999
Q ss_pred HhcCCcEEE
Q psy8370 218 SKANLKCVK 226 (256)
Q Consensus 218 ~~~gf~~~~ 226 (256)
+++||++++
T Consensus 152 ~~~G~~iv~ 160 (161)
T PF13489_consen 152 EQAGFEIVE 160 (161)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 999999876
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.2e-19 Score=141.44 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=145.5
Q ss_pred hcCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC
Q psy8370 25 EKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF 104 (256)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~ 104 (256)
.......||+...++|...........-.|..-+...+.+++..-.+.+....++.++.+|||||||.|.++..++++..
T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~ 95 (283)
T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG 95 (283)
T ss_pred hhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC
Confidence 34566778887777777754433222222222223345555533333443777899999999999999999999988853
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCC
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 182 (256)
.+|+|+++|++..+.+++++...+ .++ ++...|..++. + .||-|++..+++|+..+....+++.+++.|+||
T Consensus 96 v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v-~v~l~d~rd~~---e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 96 VTVVGVTLSEEQLAYAEKRIAARGLEDNV-EVRLQDYRDFE---E--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCccc-EEEeccccccc---c--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 499999999999999999998877 356 88888888774 2 599999999999998888899999999999999
Q ss_pred cEEEEEecccCCCCcc-------ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 183 GIIIIKDNVASGVKNE-------YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 183 G~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
|.+++........... .....+....+..++.....++||.+....
T Consensus 170 G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~ 222 (283)
T COG2230 170 GRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVE 222 (283)
T ss_pred ceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHh
Confidence 9999976555443210 011122233477888888999999988765
No 15
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.84 E-value=2.1e-19 Score=136.49 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.+|||+|||+|.++..++.++. +|+|+|+|+.+++.++++....+.++ .+...|+...+. .. +||+|++..
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~-~~--~fD~I~~~~ 102 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPL-RTDAYDINAAAL-NE--DYDFIFSTV 102 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCc-eeEeccchhccc-cC--CCCEEEEec
Confidence 44568999999999999999988887 89999999999999998877655455 677777765443 23 799999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++++++.++...+++++++.|+|||.+++.......... ......+..+.+++.+.+. +|+++....
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~--~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP--CHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC--CCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 999998778889999999999999997665433322111 1112345689999999885 588887663
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.83 E-value=1.6e-19 Score=141.32 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=113.3
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
....++.+|||+|||+|.++..++... . .+|+|+|+++.+++.++++....+ .++ .++.+|+.+.+...+ +||+
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~ 117 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNV-ELVHGNAMELPFDDN--SFDY 117 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCce-EEEEechhcCCCCCC--CccE
Confidence 356678899999999999999987663 2 389999999999999999886544 356 888999988765544 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----------ccCC----------------CCce
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------YDDE----------------DSSV 206 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~----------------~~~~ 206 (256)
|++..++++++ +..++++++.++|+|||.+++.+...+..... .... ....
T Consensus 118 V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 118 VTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred EEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 99999999985 44689999999999999999876543322100 0000 0001
Q ss_pred eeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
..+.+++.++++++||+.++.....
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 2477899999999999988766433
No 17
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.83 E-value=5.3e-19 Score=142.30 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.++++....+.++ .+...|+..... .. +||+|++..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v-~~~~~D~~~~~~-~~--~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNI-RTGLYDINSASI-QE--EYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCce-EEEEechhcccc-cC--CccEEEEcchh
Confidence 456999999999999999988887 89999999999999999887766566 777888876544 33 79999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+++++++...+++++.+.|+|||.+++.......... ......+.++..++.+.+. +|+++...+
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~--~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP--CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC--CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence 9998888889999999999999997765433222211 1122345678999999995 599887653
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=1e-18 Score=142.08 Aligned_cols=147 Identities=21% Similarity=0.218 Sum_probs=110.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..++..|+|+|+|+.++..++...... ..++ .+..+|+.+++. .. +||+|+
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i-~~~~~d~e~lp~-~~--~FD~V~ 194 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRA-HLLPLGIEQLPA-LK--AFDTVF 194 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCe-EEEeCCHHHCCC-cC--CcCEEE
Confidence 34567899999999999999998888778999999999887654432221 2356 889999988876 44 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCCC-CceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDED-SSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
|..+++|.. +...+++++++.|+|||.+++.......... .+.... ..+..+.+++..+++++||+.++.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 999999984 4568999999999999999987543222111 011111 123358899999999999999876
Q ss_pred eee
Q psy8370 228 EKV 230 (256)
Q Consensus 228 ~~~ 230 (256)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 643
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.81 E-value=1.8e-18 Score=139.17 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=109.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH--hcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL--KDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||||||+|.++..++..++..|+|+|+|+.|+..++..-. ....++ .+...++.+++.. . +||
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v-~~~~~~ie~lp~~-~--~FD 190 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA-ILEPLGIEQLHEL-Y--AFD 190 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe-EEEECCHHHCCCC-C--CcC
Confidence 333456678999999999999999888887789999999999876543222 112345 6778888877653 3 699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCC-CCceeeCHHHHHHHHHhcCCcE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDE-DSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
+|++..+++|.+ +....+++++++|+|||.+++.+........ .+... ...+..+..++..+++++||+.
T Consensus 191 ~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 191 TVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred EEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 999999999995 4468999999999999999987543322111 00101 1123358899999999999999
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
++...
T Consensus 269 V~i~~ 273 (314)
T TIGR00452 269 FRILD 273 (314)
T ss_pred EEEEe
Confidence 87654
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.81 E-value=5.3e-19 Score=140.20 Aligned_cols=140 Identities=20% Similarity=0.276 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....++.+|||||||+|.++..++.... .+|+|+|+|+.|++.+++. ++ .+..+|+.++. ... +||+|+
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~-~~~~~d~~~~~-~~~--~fD~v~ 94 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GV-DARTGDVRDWK-PKP--DTDVVV 94 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CC-cEEEcChhhCC-CCC--CceEEE
Confidence 3456789999999999999999987742 3899999999999999763 45 88899998774 334 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------cc----cCC---CCceeeCHHHHHHHH
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------EY----DDE---DSSVVRSLPQFCLLF 217 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~~----~~~---~~~~~~~~~~~~~~l 217 (256)
++.++||++ +...++++++++|||||.+++.......... .+ ... ......+.+++.+++
T Consensus 95 ~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 95 SNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred EehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 999999995 4468999999999999999986432110000 00 000 011235889999999
Q ss_pred HhcCCcEEEee
Q psy8370 218 SKANLKCVKSE 228 (256)
Q Consensus 218 ~~~gf~~~~~~ 228 (256)
+++||++....
T Consensus 173 ~~aGf~v~~~~ 183 (255)
T PRK14103 173 TDAGCKVDAWE 183 (255)
T ss_pred HhCCCeEEEEe
Confidence 99999865444
No 21
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.81 E-value=1.3e-18 Score=133.18 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCcceEEEccccccCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------DCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~i~~~~~~d~~~~~~~~ 146 (256)
.++.+|||+|||.|..+.+|+.+|+ +|+|+|+|+.+++.+...... .+.++ .+.++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI-EIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce-EEEEccCCCCCccc
Confidence 4678999999999999999999999 899999999999986442210 12356 88999998876532
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
. +.||.|+...++++++++.+..+++.+.+.|+|||.+++......... .....+..+.+++.+++.. +|.+..
T Consensus 111 ~-~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----~~gpp~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 111 L-GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----MAGPPFSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred C-CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----CCCcCCCCCHHHHHHHhcC-CceEEE
Confidence 2 379999999999999999999999999999999998666543322111 1123356789999998863 566655
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
..
T Consensus 185 ~~ 186 (213)
T TIGR03840 185 LE 186 (213)
T ss_pred Ee
Confidence 44
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.81 E-value=1.2e-18 Score=150.00 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++......++ .+..+|+...+.+.+ +||+|++.
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~I~s~ 339 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSV-EFEVADCTKKTYPDN--SFDVIYSR 339 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCce-EEEEcCcccCCCCCC--CEEEEEEC
Confidence 356678999999999999998877643489999999999999998876544466 889999987765544 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-----ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
.+++|++ +...++++++++|+|||.+++.+......... ..........+.+++.++++++||+++..+
T Consensus 340 ~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 340 DTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred CcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999995 45689999999999999999987544322110 000111234588999999999999998654
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=4e-19 Score=140.02 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK--H-FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~--~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|..+..++.. . ..+++|+|+|+.|++.|++++...+ .++ .++++|+.+.+. . .+|+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v-~~~~~d~~~~~~--~--~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-DVIEGDIRDIAI--E--NASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEeCChhhCCC--C--CCCEE
Confidence 56789999999999999888663 1 2389999999999999999987644 357 889999887654 2 48999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc-------------cCC-------------CCceee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-------------DDE-------------DSSVVR 208 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------------~~~-------------~~~~~~ 208 (256)
+++.+++++++++...+++++++.|||||.+++++.......... ... ......
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 999999999887778999999999999999999875433221100 000 001124
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q psy8370 209 SLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~ 228 (256)
++++..++++++||..+...
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELW 229 (247)
T ss_pred CHHHHHHHHHHcCchhHHHH
Confidence 88899999999999876543
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=1e-18 Score=121.17 Aligned_cols=106 Identities=25% Similarity=0.418 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
|+.+|||||||+|.++..+++. ...+++|+|+|+.+++.++++.... ..++ .+++.|+ ....... +.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~-~~~~~~~-~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRI-TFVQGDA-EFDPDFL-EPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTE-EEEESCC-HGGTTTS-SCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEECcc-ccCcccC-CCCCEEEEC
Confidence 5789999999999999999883 3338999999999999999999433 3678 9999999 3222221 369999999
Q ss_pred h-hhhccCH-HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 158 W-VLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~-~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. .++++.. ++...+++.+++.|+|||.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 5665543 577889999999999999999864
No 25
>KOG1270|consensus
Probab=99.80 E-value=3.8e-19 Score=134.92 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=109.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---C----CcceEEEccccccCCCCCCCceeEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---D----KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~----~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+.+|||+|||+|.++..|++.|+ +|+|+|+++.|++.|++...... . ++ .+.+.++++.. +.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l-~~~~~~~E~~~-----~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL-EYEDTDVEGLT-----GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceee-ehhhcchhhcc-----ccccee
Confidence 47899999999999999988887 99999999999999999833221 1 12 34444544432 379999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------------cccCCCCceeeCHHHHHHHHHhc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------------EYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+|..+++|+ .+++.+++.+.+.|||||.+++++..+..... +..........++.++..++.++
T Consensus 163 vcsevleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 163 VCSEVLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred eeHHHHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 999999999 67789999999999999999998654433211 11111222335899999999999
Q ss_pred CCcEEEeeeecCCCCc
Q psy8370 221 NLKCVKSEKVTGMPKS 236 (256)
Q Consensus 221 gf~~~~~~~~~~~~~~ 236 (256)
++++....-...+|..
T Consensus 241 ~~~v~~v~G~~y~p~s 256 (282)
T KOG1270|consen 241 GAQVNDVVGEVYNPIS 256 (282)
T ss_pred Ccchhhhhcccccccc
Confidence 9998877655555543
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=5.1e-19 Score=118.88 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=81.3
Q ss_pred EEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCH
Q psy8370 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~ 165 (256)
||+|||+|..+..+++.+..+|+++|+++.+++.++++.... .+ .+...|+.+++.+++ +||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~-~~~~~d~~~l~~~~~--sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GV-SFRQGDAEDLPFPDN--SFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TE-EEEESBTTSSSS-TT---EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--Cc-hheeehHHhCccccc--cccccccccceeec--
Confidence 899999999999998884559999999999999999987653 34 589999999987766 99999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 166 EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 166 ~~~~~~l~~~~~~LkpgG~l~i 187 (256)
++..++++++.|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 6778999999999999999985
No 27
>KOG3178|consensus
Probab=99.80 E-value=1.8e-18 Score=137.25 Aligned_cols=211 Identities=28% Similarity=0.401 Sum_probs=169.2
Q ss_pred ccchhhhhhhhccCCCCcccc-cccCCCCccc---cchhhhHHHHHHHHhcc-CC----CCCCCeEEEEcCCCCHhHHHH
Q psy8370 29 NRSHYSEVTEYYSNVPPTIDG-MLNGYSSISD---LDIQTSNQFLSSLYCQK-KS----DPGKTRVLDVGAGIGRISKYL 99 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~-~~----~~~~~~vLDiG~G~G~~~~~l 99 (256)
...||.++..+|...+.+.++ ++++|...+. .++..+..++..++... .+ ...-...+|+|+|.|+.+..+
T Consensus 116 ~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~l 195 (342)
T KOG3178|consen 116 TWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNL 195 (342)
T ss_pred hHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHH
Confidence 456788999999999999888 7899977655 67777777777766321 12 223478899999999999999
Q ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhc
Q psy8370 100 LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 179 (256)
Q Consensus 100 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~L 179 (256)
+. .++.+-+++.+...+..++..+. .+ + ..+.+|..+- .+ .-|+|++.+++||+++++..++|++|+..|
T Consensus 196 l~-~fp~ik~infdlp~v~~~a~~~~-~g--V-~~v~gdmfq~-~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL 265 (342)
T KOG3178|consen 196 LS-KYPHIKGINFDLPFVLAAAPYLA-PG--V-EHVAGDMFQD-TP----KGDAIWMKWILHDWTDEDCVKILKNCKKSL 265 (342)
T ss_pred HH-hCCCCceeecCHHHHHhhhhhhc-CC--c-ceeccccccc-CC----CcCeEEEEeecccCChHHHHHHHHHHHHhC
Confidence 88 66689999999988888877764 32 5 6677777655 22 348999999999999999999999999999
Q ss_pred CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEeccCCC
Q psy8370 180 NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKPNKD 250 (256)
Q Consensus 180 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (256)
+|||.+++.++..+. ....+...+.+.+..+-+...+.+.|.+....+.+...|...|+++++++++..+
T Consensus 266 ~~~GkIiv~E~V~p~-e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~ 335 (342)
T KOG3178|consen 266 PPGGKIIVVENVTPE-EDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY 335 (342)
T ss_pred CCCCEEEEEeccCCC-CCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence 999999999987776 2224444567777888888888888999998888999999999999999887643
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.80 E-value=3.3e-18 Score=133.27 Aligned_cols=141 Identities=20% Similarity=0.242 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
++|||||||+|..+..+++... .+++|+|+|+.+++.+++++...+ .++ .+...|+...+. .+ +||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i-~~~~~d~~~~~~-~~--~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRI-RIFYRDSAKDPF-PD--TYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcce-EEEecccccCCC-CC--CCCEeehHHH
Confidence 4799999999999999887653 389999999999999999987644 356 888888865533 23 7999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
++|++ +...++++++++|+|||.+++.+................+..+..++.+++.++||++++...
T Consensus 77 l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 77 IHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99995 456899999999999999999875432211111111223356889999999999999987664
No 29
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.80 E-value=5.5e-18 Score=130.20 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=111.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------------cCCCcce
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------DCDKLDK 133 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~i~~ 133 (256)
.++.+.+ ......++.+|||+|||.|..+.+|+.+|+ +|+|||+|+.+++.+...... ...++ .
T Consensus 24 ~~L~~~~-~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v-~ 100 (218)
T PRK13255 24 PLLQKYW-PALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI-T 100 (218)
T ss_pred HHHHHHH-HhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce-E
Confidence 3455554 222345678999999999999999999998 899999999999986432110 11356 7
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
+.++|+.++.+... +.||.|+...++++++++.+..+++.+.++|+|||.+++......... . ....+..+.+++
T Consensus 101 ~~~~D~~~l~~~~~-~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~--~gPp~~~~~~el 175 (218)
T PRK13255 101 IYCGDFFALTAADL-ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L--AGPPFSVSDEEV 175 (218)
T ss_pred EEECcccCCCcccC-CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C--CCCCCCCCHHHH
Confidence 88999988865432 379999999999999999999999999999999997555332222111 1 122356789999
Q ss_pred HHHHHhcCCcEEEeee
Q psy8370 214 CLLFSKANLKCVKSEK 229 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~~ 229 (256)
.+++.. +|++.....
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999853 366665443
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=4.9e-18 Score=133.46 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|++++...+ .++ .++.+|+.+.+.. .+|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~----~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-EILCNDIRHVEIK----NASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEECChhhCCCC----CCCEE
Confidence 467899999999999999887753 2389999999999999999987643 356 8899999877642 47999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc---c----------cCC-------------CCceee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---Y----------DDE-------------DSSVVR 208 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~----------~~~-------------~~~~~~ 208 (256)
++..+++++++++...++++++++|+|||.+++.+......... . ... ......
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99999999988778899999999999999999987644322110 0 000 011235
Q ss_pred CHHHHHHHHHhcCCcEEEe
Q psy8370 209 SLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~ 227 (256)
+.+++.++++++||..++.
T Consensus 207 s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CHHHHHHHHHHcCCchHHH
Confidence 8899999999999986543
No 31
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.78 E-value=1.2e-17 Score=132.22 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...+..+|||+|||+|.++..++..+. +++++|+|+.|++.++++.. .. .++.+|+..++..+. +||+|+++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~----~~-~~~~~d~~~~~~~~~--~fD~V~s~ 110 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA----AD-HYLAGDIESLPLATA--TFDLAWSN 110 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC----CC-CEEEcCcccCcCCCC--cEEEEEEC
Confidence 344578999999999999999877665 89999999999999988742 23 678899988776555 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------cccC-CCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDD-EDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.++++.+ +...++.++.++|+|||.++++......... .... ....-..+.+++..++...|+....
T Consensus 111 ~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 111 LAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred chhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 9999884 4568999999999999999998644322111 0011 1112235788999999888876543
No 32
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.78 E-value=2.6e-17 Score=136.82 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=128.1
Q ss_pred cCCccchhhhhhhhccCCCCcccccccCCCCccccchhhhH-HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC
Q psy8370 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF 104 (256)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~ 104 (256)
+.....+|+...++|.........+..+|.. ....+..+. ..+..+. +.....++.+|||||||+|.++..++....
T Consensus 113 ~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~-~~~~L~~Aq~~k~~~l~-~~l~l~~g~rVLDIGcG~G~~a~~la~~~g 190 (383)
T PRK11705 113 WIVGKEHYDLGNDLFEAMLDPRMQYSCGYWK-DADTLEEAQEAKLDLIC-RKLQLKPGMRVLDIGCGWGGLARYAAEHYG 190 (383)
T ss_pred HHhhhhhcCCcHHHHHHhcCCCCcccccccC-CCCCHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHCC
Confidence 3345677887777777644332112222221 112233333 3334344 444667889999999999999999887643
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 105 DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
.+|+|+|+|+.+++.++++... ..+ .+...|+.+. .+ +||.|++..+++|++......+++++.++|||||.
T Consensus 191 ~~V~giDlS~~~l~~A~~~~~~--l~v-~~~~~D~~~l---~~--~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 191 VSVVGVTISAEQQKLAQERCAG--LPV-EIRLQDYRDL---NG--QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred CEEEEEeCCHHHHHHHHHHhcc--CeE-EEEECchhhc---CC--CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcE
Confidence 3899999999999999998753 245 7777787654 23 79999999999999877778999999999999999
Q ss_pred EEEEecccCCCCccccC------CCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 185 IIIKDNVASGVKNEYDD------EDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 185 l~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++.............. .......+..++...++ .||.+.+..
T Consensus 263 lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 263 FLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred EEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 99976433322110000 01122346777777765 589887654
No 33
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.78 E-value=1.4e-17 Score=135.02 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||||||+|.++..+++.. ..+++++|+|+.|++.++++... .++ .++.+|+.+.+...+ +||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--~~i-~~i~gD~e~lp~~~~--sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KEC-KIIEGDAEDLPFPTD--YADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--cCC-eEEeccHHhCCCCCC--ceeEEEEcC
Confidence 456899999999999998887653 34899999999999999987643 356 889999988776555 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-cccCCCCceeeCHHHHHHHHHhcCCcEEEeeeec
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 231 (256)
+++++++. ..++++++++|+|||.+++.+........ ...........+.+++.++++++||+.++.....
T Consensus 187 ~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 187 SIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred hhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 99999644 57999999999999999886533221100 0000000112478999999999999998876543
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.77 E-value=3.1e-17 Score=127.26 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||+|||+|.++..++..+. +++|+|+|+.|++.++++....+ .++ .+..+|+.+.+ . +||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~---~--~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNV-EFEVNDLLSLC---G--EFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCce-EEEECChhhCC---C--CcCEEEE
Confidence 45688999999999999999987765 89999999999999999987554 256 88899987764 4 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCC--------CccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV--------KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|++.++...+++++.+.+++++.+.+........ .............+.+++.++++++||+++...
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 999999987778889999999999877666542211000 000011123445799999999999999998765
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 206 ~ 206 (219)
T TIGR02021 206 L 206 (219)
T ss_pred c
Confidence 3
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=7.7e-18 Score=123.16 Aligned_cols=107 Identities=30% Similarity=0.380 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC-CCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE-DLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~-~~~~~~D~V~ 155 (256)
.++.+|||+|||+|.++..++.. + ..+++|+|+|+.|++.|++++...+ .++ ++.++|+.+++.. .. .||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni-~~~~~d~~~l~~~~~~--~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNI-EFIQGDIEDLPQELEE--KFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTE-EEEESBTTCGCGCSST--TEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccccc-ceEEeehhccccccCC--CeeEEE
Confidence 46789999999999999999843 3 2389999999999999999988766 357 9999999996521 13 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+..++++++ +...+++++.+.|+++|.+++.+..
T Consensus 79 ~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999995 4568999999999999999998654
No 36
>KOG1540|consensus
Probab=99.77 E-value=6.8e-18 Score=127.36 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=119.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-------CeEEEEeCCHHHHHHHHHHHHhcC----CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQSSKFIEQAKEEILKDC----DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~ 135 (256)
++.........+..++.++||++||||..+..+++... .+|+++|+|+.|+..++++....+ ..+ .++
T Consensus 86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~-~w~ 164 (296)
T KOG1540|consen 86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRV-EWV 164 (296)
T ss_pred HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCce-EEE
Confidence 44454444556778889999999999999998876531 489999999999999999875433 236 899
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------cccC---
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------EYDD--- 201 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~~~~--- 201 (256)
++|+++++++++ +||..++.+.+.+.+ ++++.+++++|+|||||.|.+.+........ .+..
T Consensus 165 ~~dAE~LpFdd~--s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 165 EGDAEDLPFDDD--SFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred eCCcccCCCCCC--cceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhH
Confidence 999999998877 999999999999995 4569999999999999999998765544211 0000
Q ss_pred ----CCCce---------eeCHHHHHHHHHhcCCcEEE
Q psy8370 202 ----EDSSV---------VRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 202 ----~~~~~---------~~~~~~~~~~l~~~gf~~~~ 226 (256)
...++ ..+.+++..+.+++||....
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00011 12678999999999998875
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.77 E-value=2.5e-18 Score=116.82 Aligned_cols=96 Identities=23% Similarity=0.395 Sum_probs=81.6
Q ss_pred EEEEcCCCCHhHHHHHHhc---C-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec-hh
Q psy8370 85 VLDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WV 159 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~-~~ 159 (256)
|||+|||+|..+..++... . .+++|+|+|+.|++.++++....+.++ ++++.|+.+++.... +||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~-~~~~~D~~~l~~~~~--~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKV-RFVQADARDLPFSDG--KFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTS-EEEESCTTCHHHHSS--SEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCce-EEEECCHhHCcccCC--CeeEEEEcCCc
Confidence 7999999999999998764 2 499999999999999999987765577 999999999876555 89999995 55
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
++|+++++..++++++.++|+|||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998
No 38
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.76 E-value=3.7e-17 Score=131.81 Aligned_cols=140 Identities=15% Similarity=0.131 Sum_probs=101.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCceeEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.... ..++ .+...|+.++ .+ +||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~-~f~~~Dl~~l---~~--~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLP-KFEANDLESL---SG--KYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccce-EEEEcchhhc---CC--CcCEE
Confidence 568999999999999999988876 8999999999999999987653 1234 6777887554 23 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccC---CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDD---EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
+|..+++|++++....+++.+.+ +.++|.++ .......... .+.. ....+.++.+++.++++++||++
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99999999987766677877775 45555544 3322111100 0111 11234458999999999999998
Q ss_pred EEeee
Q psy8370 225 VKSEK 229 (256)
Q Consensus 225 ~~~~~ 229 (256)
...+.
T Consensus 295 ~~~~~ 299 (315)
T PLN02585 295 ARREM 299 (315)
T ss_pred EEEEE
Confidence 86553
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.76 E-value=2.8e-17 Score=131.71 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..++.. +.. +|+++|+++.+++.++++....+ .++ .+..+|+.+++...+ +||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~~~~~--~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALPVADN--SVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCCCCCC--ceeEE
Confidence 4567899999999999988776654 332 79999999999999999887655 356 888999988765544 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-cc------CCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD------DEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+++.++++.+ +...++++++++|||||.+++.+......... .. .....-..+..++.++++++||..+..
T Consensus 151 i~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 151 ISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9999999885 34579999999999999999986543322110 00 000111247789999999999998765
Q ss_pred ee
Q psy8370 228 EK 229 (256)
Q Consensus 228 ~~ 229 (256)
..
T Consensus 229 ~~ 230 (272)
T PRK11873 229 QP 230 (272)
T ss_pred Ee
Confidence 43
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.76 E-value=4e-17 Score=140.68 Aligned_cols=144 Identities=17% Similarity=0.282 Sum_probs=112.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc--cCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD--FKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~--~~~~~~~~~~D~V~ 155 (256)
...++.+|||||||+|.++..++..+. +|+|+|+++.|++.+++.... ..++ .+++.|+.. ++.+.+ +||+|+
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~-~~~i-~~~~~d~~~~~~~~~~~--~fD~I~ 108 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGH-YKNV-KFMCADVTSPDLNISDG--SVDLIF 108 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhcc-CCce-EEEEecccccccCCCCC--CEEEEe
Confidence 345667999999999999999987754 899999999999987654322 2356 788899864 333334 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+..+++|+++++...+++++++.|+|||.+++.+..................++...+.+++.++||....
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 99999999887788999999999999999999876544332222233445567788999999999988764
No 41
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.76 E-value=8.2e-17 Score=125.94 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+|||+|||+|.++..++..+. .|+|+|+|+.+++.+++++...+. ++ .+..+|+.. ... +||+|++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~---~~~--~fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNI-TFEVGDLES---LLG--RFDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCc-EEEEcCchh---ccC--CcCEEEE
Confidence 35678999999999999999988776 799999999999999998876542 56 788888432 223 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC-----CCcc---ccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKNE---YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|++.+....+++.+.+.+++++.+.+....... .... ..........+..++.++++.+||++....
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 99999988888888999999877655544432110000 0000 111122344688999999999999998775
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 214 ~ 214 (230)
T PRK07580 214 R 214 (230)
T ss_pred e
Confidence 4
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.75 E-value=6.9e-17 Score=125.77 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=111.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|..+..++..+.. +++++|+++.+++.++++.. ...++ .+..+|+.+.+...+ .||+|+
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i-~~~~~d~~~~~~~~~--~~D~i~ 111 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNI-EFIQADAEALPFEDN--SFDAVT 111 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCc-eEEecchhcCCCCCC--cEEEEE
Confidence 3457889999999999999999887763 89999999999999998876 33456 888999988765444 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------------cccCCCC---------ceee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYDDEDS---------SVVR 208 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------------~~~~~~~---------~~~~ 208 (256)
+..++++.+ +...+++.+.+.|+|||.+++.+........ ....... ....
T Consensus 112 ~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 112 IAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred EeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 999999884 4568999999999999999987654332210 0000000 1124
Q ss_pred CHHHHHHHHHhcCCcEEEeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+.+++..+++++||+.+....
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred CHHHHHHHHHHcCCccceeee
Confidence 778899999999999877653
No 43
>KOG2361|consensus
Probab=99.74 E-value=4.4e-17 Score=122.12 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=133.3
Q ss_pred hhhhhhhhccCCCCcccccccCCCCccccchhhhHHHHHHHHhccCCCCC--CCeEEEEcCCCCHhHHHHHHhcCC---e
Q psy8370 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPG--KTRVLDVGAGIGRISKYLLAKHFD---K 106 (256)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~---~ 106 (256)
+-.....||+..+...+..+ -.+.....+-...+. .... ..+|||+|||.|.....+++-... .
T Consensus 31 y~~~~~k~wD~fy~~~~~rF-------fkdR~wL~~Efpel~----~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRF-------FKDRNWLLREFPELL----PVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hhcchhhhhhhhhhhccccc-------cchhHHHHHhhHHhh----CccccChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 33466788888766543311 111222222233333 2222 238999999999999998776543 7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcE
Q psy8370 107 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184 (256)
Q Consensus 107 v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 184 (256)
++++|.|+.+++..+++......++ .....|+.... .+...+++|+|++.+++..++++.....+++++++|||||.
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~ 178 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGS 178 (264)
T ss_pred EEEcCCChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999988765433344 44455554332 12224699999999999999999999999999999999999
Q ss_pred EEEEecccCCCCc-------------cccC-CCCceeeCHHHHHHHHHhcCCcEEEeeeecC------CCCcceeeeEEE
Q psy8370 185 IIIKDNVASGVKN-------------EYDD-EDSSVVRSLPQFCLLFSKANLKCVKSEKVTG------MPKSLFKIYMFA 244 (256)
Q Consensus 185 l~i~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~~~~~~~~ 244 (256)
+++.+........ .... -...+.++.+++..++.++||..++...... -..+.|.+|+.+
T Consensus 179 llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~ 258 (264)
T KOG2361|consen 179 LLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQA 258 (264)
T ss_pred EEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEE
Confidence 9998654333221 0001 1123567999999999999998876543222 134566666654
No 44
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.74 E-value=2.1e-17 Score=126.70 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=112.4
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--c-----------CCCcceEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--D-----------CDKLDKCY 135 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-----------~~~i~~~~ 135 (256)
|.+++.. ....++.+||..|||.|..+.+|+++|+ +|+|+|+|+.+++.+.+.... . ..++ .++
T Consensus 26 L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~ 102 (218)
T PF05724_consen 26 LVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI-TIY 102 (218)
T ss_dssp HHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE-EEE
T ss_pred HHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce-EEE
Confidence 4444422 3466778999999999999999999998 899999999999998543221 0 1245 788
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
++|+.++.+... ++||+|+-..+++.++++.+.+..+.+.++|+|||.+++....... .......+..+.+++.+
T Consensus 103 ~gDfF~l~~~~~-g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~----~~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 103 CGDFFELPPEDV-GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ----GEMEGPPFSVTEEEVRE 177 (218)
T ss_dssp ES-TTTGGGSCH-HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C----SCSSSSS----HHHHHH
T ss_pred EcccccCChhhc-CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC----cCCCCcCCCCCHHHHHH
Confidence 999998876543 5899999999999999999999999999999999995444322221 11225567789999999
Q ss_pred HHHhcCCcEEEeeeecCC
Q psy8370 216 LFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~~ 233 (256)
++. .+|++...+.....
T Consensus 178 l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 178 LFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp HHT-TTEEEEEEEEEE-T
T ss_pred Hhc-CCcEEEEEeccccc
Confidence 998 78998877654333
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=6.6e-17 Score=128.61 Aligned_cols=142 Identities=13% Similarity=0.213 Sum_probs=104.4
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
....++.+|||||||+|.++..++.... .+|+|+|+|+.|++.++++.. ++ .+..+|+..+.+. . +||+|+
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~-~~~~~d~~~~~~~-~--~fD~v~ 98 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DC-QFVEADIASWQPP-Q--ALDLIF 98 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CC-eEEECchhccCCC-C--CccEEE
Confidence 3456789999999999999999987642 489999999999999988752 45 7889998876532 3 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------------ccc--CCCCceeeCHHHHHHHHH
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------------EYD--DEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~l~ 218 (256)
++.++++++ +...+++++.++|+|||.+++.......... .+. ........+..++.+.+.
T Consensus 99 ~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 999999995 4468999999999999999986322111000 000 000112246778889999
Q ss_pred hcCCcEEEee
Q psy8370 219 KANLKCVKSE 228 (256)
Q Consensus 219 ~~gf~~~~~~ 228 (256)
.+|+.+....
T Consensus 177 ~~g~~v~~~~ 186 (258)
T PRK01683 177 PAACRVDIWH 186 (258)
T ss_pred hCCCceeeee
Confidence 9998765433
No 46
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.73 E-value=2.2e-16 Score=128.56 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=111.7
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....+..+|||||||+|.++..++++.+. +++++|. +.+++.++++....+ .++ +++.+|+.+...+ .+
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv-~~~~~d~~~~~~~----~~ 216 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-RGIAVDIYKESYP----EA 216 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceE-EEEecCccCCCCC----CC
Confidence 4445677789999999999999999888653 8999997 789999999887654 457 8999998764332 36
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc-cc-------CC--CCc--eeeCHHHHHHHHHh
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD-------DE--DSS--VVRSLPQFCLLFSK 219 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~-------~~--~~~--~~~~~~~~~~~l~~ 219 (256)
|+|++..++|+++++....+++++++.|+|||.+++.+......... .. .. ... -..+.+++.+++++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~ 296 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES 296 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHH
Confidence 99999999999987777889999999999999999997644332110 00 00 000 12346899999999
Q ss_pred cCCcEEEe
Q psy8370 220 ANLKCVKS 227 (256)
Q Consensus 220 ~gf~~~~~ 227 (256)
+||+.+..
T Consensus 297 aGf~~v~~ 304 (306)
T TIGR02716 297 LGYKDVTM 304 (306)
T ss_pred cCCCeeEe
Confidence 99987653
No 47
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-16 Score=125.08 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=109.7
Q ss_pred CCccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-ce
Q psy8370 55 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DK 133 (256)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~~ 133 (256)
+...+.......+++.++. .++.+|||+|||+|.+++..+..|+.+++|+|++|.+++.++++.+.++... ..
T Consensus 142 GTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred CCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 3344555555567777777 5899999999999999999999999899999999999999999988765221 01
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
....+....+ .. ++||+|+++-..+ -+..+...+.+.++|||.++++. ....-.+.+
T Consensus 216 ~~~~~~~~~~-~~--~~~DvIVANILA~-----vl~~La~~~~~~lkpgg~lIlSG---------------Il~~q~~~V 272 (300)
T COG2264 216 AKGFLLLEVP-EN--GPFDVIVANILAE-----VLVELAPDIKRLLKPGGRLILSG---------------ILEDQAESV 272 (300)
T ss_pred cccccchhhc-cc--CcccEEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEe---------------ehHhHHHHH
Confidence 2222222221 11 3799999986322 24578899999999999999963 222335778
Q ss_pred HHHHHhcCCcEEEeeeecC
Q psy8370 214 CLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~~~~~ 232 (256)
.+.+.++||.++.......
T Consensus 273 ~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 273 AEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred HHHHHhCCCeEeEEEecCC
Confidence 8899999999998775543
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.73 E-value=6e-16 Score=116.23 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++....+.++ .+..+|+.+.. .. +||+|+++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~--~~--~fD~Vi~n~p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGL-DVVMTDLFKGV--RG--KFDVILFNPP 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCce-EEEEccccccc--CC--cccEEEECCC
Confidence 4567899999999999999988776 89999999999999999987665556 78888876643 23 7999999876
Q ss_pred hhccCHH-------------------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 160 LMFILDE-------------------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 160 l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
+++.++. ....+++++.++|+|||.+++..... ....++...+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---------------~~~~~~~~~l~~~ 156 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---------------NGEPDTFDKLDER 156 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc---------------CChHHHHHHHHhC
Confidence 6544321 24678999999999999999864221 1257788999999
Q ss_pred CCcEEEeeeec
Q psy8370 221 NLKCVKSEKVT 231 (256)
Q Consensus 221 gf~~~~~~~~~ 231 (256)
||+........
T Consensus 157 gf~~~~~~~~~ 167 (179)
T TIGR00537 157 GFRYEIVAERG 167 (179)
T ss_pred CCeEEEEEEee
Confidence 99988766443
No 49
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.72 E-value=3.4e-16 Score=122.36 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=106.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-ceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..-.+++|||||||.|..+..++.+|++.|+|+|+++...-..+..-+-.+... .......+++++. .+ .||+|+|
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~--~FDtVF~ 188 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG--AFDTVFS 188 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC--CcCEEEE
Confidence 355789999999999999999999999899999999876554333222222112 0333356677766 44 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cccCCCC-ceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDEDS-SVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..+++|..+ ....|++++..|+|||.+++.......... .+..... .+..+...+..+++++||..++..
T Consensus 189 MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 189 MGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred eeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999999954 458999999999999999987554333322 1222222 233589999999999999888765
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 267 ~ 267 (315)
T PF08003_consen 267 D 267 (315)
T ss_pred c
Confidence 4
No 50
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.72 E-value=1.3e-15 Score=116.13 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=86.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++.. .+ .+..+|+.+ +.... +||+|++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~-~~~~~d~~~-~~~~~--sfD~V~~~ 112 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NI-NIIQGSLFD-PFKDN--FFDLVLTK 112 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CC-cEEEeeccC-CCCCC--CEEEEEEC
Confidence 356789999999999999999776 23489999999999999988642 34 678888877 44444 89999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.+++|++++.+.++++++.+++ ++.+++.+...+.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999998888899999999997 5677777654443
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.72 E-value=7e-16 Score=120.19 Aligned_cols=147 Identities=22% Similarity=0.232 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+.+|||+|||+|.++..++..+. .++++|+++.+++.++++....+. ++ .+...|+.+.+.... ++||+|++..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKI-EYRCTSVEDLAEKGA-KSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCce-EEEeCCHHHhhcCCC-CCccEEEehh
Confidence 4578999999999999999877766 799999999999999998876543 46 788888877765431 3899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccC--CCCceeeCHHHHHHHHHhcCCcE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDD--EDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++++.. +...+++.+.++|+|||.+++.......... .... .......+..++.++++++||++
T Consensus 121 ~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i 198 (224)
T TIGR01983 121 VLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV 198 (224)
T ss_pred HHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee
Confidence 999995 4458999999999999999987543221000 0000 11112347889999999999999
Q ss_pred EEeeeec
Q psy8370 225 VKSEKVT 231 (256)
Q Consensus 225 ~~~~~~~ 231 (256)
++.....
T Consensus 199 ~~~~~~~ 205 (224)
T TIGR01983 199 KDVKGLV 205 (224)
T ss_pred eeeeeEE
Confidence 8876433
No 52
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=4.4e-16 Score=122.58 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
......++.+|||+|||+|.++..++... ..+++++|+++.+++.++++......++ .+...|+...+.... .||
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D 89 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNV-EFVRGDADGLPFPDG--SFD 89 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCce-EEEecccccCCCCCC--Cce
Confidence 33456788999999999999999987764 2389999999999999998844333456 888888877665544 899
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-cc-----cc------CCCCceeeCHHHHHHHHHhc
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-NE-----YD------DEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~-----~~------~~~~~~~~~~~~~~~~l~~~ 220 (256)
+|++..++++++ +...+++++.++|+|||.+++.+....... .. .. .....-..+..++..+++++
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 167 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREA 167 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHc
Confidence 999999999995 456899999999999999998764321100 00 00 00000113456789999999
Q ss_pred CCcEEEeee
Q psy8370 221 NLKCVKSEK 229 (256)
Q Consensus 221 gf~~~~~~~ 229 (256)
||..+....
T Consensus 168 Gf~~~~~~~ 176 (241)
T PRK08317 168 GLTDIEVEP 176 (241)
T ss_pred CCCceeEEE
Confidence 998876553
No 53
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.72 E-value=4.2e-16 Score=122.14 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=109.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||||||+|.++..++..+. +++++|+++.+++.+++++...+..+ .+...++.+.+.... +.||+|++.
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~fD~Ii~~ 121 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKI-DYRQTTAEELAAEHP-GQFDVVTCM 121 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCce-EEEecCHHHhhhhcC-CCccEEEEh
Confidence 355688999999999999999887765 89999999999999998877654455 777788776652222 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------c--ccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------E--YDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
.++++.+ +...+++.+.+.|+|||.+++.......... . ..........+..++.++++++||+
T Consensus 122 ~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 122 EMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9999995 3457899999999999999987543211100 0 0001112235788999999999999
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
++...
T Consensus 200 ~v~~~ 204 (233)
T PRK05134 200 VQDIT 204 (233)
T ss_pred Eeeee
Confidence 98764
No 54
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.71 E-value=7.2e-16 Score=121.27 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=111.1
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
..++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+ .++ .+...|+.+.+...+ .||+|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~D~I 125 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV-EFVQGDAEALPFPDN--SFDAV 125 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCe-EEEecccccCCCCCC--CccEE
Confidence 44678999999999999999988774 599999999999999999876532 346 888899887765444 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-----------c-------ccCCCC---------cee
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------E-------YDDEDS---------SVV 207 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------~-------~~~~~~---------~~~ 207 (256)
++..++++.+ +...+++.+.+.|+|||.+++.+........ . ...... ...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 9999999884 4568999999999999999987654332210 0 000000 112
Q ss_pred eCHHHHHHHHHhcCCcEEEeee
Q psy8370 208 RSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 208 ~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.+.+++.++++++||+.+....
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeee
Confidence 4678899999999999877653
No 55
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=1.5e-15 Score=113.84 Aligned_cols=124 Identities=22% Similarity=0.231 Sum_probs=98.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+++.+|||+|||+|..+..++... ..+|+++|+++.+++.++++.+..+. ++ .++.+|+.+... .. +||+|++
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~~d~~~~~~-~~--~fDlV~~ 118 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVHGRAEEFGQ-EE--KFDVVTS 118 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEeccHhhCCC-CC--CccEEEE
Confidence 3457999999999999999887643 23999999999999999999887663 46 999999988765 44 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
... ..+..+++.+++.|+|||.+++.... ....++..+.+..|+.+....
T Consensus 119 ~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~----------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 119 RAV------ASLSDLVELCLPLLKPGGRFLALKGR----------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ccc------cCHHHHHHHHHHhcCCCeEEEEEeCC----------------ChHHHHHHHHHhcCceEeeeE
Confidence 752 23457999999999999999986311 124566777788899877654
No 56
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.71 E-value=2e-17 Score=122.81 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=112.1
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
++.+.+ ......+-.++||+|||||..+..+- .....++|||+|+.|++.|.++--. ..+.+.+...+.....
T Consensus 113 ~l~emI-~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~ 185 (287)
T COG4976 113 LLAEMI-GKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLT 185 (287)
T ss_pred HHHHHH-HhccCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhcc
Confidence 344444 33445557899999999999999984 4445899999999999999886321 1345555554443122
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...||+|++..++.++ ..+..++-.+...|+|||.|.++.-.........-..+..+.++...++..+...||+++..
T Consensus 186 ~er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 186 QERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred CCcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 2489999999999999 67778999999999999999998544433322122223345578899999999999999987
Q ss_pred eee
Q psy8370 228 EKV 230 (256)
Q Consensus 228 ~~~ 230 (256)
+..
T Consensus 264 ~~t 266 (287)
T COG4976 264 EDT 266 (287)
T ss_pred ecc
Confidence 653
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.71 E-value=3e-18 Score=116.08 Aligned_cols=97 Identities=25% Similarity=0.380 Sum_probs=63.0
Q ss_pred EEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 86 LDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
||||||+|.++..+++... .+++++|+|+.|++.+++++..... .. .....+..+.......++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF-ERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E-EEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce-eEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999988832 2999999999999999888877542 22 3333333333221111389999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCcEE
Q psy8370 164 LDEDIIKFLNLCKQILNKNGII 185 (256)
Q Consensus 164 ~~~~~~~~l~~~~~~LkpgG~l 185 (256)
++...+++++++.|+|||.|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 66779999999999999986
No 58
>PRK06202 hypothetical protein; Provisional
Probab=99.70 E-value=4.7e-16 Score=121.66 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.++++.... ++ .+...+...++.... +||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~l~~~~~--~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GV-TFRQAVSDELVAEGE--RFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CC-eEEEEecccccccCC--CccEE
Confidence 56789999999999998887642 33 28999999999999998875432 34 566666655544334 89999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------c-------ccCCC-CceeeCHHHHHHHH
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------E-------YDDED-SSVVRSLPQFCLLF 217 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~-------~~~~~-~~~~~~~~~~~~~l 217 (256)
+++.++||+++++...++++++++++ |.+++.+........ . .+... ....++.+++.+++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999988777889999999998 555555433321100 0 00000 11236899999999
Q ss_pred HhcCCcEEEee
Q psy8370 218 SKANLKCVKSE 228 (256)
Q Consensus 218 ~~~gf~~~~~~ 228 (256)
++ ||++....
T Consensus 212 ~~-Gf~~~~~~ 221 (232)
T PRK06202 212 PQ-GWRVERQW 221 (232)
T ss_pred hC-CCeEEecc
Confidence 99 99987644
No 59
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.70 E-value=4.1e-17 Score=120.27 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~ 141 (256)
+.+++++.++ ......+|.|+|||+|..+..|+++-+. .++|+|.|+.|++.|+.+.. +. .|..+|+.+
T Consensus 17 RPa~dLla~V-----p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~-~f~~aDl~~ 86 (257)
T COG4106 17 RPARDLLARV-----PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DA-TFEEADLRT 86 (257)
T ss_pred CcHHHHHhhC-----CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CC-ceecccHhh
Confidence 3444555444 4677899999999999999999888543 99999999999999987753 45 899999999
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc---------------cccC--CCC
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------------EYDD--EDS 204 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~--~~~ 204 (256)
+.+... .|+++++.++++++ +...++..+...|.|||.+.+..+....... .+.. ...
T Consensus 87 w~p~~~---~dllfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r 161 (257)
T COG4106 87 WKPEQP---TDLLFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTR 161 (257)
T ss_pred cCCCCc---cchhhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCcccccc
Confidence 987654 89999999999995 5568999999999999999997432221110 0111 011
Q ss_pred ceeeCHHHHHHHHHhcCCcEEEeeeecCCC
Q psy8370 205 SVVRSLPQFCLLFSKANLKCVKSEKVTGMP 234 (256)
Q Consensus 205 ~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~ 234 (256)
.-..++..+-+++...+-++......+..+
T Consensus 162 ~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 162 APLPSPAAYYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred CCCCCHHHHHHHhCcccceeeeeeeecccc
Confidence 122477778888887777776655544443
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=2.4e-16 Score=124.06 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+.+|||+|||+|.++..++..+.. .++++|+++.+++.++++... ++ .++.+|+.+.+.... +||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~-~~~~~d~~~~~~~~~--~fD~vi~~~ 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NV-QFICGDAEKLPLEDS--SFDLIVSNL 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CC-eEEecchhhCCCCCC--ceeEEEEhh
Confidence 34579999999999999999887653 789999999999999887642 56 888999988776555 899999999
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccc--cCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY--DDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
++++.. +...+++++.++|+|||.+++............ .........+..++.+++..+ |.....
T Consensus 107 ~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 107 ALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred hhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence 999994 456899999999999999999754332211100 000112235778888888887 766543
No 61
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.70 E-value=9.2e-16 Score=117.36 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=109.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-------------hcCCCcceEEEccccccCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL-------------KDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~i~~~~~~d~~~~~~~ 145 (256)
..++.+||+.|||.|..+.+|+.+|+ .|+|+|+|+.+++.+.+... ..+.++ .+.++|+.++.+.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI-EIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce-EEEEccCcCCCcc
Confidence 44678999999999999999999999 79999999999999866321 112467 8999999998652
Q ss_pred C-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 146 D-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 146 ~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
. ..+.||+|+-..++++++++.+.+..+.+.++|+|||.+++....... ......+..+.+++++++.. +|.+
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----~~~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----KSQTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----CCCCCCCcCCHHHHHHhccC-CceE
Confidence 2 124799999999999999999999999999999999998887532211 11344556788999999864 3444
Q ss_pred EEe
Q psy8370 225 VKS 227 (256)
Q Consensus 225 ~~~ 227 (256)
...
T Consensus 193 ~~l 195 (226)
T PRK13256 193 ELI 195 (226)
T ss_pred EEe
Confidence 433
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=1.1e-15 Score=114.38 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|||+|||+|.++..++..+. .+|+++|+|+.|++.++++.+..+ .++ .++.+|+.++.. .. +||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~~d~~~~~~-~~--~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVNGRAEDFQH-EE--QFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEecchhhccc-cC--CccEEEehh
Confidence 478999999999999999876553 389999999999999998887665 357 899999988643 33 799999976
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh---cCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK---ANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gf~~~~~~~ 229 (256)
++++ ..+++.+++.|+|||.+++.... ....++..+.+. .||+.+....
T Consensus 118 -~~~~-----~~~~~~~~~~LkpgG~lvi~~~~----------------~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 118 -LASL-----NVLLELTLNLLKVGGYFLAYKGK----------------KYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -hhCH-----HHHHHHHHHhcCCCCEEEEEcCC----------------CcHHHHHHHHHhhhhcCceEeeccc
Confidence 3333 46788899999999999985210 123455555554 7999887663
No 63
>PRK04266 fibrillarin; Provisional
Probab=99.70 E-value=3.4e-15 Score=115.25 Aligned_cols=152 Identities=10% Similarity=0.014 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCcee
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYD 152 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~D 152 (256)
....++.+|||+|||+|.++..++.... ..|+++|+++.|++.+.++.... .++ .++.+|+.+.. .... +||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv-~~i~~D~~~~~~~~~l~~--~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNI-IPILADARKPERYAHVVE--KVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCc-EEEECCCCCcchhhhccc--cCC
Confidence 4677889999999999999999977642 38999999999999877766543 356 78888886521 1123 699
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
+|++... .+.....++++++++|||||.++++-....... . .... +..++..+.++++||+++.......
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~---~--~~~~-~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDV---T--KDPK-EIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccC---c--CCHH-HHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 9996522 112334578999999999999999522211111 0 1111 1124456899999999998887766
Q ss_pred CCCcceeeeE
Q psy8370 233 MPKSLFKIYM 242 (256)
Q Consensus 233 ~~~~~~~~~~ 242 (256)
+..+.|.+..
T Consensus 214 ~~~~h~~~v~ 223 (226)
T PRK04266 214 YHKDHAAVVA 223 (226)
T ss_pred CcCCeEEEEE
Confidence 6666666553
No 64
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.69 E-value=3.5e-16 Score=124.50 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=103.4
Q ss_pred CccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Q psy8370 56 SISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135 (256)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~ 135 (256)
...+...+-..+++.++. .++.+|||+|||+|.++...+..|+.+|+++|+++.+++.|+++...++... .+.
T Consensus 142 TG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~ 214 (295)
T PF06325_consen 142 TGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIE 214 (295)
T ss_dssp SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEE
T ss_pred CCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEE
Confidence 334444444456666665 5678999999999999999988999899999999999999999998776333 333
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.....+.. .. +||+|+++-... -+..++..+.+.|+|||.++++. ......+++.+
T Consensus 215 v~~~~~~~--~~--~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSG---------------Il~~~~~~v~~ 270 (295)
T PF06325_consen 215 VSLSEDLV--EG--KFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSG---------------ILEEQEDEVIE 270 (295)
T ss_dssp ESCTSCTC--CS---EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEE---------------EEGGGHHHHHH
T ss_pred EEEecccc--cc--cCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEcc---------------ccHHHHHHHHH
Confidence 22222222 23 899999985543 33568888999999999999963 22334577888
Q ss_pred HHHhcCCcEEEeeeecC
Q psy8370 216 LFSKANLKCVKSEKVTG 232 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~ 232 (256)
.+++ ||.+++......
T Consensus 271 a~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 271 AYKQ-GFELVEEREEGE 286 (295)
T ss_dssp HHHT-TEEEEEEEEETT
T ss_pred HHHC-CCEEEEEEEECC
Confidence 8876 999987765443
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.69 E-value=6.2e-16 Score=113.68 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=106.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+...-.++||+|||.|.++..|+.+. .+++++|+|+.+++.|+++..... ++ .+...|+.+..+. + .||+|+++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~-~V-~~~~~dvp~~~P~-~--~FDLIV~S 113 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP-HV-EWIQADVPEFWPE-G--RFDLIVLS 113 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S-SE-EEEES-TTT---S-S---EEEEEEE
T ss_pred CccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC-Ce-EEEECcCCCCCCC-C--CeeEEEEe
Confidence 34556889999999999999997665 599999999999999999988653 77 9999999877554 3 69999999
Q ss_pred hhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 158 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 158 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
.+++++.+ +++..++..+.+.|+|||.+++....... +. ........+.+..+|.+.=-++...+-....++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~-c~-----~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~ 187 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN-CR-----RWGHAAGAETVLEMLQEHLTEVERVECRGGSPNE 187 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH-HH-----HTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTS
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc-cc-----ccCcccchHHHHHHHHHHhhheeEEEEcCCCCCC
Confidence 99999975 68889999999999999999997542211 11 1112236788888998864444445545555555
Q ss_pred ceeeeE
Q psy8370 237 LFKIYM 242 (256)
Q Consensus 237 ~~~~~~ 242 (256)
..-+-.
T Consensus 188 ~~~~~~ 193 (201)
T PF05401_consen 188 DCLLAR 193 (201)
T ss_dssp EEEEEE
T ss_pred ceEeee
Confidence 444443
No 66
>KOG1271|consensus
Probab=99.68 E-value=2.4e-16 Score=113.07 Aligned_cols=127 Identities=22% Similarity=0.307 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CC-cceEEEccccccCCCCCCCceeEEEechh
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~-i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.+|||+|||.|.++..|++.++. ..+|||+|+.+++.|+...+..+ .+ | .|.+.|+.+.....+ +||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I-~f~q~DI~~~~~~~~--qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEI-RFQQLDITDPDFLSG--QFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcce-eEEEeeccCCccccc--ceeEEeecCc
Confidence 39999999999999999999987 49999999999999998887766 23 6 999999988766555 8999987655
Q ss_pred hhccC------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 160 LMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 160 l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+..+. ...+...+..+.+.|+|||+|+|+ +..+|.+++...+...||+.....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt----------------SCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT----------------SCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEE----------------ecCccHHHHHHHHhcCCeEEEEee
Confidence 44331 122355788899999999999996 455678999999999999876644
No 67
>KOG4300|consensus
Probab=99.68 E-value=4.9e-16 Score=113.76 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=109.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.......|||+|||||..-.++--....+|+++|+++.|.+.+.+.+.... .++..|+.++.++++...+ +++|+|++
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d-~s~DtVV~ 151 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD-GSYDTVVC 151 (252)
T ss_pred cccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc-CCeeeEEE
Confidence 445567789999999998877632233399999999999999999887654 4563588999998874333 59999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cc----cCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY----DDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
..++... ++..+.|+++.++|+|||.+++.++.+..... .. .-......++. +.-+.++.+.|+..
T Consensus 152 TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f~~~ 228 (252)
T KOG4300|consen 152 TLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEFSID 228 (252)
T ss_pred EEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcccccc
Confidence 9999988 56679999999999999999998876655432 00 11111122333 34467888899888
Q ss_pred Eeee
Q psy8370 226 KSEK 229 (256)
Q Consensus 226 ~~~~ 229 (256)
+.+.
T Consensus 229 ~~kr 232 (252)
T KOG4300|consen 229 SCKR 232 (252)
T ss_pred hhhc
Confidence 7664
No 68
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=6.6e-15 Score=108.13 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=104.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+...+ +++.+|||+|||.|.+...|........+|+|++++.+..|.++ .+ .++++|+.+....-
T Consensus 5 ~~I~~~I------~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv-~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWI------EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GV-SVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHc------CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CC-CEEECCHHHhHhhC
Confidence 3455555 77899999999999999999775433899999999988877665 45 78999998765322
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------------cccCCCCceee
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYDDEDSSVVR 208 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------------~~~~~~~~~~~ 208 (256)
.+++||.|+++.+++++. ....+|+++.|+ |...+++-++...... .+.........
T Consensus 72 ~d~sFD~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~ 146 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLC 146 (193)
T ss_pred CCCCccEEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccc
Confidence 235999999999999994 445788888776 4456665433322110 01111122235
Q ss_pred CHHHHHHHHHhcCCcEEEeeee
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
|..++..+.++.|+++++....
T Consensus 147 Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 147 TIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cHHHHHHHHHHCCCEEEEEEEE
Confidence 9999999999999999876543
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=130.39 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--CCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~~~~~~~~D~V~ 155 (256)
..++.+|||+|||+|..+..++.... .+++|+|+|+.|++.++++....+.++ .++++|..+++ ..++ +||+|+
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~i-e~I~gDa~dLp~~fede--SFDvVV 492 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSW-NVIKGDAINLSSSFEKE--SVDTIV 492 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCe-EEEEcchHhCccccCCC--CEEEEE
Confidence 34678999999999999988876543 399999999999999998876554456 77888988765 3334 899999
Q ss_pred echhhhcc-----------CHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFI-----------LDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
++.++|++ +.++..+++++++++|||||.+++.+..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99988865 2356789999999999999999998753
No 70
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=4.8e-16 Score=120.56 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
++.+|||+|||||.++..+++....+|+|+|+|++|++.++++ . .+.++|+.+++..++ +||+|++..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~-~~~~~d~~~lp~~d~--sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------D-DKVVGSFEALPFRDK--SFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------c-ceEEechhhCCCCCC--CEEEEEecChh
Confidence 4789999999999999999877423899999999999999864 1 457888888877666 99999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCC
Q psy8370 161 MFILDEDIIKFLNLCKQILNKN 182 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~Lkpg 182 (256)
++++ +..+.+++++|+|||.
T Consensus 121 ~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 121 HASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hccC--CHHHHHHHHHHHhcCc
Confidence 9984 5578999999999994
No 71
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=3.4e-15 Score=112.93 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++....+ .++ .++.+|.... ... +||+|+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i-~~~~~d~~~~--~~~--~~D~v~ 102 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNI-DIIPGEAPIE--LPG--KADAIF 102 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCe-EEEecCchhh--cCc--CCCEEE
Confidence 456788999999999999999987754 389999999999999999887654 356 7788776422 123 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+.....++ ..+++.+.+.|+|||.+++.... ..+..++.++++++||..++.
T Consensus 103 ~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~---------------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFIL---------------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCccCH-----HHHHHHHHHhcCCCeEEEEEEec---------------HhhHHHHHHHHHHCCCCcceE
Confidence 97654443 46889999999999999885211 123467788999999976543
No 72
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.67 E-value=1.3e-15 Score=120.84 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcCCCCH----hHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHh----------------------
Q psy8370 79 DPGKTRVLDVGAGIGR----ISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILK---------------------- 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~----~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~---------------------- 126 (256)
..++.+|+|+|||+|. ++..+++.+. .+|+|+|+|+.|++.|++..-.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 4444444321 2899999999999999985310
Q ss_pred ------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 ------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 ------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...++ .|...|+.+.++..+ +||+|+|.++++|++++...++++++++.|+|||.+++.
T Consensus 177 ~~v~~~ir~~V-~F~~~dl~~~~~~~~--~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 177 YRVKPELKERV-RFAKHNLLAESPPLG--DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEEChHHhCcC-EEeeccCCCCCCccC--CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01246 888999988766445 899999999999998888889999999999999999996
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.66 E-value=2.9e-15 Score=118.22 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+... .+. ...... +||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~-~~~------~~~~~~--~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL-NVY------LPQGDL--KADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc-eEE------EccCCC--CcCEEEEcCc
Confidence 5688999999999999998877777679999999999999999987654211 111 111111 6999998744
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
. +.+..+++++.++|+|||.++++.... ...+++...+++.||+++.....
T Consensus 189 ~-----~~~~~l~~~~~~~LkpgG~lilsgi~~---------------~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 189 A-----NPLLELAPDLARLLKPGGRLILSGILE---------------EQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred H-----HHHHHHHHHHHHhcCCCcEEEEEECcH---------------hhHHHHHHHHHHCCCEEEEEEEe
Confidence 2 234578999999999999999963221 23567889999999999876543
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.66 E-value=3.9e-15 Score=119.79 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.++++....+. ++ .....+... .... +||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-~~~~~~~~~--~~~~--~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-QVKLIYLEQ--PIEG--KADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-EEEeccccc--ccCC--CceEEEEe
Confidence 45789999999999999988877777999999999999999999876542 23 444444222 2223 79999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKV 230 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 230 (256)
...+ .+..+++++.+.|+|||.++++... .....++.+.+++. |+++.....
T Consensus 233 ~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~---------------~~~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 233 ILAE-----VIKELYPQFSRLVKPGGWLILSGIL---------------ETQAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred cCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc---------------HhHHHHHHHHHHcc-CceeeEecc
Confidence 6543 3457899999999999999996321 12346778888776 988776543
No 75
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.66 E-value=6.1e-15 Score=113.33 Aligned_cols=147 Identities=19% Similarity=0.244 Sum_probs=114.1
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~ 144 (256)
+|..+. ......+|||||||+|..+..++.+.. .++++||+++.+.+.|++++...+ .++ +++++|+.++..
T Consensus 35 LL~~~~----~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri-~v~~~Di~~~~~ 109 (248)
T COG4123 35 LLAAFA----PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERI-QVIEADIKEFLK 109 (248)
T ss_pred HHHhhc----ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhce-eEehhhHHHhhh
Confidence 455555 455689999999999999999988843 599999999999999999998644 678 999999999876
Q ss_pred CCCCCceeEEEechh----------------hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceee
Q psy8370 145 EDLNIKYDVIWIQWV----------------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 208 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~----------------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 208 (256)
.....+||+|+|+=- -+|...-.++.+++.+.++|||||.+.++- . ..
T Consensus 110 ~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~----------r------~e 173 (248)
T COG4123 110 ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH----------R------PE 173 (248)
T ss_pred cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----------c------HH
Confidence 544347999999811 122222347889999999999999999962 1 11
Q ss_pred CHHHHHHHHHhcCCcEEEeeeecCCCC
Q psy8370 209 SLPQFCLLFSKANLKCVKSEKVTGMPK 235 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~~~~~~~~ 235 (256)
...++..++.+.+|...+.......+.
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p~~~ 200 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYPKIG 200 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCCC
Confidence 346788999999999988876665544
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.64 E-value=8.3e-15 Score=103.30 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC-CCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP-EDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~-~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++.... .+|+++|+++.+++.++++....+ .++ .++..|+..... ... +||+|
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~D~v 92 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNI-VIVEGDAPEALEDSLP--EPDRV 92 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCce-EEEeccccccChhhcC--CCCEE
Confidence 456678999999999999999987643 489999999999999999887654 355 778888765322 223 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++..... ....+++.+++.|+|||.+++.
T Consensus 93 ~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 93 FIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9976433 3358999999999999999985
No 77
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.64 E-value=3.2e-14 Score=115.20 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC-CCCC--CCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK-PEDL--NIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~-~~~~--~~~~D 152 (256)
.++.+|||+|||+|..+..+++... .+|+++|+|+.|++.+++++.... .++ .++++|+.+.. .... .+...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v-~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEV-HGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceE-EEEEEcccchhhhhcccccCCeE
Confidence 4568999999999999999987752 389999999999999999876532 345 66889987642 2211 01234
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++..+++++++++...+++++++.|+|||.+++.
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555567889998888899999999999999999974
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=6.7e-15 Score=109.39 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=92.6
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEc
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNV 137 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~ 137 (256)
.......+++.+.+. ..+..+|||+|||+|.++..++..+.. +|+++|+++.+++.+++++...+.. + .++..
T Consensus 14 ~~~d~~t~lL~~~l~----~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v-~~~~~ 88 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLP----KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENV-EVVQS 88 (170)
T ss_dssp TSHHHHHHHHHHHHH----HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTE-EEEES
T ss_pred CCCCHHHHHHHHHHh----hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccc-ccccc
Confidence 344455566666661 227889999999999999999888775 7999999999999999999887633 6 88898
Q ss_pred cccccCCCCCCCceeEEEechhhhccCH---HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|..+... .. +||+|+++--++.-.. ....++++.+.+.|+|||.+++.
T Consensus 89 d~~~~~~-~~--~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 89 DLFEALP-DG--KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp STTTTCC-TT--CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccc-cc--ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9876554 33 7999999854443322 34678999999999999999875
No 79
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.64 E-value=2.1e-15 Score=115.19 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc-cccC--CCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI-QDFK--PEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~-~~~~--~~~~~~~~D~V~ 155 (256)
++.+|||+|||+|..+..++.... .+++++|+|+.+++.++++....+ .++ .++.+|+ ..++ .... +||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~~d~~~~l~~~~~~~--~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLCGDAVEVLLDMFPDG--SLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEecCHHHHHHHHcCcc--ccceEE
Confidence 678999999999999999977643 389999999999999999887654 456 8899998 6554 3334 799999
Q ss_pred echhhhccC------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 156 IQWVLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 156 ~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
+.....+.. ......++++++++|+|||.+++..... .-..++.+.+++.|+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~---------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE---------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH---------------HHHHHHHHHHHhCccccc
Confidence 875432221 1123579999999999999999963111 123567788888998765
No 80
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=2.2e-14 Score=109.07 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-C-CCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-K-PEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~-~~~~~~~~D~V~~~ 157 (256)
.++.+|||+|||+|.++..++......++|+|+++.+++.+++. ++ .++.+|+.+. + ... ++||+|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~-~~~~~d~~~~l~~~~~--~sfD~Vi~~ 82 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GV-NVIQGDLDEGLEAFPD--KSFDYVILS 82 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CC-eEEEEEhhhcccccCC--CCcCEEEEh
Confidence 46679999999999999988765444789999999999888642 35 7788888653 2 223 389999999
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC----------CCcc--------ccCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG----------VKNE--------YDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----------~~~~--------~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+++|++ +...+++++.+.+++ .+++.+.... .... ..........+.+++.+++++
T Consensus 83 ~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 9999995 455788888887664 3333111100 0000 001111234689999999999
Q ss_pred cCCcEEEeeee
Q psy8370 220 ANLKCVKSEKV 230 (256)
Q Consensus 220 ~gf~~~~~~~~ 230 (256)
+||+++.....
T Consensus 158 ~Gf~v~~~~~~ 168 (194)
T TIGR02081 158 LNLRILDRAAF 168 (194)
T ss_pred CCCEEEEEEEe
Confidence 99999876654
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=99.63 E-value=3.4e-14 Score=110.40 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=95.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+.++ .++..|+.+... .. +||+|+++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-~~~~~d~~~~~~-~~--~fD~Vi~n 108 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV-DVRRGDWARAVE-FR--PFDVVVSN 108 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee-EEEECchhhhcc-CC--CeeEEEEC
Confidence 356678999999999999999877665599999999999999999887655556 788888876432 33 79999997
Q ss_pred hhhhccC-------------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 158 WVLMFIL-------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 158 ~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
--....+ ...+..+++++.+.|+|||.+++...... ...++.+.++
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---------------~~~~~~~~l~ 173 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---------------GVERTLTRLS 173 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---------------CHHHHHHHHH
Confidence 3211110 01246688999999999999998532211 2345666777
Q ss_pred hcCCcEEEe
Q psy8370 219 KANLKCVKS 227 (256)
Q Consensus 219 ~~gf~~~~~ 227 (256)
+.||.+...
T Consensus 174 ~~g~~~~~~ 182 (223)
T PRK14967 174 EAGLDAEVV 182 (223)
T ss_pred HCCCCeEEE
Confidence 777765543
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=4.8e-14 Score=102.95 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=114.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~ 146 (256)
++.+......+.++.+++|||||+|..+..++..++. +|+++|-++++++..+++.+..+ .++ .++.+++-+.....
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~-~vv~g~Ap~~L~~~ 100 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcE-EEEeccchHhhcCC
Confidence 4444334556889999999999999999999855544 99999999999999999998877 567 88999988776654
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC-cEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL-KCV 225 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf-~~~ 225 (256)
. ++|.|+.... ..+ ..+++.+...|+|||.+++.-. ...+.....+.+++.|+ +++
T Consensus 101 ~--~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~nai---------------tlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 101 P--SPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAI---------------TLETLAKALEALEQLGGREIV 157 (187)
T ss_pred C--CCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEee---------------cHHHHHHHHHHHHHcCCceEE
Confidence 4 6999999887 433 5799999999999999998421 11234556778899999 777
Q ss_pred EeeeecCCCCcceeee
Q psy8370 226 KSEKVTGMPKSLFKIY 241 (256)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (256)
+.......+...+..|
T Consensus 158 ~v~is~~~~lg~~~~~ 173 (187)
T COG2242 158 QVQISRGKPLGGGTMF 173 (187)
T ss_pred EEEeecceeccCeeEe
Confidence 7766555554444333
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.61 E-value=4e-14 Score=115.92 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|||+|||+|.++..++..... +++++|+|+.+++.+++++...+... .+...|..... .+ .||+|+++-
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~~~--~~--~fDlIvsNP 269 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG-EVFASNVFSDI--KG--RFDMIISNP 269 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccccc--CC--CccEEEECC
Confidence 34568999999999999999877643 89999999999999999988765444 66777765432 23 799999998
Q ss_pred hhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 159 VLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 159 ~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|.. .......+++++.+.|+|||.++++.+
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 77753 224567899999999999999999743
No 84
>PTZ00146 fibrillarin; Provisional
Probab=99.60 E-value=1.6e-13 Score=108.29 Aligned_cols=142 Identities=13% Similarity=-0.010 Sum_probs=95.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC---CCCCCCce
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKY 151 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~---~~~~~~~~ 151 (256)
..+.++.+|||+|||+|.++..++.... ..|++||+++.+.+...+..... .++ .++..|+.... .... ++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI-~~I~~Da~~p~~y~~~~~--~v 203 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNI-VPIIEDARYPQKYRMLVP--MV 203 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCC-EEEECCccChhhhhcccC--CC
Confidence 3567889999999999999999987742 38999999987654444433322 366 78888876432 1223 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH----HHHHHhcCCcEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF----CLLFSKANLKCVKS 227 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~gf~~~~~ 227 (256)
|+|++... . +++...++.++.++|||||.|++...... .....+++++ .+.|+++||++++.
T Consensus 204 DvV~~Dva---~-pdq~~il~~na~r~LKpGG~~vI~ika~~----------id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 204 DVIFADVA---Q-PDQARIVALNAQYFLKNGGHFIISIKANC----------IDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred CEEEEeCC---C-cchHHHHHHHHHHhccCCCEEEEEEeccc----------cccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 99999864 1 24445677789999999999999521111 1111223332 37889999998877
Q ss_pred eeecCCCCc
Q psy8370 228 EKVTGMPKS 236 (256)
Q Consensus 228 ~~~~~~~~~ 236 (256)
.....+...
T Consensus 270 v~L~Py~~~ 278 (293)
T PTZ00146 270 LTLEPFERD 278 (293)
T ss_pred EecCCccCC
Confidence 654444443
No 85
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.59 E-value=5.5e-14 Score=107.71 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
...++||||+|.|..+..++ ..+.+|+++|.|+.|....+++ .+...+..++..... +||+|.|.+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k---------g~~vl~~~~w~~~~~--~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK---------GFTVLDIDDWQQTDF--KFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC---------CCeEEehhhhhccCC--ceEEEeehhhh
Confidence 56789999999999999984 5666999999999997766654 334445555544444 89999999999
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC------------ccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------------NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
..- +....+|+.+++.|+|+|.+++.-...-.+. ..++.....+.-....+.+.++.+||+++...
T Consensus 162 DRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 162 DRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred hcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 888 4556899999999999999999632111110 01222233333344556688999999999988
Q ss_pred eecCCCCccee
Q psy8370 229 KVTGMPKSLFK 239 (256)
Q Consensus 229 ~~~~~~~~~~~ 239 (256)
+-....+....
T Consensus 240 r~PYLcEGD~~ 250 (265)
T PF05219_consen 240 RLPYLCEGDLY 250 (265)
T ss_pred ccCccccCccc
Confidence 87776654433
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.59 E-value=8.7e-14 Score=106.13 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=97.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
......++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ .++ .++.+|+.+..+... +.
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v-~~~~~d~~~~l~~~~-~~ 111 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNI-VLIKGEAPEILFTIN-EK 111 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCe-EEEEechhhhHhhcC-CC
Confidence 3446778899999999999999988764 22 389999999999999999987665 356 788888876533221 37
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
||.|++.... .....+++.+.+.|+|||.+++.... ..+..+....++++||.....+
T Consensus 112 ~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 112 FDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVIDAIL---------------LETVNNALSALENIGFNLEITE 169 (198)
T ss_pred CCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEEEeec---------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 9999985421 34467999999999999999874210 1134677788889998654433
No 87
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=3.1e-14 Score=109.02 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=82.1
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.....++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+ .++ .+..+|..+..+... +|
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-~~~~~d~~~~~~~~~--~f 143 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-EVYHGDGKRGLEKHA--PF 143 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-EEEECCcccCCccCC--Cc
Confidence 3356678899999999999998887653 2389999999999999999987665 236 888999877655444 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++..++.+++ +++.+.|+|||.+++.
T Consensus 144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 144 DAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 9999998877664 3577899999999885
No 88
>PLN03075 nicotianamine synthase; Provisional
Probab=99.59 E-value=3e-14 Score=112.82 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCCHhHHH-HHHhc-CC-eEEEEeCCHHHHHHHHHHHHh-cC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKY-LLAKH-FD-KIDLLEQSSKFIEQAKEEILK-DC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~-l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~-~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.++.+|+|||||.|.++.. +++.. .. +++++|+++.+++.|++.+.. .+ .++ .|..+|+.+...... .||+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV-~F~~~Da~~~~~~l~--~FDl 198 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRM-FFHTADVMDVTESLK--EYDV 198 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCc-EEEECchhhcccccC--CcCE
Confidence 3789999999998755443 33333 22 799999999999999999854 32 467 999999988654334 7999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|++. +++++..++..++++++++.|+|||.+++..
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999 8888865677899999999999999999963
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=6.2e-14 Score=115.54 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=91.5
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC----CCc
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC----DKL 131 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~i 131 (256)
++...+....+++-..+ +.....+|||+|||+|.++..++.+++. +|+++|+|+.+++.+++++...+ .++
T Consensus 208 Fs~~~LD~GtrllL~~l----p~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 208 FSRTGLDIGARFFMQHL----PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred cCCCCcChHHHHHHHhC----CcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceE
Confidence 33444444455555555 3334579999999999999999887643 89999999999999999986543 145
Q ss_pred ceEEEccccccCCCCCCCceeEEEechhhhc---cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 132 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF---ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 132 ~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+...|...... .. +||+|+|+--+|. +++....++++.+++.|+|||.++++.
T Consensus 284 -~~~~~D~l~~~~-~~--~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 -EFMINNALSGVE-PF--RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -EEEEccccccCC-CC--CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 677777654322 23 7999999854442 444556789999999999999999974
No 90
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.58 E-value=2.4e-13 Score=107.75 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.+|||+|||+|.++..++..... .++|+|+++.+++.++.+....+. ++ .+..+|+.+.. ... +||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~d~~~~~-~~~--~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-TFLQSDWFEPL-PGG--KFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE-EEEECchhccC-cCC--ceeEEEECC
Confidence 4569999999999999999876433 899999999999999999876553 46 88999987643 233 799999852
Q ss_pred h------hhccCH------------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 159 V------LMFILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 159 ~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
- .+.+.. .....+++.+.+.|+|||.+++... ....+++.
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------~~~~~~~~ 226 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------YDQGEAVR 226 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------ccHHHHHH
Confidence 1 121211 1234788999999999999998521 12346788
Q ss_pred HHHHhcCCcEEEeee
Q psy8370 215 LLFSKANLKCVKSEK 229 (256)
Q Consensus 215 ~~l~~~gf~~~~~~~ 229 (256)
++++++||+.+....
T Consensus 227 ~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 227 ALFEAAGFADVETRK 241 (251)
T ss_pred HHHHhCCCCceEEEe
Confidence 999999998776543
No 91
>PRK14968 putative methyltransferase; Provisional
Probab=99.57 E-value=3.5e-13 Score=102.09 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---cceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK---LDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+.. + .+...|+.+... .. +||+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~--~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGV-EVIRSDLFEPFR-GD--KFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcce-EEEecccccccc-cc--CceEEEE
Confidence 5678999999999999999988854 8999999999999999988765422 5 778888766433 22 6999998
Q ss_pred chhhhcc-------------------CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHH
Q psy8370 157 QWVLMFI-------------------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 217 (256)
Q Consensus 157 ~~~l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (256)
+..+... ....+..+++++.++|+|||.+++.... ....+++..++
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~---------------~~~~~~l~~~~ 161 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS---------------LTGEDEVLEYL 161 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc---------------cCCHHHHHHHH
Confidence 7443221 0133567899999999999998875311 12346788999
Q ss_pred HhcCCcEEEeee
Q psy8370 218 SKANLKCVKSEK 229 (256)
Q Consensus 218 ~~~gf~~~~~~~ 229 (256)
.++||++.....
T Consensus 162 ~~~g~~~~~~~~ 173 (188)
T PRK14968 162 EKLGFEAEVVAE 173 (188)
T ss_pred HHCCCeeeeeee
Confidence 999998876553
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=6.2e-14 Score=107.84 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=82.6
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....++.+|||||||+|.++..++.... .+|+++|+++.+++.+++++...+ .++ .+..+|.....+... +|
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v-~~~~gd~~~~~~~~~--~f 146 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNV-EVIVGDGTLGYEENA--PY 146 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEECCcccCCCcCC--Cc
Confidence 344577889999999999999988876632 389999999999999999998765 357 899999876654444 89
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++......++ +.+.+.|||||.+++.
T Consensus 147 D~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 147 DRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 9999987765552 3466789999999985
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=8.1e-14 Score=107.67 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=82.1
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCcee
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.....++.+|||||||+|.++..++..... +|+++|+++.+++.+++++...+ .++ .++.+|..+...... +||
T Consensus 72 ~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v-~~~~~d~~~~~~~~~--~fD 148 (215)
T TIGR00080 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNV-IVIVGDGTQGWEPLA--PYD 148 (215)
T ss_pred HhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCe-EEEECCcccCCcccC--CCC
Confidence 335678899999999999999998776532 59999999999999999998766 356 889999876554444 799
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++.....++ .+.+.+.|+|||.+++.
T Consensus 149 ~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 99988665544 24577899999999985
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=1.9e-14 Score=109.34 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC-CCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE-DLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~-~~~~~~D~V~~ 156 (256)
....+|||||||+|.++..++..... .++|+|+++.+++.++++....+ .++ .++.+|+.+.... ...+++|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni-~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNL-HVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCE-EEEccCHHHHHHhhCCCCceeEEEE
Confidence 35679999999999999999887643 89999999999999999887654 367 8999999765421 11137999998
Q ss_pred chhhhccCH------HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILD------EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....+... -....++++++++|||||.+++.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 754332211 01146899999999999999986
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.4e-13 Score=112.97 Aligned_cols=130 Identities=15% Similarity=-0.016 Sum_probs=98.4
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.....++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.++...+ .++ .+..+|+.+++.... +||+|
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i-~~~~~D~~~l~~~~~--~~D~I 252 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDF-FVKRGDATKLPLSSE--SVDAI 252 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCC-eEEecchhcCCcccC--CCCEE
Confidence 33567788999999999999988766665 89999999999999999988665 345 788999998776544 89999
Q ss_pred Eechhh------h-ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 155 WIQWVL------M-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 155 ~~~~~l------~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
+++--+ . +...+....+++++.++|+|||.+++..+. ..++...++.+|| ++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------RIDLESLAEDAFR-VVKR 313 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------CCCHHHHHhhcCc-chhe
Confidence 996211 1 111133578999999999999999885211 1245678999999 7654
Q ss_pred e
Q psy8370 228 E 228 (256)
Q Consensus 228 ~ 228 (256)
.
T Consensus 314 ~ 314 (329)
T TIGR01177 314 F 314 (329)
T ss_pred e
Confidence 4
No 96
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.55 E-value=1e-12 Score=98.05 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=119.4
Q ss_pred hhhHHHHHHHHhccCCCCCCC-eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKT-RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI 139 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~ 139 (256)
....+.|.+++ .... +|||||||||..+.+++...+. ...-.|+++......+......+ .++...+..|+
T Consensus 12 ~pIl~vL~~~l------~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYL------PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hHHHHHHHHHh------CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 34445666666 3344 5999999999999999887654 56668999888777776665543 34445666676
Q ss_pred cccCCC-C-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcc----------ccCCC
Q psy8370 140 QDFKPE-D-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------YDDED 203 (256)
Q Consensus 140 ~~~~~~-~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~ 203 (256)
...... . ..++||.|++.+++|-.+.+....+++.+.+.|++||.|++..+....+... +....
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 554211 1 1248999999999999999999999999999999999999976655544321 11112
Q ss_pred C-ceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceee
Q psy8370 204 S-SVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKI 240 (256)
Q Consensus 204 ~-~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 240 (256)
. .=.++.+++.++..++|++.++. ...|.+..-+
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~---~~MPANN~~L 200 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED---IDMPANNLLL 200 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc---cccCCCCeEE
Confidence 1 22368899999999999997654 4566554443
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.54 E-value=6.8e-13 Score=106.41 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||+|||+|.++..++.... .+++++|+|+.+++.|+++....+ .++ .++.+|+.+..+ .. +||+|++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i-~~~~~D~~~~~~-~~--~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRV-TLIQSDLFAALP-GR--KYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECchhhccC-CC--CccEEEE
Confidence 3457999999999999999987653 389999999999999999988765 356 889999865432 23 6999998
Q ss_pred ch------hh-------hccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 157 QW------VL-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 157 ~~------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
+- .+ .+-|. +....+++.+.+.|+|||.+++... .+.+.+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g-----------------~~~~~v 258 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG-----------------NSMEAL 258 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------cCHHHH
Confidence 61 11 11111 2346789999999999999998521 123577
Q ss_pred HHHHHhcCCcEEEe
Q psy8370 214 CLLFSKANLKCVKS 227 (256)
Q Consensus 214 ~~~l~~~gf~~~~~ 227 (256)
.+++.++||.....
T Consensus 259 ~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 259 EEAYPDVPFTWLEF 272 (284)
T ss_pred HHHHHhCCCceeee
Confidence 88999999877543
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.54 E-value=7e-13 Score=109.56 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++....+.++ .++++|+.+...... ++||+|+++--
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV-~fi~gDl~e~~l~~~-~~FDLIVSNPP 328 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARV-EFAHGSWFDTDMPSE-GKWDIIVSNPP 328 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcE-EEEEcchhccccccC-CCccEEEECCC
Confidence 45699999999999999887654 3389999999999999999988766667 899999865432211 37999999621
Q ss_pred h------h-------ccC--------H--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 160 L------M-------FIL--------D--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 160 l------~-------~~~--------~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
. . +-| + +....+++.+.+.|+|||.+++.-.. ...+.+.++
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------~Q~e~V~~l 392 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------DQGAAVRGV 392 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------------cHHHHHHHH
Confidence 0 0 000 0 12457888889999999998874211 124678899
Q ss_pred HHhcCCcEEEee
Q psy8370 217 FSKANLKCVKSE 228 (256)
Q Consensus 217 l~~~gf~~~~~~ 228 (256)
+++.||..++..
T Consensus 393 l~~~Gf~~v~v~ 404 (423)
T PRK14966 393 LAENGFSGVETL 404 (423)
T ss_pred HHHCCCcEEEEE
Confidence 999999876654
No 99
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.53 E-value=1.5e-13 Score=109.94 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC----CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+..+|||+|||+|.++..++.... ..++|+|+|+.+++.|+++. .++ .+..+|+.+++..++ +||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~-~~~~~d~~~lp~~~~--sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQV-TFCVASSHRLPFADQ--SLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCC-eEEEeecccCCCcCC--ceeEEE
Confidence 3557899999999999998876532 26899999999999998763 245 788999988876655 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+...- ..+++++++|||||.+++..+.
T Consensus 157 ~~~~~---------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 157 RIYAP---------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EecCC---------CCHHHHHhhccCCCEEEEEeCC
Confidence 86531 2457899999999999997543
No 100
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.52 E-value=5e-14 Score=104.39 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=88.9
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
.++..+. ..+++..|.|+|||.+.++..+ ..+. .|+.+|+-+. +- .+..+|+...|.++
T Consensus 62 ~iI~~l~----~~~~~~viaD~GCGdA~la~~~-~~~~-~V~SfDLva~--------------n~-~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 62 VIIEWLK----KRPKSLVIADFGCGDAKLAKAV-PNKH-KVHSFDLVAP--------------NP-RVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHC----TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-S--------------ST-TEEES-TTS-S--T
T ss_pred HHHHHHH----hcCCCEEEEECCCchHHHHHhc-ccCc-eEEEeeccCC--------------CC-CEEEecCccCcCCC
Confidence 3444444 4456689999999999999776 3444 7999998753 22 56889999998877
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+ ++|+++++.+|... ++..+++++.|+|||||.|.|.+...... +.+++.+.++..||++..
T Consensus 121 ~--svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf~-------------~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 121 E--SVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSRFE-------------NVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp T---EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S--------------HHHHHHHHHCTTEEEEE
T ss_pred C--ceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecccCc-------------CHHHHHHHHHHCCCeEEe
Confidence 7 99999999998887 45679999999999999999986433332 568899999999999987
Q ss_pred eeeecCCCCcceeeeEEEecc
Q psy8370 227 SEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~ 247 (256)
.+ ...+.|..+.+....
T Consensus 183 ~d----~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 183 KD----ESNKHFVLFEFKKIR 199 (219)
T ss_dssp EE------STTEEEEEEEE-S
T ss_pred cc----cCCCeEEEEEEEEcC
Confidence 54 234566666665333
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.52 E-value=6.4e-13 Score=101.24 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=78.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC-CCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK-PEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~-~~~~~~~~D~V 154 (256)
...++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+ .++ .++.+|+.+.. .... .+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~--~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNV-EVIEGSAPECLAQLAP--APDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCe-EEEECchHHHHhhCCC--CCCEE
Confidence 566788999999999999998875532 389999999999999999987654 356 78888876532 1112 35766
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.... .....+++++.+.|+|||.+++..
T Consensus 114 ~~~~~------~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 114 CIEGG------RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEECC------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 55321 234679999999999999999863
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=1e-13 Score=96.72 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+ .++ .++.+|+.+.......++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRV-EVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTE-EEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceE-EEEECchhhchhhccCceeEEEEECCC
Confidence 46899999999999999988884599999999999999999988764 466 899999988762222248999999844
Q ss_pred hhccC------HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFIL------DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.... ......+++++.+.|+|||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 43221 1235679999999999999999863
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.50 E-value=5.6e-13 Score=102.85 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=80.9
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.....++.+|||+|||+|..+..++.... +++++|+++.+++.+++++...+ .++ .+..+|..+..+... +||+|
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~--~fD~I 148 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRHGDGWKGWPAYA--PFDRI 148 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEECCcccCCCcCC--CcCEE
Confidence 33567789999999999999988766654 89999999999999999988765 346 888888765433334 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++...++++ .+.+.+.|+|||.+++..
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 998766555 245678999999999863
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1.8e-12 Score=104.16 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=95.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHH-hcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEIL-KDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+|||+|..+..++.... .+++++|+|+.+++.++++.. ....++ .+...|+.+... . ++||+|+
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i-~~~~~d~~~~~~-~--~~fD~Iv 180 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGDWFEPLP-G--GRFDLIV 180 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcE-EEEEccccCcCC-C--CceeEEE
Confidence 445678999999999999999987763 389999999999999999987 222456 888888855432 2 3799999
Q ss_pred echh------hhccC------------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 156 IQWV------LMFIL------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 156 ~~~~------l~~~~------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
++-- ++.+. .+....+++++.+.|+|||.+++... ....+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------~~~~~ 244 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------YDQGE 244 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------chHHH
Confidence 8521 11110 02346788999999999999998421 01235
Q ss_pred HHHHHHHhcCCcEEEe
Q psy8370 212 QFCLLFSKANLKCVKS 227 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~ 227 (256)
++.+++.+.||..+..
T Consensus 245 ~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 245 AVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHhCCCceeEE
Confidence 6888999999985554
No 105
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.50 E-value=1.8e-12 Score=110.51 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=109.8
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
...++..++ ......++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+ .++ .+..+|+.+..
T Consensus 282 ~e~l~~~vl-~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v-~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARAL-EWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNV-TFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHH-HHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEeChHHhh
Confidence 344455454 44455677899999999999999998776 489999999999999999987655 356 89999987643
Q ss_pred CC--CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 144 PE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 144 ~~--~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
.. ...++||+|+++---. .....++.+.+ ++|++.++++.+..... .++ ..|.+.|
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCnp~tla---------------RDl-~~L~~~g 416 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCNPATLA---------------RDA-GVLVEAG 416 (443)
T ss_pred hhhhhhcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeChHHhh---------------ccH-HHHhhCC
Confidence 21 0013799999862211 12244555554 68999999985443332 122 3455789
Q ss_pred CcEEEeeeecCCCCcceeeeEEEec
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
|++.+......+|.+.+-..+..|+
T Consensus 417 Y~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 417 YRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred cEEEEEEEeccCCCCCcEEEEEEEE
Confidence 9999999888888877766665553
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.49 E-value=6e-13 Score=103.89 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....+|||+|||+|.++..++.+. ..+|+++|+++.+++.+++++. ++ .++.+|+.++... . +||+|+++-
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v-~~v~~D~~e~~~~-~--kFDlIIsNP 134 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EA-EWITSDVFEFESN-E--KFDVVISNP 134 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CC-EEEECchhhhccc-C--CCcEEEEcC
Confidence 345799999999999998887654 3489999999999999988642 45 8899999887532 3 799999987
Q ss_pred hhhccCHHH------------------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 159 VLMFILDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 159 ~l~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
-+.+.+..+ +.+++.....+|+|+|.+++.-...+. + .-..++++++++++++
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----y-----~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----Y-----DGTMKSNKYLKWSKQT 205 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----c-----cccCCHHHHHHHHHhc
Confidence 666654321 245667778888999977775111100 0 1125789999999999
Q ss_pred CCcEE
Q psy8370 221 NLKCV 225 (256)
Q Consensus 221 gf~~~ 225 (256)
||...
T Consensus 206 g~~~~ 210 (279)
T PHA03411 206 GLVTY 210 (279)
T ss_pred CcEec
Confidence 99764
No 107
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=2.7e-12 Score=103.90 Aligned_cols=125 Identities=16% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++....+ .++ .++.+|+.+..+ .. +||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i-~~~~~D~~~~l~-~~--~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRV-TLIESDLFAALP-GR--RYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcE-EEEECchhhhCC-CC--CccEEEECC
Confidence 36899999999999999987653 389999999999999999988765 357 899999865433 23 799999861
Q ss_pred ------hh-------hccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 159 ------VL-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 159 ------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.+ .+.|. +....+++.+.+.|+|||.+++... .+.+++..
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-----------------~~~~~~~~ 272 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-----------------NSRVHLEE 272 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------cCHHHHHH
Confidence 11 11111 2346789999999999999998421 11245777
Q ss_pred HHHhcCCcEEEe
Q psy8370 216 LFSKANLKCVKS 227 (256)
Q Consensus 216 ~l~~~gf~~~~~ 227 (256)
++.+.||.....
T Consensus 273 ~~~~~~~~~~~~ 284 (307)
T PRK11805 273 AYPDVPFTWLEF 284 (307)
T ss_pred HHhhCCCEEEEe
Confidence 888888766443
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=3.8e-12 Score=100.31 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech-
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~- 158 (256)
.+.+|||+|||+|.++..++.... .+++++|+|+.+++.++++....+ + .++.+|+.+.......++||+|+++-
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~-~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--G-TVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C-EEEEeechhhcchhcCCCEeEEEECCC
Confidence 346899999999999999876543 389999999999999999987643 4 78888887644321113799999872
Q ss_pred -----hhhccCH------------------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 159 -----VLMFILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 159 -----~l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
.+..+++ +-...+++.+.+.|+|||.+++.... ....++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------~~~~~v~~ 226 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------RQAPLAVE 226 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------------chHHHHHH
Confidence 1122211 12457888889999999999986211 12457888
Q ss_pred HHHhcCCcEEEee
Q psy8370 216 LFSKANLKCVKSE 228 (256)
Q Consensus 216 ~l~~~gf~~~~~~ 228 (256)
+++++||......
T Consensus 227 ~l~~~g~~~~~~~ 239 (251)
T TIGR03704 227 AFARAGLIARVAS 239 (251)
T ss_pred HHHHCCCCceeeE
Confidence 9999999776544
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.8e-13 Score=98.26 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=88.4
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+...+.++.+|||||||+|+.+..|++... +|+.+|..+...+.|++++...+. ++ .+.++|-...-+... +||.
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV-~v~~gDG~~G~~~~a--PyD~ 141 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENV-TVRHGDGSKGWPEEA--PYDR 141 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCce-EEEECCcccCCCCCC--CcCE
Confidence 444688999999999999999999977665 999999999999999999998873 67 899999877666555 8999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+.......+|.. +.+.|++||.+++...
T Consensus 142 I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 9999988888643 5678899999999643
No 110
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.48 E-value=2.8e-13 Score=99.60 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=88.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC----CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCc
Q psy8370 108 DLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 183 (256)
Q Consensus 108 ~~vD~s~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 183 (256)
+|+|+|+.|++.|+++.+... .++ .++++|+.+++..++ +||+|++..++++++ +...++++++++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~--~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCI-EWIEGDAIDLPFDDC--EFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCce-EEEEechhhCCCCCC--CeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 489999999999987765321 356 899999999877665 899999999999994 56789999999999999
Q ss_pred EEEEEecccCCCCc--------------c---ccCCCCce---------eeCHHHHHHHHHhcCCcEEEeee
Q psy8370 184 IIIIKDNVASGVKN--------------E---YDDEDSSV---------VRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 184 ~l~i~~~~~~~~~~--------------~---~~~~~~~~---------~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.+++.+........ . .......+ ..+++++.++++++||+.+....
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 99998765432110 0 00001111 24889999999999999876553
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=2.5e-12 Score=98.55 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--------CCCCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PEDLN 148 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--------~~~~~ 148 (256)
..++.+|||||||+|.++..+++... ..|+++|+++ +. .. .++ .++++|+.+.. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v-~~i~~D~~~~~~~~~i~~~~~~-- 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGV-DFLQGDFRDELVLKALLERVGD-- 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCc-EEEecCCCChHHHHHHHHHhCC--
Confidence 46678999999999999999888753 3899999988 21 11 246 88999988753 223
Q ss_pred CceeEEEechhhhccCHH---------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDE---------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++||+|+++.+.++.... ....+++.+.++|+|||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 379999998665544221 1246899999999999999995
No 112
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.47 E-value=4.3e-12 Score=102.10 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred CeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEccccccCCCCCCCceeEEEec--
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQ-- 157 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~i~~~~~~d~~~~~~~~~~~~~D~V~~~-- 157 (256)
.+|||+|||+|.++..++.... .+++++|+|+.+++.++++....+. ++ .++.+|+.+..+ .. +||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v-~~~~~d~~~~~~-~~--~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRV-EFIQSNLFEPLA-GQ--KIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEECchhccCc-CC--CccEEEECCC
Confidence 6999999999999999987654 3899999999999999999886652 36 889999876432 22 69999986
Q ss_pred -----------hhhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 158 -----------WVLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 158 -----------~~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
.+..|-|. .....+++.+.+.|+|||.+++.... ...+.+.++
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~----------------~q~~~~~~~ 255 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN----------------WQQKSLKEL 255 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc----------------cHHHHHHHH
Confidence 12222221 24667899999999999999985211 112456677
Q ss_pred HH-hcCCcEEEee
Q psy8370 217 FS-KANLKCVKSE 228 (256)
Q Consensus 217 l~-~~gf~~~~~~ 228 (256)
+. ..||..+...
T Consensus 256 ~~~~~~~~~~~~~ 268 (284)
T TIGR00536 256 LRIKFTWYDVENG 268 (284)
T ss_pred HHhcCCCceeEEe
Confidence 77 4688655543
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.47 E-value=1.8e-12 Score=116.03 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNV 137 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~ 137 (256)
|.+..++++..+. ++.+|||+|||+|.++..++..|..+|++||+|+.+++.+++++...+. ++ .++.+
T Consensus 525 Dqr~~R~~~~~~~-------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v-~~i~~ 596 (702)
T PRK11783 525 DHRPTRRMIGQMA-------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH-RLIQA 596 (702)
T ss_pred HHHHHHHHHHHhc-------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce-EEEEc
Confidence 3444455554444 4689999999999999999887777899999999999999999986652 46 89999
Q ss_pred cccccCCCCCCCceeEEEech-----------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQW-----------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
|+.++..... ++||+|++.- ..... .....++..+.++|+|||.+++.......
T Consensus 597 D~~~~l~~~~-~~fDlIilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~~~~~~------------ 661 (702)
T PRK11783 597 DCLAWLKEAR-EQFDLIFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSNNKRGF------------ 661 (702)
T ss_pred cHHHHHHHcC-CCcCEEEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEeCCccC------------
Confidence 9877542212 3799999861 11111 34567889999999999999886322111
Q ss_pred eeCHHHHHHHHHhcCCcEEEeee
Q psy8370 207 VRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
....+.+.++|+.+.....
T Consensus 662 ----~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 662 ----KMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred ----ChhHHHHHhCCCeEEEEec
Confidence 1126778889998887664
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=107.34 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...+..+||||||+|.++..++...+. .++|+|+++.+++.+.++....+ .++ .++.+|+..+......+++|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV-~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNL-LIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcE-EEEECCHHHhhhhCCCCceeEEEE
Confidence 455679999999999999999887644 89999999999999999887765 466 889999876532111248999998
Q ss_pred chhhhccCHH----HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDE----DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....+.... ....+++.++++|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 7543322111 1257999999999999999996
No 115
>PRK00811 spermidine synthase; Provisional
Probab=99.46 E-value=6.8e-13 Score=106.38 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEccccccCCCCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
+++.+||+||||+|..+..+++. +..+|++||+++.+++.|++.+... ..++ +++.+|...+..... ++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~-~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-ELVIGDGIKFVAETE-NSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCce-EEEECchHHHHhhCC-Cccc
Confidence 45789999999999999998876 4568999999999999999988632 2467 889999877654322 4899
Q ss_pred EEEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|++...-...+... ...+++.+++.|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999975433222211 256889999999999998874
No 116
>KOG3010|consensus
Probab=99.45 E-value=2.9e-13 Score=101.85 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=75.6
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
.++|+|||+|..++.++. .+++|+|+|+|+.|++.+++..+..- ... .+...+..++.-.+. +.|+|++...+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae-~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~-~ms~~~~v~L~g~e~--SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAE-HYKEVIATDVSEAMLKVAKKHPPVTYCHTPS-TMSSDEMVDLLGGEE--SVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHH-hhhhheeecCCHHHHHHhhcCCCcccccCCc-cccccccccccCCCc--ceeeehhhhhHH
Confidence 899999999977777654 47799999999999999988754321 112 334444445544444 999999999999
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+. ++..+.+.++|+|+++|-++..-+.
T Consensus 112 WF---dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WF---DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hh---chHHHHHHHHHHcCCCCCEEEEEEc
Confidence 99 5678999999999988855555333
No 117
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.44 E-value=9.7e-13 Score=100.19 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP 144 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~ 144 (256)
....++ +.....++.+|||||||+|+.+..++....+ .|+++|.++...+.|++++...+. ++ .+..+|.....+
T Consensus 60 ~~a~~l-~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv-~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARML-EALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNV-EVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHH-HHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSE-EEEES-GGGTTG
T ss_pred HHHHHH-HHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCce-eEEEcchhhccc
Confidence 344444 4556889999999999999999998776432 699999999999999999997663 56 889999876655
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... +||.|++......+|. .+.+.|++||.+++.-
T Consensus 138 ~~a--pfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 EEA--PFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GG---SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred cCC--CcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 555 8999999988776642 2667899999999853
No 118
>KOG1541|consensus
Probab=99.44 E-value=3.2e-12 Score=94.88 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-CCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-~~~~~~~~~D~V~~~~~ 159 (256)
.+.-|||||||+|..+..+...|. ..+|+|+|+.|++.|.+. .-++ .++.+|+-+. ++.++ .||.|++...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~-e~eg----dlil~DMG~GlpfrpG--tFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVER-ELEG----DLILCDMGEGLPFRPG--TFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHh-hhhc----CeeeeecCCCCCCCCC--ccceEEEeee
Confidence 588999999999999999988885 899999999999999873 2223 6788888654 44444 9999998866
Q ss_pred hhcc---------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFI---------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++ |...+..++..++.+|++|+..++.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 5543 3345667888999999999999985
No 119
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.42 E-value=4.3e-12 Score=105.85 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEccccccCCC--CCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPE--DLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~~~~~~d~~~~~~~--~~~~~~D~V~ 155 (256)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+. ++ .++.+|+.+.... ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v-~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA-EFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE-EEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999887666666999999999999999999987652 46 8999999876421 1113799999
Q ss_pred echhhh-----ccCH--HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLM-----FILD--EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~-----~~~~--~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++--.. .+.. .....+++.+.++|+|||.+++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 872110 0000 23556777889999999999975
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=3.5e-12 Score=103.34 Aligned_cols=104 Identities=20% Similarity=0.117 Sum_probs=80.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCce
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+.....++.+|||||||+|.++..++.... ..|+++|+++.+++.|++++...+ .++ .++.+|..+..+... +|
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV-~~i~gD~~~~~~~~~--~f 150 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENV-IFVCGDGYYGVPEFA--PY 150 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEeCChhhcccccC--Cc
Confidence 334567789999999999999999877543 269999999999999999887665 346 788888876655444 79
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|++......++ ..+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 9999986655442 23567899999988853
No 121
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.42 E-value=8e-12 Score=101.98 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=100.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+. +|+|+|+++.+++.++++....+ .++ +++.+|+.++..... +.||+|+++-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v-~~~~~D~~~~~~~~~-~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNV-QFQALDSTQFATAQG-EVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEcCHHHHHHhcC-CCCeEEEECC
Confidence 3568999999999999999988764 99999999999999999987765 356 899999987654221 2699999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
- .......+.+....++|++.++++.+..... .++..+ .||++........+|.+.+
T Consensus 249 P-----r~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~---------------rd~~~l---~~y~~~~~~~~DmFP~T~H 305 (315)
T PRK03522 249 P-----RRGIGKELCDYLSQMAPRFILYSSCNAQTMA---------------KDLAHL---PGYRIERVQLFDMFPHTAH 305 (315)
T ss_pred C-----CCCccHHHHHHHHHcCCCeEEEEECCcccch---------------hHHhhc---cCcEEEEEEEeccCCCCCe
Confidence 2 1111122223334468888888874333221 233333 5999999888888888777
Q ss_pred eeeEEEec
Q psy8370 239 KIYMFALK 246 (256)
Q Consensus 239 ~~~~~~l~ 246 (256)
-..+..++
T Consensus 306 vE~v~~l~ 313 (315)
T PRK03522 306 YEVLTLLV 313 (315)
T ss_pred EEEEEEEE
Confidence 66666554
No 122
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.41 E-value=4.5e-12 Score=85.99 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=81.0
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC-CCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~-~~~~~~~D~V~~~~~l~ 161 (256)
+++|+|||.|..+..++.....+++++|+++.+++.+++...... .++ .+...|+.+... ... ++|+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGDAEELPPEADE--SFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccce-EEEEcChhhhccccCC--ceEEEEEcccee
Confidence 589999999999999877444599999999999998885433222 345 888889887764 333 799999999988
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+. .+....+++.+.+.|+|||.+++.
T Consensus 78 ~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 74 256678999999999999999875
No 123
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.41 E-value=4.8e-12 Score=102.95 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-------C---CcceEEEcccccc-----CCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-------D---KLDKCYNVGIQDF-----KPE 145 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~i~~~~~~d~~~~-----~~~ 145 (256)
++.+|||||||-|.-+.-+...+...++|+|+++..++.|++++.... . -...++.+|.... ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999998887776667777799999999999999999993211 1 1125566665422 111
Q ss_pred CCCCceeEEEechhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 DLNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. ...||+|-|.+++|+. +.+....+|+.+.+.|+|||.|+.+.
T Consensus 142 ~-~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 142 R-SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp T-TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 2489999999999988 55677789999999999999999974
No 124
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.41 E-value=5.2e-12 Score=99.44 Aligned_cols=110 Identities=27% Similarity=0.324 Sum_probs=89.3
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
......+..+|+|||+|+|.++..+++..+. +++.+|. |..++.+++ ..++ .+..+|+.+..| .+|+
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv-~~~~gd~f~~~P-----~~D~ 161 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRV-EFVPGDFFDPLP-----VADV 161 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTE-EEEES-TTTCCS-----SESE
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----cccc-ccccccHHhhhc-----cccc
Confidence 4445677789999999999999999888765 8999999 778888887 3578 999999983322 3899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCC--cEEEEEecccCCCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKN--GIIIIKDNVASGVK 196 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~ 196 (256)
+++.+++|.+++++...+|+++++.|+|| |.|+|.+...+...
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999 99999987665543
No 125
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.9e-12 Score=97.99 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~ 135 (256)
++...+....++|-+.+ ......+|||+|||.|.++..+++..+. +++.+|+|..+++.++++...++.....++
T Consensus 138 FS~~~lD~GS~lLl~~l----~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~ 213 (300)
T COG2813 138 FSRDKLDKGSRLLLETL----PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVW 213 (300)
T ss_pred CcCCCcChHHHHHHHhC----CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEE
Confidence 44455555556666555 4555669999999999999999888754 999999999999999999987653221455
Q ss_pred EccccccCCCCCCCceeEEEechhhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..|..+... + +||+|+|+=-+|.= ...-..++++...+.|++||.|.++-+
T Consensus 214 ~s~~~~~v~--~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPVE--G--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eeccccccc--c--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 666544332 2 79999999544422 112235799999999999999999854
No 126
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.40 E-value=1.6e-11 Score=92.91 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--------CCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PED 146 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--------~~~ 146 (256)
....++.+|||+|||+|.++..++.... .+++++|+|+.+ . . .++ .+...|+.+.. ...
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-~-~~i-~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-I-ENV-DFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-C-CCc-eEEEeeCCChhHHHHHHHHhCC
Confidence 3567889999999999999998877653 279999999864 1 1 245 77888876543 122
Q ss_pred CCCceeEEEechhh--------hccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 147 LNIKYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 ~~~~~D~V~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++||+|++.... ++... .....+++.++++|+|||.+++.
T Consensus 97 --~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 --DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 379999986431 22111 23467999999999999999985
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=99.39 E-value=1.1e-11 Score=100.63 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--H---h---cCCCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEI--L---K---DCDKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~---~---~~~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
..+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.. . . ...++ +++.+|..++..... +.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-~vvi~Da~~fL~~~~-~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-NVHVCDAKEFLSSPS-SL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-EEEECcHHHHHHhcC-CC
Confidence 456799999999999999887754 359999999999999999731 1 1 12567 889999887654322 47
Q ss_pred eeEEEechhhh---ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 151 YDVIWIQWVLM---FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 151 ~D~V~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
||+|++...-. ....---..+++.+++.|+|||.+++...... ........+.+.++++|+.+...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-----------~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-----------DAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-----------hhHHHHHHHHHHHHHhCCceEEE
Confidence 99999884211 11111124689999999999999987521100 00001133678889999988765
Q ss_pred eeecCCCCcceeeeE
Q psy8370 228 EKVTGMPKSLFKIYM 242 (256)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (256)
..........|...+
T Consensus 296 ~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 296 HTIVPSFGTDWGFHI 310 (374)
T ss_pred EEecCCCCCceEEEE
Confidence 544333333344443
No 128
>PRK04457 spermidine synthase; Provisional
Probab=99.38 E-value=4e-12 Score=100.72 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|||||||+|.++..++..... ++++||+++.+++.|++.+.... .++ .++.+|..+...... ++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv-~v~~~Da~~~l~~~~-~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERF-EVIEADGAEYIAVHR-HSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCce-EEEECCHHHHHHhCC-CCCCEEEE
Confidence 45689999999999999998776533 89999999999999999886432 467 889999876643222 37999998
Q ss_pred chhh-hccCHH-HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVL-MFILDE-DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l-~~~~~~-~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...- ...+.. ....+++.+.+.|+|||.+++.
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 6321 112111 1257999999999999999984
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=3.9e-11 Score=101.88 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++....+..+ .++.+|+.+.......++||.|++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~-~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKA-TVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEcCcccchhhcccCCCCEEEE
Confidence 456789999999999999999988764 389999999999999999998876566 788999876542111137999995
Q ss_pred chh------hh------c-cCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHH
Q psy8370 157 QWV------LM------F-ILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 216 (256)
Q Consensus 157 ~~~------l~------~-~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
..- +. + .... ...++++.+.+.|||||.++.+....... .+.+.+...
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~------------Ene~~v~~~ 387 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE------------ENEQQIKAF 387 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh------------hCHHHHHHH
Confidence 421 11 1 1111 13468999999999999999864222111 234566677
Q ss_pred HHhc-CCcEEE
Q psy8370 217 FSKA-NLKCVK 226 (256)
Q Consensus 217 l~~~-gf~~~~ 226 (256)
++++ +|+++.
T Consensus 388 l~~~~~~~~~~ 398 (427)
T PRK10901 388 LARHPDAELLD 398 (427)
T ss_pred HHhCCCCEEec
Confidence 7665 576554
No 130
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.38 E-value=4.7e-12 Score=98.57 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------------------------C
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----------------------------D 129 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----------------------------~ 129 (256)
..++.++||||||+-..-...+...+.+|+..|+++..++..++.+++.+ .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 44577999999999766544444566699999999999887766542210 1
Q ss_pred CcceEEEccccccCCCCC----CCceeEEEechhhhccC--HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCC
Q psy8370 130 KLDKCYNVGIQDFKPEDL----NIKYDVIWIQWVLMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 203 (256)
Q Consensus 130 ~i~~~~~~d~~~~~~~~~----~~~~D~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 203 (256)
.+..++.+|+.+.++... .++||+|++.+.++... .++..+.++++.++|||||.|++...........-....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 243577889887765432 12599999999988773 378899999999999999999997654443322111112
Q ss_pred CceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 204 SSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 204 ~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.....+.+.+++.++++||.+...+.
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 23346899999999999999998774
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.7e-11 Score=95.90 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=90.7
Q ss_pred eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEec--hh
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ--WV 159 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~--~~ 159 (256)
+|||||||+|..+..++..... +|+|+|+|+.+++.|+++....+ .++ .++..|+.+.. . ++||+|+++ ++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~-~~~~~dlf~~~--~--~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRV-LVVQSDLFEPL--R--GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccE-EEEeeeccccc--C--CceeEEEeCCCCC
Confidence 8999999999999999887764 99999999999999999998876 344 34444544333 2 279999988 11
Q ss_pred hh---cc-C-----------------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 160 LM---FI-L-----------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 160 l~---~~-~-----------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
-. +. + .+-...++..+.+.|+|||.+++..... ..+.+.+++.
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~----------------q~~~v~~~~~ 251 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT----------------QGEAVKALFE 251 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC----------------cHHHHHHHHH
Confidence 10 01 0 0246778999999999999999852111 2467889999
Q ss_pred hcC-CcEEEee
Q psy8370 219 KAN-LKCVKSE 228 (256)
Q Consensus 219 ~~g-f~~~~~~ 228 (256)
+.| |..+...
T Consensus 252 ~~~~~~~v~~~ 262 (280)
T COG2890 252 DTGFFEIVETL 262 (280)
T ss_pred hcCCceEEEEE
Confidence 999 5544443
No 132
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=1.8e-11 Score=105.52 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
++.+|||+|||+|.++..++.... .+++++|+|+.+++.|+++....+ .++ .++.+|+.+... .. +||+|+++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v-~~~~~D~~~~~~-~~--~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRI-QIIHSNWFENIE-KQ--KFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccce-eeeecchhhhCc-CC--CccEEEEC
Confidence 346899999999999998876542 389999999999999999987654 356 788888765332 23 79999985
Q ss_pred h--------------hhhccCH----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH
Q psy8370 158 W--------------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF 213 (256)
Q Consensus 158 ~--------------~l~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
- +..+-|. +....+++.+.+.|+|||.+++... ....+.+
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----------------~~q~~~v 277 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----------------FKQEEAV 277 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----------------CchHHHH
Confidence 1 1111111 2345688899999999999988421 1124677
Q ss_pred HHHHHhcCCcEEEee
Q psy8370 214 CLLFSKANLKCVKSE 228 (256)
Q Consensus 214 ~~~l~~~gf~~~~~~ 228 (256)
.+++.+.||..+...
T Consensus 278 ~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 278 TQIFLDHGYNIESVY 292 (506)
T ss_pred HHHHHhcCCCceEEE
Confidence 888999999876554
No 133
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.37 E-value=9.2e-11 Score=91.29 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=119.0
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCC-CCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL-NIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~-~~~~D 152 (256)
....+.+||||.||.|+.....+.... .+|...|+|+..++..++..+..+ .+++.|.++|+.+...... ...++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 345788999999999998888766643 489999999999999999998877 3445899999877643221 23689
Q ss_pred EEEechhhhccCHHH-HHHHHHHHhhhcCCCcEEEEEecccCCCCc----cccCC--CCce---eeCHHHHHHHHHhcCC
Q psy8370 153 VIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN----EYDDE--DSSV---VRSLPQFCLLFSKANL 222 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~--~~~~---~~~~~~~~~~l~~~gf 222 (256)
+++.+..++.+++.+ +...+..+++.+.|||.++.+.......-. .+... ...| .++..++.++++.+||
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 999999999998855 555899999999999999998544433221 11111 1123 3699999999999999
Q ss_pred cEEEeeeecCCCCcceeeeE
Q psy8370 223 KCVKSEKVTGMPKSLFKIYM 242 (256)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (256)
+-+.... .+-..|.|.+
T Consensus 292 ~K~~q~I---D~~GIFTVSl 308 (311)
T PF12147_consen 292 EKIDQRI---DEWGIFTVSL 308 (311)
T ss_pred chhhhee---ccCCceEEEe
Confidence 8554332 2334566654
No 134
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=6.9e-11 Score=100.59 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~ 142 (256)
..++...+ ...++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...+ .++ .+.+.|..+.
T Consensus 241 s~l~~~~l----~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v-~~~~~D~~~~ 315 (434)
T PRK14901 241 AQLVAPLL----DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSI-KILAADSRNL 315 (434)
T ss_pred HHHHHHHh----CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeE-EEEeCChhhc
Confidence 34444444 56678999999999999999987763 2389999999999999999998776 356 8889998876
Q ss_pred CC----CCCCCceeEEEec------hhhhccCH-------HH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCcc
Q psy8370 143 KP----EDLNIKYDVIWIQ------WVLMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198 (256)
Q Consensus 143 ~~----~~~~~~~D~V~~~------~~l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 198 (256)
.. .. ++||.|++. .++.+.++ .+ ..++++++.+.|||||.++.++-.....
T Consensus 316 ~~~~~~~~--~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~--- 390 (434)
T PRK14901 316 LELKPQWR--GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA--- 390 (434)
T ss_pred cccccccc--ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh---
Confidence 52 22 379999974 23333221 11 3578999999999999998763211111
Q ss_pred ccCCCCceeeCHHHHHHHHHhc-CCcEE
Q psy8370 199 YDDEDSSVVRSLPQFCLLFSKA-NLKCV 225 (256)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~-gf~~~ 225 (256)
.+...+...++++ +|++.
T Consensus 391 ---------Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 391 ---------ENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred ---------hHHHHHHHHHHhCCCcEec
Confidence 1345677778776 57754
No 135
>KOG2899|consensus
Probab=99.36 E-value=2e-11 Score=92.01 Aligned_cols=176 Identities=15% Similarity=0.239 Sum_probs=108.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCC---Ccc---------------------
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD---KLD--------------------- 132 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~---~i~--------------------- 132 (256)
....+..+|||||..|.++..++.. ++..+.|+||++..++.|++..+.... .+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3467889999999999999999876 455899999999999999998753210 000
Q ss_pred -----------eEEEccc----cccCCCCCCCceeEEEechh--hhccC--HHHHHHHHHHHhhhcCCCcEEEEEecccC
Q psy8370 133 -----------KCYNVGI----QDFKPEDLNIKYDVIWIQWV--LMFIL--DEDIIKFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 133 -----------~~~~~d~----~~~~~~~~~~~~D~V~~~~~--l~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
.+...+. .++. ......||+|+|..+ +-|++ ++.+..++.+++++|.|||+|++....+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 0111000 0011 011247999998754 34443 37789999999999999999999754443
Q ss_pred CCCc------cccCCCCceeeCHHHHHHHHHhc--CCcEEEeee-ecCCCC--cceeeeEEEeccCCCCCCC
Q psy8370 194 GVKN------EYDDEDSSVVRSLPQFCLLFSKA--NLKCVKSEK-VTGMPK--SLFKIYMFALKPNKDKNSI 254 (256)
Q Consensus 194 ~~~~------~~~~~~~~~~~~~~~~~~~l~~~--gf~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~ 254 (256)
.... .+..........++.+..++.+. ||+-++.-. .....+ -..++.+|..+.....+.|
T Consensus 214 sY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~Kk~~~~~~~i 285 (288)
T KOG2899|consen 214 SYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYRKKLHPKTDAI 285 (288)
T ss_pred HHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeeeccCCCccCcC
Confidence 3221 12222333446788888887765 565443222 122222 2335556655444444443
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.35 E-value=1.3e-11 Score=96.23 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ...++.+|||+|||+|..+..++... ..+++++|+++++.+.|++++...+ .++ +++.+|+.+
T Consensus 57 g~~L~~l~----~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i-~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLV----KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKI-NFIQSDALS 131 (234)
T ss_pred HHHHHHHH----HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEccHHH
Confidence 35555555 34568899999999999888886642 2389999999999999999998766 356 889999876
Q ss_pred cCCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FKPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+. ...++||+|++...- +....+++.+.+.|+|||.+++.+
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k-----~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADK-----PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCH-----HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 5321 101379999986432 344578899999999999888754
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.35 E-value=1.4e-11 Score=91.67 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
....++.+|||||||+|.++..++.++ .+++++|+++.+++.+++++... .++ +++.+|+.++..... .||.|++
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~-~~v-~ii~~D~~~~~~~~~--~~d~vi~ 83 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA-DNL-TVIHGDALKFDLPKL--QPYKVVG 83 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC-CCE-EEEECchhcCCcccc--CCCEEEE
Confidence 346677899999999999999998875 48999999999999999887642 367 899999998876544 6999988
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+--++ +..+.+.++++.. .+.++|.+++.
T Consensus 84 n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 84 NLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 74433 3223333333321 23477888775
No 138
>PLN02366 spermidine synthase
Probab=99.34 E-value=1.2e-10 Score=93.87 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+++||+||||.|..+..+++.. ..+|+.||+++.+++.+++.+... ..++ +++.+|..........+.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-NLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-EEEEChHHHHHhhccCCCCCE
Confidence 557899999999999999997653 348999999999999999988642 2467 899999866543211137999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++...-...+.. --..+++.+++.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9986543222211 1246899999999999999763
No 139
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.33 E-value=1.2e-10 Score=91.26 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--------------------------------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------------------------------- 126 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------------------- 126 (256)
...+.+||--|||.|+++..++..|+ .+.|.|.|--|+-..+-.+..
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 35568999999999999999999999 899999999886554433210
Q ss_pred ---------cCCCcceEEEccccccCCCC-CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC
Q psy8370 127 ---------DCDKLDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 196 (256)
Q Consensus 127 ---------~~~~i~~~~~~d~~~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 196 (256)
...++ ....+|+.+..... ..++||+|+..+.+.-. ..+...++.+.++|||||..+=..+..-...
T Consensus 133 Dv~p~~~~~~~~~~-sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNL-SMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCce-eEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 01223 55566666665443 12489999999777765 6778999999999999997775433222221
Q ss_pred ccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 197 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
..-.....+...+.+|+..+.+..||+++..+.
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 110112234778999999999999999987665
No 140
>KOG3045|consensus
Probab=99.33 E-value=3.6e-11 Score=91.46 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=100.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
...+++.+- ..+....|.|+|||.+.++. .....|+.+|+-+. +- .+..+|+.+.+.
T Consensus 168 ld~ii~~ik----~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~--------------~~-~V~~cDm~~vPl 224 (325)
T KOG3045|consen 168 LDVIIRKIK----RRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV--------------NE-RVIACDMRNVPL 224 (325)
T ss_pred HHHHHHHHH----hCcCceEEEecccchhhhhh----ccccceeeeeeecC--------------CC-ceeeccccCCcC
Confidence 345566555 34677889999999998876 22348999998542 22 678999999888
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
++. +.|+++++.+++-. ++..+++++.|+|++||.++|.+..... -+...+.+.+...||.+
T Consensus 225 ~d~--svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SRf-------------~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 225 EDE--SVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKSRF-------------SDVKGFVRALTKLGFDV 286 (325)
T ss_pred ccC--cccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhhhc-------------ccHHHHHHHHHHcCCee
Confidence 777 99999999887766 4567999999999999999997532222 24567889999999998
Q ss_pred EEeeeecCCCCcceeeeEEE
Q psy8370 225 VKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ 244 (256)
..... ..+.|..+.+.
T Consensus 287 ~~~d~----~n~~F~lfefk 302 (325)
T KOG3045|consen 287 KHKDV----SNKYFTLFEFK 302 (325)
T ss_pred eehhh----hcceEEEEEEe
Confidence 76553 34555555555
No 141
>PRK03612 spermidine synthase; Provisional
Probab=99.32 E-value=2.2e-11 Score=105.61 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHH--HHhc------CCCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEE--ILKD------CDKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~------~~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
+++++|||||||+|..+..+++... .+++++|+++++++.++++ +... +.++ +++.+|..+...... ++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~Da~~~l~~~~-~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-TVVNDDAFNWLRKLA-EK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-EEEEChHHHHHHhCC-CC
Confidence 4578999999999999999887654 5999999999999999983 3221 1467 889999887643222 38
Q ss_pred eeEEEechhhhccCHH---HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 151 YDVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
||+|+++......+.. -...+++.+++.|+|||.+++..... ........++.+.+++.||.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-----------~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-----------YFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-----------ccchHHHHHHHHHHHHcCCE
Confidence 9999998443222110 12358899999999999999852100 00011235678889999993
No 142
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3e-10 Score=82.92 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-.+.+|+|+|||||.++..++..|+.+|++||+++++++.++++......++ .+..+|+.+.. +.+|.|+++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v-~f~~~dv~~~~-----~~~dtvimN 115 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDV-EFVVADVSDFR-----GKFDTVIMN 115 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCce-EEEEcchhhcC-----CccceEEEC
Confidence 445678899999999999999999998899999999999999999998766678 99999998874 268999887
Q ss_pred hhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 158 WVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
=-+-.. ...++ .++..+.+.- -.++-. ... -+.+.+.+....+|+.+....
T Consensus 116 PPFG~~~rhaDr-~Fl~~Ale~s---~vVYsi-----------H~a-----~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 116 PPFGSQRRHADR-PFLLKALEIS---DVVYSI-----------HKA-----GSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCCccccccCCH-HHHHHHHHhh---heEEEe-----------ecc-----ccHHHHHHHHHhcCCeEEEEE
Confidence 222111 11222 3444444332 122211 100 156778889999999888664
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=1.7e-10 Score=98.60 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=92.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+. ++ .+...|+..+.+ .. +||.|
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v-~~~~~Da~~~~~-~~--~fD~V 322 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITII-ETIEGDARSFSP-EE--QPDAI 322 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeE-EEEeCccccccc-CC--CCCEE
Confidence 45677899999999999988877642 23899999999999999999987663 45 888999887653 23 79999
Q ss_pred Eec------hhhh-------ccCHHH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 155 WIQ------WVLM-------FILDED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 155 ~~~------~~l~-------~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
++. .++. +..+++ ...++..+.+.|+|||.++.++...... -+...+.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~------------Ene~~v~ 390 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE------------ENELQIE 390 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh------------hHHHHHH
Confidence 963 1111 122221 2368999999999999999964222211 1234556
Q ss_pred HHHHhc-CCcEE
Q psy8370 215 LLFSKA-NLKCV 225 (256)
Q Consensus 215 ~~l~~~-gf~~~ 225 (256)
.+++.+ +|.+.
T Consensus 391 ~~l~~~~~~~~~ 402 (445)
T PRK14904 391 AFLQRHPEFSAE 402 (445)
T ss_pred HHHHhCCCCEEe
Confidence 667665 46544
No 144
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=5.8e-11 Score=90.18 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEE-c
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYN-V 137 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~-~ 137 (256)
.+..+++..+. ...++++|||||++.|..+.+++..-. .+++.+|+++++.+.|+++++..+ .++ ..+. +
T Consensus 45 ~e~g~~L~~L~----~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i-~~~~~g 119 (219)
T COG4122 45 PETGALLRLLA----RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI-ELLLGG 119 (219)
T ss_pred hhHHHHHHHHH----HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE-EEEecC
Confidence 34556777776 456889999999999999999987654 289999999999999999999876 345 6666 4
Q ss_pred cccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 138 d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|..+.......++||+|+....-... ..+++.+.+.|+|||.+++-.
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~y-----p~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADY-----PEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cHHHHHHhccCCCccEEEEeCChhhC-----HHHHHHHHHHhCCCcEEEEee
Confidence 77665443212589999998654433 579999999999999988743
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.29 E-value=5.1e-11 Score=95.16 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||+||||+|..+..++... ..+++++|+++.+++.+++.+.... .++ +++.+|..+...... ++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v-~i~~~D~~~~l~~~~-~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRV-DLQIDDGFKFLADTE-NTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCce-EEEECchHHHHHhCC-CCccE
Confidence 345699999999999999887765 4589999999999999999875431 345 677777765432211 37999
Q ss_pred EEechhhhccCHHH--HHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++......-+... ...+++.+++.|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99875422221111 357889999999999999984
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=2e-10 Score=98.23 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~ 142 (256)
..++...+ ...++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...+ .++ .+..+|+.+.
T Consensus 239 s~lv~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v-~~~~~D~~~~ 313 (444)
T PRK14902 239 SMLVAPAL----DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNI-ETKALDARKV 313 (444)
T ss_pred HHHHHHHh----CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeCCcccc
Confidence 34455444 45677899999999999999988753 3389999999999999999998766 346 8899998776
Q ss_pred CCCCCCCceeEEEechh------hhcc-------CHHH-------HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 143 KPEDLNIKYDVIWIQWV------LMFI-------LDED-------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~------l~~~-------~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
..... +.||+|++..- +.+. ...+ ...+++.+.+.|||||.++.+.......
T Consensus 314 ~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~------- 385 (444)
T PRK14902 314 HEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE------- 385 (444)
T ss_pred cchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------
Confidence 42111 37999997521 1111 1111 2458999999999999998752111110
Q ss_pred CCceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+...+...++++ +|+++..
T Consensus 386 -----Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 386 -----ENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred -----hhHHHHHHHHHhCCCcEEecc
Confidence 1334556667665 4776553
No 147
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.28 E-value=1.9e-10 Score=96.00 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++++....+ .++ .+..+|+.+...... ++||+|+++=
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~-~~~~~d~~~~~~~~~-~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNL-SFAALDSAKFATAQM-SAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcE-EEEECCHHHHHHhcC-CCCCEEEECC
Confidence 345799999999999999998766 489999999999999999987765 356 899999977653221 2699999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcce
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLF 238 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~ 238 (256)
--..+ ...+++.+. .++|++.++++.+..... .++..+ .||++........+|.+.+
T Consensus 309 Pr~G~----~~~~l~~l~-~~~p~~ivyvsc~p~Tla---------------RDl~~L---~gy~l~~~~~~DmFPqT~H 365 (374)
T TIGR02085 309 PRRGI----GKELCDYLS-QMAPKFILYSSCNAQTMA---------------KDIAEL---SGYQIERVQLFDMFPHTSH 365 (374)
T ss_pred CCCCC----cHHHHHHHH-hcCCCeEEEEEeCHHHHH---------------HHHHHh---cCceEEEEEEeccCCCCCc
Confidence 21111 123445554 478999999874322221 333333 6999999888888887766
Q ss_pred eeeEEEe
Q psy8370 239 KIYMFAL 245 (256)
Q Consensus 239 ~~~~~~l 245 (256)
-..+..+
T Consensus 366 vE~v~ll 372 (374)
T TIGR02085 366 YEVLTLL 372 (374)
T ss_pred EEEEEEE
Confidence 6655544
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.28 E-value=4.8e-11 Score=88.78 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHhcc------CCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC----CCc
Q psy8370 63 QTSNQFLSSLYCQK------KSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC----DKL 131 (256)
Q Consensus 63 ~~~~~~l~~~~~~~------~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i 131 (256)
+++...+.+++... .....+.+|||+|||+|..+..++.. +..+|+.+|.++ .++.++.+.+..+ .++
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 34444555555332 34567899999999999999998887 556999999999 8999999887643 455
Q ss_pred ceEEEccccccC--CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 132 DKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 132 ~~~~~~d~~~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+...|+.+.. ......+||+|+..++++.- +....+++.+.++|+|+|.+++...
T Consensus 100 -~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 100 -SVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred -cCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 66777765422 00112379999999999875 6677899999999999998877643
No 149
>KOG1975|consensus
Probab=99.28 E-value=2.6e-11 Score=95.10 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-------CcceEEEcccccc-----CCCCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-------KLDKCYNVGIQDF-----KPEDL 147 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~i~~~~~~d~~~~-----~~~~~ 147 (256)
++...++|+|||-|.-++.+-..|...++|+||++..++.|+++++.... .. .|+.+|-... ....+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a-~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA-VFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee-EEEEeccchhHHHHhccCCC
Confidence 67889999999999888887788888999999999999999999875421 23 6777775332 22222
Q ss_pred CCceeEEEechhhhcc--CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+||+|-|.+++|+- +.+....+|.++.+.|+|||++|-+.
T Consensus 195 -p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 -PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred -CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 259999999999876 44777889999999999999999873
No 150
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.28 E-value=1.2e-10 Score=92.58 Aligned_cols=109 Identities=18% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++++..+ .++ .+...|...+..... .||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v-~~~~~D~~~~~~~~~--~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNV-AVTNFDGRVFGAAVP--KFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcE-EEecCCHHHhhhhcc--CCCEE
Confidence 456788999999999999998877532 389999999999999999998776 345 788888876654434 69999
Q ss_pred Eech------hhhc-------cCHH-------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQW------VLMF-------ILDE-------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~------~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.. ++.. ..+. ....+|+.+.+.|||||.++.+.
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9642 1111 1111 12459999999999999998763
No 151
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=2.9e-10 Score=96.61 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=95.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceE--EEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKC--YNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~--~~~d~~~~ 142 (256)
..++...+ .+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+..+ .+ ..+|....
T Consensus 227 s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~-~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTI-KAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeccccccc
Confidence 34555555 566789999999999999999877542 489999999999999999998766433 33 55565443
Q ss_pred CCCCCCCceeEEEec------hhhhccCH-------H-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 143 KPEDLNIKYDVIWIQ------WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~------~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
......++||.|++. .++.+.++ . ...++|+++.+.|||||.++.++......
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~------- 374 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE------- 374 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------
Confidence 321111379999964 23443322 1 13579999999999999999874322211
Q ss_pred CCceeeCHHHHHHHHHhc-CCcE
Q psy8370 203 DSSVVRSLPQFCLLFSKA-NLKC 224 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~-gf~~ 224 (256)
-+...+..+++++ +|.+
T Consensus 375 -----Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 375 -----ENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred -----hCHHHHHHHHHhCCCCee
Confidence 2345566677765 4543
No 152
>KOG1499|consensus
Probab=99.27 E-value=4.8e-11 Score=95.15 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=87.0
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
++.....++.|||+|||+|.++.+.++.|+.+|++||-|.-+ +.|++.+..++ .++.+++.+.+++...+.. ++|+
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~e--KVDi 130 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVE--KVDI 130 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCcc--ceeE
Confidence 334467889999999999999999999999899999998766 88999888766 3444889999888865544 8999
Q ss_pred EEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 154 IWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 154 V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i 187 (256)
|++-++-+.+-. ..+...|-.=-+-|+|||.++=
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 999988766632 4455555555788999998763
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.26 E-value=3.8e-11 Score=90.46 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCCH----hHHHHHHh---cC--C-eEEEEeCCHHHHHHHHHHH-------------------Hh----
Q psy8370 80 PGKTRVLDVGAGIGR----ISKYLLAK---HF--D-KIDLLEQSSKFIEQAKEEI-------------------LK---- 126 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~----~~~~l~~~---~~--~-~v~~vD~s~~~~~~a~~~~-------------------~~---- 126 (256)
.+.-+|+..||++|. ++..+.+. .. . +|+|+|+|+.+++.|++-. ..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999996 33333331 12 2 8999999999999997631 00
Q ss_pred ------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 ------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 ------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....+ .|...|+.+..+..+ .||+|+|.+++-+++++...++++.+++.|+|||.|++.
T Consensus 110 ~~v~~~lr~~V-~F~~~NL~~~~~~~~--~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMV-RFRRHNLLDPDPPFG--RFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTE-EEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCce-EEEecccCCCCcccC--CccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00245 788888888333334 799999999999999988899999999999999999996
No 154
>PLN02672 methionine S-methyltransferase
Probab=99.26 E-value=1.6e-10 Score=106.03 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-----------------CCcceEEEccccccC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-----------------DKLDKCYNVGIQDFK 143 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~i~~~~~~d~~~~~ 143 (256)
+.+|||+|||+|..+..++.... .+++++|+|+.+++.|+++...++ .++ .++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV-~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRV-EFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccE-EEEECchhhhc
Confidence 46899999999999999987754 489999999999999999987532 246 88999987655
Q ss_pred CCCCCCceeEEEec--hh------------hhccC-------------------H---HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 144 PEDLNIKYDVIWIQ--WV------------LMFIL-------------------D---EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 144 ~~~~~~~~D~V~~~--~~------------l~~~~-------------------~---~~~~~~l~~~~~~LkpgG~l~i 187 (256)
...+ ..||+|+++ ++ ..+-| . +-..++++++.+.|+|||.+++
T Consensus 198 ~~~~-~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNN-IELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccC-CceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 3211 269999987 11 11100 0 1246788899999999999998
Q ss_pred EecccCCCCccccCCCCceeeCHHHHH-HHHHhcCCcEEEeee
Q psy8370 188 KDNVASGVKNEYDDEDSSVVRSLPQFC-LLFSKANLKCVKSEK 229 (256)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~gf~~~~~~~ 229 (256)
.-.. ...+.+. +++++.||..+....
T Consensus 277 EiG~----------------~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 277 NMGG----------------RPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EECc----------------cHHHHHHHHHHHHCCCCeeEEee
Confidence 5211 1234677 599999998876554
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.26 E-value=9.6e-11 Score=99.90 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
...++..+. ......++.+|||+|||+|.++..++... .+|+|+|+++.+++.+++++...+ .++ .++.+|+.+..
T Consensus 277 ~~~l~~~~~-~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv-~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRAL-EALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANV-EFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHH-HHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCce-EEEeCCHHHHH
Confidence 334444444 34455667899999999999999987654 489999999999999999987665 356 89999987643
Q ss_pred CC--CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 144 PE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 144 ~~--~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
+. ...++||+|++.---..+ ...+++.+.+ ++|++.++++.+.. |...-.+.+.+.|
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~p~----------------tlard~~~l~~~g 412 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCNPA----------------TLARDLEFLCKEG 412 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCCHH----------------HHHHHHHHHHHCC
Confidence 21 111369999975321111 1345555543 78999888853211 1111234566789
Q ss_pred CcEEEeeeecCCCCc
Q psy8370 222 LKCVKSEKVTGMPKS 236 (256)
Q Consensus 222 f~~~~~~~~~~~~~~ 236 (256)
|++........+|..
T Consensus 413 y~~~~~~~~DmFP~T 427 (431)
T TIGR00479 413 YGITWVQPVDMFPHT 427 (431)
T ss_pred eeEEEEEEeccCCCC
Confidence 998887766666643
No 156
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=3.6e-10 Score=95.89 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=86.6
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~ 142 (256)
..++..++ ...++.+|||+|||+|..+.+++... ..+|+++|+++.+++.+++++...+. ++ .+...|...+
T Consensus 226 s~~~~~~l----~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v-~~~~~Da~~l 300 (431)
T PRK14903 226 SQIVPLLM----ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSI-EIKIADAERL 300 (431)
T ss_pred HHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE-EEEECchhhh
Confidence 34454444 56778899999999999999887753 23899999999999999999987763 45 7888998776
Q ss_pred CC-CCCCCceeEEEech------hhhc-------cCHH-------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 143 KP-EDLNIKYDVIWIQW------VLMF-------ILDE-------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 143 ~~-~~~~~~~D~V~~~~------~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+. ..+ +||.|++.. ++.. .+.+ ...++|..+.+.|||||.++.+.
T Consensus 301 ~~~~~~--~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 301 TEYVQD--TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred hhhhhc--cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 52 233 799999642 1211 1111 22567999999999999998864
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.24 E-value=3.9e-11 Score=91.17 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..+. ....+++||||||++|..+.+++.... .+|+.+|+++...+.|++.+...+ .++ +++.+|+.+
T Consensus 34 g~lL~~l~----~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLV----RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRI-EVIEGDALE 108 (205)
T ss_dssp HHHHHHHH----HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-EEEES-HHH
T ss_pred HHHHHHHH----HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcE-EEEEeccHh
Confidence 35666555 335678999999999999999986533 299999999999999999998765 467 899999876
Q ss_pred cCC----CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 142 FKP----EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 142 ~~~----~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
..+ ....+.||+|+....-. ....+++.+.+.|+|||.+++-+..
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~-----~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKR-----NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGG-----GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred hHHHHHhccCCCceeEEEEccccc-----chhhHHHHHhhhccCCeEEEEcccc
Confidence 432 11124799999986533 3356888888999999999875433
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=2.1e-10 Score=86.85 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.++.+|||+|||+|.++..++.++..+|+++|.++.+++.++++++..+ .++ .++.+|+.+...... .+||+|+++=
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v-~~~~~D~~~~l~~~~-~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNA-RVVNTNALSFLAQPG-TPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcE-EEEEchHHHHHhhcC-CCceEEEECC
Confidence 4567999999999999997667777799999999999999999988765 356 889999876543222 2699999874
Q ss_pred hhhccCHHHHHHHHHHHhh--hcCCCcEEEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQ--ILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 189 (256)
-+.. ......++.+.. .|+|+|.+++..
T Consensus 130 Py~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 3211 112344555544 478999988863
No 159
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=95.65 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=95.5
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEE
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYN 136 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~ 136 (256)
.|.+..++.+.... . +++|||+-|-||.++.+.+..|+.+|++||.|..+++.|++++..++ .++ .+++
T Consensus 203 lDqR~~R~~l~~~~------~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~-~~i~ 274 (393)
T COG1092 203 LDQRDNRRALGELA------A-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH-RFIV 274 (393)
T ss_pred HHhHHHHHHHhhhc------c-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce-eeeh
Confidence 45566667776666 3 89999999999999999988888899999999999999999998776 345 8999
Q ss_pred ccccccCCCCC--CCceeEEEech-hhh----c-cC-HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 137 VGIQDFKPEDL--NIKYDVIWIQW-VLM----F-IL-DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 137 ~d~~~~~~~~~--~~~~D~V~~~~-~l~----~-~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.++..... ..+||+|++.= .+. . .. ..+...++..+.++|+|||.++++.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99988754222 13899999761 111 0 11 1456789999999999999999974
No 160
>PLN02476 O-methyltransferase
Probab=99.21 E-value=2.2e-10 Score=90.46 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEcccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDF 142 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~ 142 (256)
+++..+. ...++++|||||+++|..+.+++..-. ..++++|.+++..+.|+++++..+ .++ .++.+|+.+.
T Consensus 108 ~lL~~L~----~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I-~li~GdA~e~ 182 (278)
T PLN02476 108 QLLAMLV----QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKV-NVKHGLAAES 182 (278)
T ss_pred HHHHHHH----HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEcCHHHH
Confidence 4455444 445688999999999999999876421 279999999999999999999876 357 8999998765
Q ss_pred CCC----CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 143 KPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 143 ~~~----~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+. ...++||+|+...-- .....+++.+.+.|+|||.+++-+.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K-----~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK-----RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 431 112479999997542 4456788999999999999887433
No 161
>KOG2940|consensus
Probab=99.21 E-value=7e-12 Score=93.67 Aligned_cols=143 Identities=14% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.....++|||||-|....++...+..+++-+|-|-.|++.++..-. ..... ....+|-+.+++.+. ++|+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i~~-~~~v~DEE~Ldf~en--s~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSIET-SYFVGDEEFLDFKEN--SVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-CceEE-EEEecchhccccccc--chhhhhhhhh
Confidence 4457899999999999999998898899999999999998876522 22233 667888888887766 9999999999
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc--------cccC---CCC--ceeeCHHHHHHHHHhcCCcEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDD---EDS--SVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~~~~---~~~--~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+|+. .++...+.+|...|||+|.|+-+......... ..+. ... +-.....++-.++..+||....
T Consensus 147 lHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 147 LHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 9999 56678999999999999999875322111100 0000 000 1112447788899999998876
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
++
T Consensus 225 vD 226 (325)
T KOG2940|consen 225 VD 226 (325)
T ss_pred ec
Confidence 54
No 162
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.5e-10 Score=86.55 Aligned_cols=100 Identities=19% Similarity=0.335 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
...++.+|+|.|.|+|.++..|+.. +. .+|+.+|+.++..+.|++++...+ +++ .+...|+.+..... .||+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v-~~~~~Dv~~~~~~~---~vDa 166 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV-TLKLGDVREGIDEE---DVDA 166 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce-EEEecccccccccc---ccCE
Confidence 6899999999999999999999853 33 399999999999999999998765 346 77888988776554 5999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+.. +| +.-..++.+++.|+|||.+.+.
T Consensus 167 v~LD-----mp--~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 167 VFLD-----LP--DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred EEEc-----CC--ChHHHHHHHHHHhCCCcEEEEE
Confidence 9885 43 3347999999999999999985
No 163
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=4.8e-10 Score=85.81 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. ++ .++..|+..... .. +||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~-~~~~~D~~~~~~-~~--~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EA-TWINADALTTEF-DT--LFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CC-EEEEcchhcccc-cC--CccEEEE
Confidence 36899999999999999887642 2389999999999999998753 35 889999876543 23 7999999
Q ss_pred chhhh----------ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee-----eCHHHHHHHHHhcC
Q psy8370 157 QWVLM----------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV-----RSLPQFCLLFSKAN 221 (256)
Q Consensus 157 ~~~l~----------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g 221 (256)
+==+. +-...-...+++.+.+++++|+ +++-........ ....+. .+-....+..++.|
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~~~~~y-----~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMSANFRY-----SGTHYFRQDESTTSSKCKKFLDETG 194 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeCcccccCcc-----cCccceeeccCcccHHHHHHHHhcC
Confidence 82111 1111234568888888556555 555322222211 111111 24466778888888
Q ss_pred CcE
Q psy8370 222 LKC 224 (256)
Q Consensus 222 f~~ 224 (256)
+..
T Consensus 195 ~~~ 197 (241)
T PHA03412 195 LEM 197 (241)
T ss_pred eee
Confidence 754
No 164
>KOG3191|consensus
Probab=99.15 E-value=1.1e-08 Score=73.96 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+.-++|||||+|..+.+|+....+ -+.++|+++.+.+...+..+.++.++ ..+..|+..-... + +.|+++.+
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~-~~V~tdl~~~l~~-~--~VDvLvfN 117 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI-DVVRTDLLSGLRN-E--SVDVLVFN 117 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc-ceeehhHHhhhcc-C--CccEEEEC
Confidence 34788999999999999998765332 67889999999999888887776666 7888887765544 3 68888865
Q ss_pred h--h-------------hhcc----CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHH
Q psy8370 158 W--V-------------LMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 218 (256)
Q Consensus 158 ~--~-------------l~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (256)
- + ..+. ..+-..+++..+-.+|.|.|.+++..... -.++++.++++
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---------------N~p~ei~k~l~ 182 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---------------NKPKEILKILE 182 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------cCHHHHHHHHh
Confidence 1 1 1111 11235678888999999999999863222 13578899999
Q ss_pred hcCCcEEEeeeecCCCCcceeeeE
Q psy8370 219 KANLKCVKSEKVTGMPKSLFKIYM 242 (256)
Q Consensus 219 ~~gf~~~~~~~~~~~~~~~~~~~~ 242 (256)
..||.+..........+.++-+.+
T Consensus 183 ~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 183 KKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred hcccceeEEEEEecCCceEEEEEE
Confidence 999988776655555555555444
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.15 E-value=1.6e-09 Score=83.58 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHH-HHHHHHhcCCCcceEEEccccccCCCC---CCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ-AKEEILKDCDKLDKCYNVGIQDFKPED---LNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~~i~~~~~~d~~~~~~~~---~~~~~D~V~ 155 (256)
.++.+|||+|||+|.++..+++.|..+|+++|+++.++.. .++. .++..+...++......+ +-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-----ERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-----CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 4677999999999999999999888899999999977765 2221 122112233333221111 112577776
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe-cccCCCCccccCCCCce------eeCHHHHHHHHHhcCCcEEEee
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD-NVASGVKNEYDDEDSSV------VRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
++.. ..+..+.+.|+| |.+++-- +-+..+..... ..+.. ..-.+++...+.+.||.+....
T Consensus 149 iS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~-~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 149 ISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKN-KKGVVRDKEAIALALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred eehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcC-cCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEE
Confidence 6543 357778899999 6665532 11111110011 11111 1244666777778899887665
Q ss_pred e
Q psy8370 229 K 229 (256)
Q Consensus 229 ~ 229 (256)
.
T Consensus 217 ~ 217 (228)
T TIGR00478 217 F 217 (228)
T ss_pred E
Confidence 3
No 166
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.12 E-value=7.6e-10 Score=88.13 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhc----CC-eEEEEeCCHHHHHHHHHHH------------------Hh-------
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKH----FD-KIDLLEQSSKFIEQAKEEI------------------LK------- 126 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~----~~-~v~~vD~s~~~~~~a~~~~------------------~~------- 126 (256)
..-+|+..||+||. ++..+.+.. .. +|+|+|+|+.+++.|++-. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999996 333333321 12 7999999999999998752 10
Q ss_pred -------cCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 127 -------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 127 -------~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....+ .|...|+.+.+.+.. +.||+|+|.+++.|++++...++++.+++.|+|||.|++.
T Consensus 195 ~~~v~~~lr~~V-~F~~~NL~~~~~~~~-~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYV-DFQQLNLLAKQWAVP-GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccC-EEEcccCCCCCCccC-CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00234 777888876433211 3799999999999999888899999999999999999986
No 167
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.11 E-value=5.3e-10 Score=88.83 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=89.4
Q ss_pred ccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEE
Q psy8370 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCY 135 (256)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~ 135 (256)
-.|.+..++++.... .+++|||+-|-||.++...+..|+.+|+.||.|..+++.+++++..++ .++ .++
T Consensus 108 FlDqR~nR~~v~~~~-------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~-~~~ 179 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRH-RFI 179 (286)
T ss_dssp -GGGHHHHHHHHHHC-------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCE-EEE
T ss_pred cHHHHhhHHHHHHHc-------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccce-EEE
Confidence 456777777777765 478999999999999999888888899999999999999999998665 345 889
Q ss_pred EccccccCCC-CCCCceeEEEec---hhhhccC-HHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 136 NVGIQDFKPE-DLNIKYDVIWIQ---WVLMFIL-DEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 136 ~~d~~~~~~~-~~~~~~D~V~~~---~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..|+.+.... ...++||+|++. +.-.... ..+..+++..+.++|+|||.+++..
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9998765321 112489999976 1100000 1456788999999999999998763
No 168
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=8.5e-10 Score=86.13 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+++..++ ...+.++|||||+++|..+.+++.... .+++.+|.+++..+.|++.+...+ .++ .++.+++.+
T Consensus 68 g~lL~~l~----~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I-~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLL----KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKI-DFREGPALP 142 (247)
T ss_pred HHHHHHHH----HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-EEEeccHHH
Confidence 45666655 345678999999999999999876432 289999999999999999999776 567 899999877
Q ss_pred cCCCC-----CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 142 FKPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 142 ~~~~~-----~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+.. ..++||+|+...-- ......++.+.+.|+|||.+++-
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK-----~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK-----DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH-----HHhHHHHHHHHHhcCCCeEEEEc
Confidence 54321 01489999998552 23456788889999999997764
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.10 E-value=1.6e-09 Score=84.29 Aligned_cols=130 Identities=13% Similarity=0.185 Sum_probs=88.8
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC-CCc
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL-NIK 150 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~-~~~ 150 (256)
.....++.+|||-|+|+|.++..++.... .+|+.+|..++..+.|+++++..+ .++ .+...|+.+..+..+ ...
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v-~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNV-TVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTE-EEEES-GGCG--STT-TTS
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCc-eeEecceecccccccccCc
Confidence 34789999999999999999999986532 299999999999999999999877 345 899999964333211 247
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhc-CCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+|.|+.. +|.+ -.++..+.+.| +|||.+.+..+.. --.......|++.||..++..
T Consensus 114 ~DavfLD-----lp~P--w~~i~~~~~~L~~~gG~i~~fsP~i---------------eQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 114 FDAVFLD-----LPDP--WEAIPHAKRALKKPGGRICCFSPCI---------------EQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEEE-----SSSG--GGGHHHHHHHE-EEEEEEEEEESSH---------------HHHHHHHHHHHHTTEEEEEEE
T ss_pred ccEEEEe-----CCCH--HHHHHHHHHHHhcCCceEEEECCCH---------------HHHHHHHHHHHHCCCeeeEEE
Confidence 9999886 3222 25788899999 8999998741100 012334456778899776544
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.08 E-value=8.4e-10 Score=93.45 Aligned_cols=101 Identities=24% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+..|||+|||+|.++...++.+ ..+|++||-|+.+....+++....+ .++ .++.+|++++..+. ++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V-~vi~~d~r~v~lpe---kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV-TVIHGDMREVELPE---KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE-EEEES-TTTSCHSS----EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE-EEEeCcccCCCCCC---ceeEE
Confidence 5789999999999998776654 3499999999998888777655443 577 99999999998755 59999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++-.+-.....+.....|....+.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99866444433444567888899999998776
No 171
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.08 E-value=2.1e-09 Score=76.59 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=92.6
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC--C
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--P 144 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~--~ 144 (256)
+.+.+........+.-|||+|.|||.++..++++|.+ .++++|+|++......+.+.. . .++.+|+.++. .
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~-~ii~gda~~l~~~l 110 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----V-NIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----c-cccccchhhHHHHH
Confidence 3333334456788889999999999999999999854 899999999999988887754 3 56888877665 1
Q ss_pred -CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 -EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 -~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.....||.|+|..-+-.+|.....++++.+...|.+||.++..
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11124799999998888888888889999999999999999875
No 172
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.05 E-value=1.7e-09 Score=89.92 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=94.4
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC--------------C
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED--------------L 147 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~--------------~ 147 (256)
.+|||++||+|.++..++. ++.+|+++|.++.+++.++++....+ .++ .++.+|+.+..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v-~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGIDNV-QIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCCcE-EEEECCHHHHHHHHhhccccccccccccc
Confidence 5799999999999997754 45699999999999999999987665 356 89999987643210 0
Q ss_pred CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...||+|+..=--.-+ ...+++.+.+ |++.++++.+.... ..++..+ .+ ||++...
T Consensus 286 ~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~p~tl---------------arDl~~L-~~-gY~l~~v 341 (362)
T PRK05031 286 SYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCNPETL---------------CENLETL-SQ-THKVERF 341 (362)
T ss_pred CCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeCHHHH---------------HHHHHHH-cC-CcEEEEE
Confidence 0148999986211111 1234444443 78888887433111 2344433 33 9999998
Q ss_pred eeecCCCCcceeeeEEEec
Q psy8370 228 EKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~ 246 (256)
.....+|...+-..+..+.
T Consensus 342 ~~~DmFPqT~HvE~v~lL~ 360 (362)
T PRK05031 342 ALFDQFPYTHHMECGVLLE 360 (362)
T ss_pred EEcccCCCCCcEEEEEEEE
Confidence 8888888877776666554
No 173
>KOG3987|consensus
Probab=99.05 E-value=5.7e-11 Score=87.44 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+.++||+|+|.|..+..++ ..+.+|+++|.|..|....+++ .+-.....++...+- ++|+|.|...
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk---------~ynVl~~~ew~~t~~--k~dli~clNl 178 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK---------NYNVLTEIEWLQTDV--KLDLILCLNL 178 (288)
T ss_pred CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc---------CCceeeehhhhhcCc--eeehHHHHHH
Confidence 446899999999999999984 4455899999999998887664 233334444444334 7999999998
Q ss_pred hhccCHHHHHHHHHHHhhhcCC-CcEEEEEecccCCCCc-------------cccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNK-NGIIIIKDNVASGVKN-------------EYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
+..- .+.-++++.++.+|+| +|..+++-........ .++..+..+......+.++++.+||.+.
T Consensus 179 LDRc--~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987|consen 179 LDRC--FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVE 256 (288)
T ss_pred HHhh--cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhh
Confidence 8766 3445899999999999 8988886221111110 1122222333344556778999999998
Q ss_pred EeeeecCCC
Q psy8370 226 KSEKVTGMP 234 (256)
Q Consensus 226 ~~~~~~~~~ 234 (256)
...+-....
T Consensus 257 awTrlPYLC 265 (288)
T KOG3987|consen 257 AWTRLPYLC 265 (288)
T ss_pred hhhcCCeec
Confidence 776655544
No 174
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=99.05 E-value=5.9e-09 Score=83.25 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~ 142 (256)
.+.+.++- .......+.+|||+|||+|..+..+... ...+++++|.|+.|++.++..+..... ...........+.
T Consensus 19 ~~vl~El~-~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 19 YRVLSELR-KRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHHHH-HhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence 35566665 3334556789999999999876655332 234899999999999999988765431 1101111111111
Q ss_pred CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC
Q psy8370 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 222 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf 222 (256)
... . ..|+|++.++|..++......+++.+.+.+++ .|+++++..+.+.. ...+.++.+.+.|+
T Consensus 98 ~~~-~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~-----------~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 98 LPF-P--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFR-----------RIAEARDQLLEKGA 161 (274)
T ss_pred ccC-C--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHH-----------HHHHHHHHHhhCCC
Confidence 111 1 35999999999999888888899999888876 88887665555432 34566777777777
Q ss_pred cEEEeee
Q psy8370 223 KCVKSEK 229 (256)
Q Consensus 223 ~~~~~~~ 229 (256)
.++.-..
T Consensus 162 ~v~APCp 168 (274)
T PF09243_consen 162 HVVAPCP 168 (274)
T ss_pred ceECCCc
Confidence 7775443
No 175
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.04 E-value=2.9e-09 Score=79.82 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC-CCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~-~~~~~~D~V~~~~~ 159 (256)
...++|||||=+....... ...+ .|+.+|++++ .- .+.+.|+.+.+.+ .+.+.||+|.++.+
T Consensus 51 ~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~--------------~~-~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ--------------HP-GILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ccceEEeecccCCCCcccc-cCce-eeEEeecCCC--------------CC-CceeeccccCCCCCCcccceeEEEEEEE
Confidence 3479999999877665542 2234 6999999873 11 5688888777543 22358999999999
Q ss_pred hhccCH-HHHHHHHHHHhhhcCCCcE-----EEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 160 LMFILD-EDIIKFLNLCKQILNKNGI-----IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 160 l~~~~~-~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
+.++|. .++-..++.+++.|+|+|. ++++-+ . .....+.+.+.+.|..++...||..+..+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~-----~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---L-----PCVTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---c-----hHhhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 999986 6788899999999999999 777622 1 122345567889999999999999987654
No 176
>KOG2904|consensus
Probab=99.04 E-value=8.2e-09 Score=79.51 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=83.1
Q ss_pred cccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceE
Q psy8370 58 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKC 134 (256)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~ 134 (256)
++.+.++.-+.+-+.+ .+.....+..+||+|||+|..+..++..... .++++|.|+.++..|.++..... +++ .+
T Consensus 126 PRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i-~v 203 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI-EV 203 (328)
T ss_pred cCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce-EE
Confidence 4444444433333333 2223344568999999999999998765433 89999999999999999988654 345 55
Q ss_pred EEcccc----ccCCCCCCCceeEEEec--hhh----hcc--------C----------HHHHHHHHHHHhhhcCCCcEEE
Q psy8370 135 YNVGIQ----DFKPEDLNIKYDVIWIQ--WVL----MFI--------L----------DEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 135 ~~~d~~----~~~~~~~~~~~D~V~~~--~~l----~~~--------~----------~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
++.+++ +..+.. .+.+|+++++ ++. ..+ + .+.+..++.-+.|.|+|||.+.
T Consensus 204 ~~~~me~d~~~~~~l~-~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLL-EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred Eecccccccccccccc-cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 544333 222111 2489999987 110 000 0 0235556777899999999999
Q ss_pred EEe
Q psy8370 187 IKD 189 (256)
Q Consensus 187 i~~ 189 (256)
+..
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 864
No 177
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.03 E-value=4.9e-09 Score=79.38 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC---CCCCCCceeEEEe
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK---PEDLNIKYDVIWI 156 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~---~~~~~~~~D~V~~ 156 (256)
...+||||||.|.++..+|...+. .++|+|+....+..+..+....+ .++ .++.+|+.... ..+ +++|-|+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv-~~~~~da~~~l~~~~~~--~~v~~i~i 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNV-RFLRGDARELLRRLFPP--GSVDRIYI 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSE-EEEES-CTTHHHHHSTT--TSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccce-EEEEccHHHHHhhcccC--CchheEEE
Confidence 348999999999999999888765 99999999999999988888766 567 89999987742 223 38999998
Q ss_pred chhhhccCH------HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILD------EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+-=-+... ---..+++.++++|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 743211110 01246999999999999999986
No 178
>PRK04148 hypothetical protein; Provisional
Probab=99.03 E-value=9.7e-09 Score=71.83 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEcCCCCH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
...++.+++|||||+|. .+..|++.|. +|+++|+++..++.+++. .+ .++.+|+.+....-- ..+|+|++
T Consensus 13 ~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~-~~v~dDlf~p~~~~y-~~a~liys 83 (134)
T PRK04148 13 EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GL-NAFVDDLFNPNLEIY-KNAKLIYS 83 (134)
T ss_pred ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CC-eEEECcCCCCCHHHH-hcCCEEEE
Confidence 34456899999999996 8888887787 999999999998888765 24 789999987765422 35899998
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. |+.+++..+.++++.+ |.-+++.
T Consensus 84 ir-----pp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 63 3345556666666644 4456664
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.03 E-value=2.9e-09 Score=88.14 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=101.3
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI 139 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~ 139 (256)
+......++..+. +..... +.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++....+ .++ .++.+|+
T Consensus 179 N~~~~~~l~~~v~-~~~~~~-~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v-~~~~~d~ 254 (353)
T TIGR02143 179 NAAVNIKMLEWAC-EVTQGS-KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNV-QIIRMSA 254 (353)
T ss_pred CHHHHHHHHHHHH-HHhhcC-CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcE-EEEEcCH
Confidence 3333444555544 222222 347999999999999987554 4599999999999999999988765 356 8999998
Q ss_pred cccCCCC---------C-----CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCc
Q psy8370 140 QDFKPED---------L-----NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 205 (256)
Q Consensus 140 ~~~~~~~---------~-----~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 205 (256)
.++.... . ...||+|+..=-=.- ....+++.+. +|++.++++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~p~tl----------- 316 (353)
T TIGR02143 255 EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCNPETL----------- 316 (353)
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcCHHHH-----------
Confidence 7754310 0 013798887521001 1123444443 478999987433222
Q ss_pred eeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEec
Q psy8370 206 VVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246 (256)
Q Consensus 206 ~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 246 (256)
..++..+. .||++........+|...+-..+..+.
T Consensus 317 ----aRDl~~L~--~~Y~l~~v~~~DmFP~T~HvE~v~lL~ 351 (353)
T TIGR02143 317 ----KANLEQLS--ETHRVERFALFDQFPYTHHMECGVLLE 351 (353)
T ss_pred ----HHHHHHHh--cCcEEEEEEEcccCCCCCcEEEEEEEE
Confidence 13343333 359999988888888877776666554
No 180
>KOG1500|consensus
Probab=99.02 E-value=6.3e-09 Score=82.37 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=83.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCcee
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
++.....++.|||+|||+|.++...+..|+++|++||-| +|.+.|++....+. .++ .++.+.+++...++ +.|
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI-tVI~GKiEdieLPE---k~D 245 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI-TVIPGKIEDIELPE---KVD 245 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE-EEccCccccccCch---hcc
Confidence 344456788999999999999999999999999999985 57899999887654 567 88899998887665 489
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++.-+-..+-.+......-.+++.|+|+|..+=+
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 999875544442233233334567999999987643
No 181
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.3e-08 Score=81.82 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=103.0
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEc-cccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNV-GIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~-d~~~~~~~~ 146 (256)
+.+.+-+.....++..|||--||||.++..+.-.|. .++|.|++..|++-++.+++..+ ... .+... |+..++...
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~-~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDY-PVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCce-eEEEecccccCCCCC
Confidence 333333555778889999999999999999877777 89999999999999999998765 333 34555 999998665
Q ss_pred CCCceeEEEechh------hhccC-HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 147 LNIKYDVIWIQWV------LMFIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 147 ~~~~~D~V~~~~~------l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
. ++|.|++.-- ..-.. ++-..++++.++++|++||.+++..+ ......+.+
T Consensus 263 ~--~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--------------------~~~~~~~~~ 320 (347)
T COG1041 263 N--SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP--------------------RDPRHELEE 320 (347)
T ss_pred C--ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--------------------CcchhhHhh
Confidence 5 7999997611 11111 23467899999999999999998632 112345677
Q ss_pred cCCcEEEeeeec
Q psy8370 220 ANLKCVKSEKVT 231 (256)
Q Consensus 220 ~gf~~~~~~~~~ 231 (256)
.||.++......
T Consensus 321 ~~f~v~~~~~~~ 332 (347)
T COG1041 321 LGFKVLGRFTMR 332 (347)
T ss_pred cCceEEEEEEEe
Confidence 899998765443
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.00 E-value=2.1e-09 Score=85.94 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=61.9
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
+.....++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.. .++ .++.+|+.+++...- .+|.|
T Consensus 36 ~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v-~~i~~D~~~~~~~~~--~~~~v 109 (272)
T PRK00274 36 DAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNL-TIIEGDALKVDLSEL--QPLKV 109 (272)
T ss_pred HhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--Cce-EEEEChhhcCCHHHc--CcceE
Confidence 333566788999999999999999988876 899999999999999987643 467 899999988754322 24777
Q ss_pred Eec
Q psy8370 155 WIQ 157 (256)
Q Consensus 155 ~~~ 157 (256)
+++
T Consensus 110 v~N 112 (272)
T PRK00274 110 VAN 112 (272)
T ss_pred EEe
Confidence 776
No 183
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=81.04 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=99.5
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
.....+.+|||-..|-|+.+...+++|+..|+.+|.++..++.|.-+-=..+ ..+ +++.+|..+......+.+||+
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i-~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAI-KIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccccc-EEecccHHHHHhcCCccccce
Confidence 3456789999999999999999999998899999999999988865421111 345 889999887765433458999
Q ss_pred EEec---hhhh-ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 154 IWIQ---WVLM-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 154 V~~~---~~l~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
|+-. +++. .+ --..+.++++|+|+|||.++-.......-.... --+..+.+-|+++||+++...
T Consensus 209 IiHDPPRfS~AgeL---YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~--------d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 209 IIHDPPRFSLAGEL---YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL--------DLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred EeeCCCccchhhhH---hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC--------ChhHHHHHHHHhcCceeeeee
Confidence 9854 1111 22 124689999999999999987532222111111 124667889999999977644
No 184
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.99 E-value=6.7e-09 Score=79.94 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCC-CCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~-~~~~D~V~~~~ 158 (256)
...+||||||.|.+...+|.+.+. .++|||+....+..|.+.+...+. ++ .+++.|+........ .++.|-|+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nl-ri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNL-RLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcE-EEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 468999999999999999988876 899999999999999999998887 88 999999877653221 23899999875
Q ss_pred hhhcc------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFI------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-=-|- ..=-...+++.+.++|+|||.|.+.
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 42111 1111246999999999999999996
No 185
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.98 E-value=1e-08 Score=80.74 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhc-----CC-eEEEEeCCHHHHHHHHHHHH-------------------hcC---
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKH-----FD-KIDLLEQSSKFIEQAKEEIL-------------------KDC--- 128 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~-----~~-~v~~vD~s~~~~~~a~~~~~-------------------~~~--- 128 (256)
..-+|+-.||+||. ++..+.+.+ +. +|+|+|+|..+++.|+.-.- ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 334443333 12 89999999999999865320 000
Q ss_pred --------CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 129 --------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 129 --------~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+ .|...|+....+.. +.||+|+|.+++-++..+...++++..+..|+|||.|++..
T Consensus 176 y~v~~~ir~~V-~F~~~NLl~~~~~~--~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMV-RFRRHNLLDDSPFL--GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhccc-EEeecCCCCCcccc--CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 123 56666665555333 37999999999999998888899999999999999999963
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.98 E-value=5.9e-09 Score=78.63 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC--CCCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE--DLNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~--~~~~~~D~V~ 155 (256)
..+.+|||++||+|.++..++.+|+..|++||.++.+++.+++++...+ .++ .++..|+.+.... .....+|+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~-~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQA-EVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccE-EEEehhHHHHHHHhhccCCCceEEE
Confidence 3578999999999999999999998899999999999999999988665 246 7899998654321 1111478888
Q ss_pred echhhhccCHHHHHHHHHHH--hhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLC--KQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~i~ 188 (256)
..=-+..- ....+++.+ ...|+++|.+++.
T Consensus 127 ~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 127 LDPPFFNG---ALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred ECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEE
Confidence 75222211 122334433 3468888887775
No 187
>PLN02823 spermine synthase
Probab=98.98 E-value=4e-09 Score=86.11 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||.||+|.|..+.++++.. ..++++||+++.+++.+++.+... ..++ +++.+|...+..... ++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv-~v~~~Da~~~L~~~~-~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRL-ELIINDARAELEKRD-EKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCce-EEEEChhHHHHhhCC-CCccE
Confidence 356899999999999999887753 458999999999999999987532 2567 889999887754322 48999
Q ss_pred EEechhhhcc---CHH--HHHHHHH-HHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFI---LDE--DIIKFLN-LCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~---~~~--~~~~~l~-~~~~~LkpgG~l~i~ 188 (256)
|++... ... +.. --..+++ .+.+.|+|||.+++.
T Consensus 180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998732 110 000 0135777 899999999998763
No 188
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=4.7e-09 Score=83.31 Aligned_cols=84 Identities=12% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
+..++ +.....++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++... .++ .++.+|+.+.+. .
T Consensus 18 ~~~iv-~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~-~~v-~ii~~D~~~~~~--~- 90 (258)
T PRK14896 18 VDRIV-EYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAA-GNV-EIIEGDALKVDL--P- 90 (258)
T ss_pred HHHHH-HhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccC-CCE-EEEEeccccCCc--h-
Confidence 44444 333566789999999999999999988854 8999999999999999887542 367 889999987653 2
Q ss_pred CceeEEEechhh
Q psy8370 149 IKYDVIWIQWVL 160 (256)
Q Consensus 149 ~~~D~V~~~~~l 160 (256)
.+|.|+++--.
T Consensus 91 -~~d~Vv~NlPy 101 (258)
T PRK14896 91 -EFNKVVSNLPY 101 (258)
T ss_pred -hceEEEEcCCc
Confidence 47999887543
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.93 E-value=7.2e-09 Score=83.33 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~ 146 (256)
+.+++ +.....++.+|||||||+|.++..++..+. +++++|+++.+++.+++++...+ .++ .++.+|+.+...
T Consensus 25 ~~~Iv-~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v-~ii~~Dal~~~~-- 99 (294)
T PTZ00338 25 LDKIV-EKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKL-EVIEGDALKTEF-- 99 (294)
T ss_pred HHHHH-HhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcE-EEEECCHhhhcc--
Confidence 44444 344567789999999999999999987765 89999999999999999987543 467 899999977643
Q ss_pred CCCceeEEEec
Q psy8370 147 LNIKYDVIWIQ 157 (256)
Q Consensus 147 ~~~~~D~V~~~ 157 (256)
. .||.|+++
T Consensus 100 ~--~~d~VvaN 108 (294)
T PTZ00338 100 P--YFDVCVAN 108 (294)
T ss_pred c--ccCEEEec
Confidence 2 58988876
No 190
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.93 E-value=2.6e-08 Score=75.71 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=93.4
Q ss_pred EEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 85 VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
|.||||..|.+...|++++.. .++++|+++..++.|++++...+ .++ .++.+|-.+...+.. ..|.|+...+-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i-~~rlgdGL~~l~~~e--~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRI-EVRLGDGLEVLKPGE--DVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTE-EEEE-SGGGG--GGG-----EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccE-EEEECCcccccCCCC--CCCEEEEecCCH
Confidence 689999999999999998854 89999999999999999999776 456 888888544333222 378888876644
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeee
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIY 241 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 241 (256)
. ....+|+.....++....|++..+ .....+++.+.++||.+++....... ...|.+.
T Consensus 78 ~----lI~~ILe~~~~~~~~~~~lILqP~-----------------~~~~~LR~~L~~~gf~I~~E~lv~e~-~~~YeIi 135 (205)
T PF04816_consen 78 E----LIIEILEAGPEKLSSAKRLILQPN-----------------THAYELRRWLYENGFEIIDEDLVEEN-GRFYEII 135 (205)
T ss_dssp H----HHHHHHHHTGGGGTT--EEEEEES-----------------S-HHHHHHHHHHTTEEEEEEEEEEET-TEEEEEE
T ss_pred H----HHHHHHHhhHHHhccCCeEEEeCC-----------------CChHHHHHHHHHCCCEEEEeEEEeEC-CEEEEEE
Confidence 2 356788888888877778887521 13468899999999999987643322 2345554
Q ss_pred EEE
Q psy8370 242 MFA 244 (256)
Q Consensus 242 ~~~ 244 (256)
...
T Consensus 136 ~~~ 138 (205)
T PF04816_consen 136 VAE 138 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 191
>KOG3420|consensus
Probab=98.92 E-value=1.9e-09 Score=74.97 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-.+++++|+|||.|.++......+...|.|+|+++++++.++.+......++ .+.++|+.++.+..+ .||.++.+
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-dlLqcdildle~~~g--~fDtaviN 121 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-DLLQCDILDLELKGG--IFDTAVIN 121 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-heeeeeccchhccCC--eEeeEEec
Confidence 446789999999999999988777777799999999999999999988766677 899999998887665 89999987
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
--
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 43
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.91 E-value=3.7e-08 Score=73.69 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=79.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-e---------EEEEeCCHHHHHHHHHHHHhcC--CCcceEEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-K---------IDLLEQSSKFIEQAKEEILKDC--DKLDKCYN 136 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~---------v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~ 136 (256)
+...+.......++..|||.-||+|.+..+.+..+.. . ++|+|+++.+++.+++++...+ ..+ .+..
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-~~~~ 94 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-DFIQ 94 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-EEEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-EEEe
Confidence 3333335556778899999999999999887665532 3 7899999999999999998765 245 7889
Q ss_pred ccccccCCCCCCCceeEEEechhhh-ccC-----HHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 137 VGIQDFKPEDLNIKYDVIWIQWVLM-FIL-----DEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 137 ~d~~~~~~~~~~~~~D~V~~~~~l~-~~~-----~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.|+.+++...+ ++|+|+++-=+- .+. ..-...+++++.+++++...+++
T Consensus 95 ~D~~~l~~~~~--~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 95 WDARELPLPDG--SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp --GGGGGGTTS--BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred cchhhcccccC--CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99999985444 799999982211 011 12345688999999999555554
No 193
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=9.4e-08 Score=77.52 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+|+=+|-|.++..++..+..+|+++|++|.+++..++++..++ ..+ ..+++|..+..+... .+|-|++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v-~~i~gD~rev~~~~~--~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRV-EPILGDAREVAPELG--VADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcccee-eEEeccHHHhhhccc--cCCEEEeC
Confidence 4599999999999999999998887679999999999999999998765 335 789999999987755 79999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCC--cEEEeeeecCCCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL--KCVKSEKVTGMPK 235 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf--~~~~~~~~~~~~~ 235 (256)
..- ....++..+.+.+++||.+...+....... ..+....+.......|+ ++........+..
T Consensus 264 ~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~---------~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP 328 (341)
T COG2520 264 LPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDI---------EERPEKRIKSAARKGGYKVEVLKVRRVKSYSP 328 (341)
T ss_pred CCC------cchhhHHHHHHHhhcCcEEEEEeccchhhc---------ccchHHHHHHHHhhccCcceEEEEEEecccCC
Confidence 553 223677788888999999988654333321 11245667777777765 4444444555555
Q ss_pred cceee
Q psy8370 236 SLFKI 240 (256)
Q Consensus 236 ~~~~~ 240 (256)
..|.+
T Consensus 329 ~v~hv 333 (341)
T COG2520 329 GVYHV 333 (341)
T ss_pred CeeEE
Confidence 44443
No 194
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=2.4e-08 Score=79.16 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=63.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~ 148 (256)
+.+++ +.....++.+|||||||+|.++..+++.+. .++++|+++.+++.+++++.. ..++ .++.+|+.+.+..
T Consensus 18 ~~~i~-~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v-~v~~~D~~~~~~~--- 90 (253)
T TIGR00755 18 IQKIV-EAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERL-EVIEGDALKVDLP--- 90 (253)
T ss_pred HHHHH-HhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcE-EEEECchhcCChh---
Confidence 44444 344566789999999999999999988875 799999999999999987754 2366 8899999877653
Q ss_pred Ccee---EEEech
Q psy8370 149 IKYD---VIWIQW 158 (256)
Q Consensus 149 ~~~D---~V~~~~ 158 (256)
.+| +|+++-
T Consensus 91 -~~d~~~~vvsNl 102 (253)
T TIGR00755 91 -DFPKQLKVVSNL 102 (253)
T ss_pred -HcCCcceEEEcC
Confidence 355 666653
No 195
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.90 E-value=6.1e-09 Score=77.94 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC--CCCceeEEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED--LNIKYDVIW 155 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~--~~~~~D~V~ 155 (256)
-++.++||+-||+|.++.+.+.+|+.+|+.||.++.+....++++...+ .+. .++..|+....... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~-~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKI-RVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGE-EEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcce-eeeccCHHHHHHhhcccCCCceEEE
Confidence 4789999999999999999999999999999999999999999998765 235 77888865443211 123899999
Q ss_pred echhhhccCHHHHHHHHHHHh--hhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 189 (256)
+.=-...- .....+++.+. ..|+++|.+++..
T Consensus 120 lDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPYAKG--LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 87222211 11345666665 7889999998864
No 196
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.8e-08 Score=84.88 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=106.1
Q ss_pred ccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEc
Q psy8370 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNV 137 (256)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~ 137 (256)
..+...+..++.... ......++.+|+|+-||.|.++..|+.+. .+|+|+|+++++++.|+++.+.++ .++ .+..+
T Consensus 272 Q~N~~~~ekl~~~a~-~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~-~f~~~ 348 (432)
T COG2265 272 QVNPAVAEKLYETAL-EWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348 (432)
T ss_pred ecCHHHHHHHHHHHH-HHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcE-EEEeC
Confidence 333344445555555 45566778999999999999999997544 499999999999999999998877 456 99999
Q ss_pred cccccCCCC-CCCceeEEEechhhhccCHHHHH-HHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHH
Q psy8370 138 GIQDFKPED-LNIKYDVIWIQWVLMFILDEDII-KFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 215 (256)
Q Consensus 138 d~~~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (256)
+.++..... ....+|+|+.. -|..... .+++.+. .++|..+++++.+..... .=..
T Consensus 349 ~ae~~~~~~~~~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVSCNP~Tla----------------RDl~ 406 (432)
T COG2265 349 DAEEFTPAWWEGYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVSCNPATLA----------------RDLA 406 (432)
T ss_pred CHHHHhhhccccCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEeCCHHHHH----------------HHHH
Confidence 998887543 11368999976 1112222 3444444 457888999975433322 2235
Q ss_pred HHHhcCCcEEEeeeecCCCCc
Q psy8370 216 LFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 216 ~l~~~gf~~~~~~~~~~~~~~ 236 (256)
.|.+.|+.+.+......+|-.
T Consensus 407 ~L~~~gy~i~~v~~~DmFP~T 427 (432)
T COG2265 407 ILASTGYEIERVQPFDMFPHT 427 (432)
T ss_pred HHHhCCeEEEEEEEeccCCCc
Confidence 777889988877766666643
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.88 E-value=3.2e-08 Score=77.71 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCceeE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
+.+.+||-||.|.|..+..+++.. ..++++||+++.+++.|++.+... ..++ +++.+|...+........||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~-~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV-RIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE-EEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce-EEEEhhhHHHHHhccCCcccE
Confidence 468999999999999999987654 359999999999999999987642 2467 889999887765444127999
Q ss_pred EEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+....-...+.. --..+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9986332111111 1246899999999999999985
No 198
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.88 E-value=4.4e-08 Score=79.35 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEE-ccccccCCC--CCCCceeE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYN-VGIQDFKPE--DLNIKYDV 153 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~--~~i~~~~~-~d~~~~~~~--~~~~~~D~ 153 (256)
.+.++||||||+|.....++.+.+. +++|+|+++.+++.|++++... + .++ .+.. .+..+.... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I-~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI-RLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE-EEEEccchhhhhhcccccCCceEE
Confidence 5689999999999888777665332 8999999999999999999876 3 345 5543 333332211 11237999
Q ss_pred EEechhhhccCHHH---HHHHHHH----------------HhhhcCCCcEEEEEecccCCCCccccCCCCce------ee
Q psy8370 154 IWIQWVLMFILDED---IIKFLNL----------------CKQILNKNGIIIIKDNVASGVKNEYDDEDSSV------VR 208 (256)
Q Consensus 154 V~~~~~l~~~~~~~---~~~~l~~----------------~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~~ 208 (256)
|+|+==++.-..+. -..-.+. ..+++.+||.+-+.......... +......+ .-
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~-~~~~~gwftsmv~kk~ 271 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKA-FAKQVLWFTSLVSKKE 271 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHH-HHhhCcEEEEEeeccC
Confidence 99983332221110 0111111 22344567766554322222111 11111111 12
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q psy8370 209 SLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 209 ~~~~~~~~l~~~gf~~~~~~ 228 (256)
+...+.+.+++.|...+.+.
T Consensus 272 ~l~~l~~~L~~~~~~~~~~~ 291 (321)
T PRK11727 272 NLPPLYRALKKVGAVEVKTI 291 (321)
T ss_pred CHHHHHHHHHHcCCceEEEE
Confidence 78999999999999555433
No 199
>KOG1661|consensus
Probab=98.87 E-value=1.8e-08 Score=74.65 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHh-cCC--eEEEEeCCHHHHHHHHHHHHhcC-----------CCcceEEEccccccCC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAK-HFD--KIDLLEQSSKFIEQAKEEILKDC-----------DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~--~v~~vD~s~~~~~~a~~~~~~~~-----------~~i~~~~~~d~~~~~~ 144 (256)
..++.+.||+|+|+|+++..++.. +.. .++|+|.-++.++.+++++...- ..+ .++.+|......
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l-~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL-SIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce-EEEeCCccccCC
Confidence 488999999999999999887633 332 45999999999999999886432 245 678888888777
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.. +||.|++..... ...+++...|++||.+++-
T Consensus 159 e~a--~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQA--PYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccC--CcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 666 899999985433 4556778899999999984
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.86 E-value=4.7e-08 Score=72.99 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=93.0
Q ss_pred HHHHHHHhccCCCCCCC-eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKT-RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~ 143 (256)
++++.+. -........ +++|||+|.|.-+..++-..+. +++.+|.+..-+...+......+ .++ .+++..+++ .
T Consensus 34 Hi~DSL~-~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv-~v~~~R~E~-~ 110 (184)
T PF02527_consen 34 HILDSLA-LLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNV-EVINGRAEE-P 110 (184)
T ss_dssp HHHHHHG-GGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSE-EEEES-HHH-T
T ss_pred HHHHHHH-hhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCE-EEEEeeecc-c
Confidence 4555554 222223333 8999999999999988766654 89999999988887777777666 356 889999988 2
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
... .+||+|++..+ ..+..+++-+...+++||.+++.-.. .+.-..++....+...|.+
T Consensus 111 ~~~--~~fd~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~~KG~-------------~~~~El~~~~~~~~~~~~~ 169 (184)
T PF02527_consen 111 EYR--ESFDVVTARAV------APLDKLLELARPLLKPGGRLLAYKGP-------------DAEEELEEAKKAWKKLGLK 169 (184)
T ss_dssp TTT--T-EEEEEEESS------SSHHHHHHHHGGGEEEEEEEEEEESS---------------HHHHHTHHHHHHCCCEE
T ss_pred ccC--CCccEEEeehh------cCHHHHHHHHHHhcCCCCEEEEEcCC-------------ChHHHHHHHHhHHHHhCCE
Confidence 223 37999999877 34457889999999999999985211 1111123445566666766
Q ss_pred EEEee
Q psy8370 224 CVKSE 228 (256)
Q Consensus 224 ~~~~~ 228 (256)
...+.
T Consensus 170 ~~~v~ 174 (184)
T PF02527_consen 170 VLSVP 174 (184)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 66554
No 201
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.86 E-value=2.9e-07 Score=74.66 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcC-CCc-ceEEEccccccC---CC-CCC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDC-DKL-DKCYNVGIQDFK---PE-DLN 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~-~~i-~~~~~~d~~~~~---~~-~~~ 148 (256)
.++..++|+|||+|.-+..|+... ...++++|+|.++++.+..++.... ..+ ..-+++|+.+.. +. ...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 566789999999998766655432 2279999999999999999887222 233 034677775541 11 111
Q ss_pred CceeEEEec-hhhhccCHHHHHHHHHHHhh-hcCCCcEEEEE
Q psy8370 149 IKYDVIWIQ-WVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~-~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~i~ 188 (256)
....+++.. .++.++++++...+|+++++ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 235666654 58999999899999999999 99999999996
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.85 E-value=2.2e-08 Score=79.56 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
+..+ ++||-||.|.|..++.+++.. ..+++.||+++..++.+++.+.... .++ .++..|..++..... ..|
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv-~i~i~Dg~~~v~~~~-~~f 150 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRV-EIIIDDGVEFLRDCE-EKF 150 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCce-EEEeccHHHHHHhCC-CcC
Confidence 3444 699999999999999998776 4599999999999999999987433 566 888889887765433 279
Q ss_pred eEEEechhhhccCH-H--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILD-E--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|++...=. ..+ + --..+++.+++.|+++|+++..
T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9999875433 111 0 1246999999999999999984
No 203
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.85 E-value=2.1e-08 Score=75.75 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.++.+|+|+.||-|.++..++.. ....|+++|++|.+++..+++.+..+ ..+ ....+|..++.+ .. .+|-|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i-~~~~~D~~~~~~-~~--~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI-EVINGDAREFLP-EG--KFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE-EEEES-GGG----TT---EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE-EEEcCCHHHhcC-cc--ccCEEEE
Confidence 67899999999999999999873 33489999999999999999988665 345 788999998877 34 7999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
..--.. ..++..+.+.+++||.+-
T Consensus 176 ~lp~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 NLPESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TSSG------GGGHHHHHHHEEEEEEEE
T ss_pred CChHHH------HHHHHHHHHHhcCCcEEE
Confidence 743222 247777888999988763
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=98.83 E-value=6.2e-08 Score=76.14 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----CCcceEEEccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
-+.+++||=||.|.|..++++++.. .+|+.||+++.+++.+++.+.... .++ +++.. + .... .++||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv-~l~~~-~---~~~~-~~~fDV 142 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNF-THAKQ-L---LDLD-IKKYDL 142 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCE-EEeeh-h---hhcc-CCcCCE
Confidence 3567999999999999999998765 499999999999999999665321 344 44431 1 1111 137999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++... .+ ..+.+.+++.|+|||.++..
T Consensus 143 IIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 143 IICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 998753 11 35778999999999999984
No 205
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=5.2e-08 Score=71.54 Aligned_cols=116 Identities=10% Similarity=0.127 Sum_probs=87.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
-..+.+++..+.....+++|||+|+|+|..+...+..|...|+..|+.+-.....+-+...++..+ .+...|... .
T Consensus 64 G~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i-~~~~~d~~g-~-- 139 (218)
T COG3897 64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSI-LFTHADLIG-S-- 139 (218)
T ss_pred hHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcccee-EEeeccccC-C--
Confidence 355677776777888899999999999999999988998899999999998888888877777666 777777765 2
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
. +.+|+++...++..- ....++++...++...|-.+++.+
T Consensus 140 ~--~~~Dl~LagDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgd 179 (218)
T COG3897 140 P--PAFDLLLAGDLFYNH--TEADRLIPWKDRLAEAGAAVLVGD 179 (218)
T ss_pred C--cceeEEEeeceecCc--hHHHHHHHHHHHHHhCCCEEEEeC
Confidence 2 269999999988766 344567774444444444455443
No 206
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.78 E-value=5.6e-08 Score=80.48 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=93.9
Q ss_pred ccccchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEE
Q psy8370 57 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCY 135 (256)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~ 135 (256)
+...+......++.... ...+..++ +|||+-||.|.++..++... .+|+|||+++.+++.|+++....+ .++ +++
T Consensus 174 FfQvN~~~~~~l~~~~~-~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~-~f~ 249 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQAL-EWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNV-EFI 249 (352)
T ss_dssp ---SBHHHHHHHHHHHH-HHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SE-EEE
T ss_pred CccCcHHHHHHHHHHHH-HHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcc-eEE
Confidence 33444444555566555 44455544 89999999999999996544 599999999999999999998776 456 888
Q ss_pred EccccccCCC--------------CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 136 NVGIQDFKPE--------------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 136 ~~d~~~~~~~--------------~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
..+..+.... .....+|+|+..=-=.-+. ..+++.+.+ +.-+++++.+....
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~tl------- 315 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPATL------- 315 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HHHH-------
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHHHH-------
Confidence 7776544210 0012578887751100010 123333332 34577776433222
Q ss_pred CCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCcceeeeEEEecc
Q psy8370 202 EDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (256)
..++. .|. .||++........+|.+.+-..+..|+.
T Consensus 316 --------aRDl~-~L~-~~y~~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 316 --------ARDLK-ILK-EGYKLEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp --------HHHHH-HHH-CCEEEEEEEEE-SSTTSS--EEEEEEEE
T ss_pred --------HHHHH-HHh-hcCEEEEEEEeecCCCCCcEEEEEEEEe
Confidence 13343 344 4999999988888888777766666543
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.77 E-value=5.7e-08 Score=81.01 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=76.5
Q ss_pred CCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.++++.+..+. ++ .+...|+..+..... .||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~-~v~~~Da~~~l~~~~--~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE-KVFNKDANALLHEER--KFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce-EEEhhhHHHHHhhcC--CCCEEEECCC
Confidence 468999999999999998765 445899999999999999999876653 34 688899877543223 6999998631
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. ...++..+.+.+++||.++++
T Consensus 135 --Gs----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GS----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CC----cHHHHHHHHHHhcCCCEEEEE
Confidence 12 135777777788999999998
No 208
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.4e-07 Score=69.05 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=97.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++..+||||+.||.++..++++|++.|+++|..-.-+.. .++.. .++..+...+++.+.+..-.+..|++++..
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRND-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcC-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 46788999999999999999999999999999998643322 12221 355345566776665543334689999987
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCce------eeCHHHHHHHHHhcCCcEEEeeeecC
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV------VRSLPQFCLLFSKANLKCVKSEKVTG 232 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gf~~~~~~~~~~ 232 (256)
++-.+ ..+|..+..+++|++.++.---.........-...+.. ..-...+.+.+.+.||.+........
T Consensus 153 SFISL-----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi 227 (245)
T COG1189 153 SFISL-----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPI 227 (245)
T ss_pred ehhhH-----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCc
Confidence 77655 47899999999999877764221111111011111111 12446777888889999988775544
Q ss_pred C
Q psy8370 233 M 233 (256)
Q Consensus 233 ~ 233 (256)
.
T Consensus 228 ~ 228 (245)
T COG1189 228 K 228 (245)
T ss_pred c
Confidence 4
No 209
>KOG3201|consensus
Probab=98.75 E-value=2.7e-08 Score=70.60 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=99.7
Q ss_pred cchhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC-CCcceE--
Q psy8370 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKC-- 134 (256)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~-- 134 (256)
.-+++..+.+..+..+......+.+|||+|.|.-.++-.+.+... ..|..+|-++..++..++...... ...+..
T Consensus 8 vciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~v 87 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCV 87 (201)
T ss_pred EEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehh
Confidence 344455666777765666667789999999996665555444332 389999999999998888765431 111111
Q ss_pred EEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHH
Q psy8370 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 214 (256)
Q Consensus 135 ~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
...+...-........||+|++.+.+-+- +-...+++.+++.|+|.|.-++..+ ....+.+.+.
T Consensus 88 lrw~~~~aqsq~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsP--------------RRg~sL~kF~ 151 (201)
T KOG3201|consen 88 LRWLIWGAQSQQEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSP--------------RRGQSLQKFL 151 (201)
T ss_pred hHHHHhhhHHHHhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecC--------------cccchHHHHH
Confidence 11111111111112379999999876554 4556799999999999998777421 1224678888
Q ss_pred HHHHhcCCcEEEee
Q psy8370 215 LLFSKANLKCVKSE 228 (256)
Q Consensus 215 ~~l~~~gf~~~~~~ 228 (256)
+.....||.+...+
T Consensus 152 de~~~~gf~v~l~e 165 (201)
T KOG3201|consen 152 DEVGTVGFTVCLEE 165 (201)
T ss_pred HHHHhceeEEEecc
Confidence 88889999876544
No 210
>KOG2798|consensus
Probab=98.73 E-value=2.9e-07 Score=72.43 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcC------------------CCc------
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL---KDC------------------DKL------ 131 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~------------------~~i------ 131 (256)
...+.+||--|||.|+++..++..|+ .+-|-|.|--|+-...-.++ ..+ +++
T Consensus 148 ~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 148 ERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 34467899999999999999999998 78888888776543322210 000 000
Q ss_pred -----------c--eEEEccccccCCC-CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc
Q psy8370 132 -----------D--KCYNVGIQDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197 (256)
Q Consensus 132 -----------~--~~~~~d~~~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 197 (256)
. ..-.+|+.+.-.. .+.+.||+|+.++.+..- ......++.+..+|||||+.+=..+..-.-..
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFED 304 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence 0 1122444333221 113579999988766555 56678999999999999998865332222111
Q ss_pred ccc-CCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 198 EYD-DEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 198 ~~~-~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
... ....++..+.+++..+....||+++..+
T Consensus 305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 305 THGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 010 1233667899999999999999998766
No 211
>KOG0820|consensus
Probab=98.72 E-value=1e-07 Score=73.53 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=69.7
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~ 145 (256)
.+..++ ......++..|||+|.|||.++..+++.+. +|+++|+++.|+....+++.... ..+ ++..+|+...+.+
T Consensus 46 v~~~I~-~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kL-qV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIV-EKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKL-QVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHH-hccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcccee-eEEecccccCCCc
Confidence 455555 566788999999999999999999999887 89999999999999999998655 467 8899998776532
Q ss_pred CCCCceeEEEec
Q psy8370 146 DLNIKYDVIWIQ 157 (256)
Q Consensus 146 ~~~~~~D~V~~~ 157 (256)
.||.++++
T Consensus 123 ----~fd~cVsN 130 (315)
T KOG0820|consen 123 ----RFDGCVSN 130 (315)
T ss_pred ----ccceeecc
Confidence 68999985
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.71 E-value=2e-07 Score=70.86 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=67.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHH-------hcC---CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEIL-------KDC---DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~---~~i~~~~ 135 (256)
..+..++ +..+..++...+|||||.|......+.. ++.+.+|+|+.+...+.|+...+ ..+ .++ .+.
T Consensus 29 ~~~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v-~l~ 106 (205)
T PF08123_consen 29 EFVSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV-ELI 106 (205)
T ss_dssp HHHHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE-EEE
T ss_pred HHHHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc-eee
Confidence 3455555 4456788899999999999988776543 56579999999998877765432 122 244 566
Q ss_pred EccccccCCCCC-CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 136 NVGIQDFKPEDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 136 ~~d~~~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+.+...... -...|+|+++...- + +++...|.+....||+|..++..
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 777765432110 01479999987632 2 44556667777889998887754
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=8e-07 Score=67.60 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
+.+++|||+|.|.-+..++-..+. +++.+|....=+...+......+. ++ .++++-+++...... .||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv-~i~~~RaE~~~~~~~--~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENV-EIVHGRAEEFGQEKK--QYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCe-EEehhhHhhcccccc--cCcEEEeehc
Confidence 689999999999999887633332 799999998877777777666663 47 889999988865433 2999999877
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCCCCc
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKS 236 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 236 (256)
..+..+++-+...+++||.++..-..... --..+........|+.+..... ...|..
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~~~k~~~~~-------------~e~~e~~~a~~~~~~~~~~~~~-~~~p~~ 201 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFLAYKGLAGK-------------DELPEAEKAILPLGGQVEKVFS-LTVPEL 201 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcchhhhHHhhh-------------hhHHHHHHHHHhhcCcEEEEEE-eecCCC
Confidence 44557888899999999987653111111 1135566777778888876553 334443
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-07 Score=73.85 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=67.8
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.+.+.+ ......++.+|||||+|.|.++..|++++. +|+++|+++.+++..++.+... .++ .++.+|+.......-
T Consensus 18 v~~kIv-~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~-~n~-~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIV-EAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY-DNL-TVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHH-HhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc-cce-EEEeCchhcCcchhh
Confidence 355555 555667789999999999999999998887 7999999999999999987633 467 899999988876531
Q ss_pred CCceeEEEec
Q psy8370 148 NIKYDVIWIQ 157 (256)
Q Consensus 148 ~~~~D~V~~~ 157 (256)
..++.|+++
T Consensus 94 -~~~~~vVaN 102 (259)
T COG0030 94 -AQPYKVVAN 102 (259)
T ss_pred -cCCCEEEEc
Confidence 035777765
No 215
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=6.8e-07 Score=65.61 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHH----------HHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSK----------FIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~----------~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
....++.+|+|+-.|.|++++.++.. +.. .|+++-+.+. +-..+++... .+. +.+..+...+.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~-e~~~~~~~A~~~ 119 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANV-EVIGKPLVALGA 119 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh---hhh-hhhCCcccccCC
Confidence 35788999999999999999988654 222 6666544432 1111111111 122 334444433332
Q ss_pred CCCCCceeEEEechhhh-----ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 145 EDLNIKYDVIWIQWVLM-----FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
.+ ..|+++.....| .+......+....+++.|||||.+++.++....+.. ........+.+...+.+..+.
T Consensus 120 pq---~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 120 PQ---KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred CC---cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhhhhhcccChHHHHHHHHh
Confidence 22 366666543222 223456678999999999999999999877666544 333333445688889999999
Q ss_pred cCCcEEEeeeecCCCCcceeeeEEE
Q psy8370 220 ANLKCVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 220 ~gf~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
+||.+........+|.+.+.+|++-
T Consensus 196 aGFkl~aeS~ilaNp~D~~~i~v~d 220 (238)
T COG4798 196 AGFKLEAESEILANPDDPRGIWVFD 220 (238)
T ss_pred hcceeeeeehhhcCCCCCCceeecC
Confidence 9999998888888888888888765
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.69 E-value=1.6e-07 Score=81.38 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.....+||||||.|.++..++...+. .++|+|+....+..+..+....+ .++ .++..|+..+...-..+++|-|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~-~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF-LLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE-EEEcCCHHHHHHhcCcccccEEEEE
Confidence 45678999999999999999888765 89999999998888877766655 355 6777776543321112379999987
Q ss_pred hhhhc------cCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMF------ILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~------~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+-=-| -..=--..+++.+++.|+|||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 54221 11111246899999999999999985
No 217
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.66 E-value=3e-08 Score=83.06 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCcceEEEc--cccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLL---EQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~i~~~~~~--d~~~~~~~~~~~~~D~V~ 155 (256)
.-..+||+|||+|.++..|+.++. .+..+ |..+..++.|.++ .+ ....+ .-..++.+.. .||+|.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR------Gv-pa~~~~~~s~rLPfp~~--~fDmvH 186 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER------GV-PAMIGVLGSQRLPFPSN--AFDMVH 186 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc------Cc-chhhhhhccccccCCcc--chhhhh
Confidence 345689999999999999988876 33333 3333444444443 12 22222 2356666666 899999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|...+..+...+ ..+|-++-|+|+|||+++++.+
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 998876664432 4688999999999999999743
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.63 E-value=5e-07 Score=66.79 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
-.+.++||+-+|+|.++.+.+.+|+..++.||.+..+....+++....+ .+. .++..|......... .++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~-~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA-RVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce-EEEeecHHHHHHhcCCCCcccEEEe
Confidence 5789999999999999999999999999999999999999999998766 566 778888775533222 124999998
Q ss_pred chhhh-ccCHHHHHHHHHH--HhhhcCCCcEEEEEe
Q psy8370 157 QWVLM-FILDEDIIKFLNL--CKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~-~~~~~~~~~~l~~--~~~~LkpgG~l~i~~ 189 (256)
.=-++ .+ -+....+.. -...|+|+|.+++..
T Consensus 121 DPPy~~~l--~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYAKGL--LDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCccch--hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 73333 11 111222222 456799999999863
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.62 E-value=1.3e-07 Score=73.91 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=95.4
Q ss_pred hhhhHHHHHHHHhccCCCCCCCeEEEEcCCC--CHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc
Q psy8370 62 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI--GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137 (256)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~ 137 (256)
.+..+.|+.+.+........-...||||||- ......+++...+ +|+-||.++-.+..++..+.......+.++.+
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 3445677777662222333667899999993 3456666655432 99999999999999999887654212278999
Q ss_pred cccccCCCCC----CCcee-----EEEechhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-------cc-
Q psy8370 138 GIQDFKPEDL----NIKYD-----VIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY- 199 (256)
Q Consensus 138 d~~~~~~~~~----~~~~D-----~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~- 199 (256)
|+.+....-. .+-+| .|++..++|++++ ++...++..++..|.||..|.++......... .+
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9877532100 11233 6778889999977 67889999999999999999998765543211 11
Q ss_pred cCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 200 DDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 200 ~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
........++.+++..+|. ||++++
T Consensus 209 ~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 209 QAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred cCCCCceecCHHHHHHHcC--CCccCC
Confidence 1123345579999999985 888875
No 220
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.55 E-value=2.1e-07 Score=74.52 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=67.1
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~ 146 (256)
+.+++ ....+.++..++|.+||.|..+..++.... .+|+|+|.++.+++.+++++.. ..++ .+++.++.++....
T Consensus 8 l~Evl-~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri-~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVV-DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRF-TLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHH-HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcE-EEEeCCHHHHHHHH
Confidence 44444 333456778999999999999999988753 4899999999999999998765 4567 89999988764322
Q ss_pred C--CCceeEEEechh
Q psy8370 147 L--NIKYDVIWIQWV 159 (256)
Q Consensus 147 ~--~~~~D~V~~~~~ 159 (256)
. ..++|.|++...
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 1 126999998743
No 221
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=6.8e-06 Score=61.91 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=103.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK 143 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~ 143 (256)
..+..++ ..+.++.||||-.|++..++...+.. .+++.|+++..++.|.+++...+ .++ ....+|-....
T Consensus 8 ~~va~~V------~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i-~vr~~dgl~~l 80 (226)
T COG2384 8 TTVANLV------KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERI-DVRLGDGLAVL 80 (226)
T ss_pred HHHHHHH------HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceE-EEeccCCcccc
Confidence 4455566 45566999999999999999888754 89999999999999999998765 345 66677764433
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCc
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 223 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~ 223 (256)
...+ .+|+|+...+-..+ +..++++-...|+.=-.+++..+ ....++++.+..++|.
T Consensus 81 ~~~d--~~d~ivIAGMGG~l----I~~ILee~~~~l~~~~rlILQPn-----------------~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 81 ELED--EIDVIVIAGMGGTL----IREILEEGKEKLKGVERLILQPN-----------------IHTYELREWLSANSYE 137 (226)
T ss_pred CccC--CcCEEEEeCCcHHH----HHHHHHHhhhhhcCcceEEECCC-----------------CCHHHHHHHHHhCCce
Confidence 3333 69999887664433 45677777777764445665311 1246789999999999
Q ss_pred EEEeeeecCCCCcceeeeEEE
Q psy8370 224 CVKSEKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (256)
+..... ..-....|++.+.+
T Consensus 138 I~~E~i-leE~~kiYEIlv~e 157 (226)
T COG2384 138 IKAETI-LEEDGKIYEILVVE 157 (226)
T ss_pred eeeeee-ecccCeEEEEEEEe
Confidence 987543 22234566666555
No 222
>KOG1663|consensus
Probab=98.55 E-value=1.3e-06 Score=66.18 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQD 141 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~ 141 (256)
.+|+.-++ ....++++||||.=||..+..++...++ +|+++|+++...+.+.+..+..+ .++ .++.+...+
T Consensus 62 g~fl~~li----~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI-~~i~g~a~e 136 (237)
T KOG1663|consen 62 GQFLQMLI----RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKI-TFIEGPALE 136 (237)
T ss_pred HHHHHHHH----HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccccee-eeeecchhh
Confidence 35666666 4457899999999999998888776544 99999999999999988877665 345 777776543
Q ss_pred cC----CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 142 FK----PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 142 ~~----~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.. ...+.+.||+++..+--. ......+++.+++++||++++-.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~-----nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKD-----NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchH-----HHHHHHHHHHhhcccccEEEEec
Confidence 32 222245899999864322 22368889999999999998754
No 223
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.53 E-value=1.6e-06 Score=74.09 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
...++.+|||++||.|.=+.++++... ..++++|+++.-++..++++...+. ++ .+...|...+..... +.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv-~v~~~D~~~~~~~~~-~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNV-ALTHFDGRVFGAALP-ETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeCchhhhhhhch-hhcCeE
Confidence 456889999999999999988877642 2899999999999999999998773 44 677778776542211 369999
Q ss_pred Eech------hhhc-------cCHHH-------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQW------VLMF-------ILDED-------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~------~l~~-------~~~~~-------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+... ++.. ++.++ -.++|..+.+.|||||.++-+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9431 2221 11111 256899999999999999875
No 224
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.51 E-value=5.3e-06 Score=62.80 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=90.2
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcC-C-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeE
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~ 153 (256)
..+.++.+||-+|+.+|....+++.--. . .|++||.|+......-...+.. .++ -.+.+|+........ .+.+|+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NI-iPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNI-IPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTE-EEEES-TTSGGGGTTTS--EEE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cce-eeeeccCCChHHhhcccccccE
Confidence 4678899999999999999999865422 2 8999999997665555443333 467 677788875542211 237999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeeeecCC
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVTGM 233 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 233 (256)
|++.-. .+++..-++.++...||+||.++++-........ ... .-.-++-.+.|++.||++.+...-..+
T Consensus 147 I~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t-----~~p-~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 147 IFQDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDST-----ADP-EEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp EEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS-----SSH-HHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred EEecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCc-----CCH-HHHHHHHHHHHHHcCCChheEeccCCC
Confidence 999754 2255667888999999999999986322111110 000 000122345677789999876654444
Q ss_pred CCcc
Q psy8370 234 PKSL 237 (256)
Q Consensus 234 ~~~~ 237 (256)
..++
T Consensus 217 ~~dH 220 (229)
T PF01269_consen 217 ERDH 220 (229)
T ss_dssp STTE
T ss_pred CCCc
Confidence 4443
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.51 E-value=6.8e-07 Score=74.24 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
+.+|||+.||+|..+..++.+ +..+|+++|+++.+++.++++.+..+. ++ .+.+.|+..+..... ..||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~-~v~~~Da~~~l~~~~-~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENI-EVPNEDAANVLRYRN-RKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEchhHHHHHHHhC-CCCCEEEeCC
Confidence 468999999999999999887 567999999999999999999986652 35 788888877654322 3699998864
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+ ..+ ..++..+.+.+++||.+.++
T Consensus 123 -f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 2 221 35888889999999999997
No 226
>KOG1269|consensus
Probab=98.50 E-value=3e-07 Score=75.71 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..+...++|+|||.|.............++|++.++.-+.++........ ... .+...|+.+.++++. .||.+.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~-~~~~~~~~~~~fedn--~fd~v~~ 184 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKC-NFVVADFGKMPFEDN--TFDGVRF 184 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhc-ceehhhhhcCCCCcc--ccCcEEE
Confidence 45566899999999999999877776699999999887776666554332 233 567778888888777 8999999
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc--------CCCC----ceeeCHHHHHHHHHhcCCcE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--------DEDS----SVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~l~~~gf~~ 224 (256)
..+..|.+ +....+++++++++|||.++..+........... .... .......+...++...||..
T Consensus 185 ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~ 262 (364)
T KOG1269|consen 185 LEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEH 262 (364)
T ss_pred EeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchh
Confidence 99999995 5568999999999999999997654433322111 0000 01124455667777788877
Q ss_pred EEeeee
Q psy8370 225 VKSEKV 230 (256)
Q Consensus 225 ~~~~~~ 230 (256)
...+..
T Consensus 263 ~~~~~d 268 (364)
T KOG1269|consen 263 LKLEKD 268 (364)
T ss_pred hhhccc
Confidence 764433
No 227
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.5e-05 Score=59.10 Aligned_cols=148 Identities=13% Similarity=0.029 Sum_probs=96.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeE
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDV 153 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~ 153 (256)
..++.++.+||=+|+.+|....+++.--. ..+++||.|+.+....-...... .++ -.+..|+........ .+..|+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni-~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNI-IPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCc-eeeecccCCcHHhhhhcccccE
Confidence 34678899999999999999999865432 37999999988766555554443 366 677778765432111 236899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHH----HHHHHhcCCcEEEeee
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQF----CLLFSKANLKCVKSEK 229 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~gf~~~~~~~ 229 (256)
|+..-+ .+++..-+..++...||+||.++++--..+-.. ..+++++ ..-+++.||++.+...
T Consensus 149 iy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv----------T~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 149 IYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDV----------TADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred EEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccc----------cCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 988643 225566788899999999997777522221111 1122222 2456778999987765
Q ss_pred ecCCCCccee
Q psy8370 230 VTGMPKSLFK 239 (256)
Q Consensus 230 ~~~~~~~~~~ 239 (256)
-..+..+++-
T Consensus 215 LePye~DH~~ 224 (231)
T COG1889 215 LEPYEKDHAL 224 (231)
T ss_pred cCCcccceEE
Confidence 4545444443
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.49 E-value=5e-07 Score=67.90 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC--------CCCCCc
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--------EDLNIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~--------~~~~~~ 150 (256)
++.+|||+||++|.++..++.++ ...|+|+|+.+. ... ..+ ..+.+|+.+... ......
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~-~~~-~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL-QNV-SFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--TTE-EBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc-cce-eeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999998887 349999999876 000 122 344444432211 110147
Q ss_pred eeEEEechhhhcc---------CHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 151 YDVIWIQWVLMFI---------LDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 151 ~D~V~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+|++..+.... ...-....+.-+.+.|+|||.+++-
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 9999998721111 0033444556667889999998885
No 229
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.42 E-value=7.8e-07 Score=64.70 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCc-eeEEEec--
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIK-YDVIWIQ-- 157 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~-~D~V~~~-- 157 (256)
..|+|+.||.|..+..++... +.|+++|+++..++.++.+.+-.+ .++ .++++|+.+......... +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I-~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNI-DFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGE-EEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEeCCHHHHHhhccccccccEEEECCC
Confidence 369999999999999997664 599999999999999999998775 467 999999988754322112 7999976
Q ss_pred -----------hhh-hccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 158 -----------WVL-MFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 158 -----------~~l-~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+-+ ..+.+-...++++.+.++ .++=.+++
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~nv~l~L 119 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPNVVLFL 119 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S-EEEEE
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhh-CCCEEEEe
Confidence 112 333333456677665554 44544444
No 230
>KOG1709|consensus
Probab=98.42 E-value=3.5e-06 Score=62.96 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
.++.+||++|-|.|...-.+.+..+.+-+.+|..+..++..+..--....++ .+..+-+++..+.-.++.||-|+-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nV-iil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENV-IILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccce-EEEecchHhhhccccccCcceeEeech
Confidence 7899999999999999999877777688889999998888777654444566 667777766654333357999998755
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-.+. +++..+.+.+.++|||+|++-...
T Consensus 179 ~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 4544 677788899999999999998753
No 231
>KOG2352|consensus
Probab=98.42 E-value=2.2e-06 Score=71.78 Aligned_cols=108 Identities=17% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCC-eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKT-RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.. +++-+|||.-.+...+...|+..|+.+|+|+..++....+......-. .+...|+....++++ +||+|+.-.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~-~~~~~d~~~l~fedE--SFdiVIdkG 122 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEM-QMVEMDMDQLVFEDE--SFDIVIDKG 122 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcce-EEEEecchhccCCCc--ceeEEEecC
Confidence 3444 999999999999999988999999999999999888877664333345 788999999988877 999999887
Q ss_pred hhhccCH--------HHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 159 VLMFILD--------EDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 159 ~l~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.++++-. ......+.++++++++||+++....
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 7776622 1234578899999999999887654
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.40 E-value=5.9e-07 Score=65.56 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
....+.|+|+|+|.++...+. .+++|++++.+|.-...|.+++.-.+ .++ +++.+|+.+..++ ..|+|+|-..
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~~n~-evv~gDA~~y~fe----~ADvvicEml 105 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGDVNW-EVVVGDARDYDFE----NADVVICEML 105 (252)
T ss_pred hhhceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCCcce-EEEeccccccccc----ccceeHHHHh
Confidence 348899999999999987644 46799999999999999999875444 466 8999999988773 4699998754
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
=..+-.+.....+..+...|+.++.++=.
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 33333344566788888889988887753
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.37 E-value=7.9e-06 Score=65.94 Aligned_cols=131 Identities=16% Similarity=0.222 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHH--HHhcC------CCcceEEEccccccCCCCCCCc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE--ILKDC------DKLDKCYNVGIQDFKPEDLNIK 150 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~--~~~~~------~~i~~~~~~d~~~~~~~~~~~~ 150 (256)
+...+||-+|.|.|.-++++.+.. ..+++-||.+|.|++.++.. ++..+ .++ .++..|+.+|..... ..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv-~Vv~dDAf~wlr~a~-~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRV-TVVNDDAFQWLRTAA-DM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCee-EEEeccHHHHHHhhc-cc
Confidence 456789999999999999987653 56999999999999999943 33221 467 888899988876544 47
Q ss_pred eeEEEech------hhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcE
Q psy8370 151 YDVIWIQW------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 151 ~D~V~~~~------~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
||+|+... ++..+.. ..+..-+.+.|+++|.+++...... ......| .+.+-++++||.+
T Consensus 366 fD~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~VvQags~y------~tp~vfw-----~i~aTik~AG~~~ 431 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMVVQAGSPY------FTPRVFW-----RIDATIKSAGYRV 431 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEEEecCCCc------cCCceee-----eehhHHHhCccee
Confidence 99999652 2222211 2466778899999999998532111 1111222 1345678899876
Q ss_pred EE
Q psy8370 225 VK 226 (256)
Q Consensus 225 ~~ 226 (256)
.-
T Consensus 432 ~P 433 (508)
T COG4262 432 WP 433 (508)
T ss_pred ee
Confidence 53
No 234
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.36 E-value=6.8e-06 Score=59.07 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=66.4
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHHHhcC----CCcceEE
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-----KHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCY 135 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~i~~~~ 135 (256)
..+++..+........+..+|+|+|||.|+++..++. ...-+|+++|.++..++.+..+.+... .++ .+.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 87 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRL-SFI 87 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccc-hhh
Confidence 3345555542112346788999999999999999987 322399999999999999988877544 223 445
Q ss_pred EccccccCCCCCCCceeEEEechhhhccCH
Q psy8370 136 NVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165 (256)
Q Consensus 136 ~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~ 165 (256)
..+..+... . ...++++.-+....+.+
T Consensus 88 ~~~~~~~~~-~--~~~~~~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 88 QGDIADESS-S--DPPDILVGLHACGDLSD 114 (141)
T ss_pred ccchhhhcc-c--CCCeEEEEeecccchHH
Confidence 555443322 2 25788888888777743
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.3e-05 Score=58.93 Aligned_cols=141 Identities=17% Similarity=0.046 Sum_probs=90.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC------CCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------LNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------~~~ 149 (256)
-..++.+|+|||+-.|.++..+++.... .|+++|+.|- ... ..+ .++++|+.+..... +..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~-~~V-~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI-PGV-IFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC-CCc-eEEeeeccCccHHHHHHHHcCCC
Confidence 3577899999999999999998777543 4999999873 111 246 78888887654321 123
Q ss_pred ceeEEEechhh--------hccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhc
Q psy8370 150 KYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 220 (256)
Q Consensus 150 ~~D~V~~~~~l--------~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (256)
.+|+|++...- +|... .-....++-+..+|+|||.+++-.... ...+++...++.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg---------------~~~~~~l~~~~~- 174 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG---------------EDFEDLLKALRR- 174 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC---------------CCHHHHHHHHHH-
Confidence 47999976432 33322 223446667788999999999853222 123556666654
Q ss_pred CCcEEEeeeecCCCCcceeeeEEEe
Q psy8370 221 NLKCVKSEKVTGMPKSLFKIYMFAL 245 (256)
Q Consensus 221 gf~~~~~~~~~~~~~~~~~~~~~~l 245 (256)
.|+.+........-...-.+++.+.
T Consensus 175 ~F~~v~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 175 LFRKVKIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred hhceeEEecCccccCCCceEEEEEe
Confidence 5777776654444334445555553
No 236
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.35 E-value=1.4e-05 Score=58.87 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=70.3
Q ss_pred EEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEccccc--cCCCCCCCceeEEEechh
Q psy8370 85 VLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQD--FKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~d~~~--~~~~~~~~~~D~V~~~~~ 159 (256)
++|+|||+|... .+..... ..++++|+++.++..++......... + .+...+... .+.... ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLV-DFVVADALGGVLPFEDS-ASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCce-EEEEeccccCCCCCCCC-CceeEEeeeee
Confidence 999999999976 3323322 27899999999999855554331111 3 667777665 333331 26999944444
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.++.. ....+.++.+.++|+|.+++.......
T Consensus 129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 55553 568999999999999999997654433
No 237
>KOG2915|consensus
Probab=98.35 E-value=1.6e-05 Score=61.70 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=79.2
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCce
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKY 151 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~ 151 (256)
.+...++.+|||-|+|+|.++..++....+ .++.+|+...-.+.|++.++..+ +++ .+..-|+...-+......+
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~v-t~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNV-TVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcce-EEEEeecccCCcccccccc
Confidence 336899999999999999999999776433 89999999999999999998776 456 8888888766554433578
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
|.|+...- .+ -.++..++.+||.+|.-++
T Consensus 179 DaVFLDlP-----aP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 179 DAVFLDLP-----AP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ceEEEcCC-----Ch--hhhhhhhHHHhhhcCceEE
Confidence 99887632 11 2466677788988875554
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.35 E-value=8.6e-06 Score=73.66 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=76.2
Q ss_pred ccCCC-CCCCeEEEEcCCCCHhHHHHHHhc-------------------------------------------CCeEEEE
Q psy8370 75 QKKSD-PGKTRVLDVGAGIGRISKYLLAKH-------------------------------------------FDKIDLL 110 (256)
Q Consensus 75 ~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-------------------------------------------~~~v~~v 110 (256)
..... .++..++|.+||+|.+.+..+... ...++|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 44444 457899999999999998875421 0158999
Q ss_pred eCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhh-hcc-CHHHHHHHHHHHhhhc---CCCc
Q psy8370 111 EQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL-MFI-LDEDIIKFLNLCKQIL---NKNG 183 (256)
Q Consensus 111 D~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l-~~~-~~~~~~~~l~~~~~~L---kpgG 183 (256)
|+++.+++.|+.+....+ ..+ .+..+|+.++......+++|+|+++-=. ..+ ...+...+.+.+.+.+ .+|+
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i-~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~ 341 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELI-TFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGW 341 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcce-EEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999998776 245 8889999887643322379999998211 112 1133334444443433 4787
Q ss_pred EEEEE
Q psy8370 184 IIIIK 188 (256)
Q Consensus 184 ~l~i~ 188 (256)
.+.+.
T Consensus 342 ~~~ll 346 (702)
T PRK11783 342 NAALF 346 (702)
T ss_pred eEEEE
Confidence 77664
No 239
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.35 E-value=6e-06 Score=67.60 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHhcC--CCcce
Q psy8370 64 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--------HFDKIDLLEQSSKFIEQAKEEILKDC--DKLDK 133 (256)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~ 133 (256)
...+++..++ ...++.+|+|.+||+|.++..+... ...+++|+|+++.+...++-++.-.+ .....
T Consensus 33 ~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 33 EIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred HHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3345555555 5667778999999999998887652 23389999999999999987765443 12114
Q ss_pred EEEccccccCCCCCCCceeEEEech--hhh-c----c-----------CH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQW--VLM-F----I-----------LD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~--~l~-~----~-----------~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+...|....+.......||+|+++- ... + . +. ..-..++..+.+.|++||.+.+.
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 6777765444332123799999872 111 0 0 00 11135889999999999987765
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.34 E-value=4.1e-06 Score=66.71 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-CCceeEEEe
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 156 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-~~~~D~V~~ 156 (256)
...++..|+|||+|+|.++..++..+ .+++++|+++.+.+..++++.. ..++ +++.+|+.++..... ......|++
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-~~~~-~vi~~D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-NPNV-EVINGDFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-CSSE-EEEES-TTTSCGGGHCSSSEEEEEE
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-cccc-eeeecchhccccHHhhcCCceEEEE
Confidence 46688999999999999999998888 6999999999999999988763 2477 899999998876541 013556666
Q ss_pred chhhhccCHHHHHHHHHHHhh
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQ 177 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~ 177 (256)
+--. ++. ..++.++..
T Consensus 104 NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 104 NLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp EETG-TGH----HHHHHHHHH
T ss_pred Eecc-cch----HHHHHHHhh
Confidence 5332 332 245555544
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=1.9e-05 Score=64.81 Aligned_cols=117 Identities=16% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC----------------------------------------eEE
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD----------------------------------------KID 108 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~----------------------------------------~v~ 108 (256)
+...+....+..++..++|--||+|.+++..+..+.. .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 4433336667777889999999999999987765521 277
Q ss_pred EEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech--hhhccCHH----HHHHHHHHHhhhcC
Q psy8370 109 LLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW--VLMFILDE----DIIKFLNLCKQILN 180 (256)
Q Consensus 109 ~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~--~l~~~~~~----~~~~~l~~~~~~Lk 180 (256)
|+|+++.+++.|+.+.+..+ +.| .|.+.|+..+.+... .+|+|+|+- ..---... -...+.+.+.+.++
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I-~f~~~d~~~l~~~~~--~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLI-EFKQADATDLKEPLE--EYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceE-EEEEcchhhCCCCCC--cCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999877 345 999999999987644 799999982 11111111 23345566667777
Q ss_pred CCcEEEEE
Q psy8370 181 KNGIIIIK 188 (256)
Q Consensus 181 pgG~l~i~ 188 (256)
--+.++++
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 77777775
No 242
>KOG1331|consensus
Probab=98.28 E-value=8.6e-07 Score=69.17 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+..++|+|||.|..... .... -++|.|.+...+..++.. ... ....+|+...+.... +||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~~--~p~~-~~ig~D~c~~l~~~ak~~-----~~~-~~~~ad~l~~p~~~~--s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV--NPLC-LIIGCDLCTGLLGGAKRS-----GGD-NVCRADALKLPFREE--SFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCcC--CCcc-eeeecchhhhhccccccC-----CCc-eeehhhhhcCCCCCC--ccccchhhhh
Confidence 4578899999999976553 1222 689999999888777653 111 367789988888777 8999999999
Q ss_pred hhccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+||+.. .....+++++.+.++|||...+.
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999955 56677999999999999997775
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.22 E-value=2.1e-05 Score=63.70 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..++.++|||||++|.++..++++|. +|++||.++ |-.. +... .++ .....|...+.+... .+|.++|..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~~~-~~V-~h~~~d~fr~~p~~~--~vDwvVcDm 278 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LMDT-GQV-EHLRADGFKFRPPRK--NVDWLVCDM 278 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hhCC-CCE-EEEeccCcccCCCCC--CCCEEEEec
Confidence 36789999999999999999999998 999999654 2221 2222 466 666666655554333 799999987
Q ss_pred hh
Q psy8370 159 VL 160 (256)
Q Consensus 159 ~l 160 (256)
+.
T Consensus 279 ve 280 (357)
T PRK11760 279 VE 280 (357)
T ss_pred cc
Confidence 73
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.21 E-value=2.1e-05 Score=62.24 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCCHhHHHHHH-h-cC-CeEEEEeCCHHHHHHHHHHHH---hcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLA-K-HF-DKIDLLEQSSKFIEQAKEEIL---KDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~-~-~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
.+.+|+=||||.=-++..+.. . +. ..++++|+++.+.+.+++... ..+.++ .++.+|..+...... .||+|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m-~f~~~d~~~~~~dl~--~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRM-SFITADVLDVTYDLK--EYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSE-EEEES-GGGG-GG------SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCe-EEEecchhccccccc--cCCEE
Confidence 456999999997766655544 3 22 279999999999999999877 233567 899999887764444 79999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.......- .++..++++++.+.++||..+++.
T Consensus 197 ~lAalVg~~-~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMD-AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccc-cchHHHHHHHHHhhCCCCcEEEEe
Confidence 986544322 235578999999999999999885
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.17 E-value=1.8e-05 Score=69.41 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcC---------CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccC---CCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFK---PEDL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~---------~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~---~~~~ 147 (256)
...+|||.|||+|.+...++.... ..++|+|+++.+++.++.++...+ ..+ .+...|..... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~-~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEI-NVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCc-eeeecccccccccccccc
Confidence 457999999999999988876431 278999999999999998876554 123 34444432211 1111
Q ss_pred CCceeEEEec
Q psy8370 148 NIKYDVIWIQ 157 (256)
Q Consensus 148 ~~~~D~V~~~ 157 (256)
.+.||+|+.+
T Consensus 110 ~~~fD~IIgN 119 (524)
T TIGR02987 110 LDLFDIVITN 119 (524)
T ss_pred cCcccEEEeC
Confidence 2379999987
No 246
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=9.6e-07 Score=62.36 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=58.8
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc------------cccCCCCceeeC
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------EYDDEDSSVVRS 209 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~~~~~~~~~ 209 (256)
..+.+. +.|+|++.++++|++.++-..++++|+++|||||+|-++.+....... +-+...+.+..+
T Consensus 41 ~~F~dn--s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t 118 (185)
T COG4627 41 SMFEDN--SVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKT 118 (185)
T ss_pred ccCCCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHH
Confidence 334444 899999999999999988899999999999999999998543322111 011112233357
Q ss_pred HHHHHHHHHhcCCcEE
Q psy8370 210 LPQFCLLFSKANLKCV 225 (256)
Q Consensus 210 ~~~~~~~l~~~gf~~~ 225 (256)
.+.+...+..+||.+.
T Consensus 119 ~r~m~n~~m~~~~~~k 134 (185)
T COG4627 119 MRMMFNGFMDAGFVVK 134 (185)
T ss_pred HHHHHHHHHhhhheeh
Confidence 7788888888888764
No 247
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=0.00034 Score=58.14 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=96.3
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~ 142 (256)
.++...++ +..++.+|||+.++.|.=+.++++.... .|+++|.++.=++..++++...+.........|....
T Consensus 145 S~l~a~~L----~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 145 SQLPALVL----DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHHHHHHc----CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 34455455 7788999999999999988888776532 5699999999999999999988733225667676544
Q ss_pred CCCCC-CCceeEEEec------hhhh-------ccCHH-------HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccC
Q psy8370 143 KPEDL-NIKYDVIWIQ------WVLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD 201 (256)
Q Consensus 143 ~~~~~-~~~~D~V~~~------~~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 201 (256)
+.... .+.||.|+.. .++. ..+.. -..++|..+.+.|||||.++-++-.....
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e------ 294 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE------ 294 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh------
Confidence 32211 1259999854 2221 11111 13458999999999999999863221111
Q ss_pred CCCceeeCHHHHHHHHHhc-CCcEEEe
Q psy8370 202 EDSSVVRSLPQFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~-gf~~~~~ 227 (256)
-+.+.+..++++. +|+++..
T Consensus 295 ------ENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 295 ------ENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred ------cCHHHHHHHHHhCCCceeecc
Confidence 2345666777765 5655543
No 248
>KOG2187|consensus
Probab=98.09 E-value=1.4e-05 Score=67.46 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~ 145 (256)
+.+-.++.+....+.+..++|+-||||.++..+ +++...|+|+|+++++++.|+.+...++ .+. .|+++-+++..+.
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglal-a~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa-~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLAL-ARGVKRVIGVEISPDAVEDAEKNAQINGISNA-TFIVGQAEDLFPS 446 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhh-hccccceeeeecChhhcchhhhcchhcCccce-eeeecchhhccch
Confidence 334444434457788899999999999999998 5666799999999999999999988776 455 8999966665432
Q ss_pred CCCC---ceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 146 DLNI---KYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 146 ~~~~---~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
.... +=++|...+- +.. --.++++.+++.-++--.++++.+..
T Consensus 447 l~~~~~~~~~~v~iiDP----pR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 447 LLTPCCDSETLVAIIDP----PRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hcccCCCCCceEEEECC----CcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 2111 2242222210 001 11256677776666777777775433
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.05 E-value=4.9e-05 Score=53.70 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=57.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEechhhhccCH---------HHHHHHHHH
Q psy8370 106 KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---------EDIIKFLNL 174 (256)
Q Consensus 106 ~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~---------~~~~~~l~~ 174 (256)
+|+|+|+.+++++..++++...+ .++ .++..+-+.+...-..+++|+++.+ |-++|. +....+++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v-~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRV-TLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGE-EEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcE-EEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999999775 356 7887776666542221379999987 333332 345678999
Q ss_pred HhhhcCCCcEEEEEe
Q psy8370 175 CKQILNKNGIIIIKD 189 (256)
Q Consensus 175 ~~~~LkpgG~l~i~~ 189 (256)
+.+.|+|||.+.++-
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999999974
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.01 E-value=2.7e-05 Score=56.05 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.0
Q ss_pred eEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQD 141 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~ 141 (256)
+++|+|||.|..+..++..+.. +++++|+++.+.+.+++++...+ .++ .++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v-~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNV-VLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcE-EEEEeeeeC
Confidence 4899999999999999887764 79999999999999999987654 235 666655543
No 251
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3.1e-05 Score=62.24 Aligned_cols=128 Identities=16% Similarity=0.060 Sum_probs=73.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~ 144 (256)
..|..+. .......+++|||+|.|.|.-+..+-.-.+ ..++.++.|+..-+......+.....-..+...|+..-..
T Consensus 100 asL~~L~-~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl 178 (484)
T COG5459 100 ASLDELQ-KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRL 178 (484)
T ss_pred HHHHHHH-HhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhcc
Confidence 3344444 223455678899999999987776522222 2788889888766655544333221111333334332211
Q ss_pred CCC-CCceeEEEechhhhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCC
Q psy8370 145 EDL-NIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 195 (256)
Q Consensus 145 ~~~-~~~~D~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 195 (256)
+-. ...|++++..+-+-+. ....+...++.++.++.|||.|++++...+.+
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 111 1246666655433333 22345569999999999999999987554443
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.92 E-value=0.00012 Score=56.62 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...+.+|+|||||.--++........ ..++|.|++..+++.....+...+... .....|...-.+.. ..|+.+..
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~~~~---~~DlaLll 178 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDPPKE---PADLALLL 178 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSHTTS---EESEEEEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccCCCC---CcchhhHH
Confidence 35589999999999998887654433 299999999999999999888776566 67777776554433 58999998
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
=+++-+........+ ++.+.++- =.++++.+..+.... ..+....-...+...+...|+.+.+
T Consensus 179 K~lp~le~q~~g~g~-~ll~~~~~-~~~vVSfPtrSL~gR----~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 179 KTLPCLERQRRGAGL-ELLDALRS-PHVVVSFPTRSLGGR----NKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp T-HHHHHHHSTTHHH-HHHHHSCE-SEEEEEEES-----------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHhcchHH-HHHHHhCC-CeEEEeccccccccC----ccccccCHHHHHHHhcccCCceeee
Confidence 777777322211222 22333332 255555444433321 0111112234555666666766443
No 253
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.84 E-value=0.0014 Score=50.52 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
-.+++||=+|=+.-. +..++. ..+.+|+.+|+++..++..++.....+.++ ..+..|+.+..|..-.++||++++.=
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i-~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI-EAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E-EEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce-EEEEecccccCCHHHhcCCCEEEeCC
Confidence 468899999855433 333333 345599999999999999999998888777 99999999887765446999999872
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCc-EEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNG-IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
. .+.+.+.-++.+....||..| ..+++-.... .+ .....++++.+.+.||.+.+...
T Consensus 121 P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~----------~s-~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 121 P---YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE----------AS-PDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred C---CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc----------Cc-HHHHHHHHHHHHHCCcCHHHHHh
Confidence 2 111455678889999998766 4444311111 00 00123677888899998887654
No 254
>KOG1501|consensus
Probab=97.79 E-value=4.7e-05 Score=62.97 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
....|||||+|||.++...+..|+..|+++|.-..|.+.|++...+.+ ++| .++..--.+...... -..|+++...
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI-~vInkrStev~vg~~-~RadI~v~e~ 143 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKI-NVINKRSTEVKVGGS-SRADIAVRED 143 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccce-eeeccccceeeecCc-chhhhhhHhh
Confidence 345789999999999999988998899999999999999999988776 455 555544443332211 1478877766
Q ss_pred hhhccCHHHHHHHHHHHhhhc
Q psy8370 159 VLMFILDEDIIKFLNLCKQIL 179 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~L 179 (256)
+...+..+.....++++++.|
T Consensus 144 fdtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhhccccchhHHHHHHHh
Confidence 655554343445666666665
No 255
>PRK10742 putative methyltransferase; Provisional
Probab=97.77 E-value=0.0002 Score=55.64 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCCC--eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------C----CCcceEEEccccccCCC
Q psy8370 78 SDPGKT--RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------C----DKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 78 ~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~----~~i~~~~~~d~~~~~~~ 145 (256)
...++. +|||.-+|+|..+..++.+|+ +|+++|-++.+....+..+... + .++ +++..|..++...
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri-~l~~~da~~~L~~ 160 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-QLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceE-EEEeCcHHHHHhh
Confidence 445555 899999999999999999998 5999999999988888877653 1 245 7788888777543
Q ss_pred CCCCceeEEEechhhhc
Q psy8370 146 DLNIKYDVIWIQWVLMF 162 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~ 162 (256)
.. .+||+|+..=++.+
T Consensus 161 ~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 161 IT-PRPQVVYLDPMFPH 176 (250)
T ss_pred CC-CCCcEEEECCCCCC
Confidence 22 37999998755444
No 256
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.75 E-value=0.00048 Score=55.46 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...++.+|||+.++.|.=+.++++... ..++++|+++.-+...+++....+.........|.....+......||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 567889999999999998888877643 399999999999999999998877433256667776663221112599999
Q ss_pred ec------hhhhccCH--------------HHHHHHHHHHhhhc----CCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 156 IQ------WVLMFILD--------------EDIIKFLNLCKQIL----NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 156 ~~------~~l~~~~~--------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
.. .++..-++ ....++|+.+.+.+ +|||.++-+.-..... -+.+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e------------ENE~ 229 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE------------ENEE 229 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG------------GTHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH------------HHHH
Confidence 64 12221111 11346899999999 9999999863221111 1345
Q ss_pred HHHHHHHhc-CCcEEEe
Q psy8370 212 QFCLLFSKA-NLKCVKS 227 (256)
Q Consensus 212 ~~~~~l~~~-gf~~~~~ 227 (256)
.+...++++ .|+++..
T Consensus 230 vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 230 VVEKFLKRHPDFELVPI 246 (283)
T ss_dssp HHHHHHHHSTSEEEECC
T ss_pred HHHHHHHhCCCcEEEec
Confidence 666677776 5655543
No 257
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.71 E-value=0.0015 Score=53.90 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhc---------------CC--eEEEEeCCHHHHHHHHHHHHhc------CCCc-ce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKH---------------FD--KIDLLEQSSKFIEQAKEEILKD------CDKL-DK 133 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~---------------~~--~v~~vD~s~~~~~~a~~~~~~~------~~~i-~~ 133 (256)
.....-+|+|+||.+|..+..+...- .+ +|+.-|.-..--...-+.+... ..++ ..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 45667899999999999887765421 01 6777887654333332222211 1121 13
Q ss_pred EEEccccccCCCCCCCceeEEEechhhhccCH-------------------------------------HHHHHHHHHHh
Q psy8370 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------------EDIIKFLNLCK 176 (256)
Q Consensus 134 ~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~-------------------------------------~~~~~~l~~~~ 176 (256)
-+.+++-+-..+.. +.|++++..++||++. .++..+|+.=+
T Consensus 93 gvpgSFy~rLfP~~--Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 93 GVPGSFYGRLFPSN--SVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp EEES-TTS--S-TT---EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCC--ceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666 8999999999998742 12344555556
Q ss_pred hhcCCCcEEEEEecccCCCCcccc-----------------------------CCCCceeeCHHHHHHHHHhcC-CcEEE
Q psy8370 177 QILNKNGIIIIKDNVASGVKNEYD-----------------------------DEDSSVVRSLPQFCLLFSKAN-LKCVK 226 (256)
Q Consensus 177 ~~LkpgG~l~i~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~g-f~~~~ 226 (256)
+-|+|||.+++.-.........-. ..-..+.++.+|+...+++.| |++..
T Consensus 171 ~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 171 EELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp HHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred heeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 778999999998654444111000 011234468999999988765 66654
Q ss_pred ee
Q psy8370 227 SE 228 (256)
Q Consensus 227 ~~ 228 (256)
.+
T Consensus 251 le 252 (334)
T PF03492_consen 251 LE 252 (334)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 258
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.71 E-value=1.6e-05 Score=54.13 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=41.9
Q ss_pred EEEcCCCCHhHHHHHHhc---C-CeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 86 LDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 86 LDiG~G~G~~~~~l~~~~---~-~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
||||+..|..+..+++.. . .+++++|..+. .+..++.++. ...++ .++.++..+..+....+++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~-~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRV-EFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTE-EEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeE-EEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 689999999888876532 1 26999999995 2223333322 22356 888888765532111138999998753
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-. . +.....++.+.+.|+|||.+++-
T Consensus 79 H~-~--~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HS-Y--EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---H--HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CC-H--HHHHHHHHHHHHHcCCCeEEEEe
Confidence 11 1 34567888999999999999874
No 259
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.66 E-value=0.00027 Score=56.99 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=66.3
Q ss_pred HHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--
Q psy8370 69 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-- 145 (256)
Q Consensus 69 l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~-- 145 (256)
+.+++ ......++..++|--+|.|..+..++... ..+|+|+|.++.+++.+++++.....++ .++++++.++...
T Consensus 9 l~Evl-~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~-~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVV-EGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRV-VLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHH-HhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcE-EEEeCCHHHHHHHHH
Confidence 44444 44456778899999999999999998763 2489999999999999999887665577 8888888765421
Q ss_pred -CCCCceeEEEech
Q psy8370 146 -DLNIKYDVIWIQW 158 (256)
Q Consensus 146 -~~~~~~D~V~~~~ 158 (256)
.+..++|.|+...
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1123688888653
No 260
>PHA01634 hypothetical protein
Probab=97.64 E-value=0.00043 Score=47.50 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
..+++|+|||++-|..+++++-+|++.|+++++++...+..+++.+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 568999999999999999999999999999999999999998877653
No 261
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.63 E-value=0.0031 Score=50.67 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=92.8
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
+++|+-||.|.+...+...|+..+.++|+++.+.+..+.++.. ..+..|+.+.....-.+.+|+++...-+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6899999999999998888887889999999999888877642 2466777776543201369999976322211
Q ss_pred C--------HHHHHHHHH---HHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---
Q psy8370 164 L--------DEDIIKFLN---LCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK--- 229 (256)
Q Consensus 164 ~--------~~~~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~--- 229 (256)
+ .+....++. ++.+.++|. +++.++....... ........+.+.|++.||.+.....
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~-------~~~~~~~~i~~~l~~~GY~~~~~~l~a~ 146 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH-------DNGNTLKVILNTLEELGYNVYWKLLNAS 146 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc-------CchHHHHHHHHHHHhCCcEEEEEEEEHH
Confidence 1 011222333 333444664 5555554433211 0112356788889999998765443
Q ss_pred ecCCCCcceeeeEEEecc
Q psy8370 230 VTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~ 247 (256)
..+.|..--.+++.+.+.
T Consensus 147 ~~GvPQ~R~R~~~ia~~~ 164 (275)
T cd00315 147 DYGVPQNRERVFIIGIRK 164 (275)
T ss_pred HcCCCCCCcEEEEEEEeC
Confidence 245576666666666553
No 262
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.58 E-value=0.00091 Score=53.68 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=50.2
Q ss_pred HHHHHHHhccC-CCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhc-C--CCcceEEEcccc
Q psy8370 67 QFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYNVGIQ 140 (256)
Q Consensus 67 ~~l~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~--~~i~~~~~~d~~ 140 (256)
.++..++.... ..+...++||||+|....--.|..+ ++ +.+|+|+++..++.|++++... . .+| .++...-.
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I-~l~~~~~~ 164 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRI-ELRKQKNP 164 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTE-EEEE--ST
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccce-EEEEcCCc
Confidence 55666662111 1223578999999988654444333 45 9999999999999999999876 3 455 55544221
Q ss_pred -cc---CCCCCCCceeEEEechhhhcc
Q psy8370 141 -DF---KPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 141 -~~---~~~~~~~~~D~V~~~~~l~~~ 163 (256)
.. .... ...||+.+|+=-++.-
T Consensus 165 ~~i~~~i~~~-~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 165 DNIFDGIIQP-NERFDFTMCNPPFYSS 190 (299)
T ss_dssp -SSTTTSTT---S-EEEEEE-----SS
T ss_pred cccchhhhcc-cceeeEEecCCccccC
Confidence 11 1111 2379999998665544
No 263
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0069 Score=46.78 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=76.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHh-cC-CCcceEEEccccccC-CCCCCC
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILK-DC-DKLDKCYNVGIQDFK-PEDLNI 149 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~-~~-~~i~~~~~~d~~~~~-~~~~~~ 149 (256)
....+.+.+|+|+|+..-+..|+.. +. .+++.+|+|...++...+.+.. .. ..+ .-+++|..... ..+..+
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v-~~l~~~~~~~La~~~~~~ 153 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEV-NALCGDYELALAELPRGG 153 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeE-eehhhhHHHHHhcccCCC
Confidence 4566899999999999877666543 33 2899999999887765544432 22 223 44566654321 111212
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+==.++...++..+++.+...++..++..|+||-.+++.
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 334455567899999989999999999999999999986
No 264
>KOG2730|consensus
Probab=97.45 E-value=0.00014 Score=54.75 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCC--CCceeEEEe
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDL--NIKYDVIWI 156 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~--~~~~D~V~~ 156 (256)
....|+|.-||.|..+...+..++ .|+++|+++.-+..|+.+.+-.| .++ .|+++|+.++..... ...+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rI-tFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRI-TFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCcee-EEEechHHHHHHHHhhhhheeeeeec
Confidence 567899999999999999988887 89999999999999999988665 578 999999987753211 114566665
Q ss_pred c
Q psy8370 157 Q 157 (256)
Q Consensus 157 ~ 157 (256)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
No 265
>KOG2793|consensus
Probab=97.45 E-value=0.0012 Score=51.49 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHH------HHHhcCCCcceEEEccccccCCCCC-CCc-ee
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE------EILKDCDKLDKCYNVGIQDFKPEDL-NIK-YD 152 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~i~~~~~~d~~~~~~~~~-~~~-~D 152 (256)
...+||++|+|+|..+..++.....+|...|........... .....+..+ .....++...+.... .+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v-~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSV-IVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCce-eEEEEecCCcccHhhccCCccc
Confidence 356799999999987777766555588888876543222211 111222234 444444443332111 124 89
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+++.++... .....++.-++..|..+|.+++.
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE
Confidence 99999988776 34456777788888888866665
No 266
>KOG4589|consensus
Probab=97.43 E-value=0.0041 Score=45.91 Aligned_cols=144 Identities=16% Similarity=0.014 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC------CCCCc
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------DLNIK 150 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~------~~~~~ 150 (256)
+.+..+|||+||-.|.++....++. +. .|.|||+-.- ...+| ...+...|+.+.... .....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG--ATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC--cccccccccCCHHHHHHHHHhCCCCc
Confidence 5778999999999999998876664 22 7999998532 11122 202223355443210 01136
Q ss_pred eeEEEechh--------hhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcC
Q psy8370 151 YDVIWIQWV--------LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 151 ~D~V~~~~~--------l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 221 (256)
.|+|++... ..|... +-...++.-....++|+|.+++-...... ...+.+.+.+ -
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e---------------~~~l~r~l~~-~ 200 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE---------------EALLQRRLQA-V 200 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc---------------hHHHHHHHHH-H
Confidence 899987633 222211 12223444456677899999985321111 2445555543 3
Q ss_pred CcEEEeeeecCCCCcceeeeEEEeccC
Q psy8370 222 LKCVKSEKVTGMPKSLFKIYMFALKPN 248 (256)
Q Consensus 222 f~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (256)
|+.+........-.+.-..++.|++-+
T Consensus 201 f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 201 FTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred hhhcEeeCCccccccccceeeeeeecc
Confidence 555544433333333444555555444
No 267
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.41 E-value=0.003 Score=52.69 Aligned_cols=147 Identities=13% Similarity=0.070 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh------------c--C-C-eEEEEeCCHHHHHHHHHHHHh--------------cCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK------------H--F-D-KIDLLEQSSKFIEQAKEEILK--------------DCDK 130 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~------------~--~-~-~v~~vD~s~~~~~~a~~~~~~--------------~~~~ 130 (256)
+..+|+|+|||+|.++..+... + . . +|+.-|....-....-..+.. .+.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999877655321 1 1 1 566667654332222222211 0001
Q ss_pred -c-ceEEEccccccCCCCCCCceeEEEechhhhccCH--H----------------------------------HHHHHH
Q psy8370 131 -L-DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--E----------------------------------DIIKFL 172 (256)
Q Consensus 131 -i-~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~--~----------------------------------~~~~~l 172 (256)
+ ..-+.+++-.-.++.. +.+++++..++||++. + ++..+|
T Consensus 143 ~~f~~gvpGSFY~RLfP~~--Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL 220 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPAR--SIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL 220 (386)
T ss_pred ceEEEecCccccccccCCC--ceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0122344544445555 8999999999999853 1 234455
Q ss_pred HHHhhhcCCCcEEEEEecccCCCCccccC-------------------------------CCCceeeCHHHHHHHHHhcC
Q psy8370 173 NLCKQILNKNGIIIIKDNVASGVKNEYDD-------------------------------EDSSVVRSLPQFCLLFSKAN 221 (256)
Q Consensus 173 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~g 221 (256)
+.=++-|.|||.++++...+......... .-..|..+.+|+.+.+++.|
T Consensus 221 ~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 221 RARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcC
Confidence 55677889999999985444321110000 01123358999999999877
Q ss_pred -CcEEEeee
Q psy8370 222 -LKCVKSEK 229 (256)
Q Consensus 222 -f~~~~~~~ 229 (256)
|.+...+.
T Consensus 301 sF~I~~le~ 309 (386)
T PLN02668 301 SFAIDKLEV 309 (386)
T ss_pred CEEeeeeEE
Confidence 66655553
No 268
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.39 E-value=0.00043 Score=49.66 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccc-ccCCCCCCCceeEEEechhh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-DFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~-~~~~~~~~~~~D~V~~~~~l 160 (256)
+++++-+|+..=..-...++.|+.++..||.++--++ .+ ++ +++..+...|+. ++.... ++||++.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~--~~-~~---dr~ssi~p~df~~~~~~y~--~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ--EE-FR---DRLSSILPVDFAKNWQKYA--GSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC--cc-cc---cccccccHHHHHHHHHHhh--ccchhhheechh
Confidence 5678889999877777777888889999998762111 11 11 123233333432 222223 389999999888
Q ss_pred hccC---------HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 161 MFIL---------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 161 ~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+|.. +..-.+.+.++.++|||||.++++.+....... ++ . ...+.+..+.-++ .||+.+..-
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-fN--a-hRiYg~~rL~mm~--~gfe~i~tf 144 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-FN--A-HRIYGPIRLAMMF--YGFEWIDTF 144 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-Ee--c-ceeecHhHHHHHh--CCcEEEeee
Confidence 7652 122356888999999999999998665542211 11 1 1123444444444 789888653
No 269
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.37 E-value=0.0064 Score=45.96 Aligned_cols=126 Identities=12% Similarity=0.211 Sum_probs=72.6
Q ss_pred chhhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc---CCeEEEEeCCHHHHHHHHHHH-------------
Q psy8370 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEI------------- 124 (256)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~------------- 124 (256)
-++-+.+++++.+ .......+.++.|-.||.|+++-.+.-.. ...|++-|+++.+++.|++++
T Consensus 32 PVRLAsEi~qR~l-~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 32 PVRLASEIFQRAL-HYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp -HHHHHHHHHHHH-CTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 3444557777776 45555678899999999999877654332 238999999999999998885
Q ss_pred ----------------------------HhcC--CCcceEEEccccccCCC---CCCCceeEEEechh----hhcc---C
Q psy8370 125 ----------------------------LKDC--DKLDKCYNVGIQDFKPE---DLNIKYDVIWIQWV----LMFI---L 164 (256)
Q Consensus 125 ----------------------------~~~~--~~i~~~~~~d~~~~~~~---~~~~~~D~V~~~~~----l~~~---~ 164 (256)
...+ ... .....|+.+.... +.....|+|+...- -+|- +
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~-~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~ 189 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPH-AIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS 189 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--E-EEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCch-hheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC
Confidence 0111 122 4667777764321 11123699997632 1222 2
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 165 DEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 165 ~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
......+|..++++|.+++++.++
T Consensus 190 ~~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 190 GGPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CCcHHHHHHHHHhhCCCCcEEEEe
Confidence 245678999999999555666664
No 270
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.35 E-value=0.012 Score=46.76 Aligned_cols=157 Identities=9% Similarity=0.088 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhc----CCCcceEEEccccc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKD----CDKLDKCYNVGIQD 141 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~----~~~i~~~~~~d~~~ 141 (256)
+++.+.+.+... .....|+.+|||.-.-...+. ... .+..+|++ |+.++.-++.+... ..+. .++..|+.+
T Consensus 68 r~~D~~i~~~~~-~g~~qvV~LGaGlDTr~~Rl~-~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~-~~v~~Dl~~ 143 (260)
T TIGR00027 68 RFFDDFLLAAVA-AGIRQVVILGAGLDTRAYRLP-WPD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHR-RAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHh-cCCcEEEEeCCccccHHHhcC-CCC-CCeEEECCChHHHHHHHHHHHHcCCCCCCce-EEeccCchh
Confidence 455554422222 235679999999887777662 222 45666666 44555555555542 2345 677778751
Q ss_pred -cCC---CC--CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC-----------cc--ccCC
Q psy8370 142 -FKP---ED--LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-----------NE--YDDE 202 (256)
Q Consensus 142 -~~~---~~--~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------~~--~~~~ 202 (256)
+.. .. +....-++++-.++.+++.+...++++.+.+...||+.+++......... .. ....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGS 223 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhccccc
Confidence 110 00 01245588888999999999999999999999889988887532211100 00 1122
Q ss_pred CCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 203 DSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
...+..+..++...|..+||++...
T Consensus 224 ~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 224 GLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ccccCCChhhHHHHHHHCCCeeecC
Confidence 2234467899999999999998764
No 271
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.26 E-value=0.00042 Score=58.75 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..-..|+|+.+|.|.++..|.....= +|+-+ ..+..+....++ | -+ ..++.=-+.++..+. .||+|.+.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G-LI-G~yhDWCE~fsTYPR--TYDLlHA~ 434 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G-LI-GVYHDWCEAFSTYPR--TYDLLHAD 434 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c-cc-hhccchhhccCCCCc--chhheehh
Confidence 33467999999999999998654421 22222 222223322222 1 12 333322233444444 89999999
Q ss_pred hhhhccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 158 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 158 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
.++..... -++..++-++-|+|+|+|.+++.+... ...++..++....++......
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~----------------vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD----------------VLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH----------------HHHHHHHHHHhCcceEEEEec
Confidence 99887643 567889999999999999999953211 235667777777777665443
No 272
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=97.25 E-value=4.6e-05 Score=51.04 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=44.7
Q ss_pred ceeEEEechhhh--ccC--HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCcccc------CCCCceeeCHHHHHHHHHh
Q psy8370 150 KYDVIWIQWVLM--FIL--DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD------DEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 150 ~~D~V~~~~~l~--~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~ 219 (256)
.||+|+|..+-. |++ ++.+..+++.+++.|+|||.|++............. .........++++...+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 489999987643 443 367888999999999999999997543332211000 0011223466778887776
Q ss_pred --cCCcEEEee
Q psy8370 220 --ANLKCVKSE 228 (256)
Q Consensus 220 --~gf~~~~~~ 228 (256)
.||...+..
T Consensus 81 ~evGF~~~e~~ 91 (110)
T PF06859_consen 81 PEVGFSSVEEL 91 (110)
T ss_dssp TTT---EEEEE
T ss_pred cccceEEEEEc
Confidence 589877633
No 273
>KOG4058|consensus
Probab=97.17 E-value=0.0082 Score=42.52 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=71.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKP 144 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~ 144 (256)
+.+..++ ......+..+.+|+|+|.|+.....++.+....+|+|+++-.+..++-..-.++ ... .|..-|+-....
T Consensus 59 eQv~nVL-Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~t-rf~RkdlwK~dl 136 (199)
T KOG4058|consen 59 EQVENVL-SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKST-RFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHH-HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccch-hhhhhhhhhccc
Confidence 4455555 444567779999999999999999888785689999999988777765543333 233 566666554433
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
. .|..|+...+-.-+ ..+-.++..-|..|..++-.
T Consensus 137 ~----dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 R----DYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c----ccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEE
Confidence 2 35555554443333 22344556667777777765
No 274
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0041 Score=50.83 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=41.8
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKH---------FDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
+....+.+..++|||+|+|.++..+++.. ..++..||+|+...+.-++++...
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34456677899999999999998887642 238999999999988888877654
No 275
>KOG1596|consensus
Probab=96.98 E-value=0.0046 Score=47.51 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=69.0
Q ss_pred cCCCCCCCeEEEEcCCCCHhHHHHHHh-cCC-eEEEEeCCHHH----HHHHHHHHHhcCCCcceEEEccccccCCCC-CC
Q psy8370 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKF----IEQAKEEILKDCDKLDKCYNVGIQDFKPED-LN 148 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~-~v~~vD~s~~~----~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-~~ 148 (256)
..+++++.+||-+|+++|....++..- +.. -|++||.|... +..|+++ .++ -.+..|+....... -.
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNi-iPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNI-IPIIEDARHPAKYRMLV 224 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-----CCc-eeeeccCCCchheeeee
Confidence 346789999999999999988887554 333 79999999654 4444433 456 56667776543210 01
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+-.|+|++... ++++...+.-++.-.||+||.++++
T Consensus 225 gmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 225 GMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 25677776522 2244445666788899999999997
No 276
>KOG3115|consensus
Probab=96.96 E-value=0.0021 Score=48.02 Aligned_cols=48 Identities=29% Similarity=0.261 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
.+...+.|||||.|.++..|+...++ -+.|.||-.+.-+..+++++..
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 45678999999999999999777665 7999999999999999888643
No 277
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.94 E-value=0.0068 Score=55.03 Aligned_cols=127 Identities=9% Similarity=-0.038 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-------C-----C-eEEEEeCCH---HHHHHHH-----------HHHHhc-----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-------F-----D-KIDLLEQSS---KFIEQAK-----------EEILKD----- 127 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-------~-----~-~v~~vD~s~---~~~~~a~-----------~~~~~~----- 127 (256)
.+.-+|+|+|-|+|.......+.- . . .++++|..+ +.+..+. +.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999998655544211 1 1 788899644 2222221 111110
Q ss_pred C----------CCcceEEEccccccCCCCCCCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccCCCC
Q psy8370 128 C----------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVASGVK 196 (256)
Q Consensus 128 ~----------~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 196 (256)
+ ..+ .+..+|+.+....-. ..+|+++....--.-+++ --..+++.+++.++|||.+...
T Consensus 136 g~~~~~~~~~~~~l-~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~-------- 205 (662)
T PRK01747 136 GCHRLLFDDGRVTL-DLWFGDANELLPQLD-ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF-------- 205 (662)
T ss_pred CceEEEecCCcEEE-EEEecCHHHHHHhcc-ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe--------
Confidence 0 123 456677766544322 369999987432222222 1246999999999999999863
Q ss_pred ccccCCCCceeeCHHHHHHHHHhcCCcEEEe
Q psy8370 197 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 227 (256)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 227 (256)
-....+++.|..+||++...
T Consensus 206 -----------t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 -----------TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -----------ehHHHHHHHHHHcCCeeeec
Confidence 13467889999999998644
No 278
>KOG1562|consensus
Probab=96.91 E-value=0.0041 Score=49.27 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEccccccCCCCCCCcee
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
...+++||-||.|.|...+..+.+. ..++..+|++...++..++.++.. +.++ .++.+|-..+......+.||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v-~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKV-KLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCce-EEEeccHHHHHHHhccCCce
Confidence 4667899999999999999886652 348999999999999998887643 2466 77777766554322235899
Q ss_pred EEEechhhhccCHH--HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 153 VIWIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 153 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+....=--.|.. -...+.+-+.+.||++|++++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99976432222211 1235778889999999999985
No 279
>KOG0822|consensus
Probab=96.87 E-value=0.0036 Score=53.41 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCHhHHHHHHh---cCC--eEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 82 KTRVLDVGAGIGRISKYLLAK---HFD--KIDLLEQSSKFIEQAKEE-ILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~---~~~--~v~~vD~s~~~~~~a~~~-~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
...|+-+|+|-|-+....++. ... ++++||-+|.++-..+.+ ++.++.++ .++..|++.+.++.. +.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V-tii~~DMR~w~ap~e--q~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV-TIISSDMRKWNAPRE--QADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee-EEEeccccccCCchh--hccchH
Confidence 467889999999877655432 112 799999999988776653 33444677 999999999986544 799999
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+-..-.+-..+--...|..+-+.|||+|+.|=
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 86332211112224688899999999987764
No 280
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.82 E-value=0.0084 Score=47.84 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC
Q psy8370 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145 (256)
Q Consensus 68 ~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~ 145 (256)
++.+.+ ....+.+++..+|.--|.|..+..++.... ..++|+|-++.+++.|++.+...+.++ .+++.++.++...
T Consensus 11 Ll~E~i-~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~-~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVV-ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRV-TLVHGNFANLAEA 88 (314)
T ss_pred HHHHHH-HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcE-EEEeCcHHHHHHH
Confidence 455555 555678889999999999999999998875 379999999999999999998766678 8888877665321
Q ss_pred ---CCCCceeEEEec
Q psy8370 146 ---DLNIKYDVIWIQ 157 (256)
Q Consensus 146 ---~~~~~~D~V~~~ 157 (256)
.+.+.+|-|+..
T Consensus 89 l~~~~i~~vDGiL~D 103 (314)
T COG0275 89 LKELGIGKVDGILLD 103 (314)
T ss_pred HHhcCCCceeEEEEe
Confidence 112356766644
No 281
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.77 E-value=0.15 Score=44.60 Aligned_cols=121 Identities=13% Similarity=0.026 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc---C--CeEEEEeCCHHHHHHHHHHHHhcCCC--cceEE
Q psy8370 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---F--DKIDLLEQSSKFIEQAKEEILKDCDK--LDKCY 135 (256)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~--~~v~~vD~s~~~~~~a~~~~~~~~~~--i~~~~ 135 (256)
+...+++.+++ .+.+..+|.|..||+|.+........ . ..++|.|+++.....|+-++--++.. + ...
T Consensus 172 ~~v~~liv~~l----~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~-~i~ 246 (489)
T COG0286 172 REVSELIVELL----DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA-NIR 246 (489)
T ss_pred HHHHHHHHHHc----CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc-ccc
Confidence 34456666666 33566799999999998776654432 1 36999999999999999988766532 2 444
Q ss_pred EccccccCCC---CCCCceeEEEechhh--------------------hc-c-CH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 136 NVGIQDFKPE---DLNIKYDVIWIQWVL--------------------MF-I-LD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 136 ~~d~~~~~~~---~~~~~~D~V~~~~~l--------------------~~-~-~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|...-+.. ...+.||+|+++--+ .. . +. .....+++.+...|+|||...++
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 4443333222 122479998876111 11 1 11 12267999999999998866654
No 282
>KOG2920|consensus
Probab=96.77 E-value=0.0018 Score=51.02 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHH-------HHHHH---hcCCCcceEEEccccccCCCCC-
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------KEEIL---KDCDKLDKCYNVGIQDFKPEDL- 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a-------~~~~~---~~~~~i~~~~~~d~~~~~~~~~- 147 (256)
...+++|||+|||+|.....+...+...+...|++...++.. ..... .....+.......+.++.....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 356899999999999999998777866888899988776211 00111 1101111223331112222111
Q ss_pred CCceeEEEechhhhccCHHHHHHH-HHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~i~ 188 (256)
.-.||+|.++-.+...+. .... .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhh
Confidence 016999999988877743 2233 55667777889988875
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.75 E-value=0.0028 Score=48.02 Aligned_cols=140 Identities=7% Similarity=-0.011 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC------CCCCC
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK-----HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~------~~~~~ 149 (256)
++..|+|+|.-.|..+.+++.. +..+|+|+|++-...............++ +++.+|..+... ....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI-~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI-TFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE-EEEES-SSSTHHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce-EEEECCCCCHHHHHHHHHhhccC
Confidence 5789999999999888776542 22399999996433222111111112477 899998765421 11112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCcee---eCHHHHHHHHHhcC-CcEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV---RSLPQFCLLFSKAN-LKCV 225 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g-f~~~ 225 (256)
...+|+.... |.. +...+.|+.....+++|+++++.+......... ......|. -....+.+.++++. |++.
T Consensus 111 ~~vlVilDs~-H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~-~~~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 111 HPVLVILDSS-HTH--EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPES-WFPDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS--------------HHHHHHHHHTTTTEEEE
T ss_pred CceEEEECCC-ccH--HHHHHHHHHhCccCCCCCEEEEEeccccccccc-cccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 3445554322 211 223567888999999999999975432221110 00111121 13566777777765 5554
No 284
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.72 E-value=0.0032 Score=42.04 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s 113 (256)
.++-.+........+...-+|||||+|.+...|...|+ .=.|+|.-
T Consensus 44 AyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 44 AYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred HHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 45555553333445677899999999999999988888 56777764
No 285
>KOG1122|consensus
Probab=96.70 E-value=0.093 Score=43.93 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.++++.+|||+.+-.|.=+.++++. .-..|++.|.+..-+.....++...+.+-+.....|..+++...-.++||=|+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 5788999999999999766666543 22389999999999999999998877333255666766554222223688887
Q ss_pred echhhh---------------------ccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLM---------------------FILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~---------------------~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...-.. ..+ .-..++|..+...+++||+|+-+
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~-~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYA-HLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhH-HHHHHHHHHHHhhccCCcEEEEE
Confidence 431110 010 11346888889999999999986
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.65 E-value=0.0085 Score=46.39 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=46.5
Q ss_pred CeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcC-------CCcceEEEccccccCCCCCCCcee
Q psy8370 83 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL---KDC-------DKLDKCYNVGIQDFKPEDLNIKYD 152 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~-------~~i~~~~~~d~~~~~~~~~~~~~D 152 (256)
.+|||.-+|-|.-+..++..|+ +|+++|-|+-+....+.-+. ... .++ +++.+|..++.... ..+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri-~l~~~d~~~~L~~~-~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI-QLIHGDALEYLRQP-DNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE-EEEES-CCCHCCCH-SS--S
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC-EEEcCCHHHHHhhc-CCCCC
Confidence 4999999999999999988887 89999999987655554332 111 256 88999988876532 24899
Q ss_pred EEEechhhhc
Q psy8370 153 VIWIQWVLMF 162 (256)
Q Consensus 153 ~V~~~~~l~~ 162 (256)
+|+..=++.+
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999866654
No 287
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.64 E-value=0.0097 Score=49.90 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcC--C-CcceEEEccccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
.+.+|||.=+|+|.-+..++.. +..+|+.-|+|+.+++..+++...++ . .+ .+...|+..+.... ...||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-EVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-EEEES-HHHHHCHS-TT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-EEehhhHHHHhhhc-cccCCEEE
Confidence 4579999999999887777665 44599999999999999999987665 2 34 67788887765311 13799997
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..-. .....++..+.+.++.||.+.++.
T Consensus 127 lDPf------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPF------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--S------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCC------CCccHhHHHHHHHhhcCCEEEEec
Confidence 6422 233468888999999999999973
No 288
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.64 E-value=0.016 Score=47.55 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-ccccCCCCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-~~~~~~~~~~~~~D~ 153 (256)
.+..++.+|+-+|+| .|..+..++. .+ .+|+++|.+++-.+.|++.-.. .++... ......... .+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd------~~i~~~~~~~~~~~~~--~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD------HVINSSDSDALEAVKE--IADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc------EEEEcCCchhhHHhHh--hCcE
Confidence 356788999988887 4567777777 45 5999999999988888876322 333322 111111122 4899
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
|+.... ...+....+.|+++|.+++.-..
T Consensus 233 ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 988754 23566678899999999998555
No 289
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.018 Score=47.63 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCC-ceeEEEechhh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI-KYDVIWIQWVL 160 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~-~~D~V~~~~~l 160 (256)
..+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.++.. - .+...|+.+.....-.. .+|+++...-+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~-~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----G-DIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----C-ceeechHhhcChhhccccCCCEEEeCCCC
Confidence 468999999999999999888987888999999988888777653 1 56677777665433212 58999866332
Q ss_pred hccCH-----------HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEe--
Q psy8370 161 MFILD-----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS-- 227 (256)
Q Consensus 161 ~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~-- 227 (256)
+.++. ..+..-+.++...++| .+++.++....... ...+.+.+.+.|++.||.+...
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~--------~~~~~~~i~~~L~~~GY~~~~~il 147 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS--------KGQTFDEIKKELEELGYGVEFNIL 147 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc--------CchHHHHHHHHHHHcCCcchHhee
Confidence 22211 1122334455566677 55555554443221 2246789999999999973321
Q ss_pred -eeecCCCCcceeeeEEE
Q psy8370 228 -EKVTGMPKSLFKIYMFA 244 (256)
Q Consensus 228 -~~~~~~~~~~~~~~~~~ 244 (256)
...++.|..--.+++..
T Consensus 148 na~dyGvPQ~ReRvfiig 165 (328)
T COG0270 148 NAADYGVPQSRERVFIVG 165 (328)
T ss_pred eHHhcCCCCCccEEEEEE
Confidence 22355565555555553
No 290
>KOG1227|consensus
Probab=96.56 E-value=0.0023 Score=50.75 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCCHhHH-HHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 81 GKTRVLDVGAGIGRISK-YLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.+..|+|+-+|-|+++. .+...|++.|+++|++|..++..+...+..+ .+. ....+|-+...+. ...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~-~i~~gd~R~~~~~---~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC-RITEGDNRNPKPR---LRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH-HhhhccccccCcc---ccchheeec
Confidence 35889999999999999 7778899999999999999999998887654 223 3445555444332 246666654
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCC-Cc-EEEEEecccCCC
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNK-NG-IIIIKDNVASGV 195 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lkp-gG-~l~i~~~~~~~~ 195 (256)
. +|.. ++-.-.+.++|+| || ++-+.++.....
T Consensus 270 L----lPSs--e~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 270 L----LPSS--EQGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred c----cccc--ccchHHHHHHhhhcCCcEEEEeccccccc
Confidence 2 2221 1233345567777 44 555555544443
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=0.048 Score=44.78 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=88.6
Q ss_pred EEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccC
Q psy8370 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 85 vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~ 164 (256)
|+|+-||.|.+..-+...|+.-+.++|+++.+.+.-+.++.. .....|+.+.....- +.+|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~-~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDI-PDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhC-CCcCEEEecCCCcccc
Confidence 689999999999999888886677899999988887777532 234567776654322 2589998652221111
Q ss_pred --------HHHHHHHHHHH---hhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---e
Q psy8370 165 --------DEDIIKFLNLC---KQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK---V 230 (256)
Q Consensus 165 --------~~~~~~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~---~ 230 (256)
.+....++.+. .+.++|. +++.++....... .. ......+...|+..||.+..... .
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~----~~---~~~~~~i~~~l~~~GY~v~~~~l~a~d 144 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH----DK---GRTFKVIIETLEELGYKVYYKVLNAKD 144 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc----cc---chHHHHHHHHHHhCCCEEEEEEEcHHH
Confidence 01222333333 3444674 5555544432211 00 12346778889999998754332 3
Q ss_pred cCCCCcceeeeEEEec
Q psy8370 231 TGMPKSLFKIYMFALK 246 (256)
Q Consensus 231 ~~~~~~~~~~~~~~l~ 246 (256)
.+.|..--.+++.+.+
T Consensus 145 yGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 145 FGVPQNRERIYIVGFR 160 (315)
T ss_pred CCCCCCccEEEEEEEe
Confidence 5557666666666655
No 292
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.51 E-value=0.0098 Score=47.18 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc-------CCCcceEEEccccccC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH---------FDKIDLLEQSSKFIEQAKEEILKD-------CDKLDKCYNVGIQDFK 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~-------~~~i~~~~~~d~~~~~ 143 (256)
..+.+|+|+|+|+|.++..++... ..+++.||+|+.+.+.-++++... ..++ .+ ..++.+.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i-~w-~~~l~~~p 94 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPI-RW-LDDLEEVP 94 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCE-EE-ESSGGCS-
T ss_pred CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCcc-ch-hhhhhccc
Confidence 345899999999999999887632 127999999999988888887542 1122 22 22333322
Q ss_pred CCCCCCceeEEEechhhhccC
Q psy8370 144 PEDLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~ 164 (256)
..-+|+++.++..+|
T Consensus 95 ------~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 ------FPGFIIANELFDALP 109 (252)
T ss_dssp ------CCEEEEEESSGGGS-
T ss_pred ------CCEEEEEeeehhcCc
Confidence 246677777777664
No 293
>KOG2651|consensus
Probab=96.46 E-value=0.009 Score=49.04 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEE 123 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 123 (256)
+.+.+++.......+-..|+|+|+|.|.++..+.-...-.|.++|-|....+.|+..
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 334444434445677789999999999999998544434999999998887777654
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=96.19 E-value=0.02 Score=46.22 Aligned_cols=58 Identities=21% Similarity=0.080 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 126 (256)
..++.+++ +. ...++..|||.=||+|..+....+.+- +.+|+|++++..+.|++++..
T Consensus 195 ~~L~erlI-~~-~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRII-LA-SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHH-HH-hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 35566665 22 247789999999999999998755554 899999999999999999864
No 295
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.16 E-value=0.052 Score=44.66 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=89.6
Q ss_pred eEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhcc
Q psy8370 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 84 ~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~ 163 (256)
+++|+-||-|.+...+...|+..+.++|+++.+.+.-+.++. .....|+.+.....-.+.+|+++...-+..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence 689999999999999988898789999999998888887764 4566777766532110038999866322211
Q ss_pred ---------CH--HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee---
Q psy8370 164 ---------LD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK--- 229 (256)
Q Consensus 164 ---------~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~--- 229 (256)
.+ ..+-.-+-++.+.++|. +++.++....... ........+...|++.||.+.....
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~-------~~~~~~~~i~~~l~~lGY~v~~~vlna~ 145 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSS-------KNGEVFKEILEELEELGYNVQWRVLNAA 145 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTG-------GGHHHHHHHHHHHHHTTEEEEEEEEEGG
T ss_pred eccccccccccccchhhHHHHHHHhhccce--EEEecccceeecc-------ccccccccccccccccceeehhccccHh
Confidence 11 11222223334456784 3444444433211 0002357788889999998764443
Q ss_pred ecCCCCcceeeeEEEeccCC
Q psy8370 230 VTGMPKSLFKIYMFALKPNK 249 (256)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~ 249 (256)
.++.|..--.+++.+.+...
T Consensus 146 ~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp GGTSSBE-EEEEEEEEEGGG
T ss_pred hCCCCCceeeEEEEEECCCC
Confidence 35567776677777766543
No 296
>KOG2539|consensus
Probab=96.14 E-value=0.035 Score=46.99 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEcCCCCHhHHHH--HHhc-CCeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEE-ccccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYL--LAKH-FDKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYN-VGIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l--~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~-~d~~~~~~~~~~~~~ 151 (256)
....+..++|+|.|.|.-...+ +-++ ...++.||.|..|........++ +...+ .... .-.....+......|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhcccCCCCcccce
Confidence 4455788999999877544333 2233 34899999999999999888876 21112 1222 222333343333469
Q ss_pred eEEEechhhhccCH-HHHHHHHHH-HhhhcCCCcEEEEEecccC
Q psy8370 152 DVIWIQWVLMFILD-EDIIKFLNL-CKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 152 D~V~~~~~l~~~~~-~~~~~~l~~-~~~~LkpgG~l~i~~~~~~ 193 (256)
|+|++.+.++++.. .......+. +++..++|+.+++.+....
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999999998855 333344444 4556688999998764443
No 297
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.07 E-value=0.0084 Score=48.51 Aligned_cols=79 Identities=22% Similarity=0.146 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC---CC-CCCcee
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---ED-LNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~---~~-~~~~~D 152 (256)
...++...+|---|.|..+..+++... .+++|+|-++.+++.+++++.....++ .++..++.++.. .. ....+|
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~-~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRF-IFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTE-EEEES-GGGHHHHHHHTTTTS-EE
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceE-EEEeccHHHHHHHHHHccCCCccC
Confidence 467788999999999999999987643 499999999999999998877655677 788887766532 11 113577
Q ss_pred EEEec
Q psy8370 153 VIWIQ 157 (256)
Q Consensus 153 ~V~~~ 157 (256)
.|+..
T Consensus 96 giL~D 100 (310)
T PF01795_consen 96 GILFD 100 (310)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77644
No 298
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.04 E-value=0.023 Score=44.03 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 122 (256)
+++.+++ +. ...++..|||.=||+|..+..+.+.+- +.+|+|+++...+.|++
T Consensus 179 ~l~~~lI-~~-~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLI-KA-STNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHH-HH-HS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHH-Hh-hhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4555555 22 136789999999999999999866665 89999999999998864
No 299
>PRK13699 putative methylase; Provisional
Probab=95.88 E-value=0.047 Score=42.55 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
.++..++ +. ...++..|||.-||+|..+....+.+- +.+|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i-~~-~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLI-ES-FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHH-HH-hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4555555 21 235788999999999999998766555 8999999999999999988653
No 300
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.046 Score=44.94 Aligned_cols=100 Identities=21% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..+|+|-=+|+|.=++..+..... +++.-|+||.+.+..+++++.+ +.+. ..+..|...+..... ..||+|=..=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~-~v~n~DAN~lm~~~~-~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDA-EVINKDANALLHELH-RAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccc-eeecchHHHHHHhcC-CCccEEecCCC
Confidence 789999999999988877665443 8999999999999999999876 3444 555677766654422 36888755321
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....-++..+.+.++.||.+.++-
T Consensus 131 ------GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 131 ------GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ------CCCchHHHHHHHHhhcCCEEEEEe
Confidence 122347777888888899999973
No 301
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.76 E-value=0.26 Score=36.38 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=76.9
Q ss_pred EcCCCCHhHHHHHHhc--CCeEEEEeCC--HHHHHHHH---HHHHhcC-CCcceEEEccccccCCCC--CCCceeEEEec
Q psy8370 88 VGAGIGRISKYLLAKH--FDKIDLLEQS--SKFIEQAK---EEILKDC-DKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 157 (256)
Q Consensus 88 iG~G~G~~~~~l~~~~--~~~v~~vD~s--~~~~~~a~---~~~~~~~-~~i~~~~~~d~~~~~~~~--~~~~~D~V~~~ 157 (256)
+|=|.=.++..|+... ..+++++-++ ++..+.-. .++.... ..+.-.+..|+..+.... ..+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 4555555666666553 2366665444 33333221 2222211 223235677887776544 23589999987
Q ss_pred hhhhc-----------cCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 158 WVLMF-----------ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 158 ~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+--.. .+..-+..+++.+.++|+++|.+.++-..... ...| ++..+.+++||.+.+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------y~~W-----~i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------YDSW-----NIEELAAEAGLVLVR 149 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------Cccc-----cHHHHHHhcCCEEEE
Confidence 42211 11234677999999999999999997322111 0112 355778889999876
Q ss_pred eeeecCCCCccee
Q psy8370 227 SEKVTGMPKSLFK 239 (256)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (256)
.. .+....||
T Consensus 150 ~~---~F~~~~yp 159 (166)
T PF10354_consen 150 KV---PFDPSDYP 159 (166)
T ss_pred Ee---cCCHHHCC
Confidence 54 34444444
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.50 E-value=0.18 Score=44.12 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-----------cCCC
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-----------FKPE 145 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-----------~~~~ 145 (256)
..++.+|+-+|||. |..+...+.. |+ +|+++|.++.-++.+++. + . .+...+..+ ....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----G--A-~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----G--A-EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C--C-eEEEeccccccccccchhhhcchh
Confidence 45789999999995 5555555554 55 899999999988877763 1 1 222111111 0000
Q ss_pred ----------CCCCceeEEEechhhhccCHHHHHHH-HHHHhhhcCCCcEEEEEe
Q psy8370 146 ----------DLNIKYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 146 ----------~~~~~~D~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~i~~ 189 (256)
+..+.+|+|+.......-+. ..+ .+++.+.+||||.++..-
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEc
Confidence 00025899998765432211 134 588999999999988763
No 303
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.30 E-value=1 Score=39.06 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC---------------C
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---------------D 146 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~---------------~ 146 (256)
.-+++|+-||.|.+..-+-..|+..|.++|+++.+.+.-+.++.... .. .....|+.+.... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~-~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-AT-HRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-cc-ceeccChhhCccccccccchhhhhhhhhc
Confidence 56999999999999999877788778889999998887777653111 12 3345565554321 0
Q ss_pred CCCceeEEEechhhhccCH-----------------HHHHHHHHHH---hhhcCCCcEEEEEecccCCCCccccCCCCce
Q psy8370 147 LNIKYDVIWIQWVLMFILD-----------------EDIIKFLNLC---KQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~-----------------~~~~~~l~~~---~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 206 (256)
..+.+|+++...-+..++. +....++.++ .+..+|. +++.++...... +..
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s-------~~~ 236 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS-------HDK 236 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc-------ccc
Confidence 1125788885522221110 1111233333 3344664 444444443321 111
Q ss_pred eeCHHHHHHHHHhcCCcEEEe------------eeecCCCCcceeeeEEEecc
Q psy8370 207 VRSLPQFCLLFSKANLKCVKS------------EKVTGMPKSLFKIYMFALKP 247 (256)
Q Consensus 207 ~~~~~~~~~~l~~~gf~~~~~------------~~~~~~~~~~~~~~~~~l~~ 247 (256)
..+...+.+.|++.||.+... .... .|..--.+++.+.+.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~ 288 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRR 288 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeC
Confidence 234567888899999998521 1122 565555666666553
No 304
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.22 E-value=0.1 Score=42.09 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCHhHHHHHHhc-------C--------------CeEEEEeCCH--HHHHHHHHHHHhc-----------
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKH-------F--------------DKIDLLEQSS--KFIEQAKEEILKD----------- 127 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~-------~--------------~~v~~vD~s~--~~~~~a~~~~~~~----------- 127 (256)
..+||-||.|.|.=...++... . -.++.||+.+ ..++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999986444333221 0 1688999873 4555555444322
Q ss_pred -------CCCcceEEEccccccCCCC-----CCCceeEEEechhhhcc---CHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 128 -------CDKLDKCYNVGIQDFKPED-----LNIKYDVIWIQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 128 -------~~~i~~~~~~d~~~~~~~~-----~~~~~D~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..++ .|.+.|+......+ ..+..++|...+.+..+ ......++|..+-..++||..|+|++...
T Consensus 167 ~~~~~~~~~~~-~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNV-SFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceee-eEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 1234 77888877665422 11146888877776544 22566789999999999999999998655
Q ss_pred CCC
Q psy8370 193 SGV 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 246 SYS 248 (315)
T PF11312_consen 246 SYS 248 (315)
T ss_pred Cch
Confidence 543
No 305
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.13 E-value=0.059 Score=45.26 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=52.2
Q ss_pred CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 129 DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 129 ~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+++ .++.+++.+.......+++|.++..+.+.+++++...+.++++.+.++|||.++.-..
T Consensus 275 drv-~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 275 DRV-RIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CeE-EEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 567 8899999887653323589999999999999999999999999999999999999643
No 306
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.88 E-value=0.4 Score=38.98 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=92.4
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcC----CCcceEEEccccccCCCC-----C--CC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPED-----L--NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~-----~--~~ 149 (256)
-..|+-+|||--.-+..+ ..+. .+...|++ |+.++.-++.+...+ .+. .++..|+.+..... + ..
T Consensus 93 ~~qvViLgaGLDTRayRl-~~~~-~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~-~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL-DWPK-GTRVFEVDLPEVIEFKKKLLAERGATPPAHR-RLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeec-CCCC-CCeEEECCCcHHHHHHHHHhhhcCCCCCceE-EEEeccccccchHHHHHhcCCCcC
Confidence 688999999976665554 2222 45555555 566666666666544 245 78888887332111 0 12
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC----CC-c--cccC-------CCCcee-eCHHHHH
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG----VK-N--EYDD-------EDSSVV-RSLPQFC 214 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~-~--~~~~-------~~~~~~-~~~~~~~ 214 (256)
..=++++-.++.+++++...+++..+...+.||..++........ .. . .... ....+. ....++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 445888899999999999999999999999998888876431110 00 0 0000 011122 3589999
Q ss_pred HHHHhcCCcEEEe
Q psy8370 215 LLFSKANLKCVKS 227 (256)
Q Consensus 215 ~~l~~~gf~~~~~ 227 (256)
..+.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999988765
No 307
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.77 E-value=0.28 Score=38.91 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
-.++.|+-+| -.-..+..++--+ +++|..||+++..++...+.....+.+ + ..+..|+.+..|++-...||+.+..
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~i-e~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNI-EAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccch-hheeehhcccChHHHHhhCCeeecC
Confidence 3467899998 4445555544334 559999999999999998888877744 6 8889999888775544589998875
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCC---cEEEEEecccCCCCccccCCCCceeeCHHHHHH-HHHhcCCcEEEee
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKN---GIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL-LFSKANLKCVKSE 228 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gf~~~~~~ 228 (256)
-. +.+ +.+..++-+-...||.- |++.++-...+ .....++++ ++.+.||.+.+..
T Consensus 229 Pp-eTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ress-------------idkW~eiQr~lIn~~gvVITdii 287 (354)
T COG1568 229 PP-ETI--KALKLFLGRGIATLKGEGCAGYFGITRRESS-------------IDKWREIQRILINEMGVVITDII 287 (354)
T ss_pred ch-hhH--HHHHHHHhccHHHhcCCCccceEeeeecccc-------------HHHHHHHHHHHHHhcCeeeHhhh
Confidence 21 111 23345555556667655 77777521110 111245555 6667787766544
No 308
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.67 E-value=0.021 Score=39.82 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=47.4
Q ss_pred eEEEccccccCCCCCCCceeEEEechhhhccCHH-HHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHH
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE-DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 211 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
.+..+|+.+....-. ..+|+|+....--.-+++ --..+++.+++.++|||.+... . ...
T Consensus 34 ~L~~gDa~~~l~~l~-~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty-----------s--------~a~ 93 (124)
T PF05430_consen 34 TLWFGDAREMLPQLD-ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY-----------S--------SAG 93 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------BH
T ss_pred EEEEcHHHHHHHhCc-ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe-----------e--------chH
Confidence 566777765443221 379999987432222111 1136999999999999988862 1 125
Q ss_pred HHHHHHHhcCCcEEEee
Q psy8370 212 QFCLLFSKANLKCVKSE 228 (256)
Q Consensus 212 ~~~~~l~~~gf~~~~~~ 228 (256)
.+++.|.++||.+.+..
T Consensus 94 ~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 94 AVRRALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHHHHHCTEEEEEEE
T ss_pred HHHHHHHHcCCEEEEcC
Confidence 68999999999986544
No 309
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.65 E-value=0.14 Score=42.57 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+||-+|+| .|..+..++.. |..+|+++|.+++-++.+++. .. ..+......++.+..... +.+|+|+.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga--~~vi~~~~~~~~~~~~~~--g~~D~vid 241 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA--DKLVNPQNDDLDHYKAEK--GYFDVSFE 241 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC--cEEecCCcccHHHHhccC--CCCCEEEE
Confidence 3467889988875 34455555544 555799999999888877653 11 011011111222221111 25899886
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
...- ...++.+.+.|++||.+++..
T Consensus 242 ~~G~--------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 242 VSGH--------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 5331 135666778899999999864
No 310
>KOG0821|consensus
Probab=94.60 E-value=0.11 Score=39.67 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=50.1
Q ss_pred ccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc
Q psy8370 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~ 141 (256)
...+.-.+.-|.+||.|.|..++.+++.+..+...||.+...+.-.+-..+....+. .++.+|+..
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~-~IHh~D~LR 109 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKL-RIHHGDVLR 109 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcce-EEeccccce
Confidence 334455678899999999999999999998899999999887776665555433455 666777644
No 311
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.46 E-value=0.42 Score=39.93 Aligned_cols=102 Identities=18% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-ccc-ccCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQ-DFKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-d~~-~~~~~~~~~~~D~V 154 (256)
..++.+|+-+|||+ |.++..+++. |+.+|+++|.++.=++.|++...... + ..... +.. ..........+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~--~-~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV--V-VNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE--e-ecCccccHHHHHHHHhCCCCCCEE
Confidence 34445999999995 6666555544 56699999999999999987543210 0 01111 110 00011111259999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecc
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 191 (256)
+-... . ...+..+.+.++|+|.+.+.-..
T Consensus 243 ie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG---S-----PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC---C-----HHHHHHHHHHhcCCCEEEEEecc
Confidence 87644 1 24788889999999999987544
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.43 E-value=0.29 Score=41.40 Aligned_cols=109 Identities=15% Similarity=0.052 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-ccc-cCCCCCCCceeE
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQD-FKPEDLNIKYDV 153 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-~~~-~~~~~~~~~~D~ 153 (256)
...++.+||.+|||. |..+..++.... .++++++.+++..+.+++.... .+......+ +.. .........+|+
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---ETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 456788999999987 778777776643 3699999999988888765211 110111111 111 100011125898
Q ss_pred EEechhhh-------cc------CHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 154 IWIQWVLM-------FI------LDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 154 V~~~~~l~-------~~------~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+....-. ++ +..+....+..+.+.++++|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 88753211 11 00112357788899999999999874
No 313
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.42 E-value=0.5 Score=37.27 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHh----c--CCeEEEEeCCH--------------------------HHHHHHHHHHH
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSS--------------------------KFIEQAKEEIL 125 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~----~--~~~v~~vD~s~--------------------------~~~~~a~~~~~ 125 (256)
...-++.|+|.||-.|..+..+... + ..+++++|.=+ ...+.+++++.
T Consensus 71 ~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~ 150 (248)
T PF05711_consen 71 AEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFA 150 (248)
T ss_dssp HTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCC
T ss_pred hcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHH
Confidence 3456789999999999876654321 1 12677776321 12344444444
Q ss_pred hcC---CCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCC
Q psy8370 126 KDC---DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202 (256)
Q Consensus 126 ~~~---~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 202 (256)
..+ .++ .++.+.+.+..+......+-++....-++ +.....|+.++..|.|||++++-+... .++
T Consensus 151 ~~gl~~~~v-~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY~~-~gc------ 218 (248)
T PF05711_consen 151 RYGLLDDNV-RFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDYGH-PGC------ 218 (248)
T ss_dssp CTTTSSTTE-EEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESSTTT-HHH------
T ss_pred HcCCCcccE-EEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCCCC-hHH------
Confidence 332 356 88999987776643322454444442222 445679999999999999999864333 111
Q ss_pred CCceeeCHHHHHHHHHhcCCcE
Q psy8370 203 DSSVVRSLPQFCLLFSKANLKC 224 (256)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~gf~~ 224 (256)
.+.+.+.+.+.|...
T Consensus 219 -------r~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 219 -------RKAVDEFRAEHGITD 233 (248)
T ss_dssp -------HHHHHHHHHHTT--S
T ss_pred -------HHHHHHHHHHcCCCC
Confidence 234556667777643
No 314
>PRK13699 putative methylase; Provisional
Probab=94.36 E-value=0.18 Score=39.35 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 168 IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 168 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
....+.+++|+|||||.+++.... .....+..+++++||.+..
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~----------------~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGW----------------NRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecc----------------ccHHHHHHHHHHCCCEEee
Confidence 457889999999999988863100 1124566788899998663
No 315
>KOG2198|consensus
Probab=94.24 E-value=2.7 Score=34.92 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCCCC-----
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFD-----KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED----- 146 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~~~----- 146 (256)
...++.+|||+.+-.|.=+..+.+..++ .|++-|.++.=+........... ..+ .+...++..++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~-~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNL-LVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcce-eeecccceeccccccccCc
Confidence 5688999999999999988877776532 58888999876666666554332 122 33333433332210
Q ss_pred --CCCceeEEEech-------------hhhc---------cCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 147 --LNIKYDVIWIQW-------------VLMF---------ILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 --~~~~~D~V~~~~-------------~l~~---------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....||-|++.. .+.. ++ .-...++.+..+.||+||.++-++
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~-~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLH-ALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCCh-HHHHHHHHHHHHHhcCCCEEEEec
Confidence 113588887541 1111 11 112458889999999999999863
No 316
>KOG2078|consensus
Probab=94.18 E-value=0.028 Score=46.99 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--C-CcceEEEccccccC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYNVGIQDFK 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~i~~~~~~d~~~~~ 143 (256)
..++..|.|+-||.|-++..++..++ +|++.|.++++++..+.+..... . ++ ..+..|..++.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~i-ei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAI-EIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhhe-eeecccHHHHh
Confidence 37789999999999999999988886 99999999999999998876432 1 24 56666655443
No 317
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.14 E-value=0.11 Score=39.10 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcC----CCcceEEEccccccCCCC-------CCC
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPED-------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~----~~i~~~~~~d~~~~~~~~-------~~~ 149 (256)
...|+.+|||.-.....+..... .+..+|++ |++++.-++.+...+ .+. .++..|+.+....+ +.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~-~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDLPEVIALKRRLLPESGARPPANY-RYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTT-TEEEEEEE-HHHHHHHHHHHHHTHHHHHEES-SEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CcEEEEcCCCCCchHHHhhcccc-ceEEEEeCCHHHHHHHHHHHHhCcccCCcce-eEEeccccchhhHHHHHHhCCCCC
Confidence 34899999999988888855432 34444444 445555555555432 124 57888887532100 113
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHH
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLC 175 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~ 175 (256)
..-++++-.++.+++++....+++.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 56788888999999988888887765
No 318
>PTZ00357 methyltransferase; Provisional
Probab=94.08 E-value=0.28 Score=43.93 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCHhHHHHHHh----cCC-eEEEEeCCHHHHHHHHHHHH---hc-------CCCcceEEEccccccCCCCC
Q psy8370 83 TRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEIL---KD-------CDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~---~~-------~~~i~~~~~~d~~~~~~~~~ 147 (256)
..|+-+|+|-|-+....++. +.+ +|++||-++.+......+.. .+ +..+ +++..|++.+.....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~V-tII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTL-EVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeE-EEEeCcccccccccc
Confidence 45899999999877665443 223 89999999775544444432 22 2246 899999999864320
Q ss_pred ---------CCceeEEEechhhhccCHHHHHHHHHHHhhhcCC----CcE
Q psy8370 148 ---------NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK----NGI 184 (256)
Q Consensus 148 ---------~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp----gG~ 184 (256)
-+.+|+|++-..-.+=..+--...|..+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999985321111112223466667777765 665
No 319
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.07 E-value=0.3 Score=37.72 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHhccCC--CCCCCeEEEEcCCCCHhHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEc-c
Q psy8370 67 QFLSSLYCQKKS--DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNV-G 138 (256)
Q Consensus 67 ~~l~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~-d 138 (256)
+.+..++..-.. ..++.++||||.|.--.--.+-. -|+ +.+|.|+++..++.|+..+..+. ..+ ++... |
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I-~lr~qk~ 139 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAI-RLRRQKD 139 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhhe-eEEeccC
Confidence 445555522222 23567889999887543333222 234 89999999999999999887552 223 33322 2
Q ss_pred ccccCCC--CCCCceeEEEechhhhcc
Q psy8370 139 IQDFKPE--DLNIKYDVIWIQWVLMFI 163 (256)
Q Consensus 139 ~~~~~~~--~~~~~~D~V~~~~~l~~~ 163 (256)
-....+. .....||+++|+--+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 2222211 102479999999666643
No 320
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.99 E-value=0.74 Score=31.29 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
..++|+|+|-|.= ..+..|+++|+ .++++|+++. .+. ..+ .+...|+.+....-- ...|+|++..
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~-------~g~-~~v~DDitnP~~~iY-~~A~lIYSiR- 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP-------EGL-RFVVDDITNPNISIY-EGADLIYSIR- 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc-------ccc-eEEEccCCCccHHHh-hCccceeecC-
Confidence 4569999998865 46677777888 7999999986 111 245 789999887643211 1378888752
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|++++...+-.+.+.++ ..+++.
T Consensus 79 ----pppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 79 ----PPPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred ----CCHHHHHHHHHHHHhhC--CCEEEE
Confidence 33556666666666554 345554
No 321
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.91 E-value=0.84 Score=38.52 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEcCCCCHh----HHHHHHh--cCC--eEEEEeC----CHHHHHHHHHHHHhc----CCCcceEEEc---c
Q psy8370 78 SDPGKTRVLDVGAGIGRI----SKYLLAK--HFD--KIDLLEQ----SSKFIEQAKEEILKD----CDKLDKCYNV---G 138 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~----~~~l~~~--~~~--~v~~vD~----s~~~~~~a~~~~~~~----~~~i~~~~~~---d 138 (256)
......+|+|+|.|.|.- ...|+.+ |++ ++|+|+. +...++.+.+++... +... +|... +
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f-ef~~v~~~~ 185 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF-EFHPVVVES 185 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE-EEEecccCc
Confidence 456778999999999963 3334333 233 8999999 777777777666532 3333 44442 3
Q ss_pred ccccCCC---CCCCceeEEEechhhhccCHH------HHHHHHHHHhhhcCCCcEEEEE
Q psy8370 139 IQDFKPE---DLNIKYDVIWIQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 139 ~~~~~~~---~~~~~~D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
++++.+. -..+..=+|.+...+|++.++ ....+|+. .+.|+|.-.+++.
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 3333211 011233344455678888521 23345544 4578998655554
No 322
>KOG1201|consensus
Probab=93.84 E-value=0.58 Score=37.62 Aligned_cols=78 Identities=22% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--------CC
Q psy8370 79 DPGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--------DL 147 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--------~~ 147 (256)
...++.||=-|+|.|. ++..++++|+ .+...|++++..+...+..+..+ .+ ..+.+|+.+...- .+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~-~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EA-KAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ce-eEEEecCCCHHHHHHHHHHHHHh
Confidence 4557889988988883 7778888888 89999999988887777777654 55 7788887665321 11
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.|..|+++.+..
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 367999998854
No 323
>KOG0024|consensus
Probab=93.83 E-value=0.22 Score=40.40 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=65.8
Q ss_pred ccCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEE-EccccccCCC-CCCC
Q psy8370 75 QKKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCY-NVGIQDFKPE-DLNI 149 (256)
Q Consensus 75 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~-~~d~~~~~~~-~~~~ 149 (256)
+......+.+||-+|+|. |..+..+++. |+.+|+.+|+++.-++.|++ +.... .+..... ..++.+.... .+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhcccc
Confidence 344678899999999996 4444444433 67799999999999999998 43211 1110000 0111111110 0112
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|+.+....+ +..++.....++++|.+++...
T Consensus 242 ~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 242 QPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred CCCeEEEccCc--------hHHHHHHHHHhccCCEEEEecc
Confidence 58998877443 3456667788899999888754
No 324
>KOG3924|consensus
Probab=93.81 E-value=0.24 Score=41.24 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=74.2
Q ss_pred HHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhc-CCeEEEEeCCHHHHHHHHHH---HH----hcC---CCcceEE
Q psy8370 67 QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE---IL----KDC---DKLDKCY 135 (256)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~---~~----~~~---~~i~~~~ 135 (256)
..+..+. +..+..+...-.|+|+|-|.+...++..+ +..-+|+++....-+.+..+ +. ..+ ..+ ..+
T Consensus 179 ~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~-~~i 256 (419)
T KOG3924|consen 179 EQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI-ETI 256 (419)
T ss_pred HHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce-eec
Confidence 4555555 55568889999999999999998886654 44777887775444433332 21 112 233 566
Q ss_pred EccccccCCCCC-CCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 136 NVGIQDFKPEDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 136 ~~d~~~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
++++.+...... ....++|+++.+.-. +++..=++++..-+++|..++-.....
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccc
Confidence 666654432111 124688887765321 333445558888889998888754433
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.70 E-value=0.73 Score=37.86 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc-----CCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-----KPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~-----~~~~~~~~~ 151 (256)
...++.+||..|+| .|..+..++.....+|++++.++...+.+++. + +..+....-... .... +.+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g--~~~~~~~~~~~~~~~~~~~~~--~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G--ADEVLNSLDDSPKDKKAAGLG--GGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C--CCEEEcCCCcCHHHHHHHhcC--CCc
Confidence 46677899888876 36777777665333799999999887777542 1 101111110000 1112 368
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+..... ...++.+.+.|+++|.++..
T Consensus 234 D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 998864221 24677788999999999875
No 326
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.33 E-value=0.38 Score=42.06 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---------------C
Q psy8370 80 PGKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---------------K 143 (256)
Q Consensus 80 ~~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---------------~ 143 (256)
.++.+|+-+|+|.- ..+..++......|+++|.++.-.+.++.. + . .++..+..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G--a-~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G--A-EFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C--C-eEEeccccccccccccceeecCHHHH
Confidence 45789999999854 555555444333799999999877766652 1 1 2222222110 0
Q ss_pred ------CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 144 ------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 144 ------~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
..+.-..+|+|+....+..-+.+ .-+.+++.+.+|||+.++-
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 00001358999887654443212 2366778899999998774
No 327
>KOG2352|consensus
Probab=92.95 E-value=0.23 Score=42.45 Aligned_cols=109 Identities=21% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccc----cccCCC-CCCCcee
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGI----QDFKPE-DLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~----~~~~~~-~~~~~~D 152 (256)
.....+|-+|-|.|.+...+-.... ..+++|+++|+|++.+...+.-.. .+. .++-.|- .+.... .+...||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~-~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRN-KVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhh-hhhHhhchHHHHHHhhccccccCCc
Confidence 4457788899999998887744333 499999999999999999875322 122 2222222 111111 1124799
Q ss_pred EEEech-h--hhcc--CHHH--HHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQW-V--LMFI--LDED--IIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~-~--l~~~--~~~~--~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
++.... . -|.+ |+.. ...++..+..+|.|.|.+++--
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 988541 1 2222 2222 3458999999999999998853
No 328
>KOG2671|consensus
Probab=92.74 E-value=0.2 Score=40.88 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHH-------HHHHHHHhcC--CCcceEEEccccccCCCCC
Q psy8370 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE-------QAKEEILKDC--DKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~--~~i~~~~~~d~~~~~~~~~ 147 (256)
....+++-|.|--.|||.+....+.-|. -|+|.||+-.++. ..+.+++..+ ...-.+..+|....+.-..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4467889999999999999999877676 8999999977765 2445565544 2222567777776654332
Q ss_pred CCceeEEEech------------------------hhhccCH-------HHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 148 NIKYDVIWIQW------------------------VLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 148 ~~~~D~V~~~~------------------------~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
..||.|+|.= ...|.|. +-...+|.-.++.|..||.+++-.+..
T Consensus 283 -~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 283 -LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred -ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 4799999760 0112211 124456777899999999999865533
No 329
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.36 E-value=1.1 Score=33.61 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHh----cC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-----CC
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-----NI 149 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-----~~ 149 (256)
.++..|+|+|.-.|..+.+.+.. |. .+|.++|++-..++.+... ..++ .++.++-.+..-... .+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i-~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDI-LFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCe-EEEeCCCCCHHHHHHHHHHhcC
Confidence 45789999999999877776543 42 2899999985544333221 1466 888888665432110 11
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCC
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 194 (256)
.--+.++-.+-|+. +...+-++...+.|.-|-++++.+..-..
T Consensus 143 y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 143 YPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 22444555555655 55567788888899999999987655444
No 330
>KOG1099|consensus
Probab=92.19 E-value=0.51 Score=36.42 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhcCC----------eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC----
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKHFD----------KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---- 145 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~~~----------~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~---- 145 (256)
..-.+++|+.+-.|.++..|.++.+. .+++||+.+-+ .. ..+ .-+++|+......
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI-~GV-~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI-EGV-IQLQGDITSASTAEAII 108 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc-Cce-EEeecccCCHhHHHHHH
Confidence 34578999999999999988765431 38999986521 11 123 4556666554211
Q ss_pred --CCCCceeEEEechh-----hhccCH----HHHHHHHHHHhhhcCCCcEEEE
Q psy8370 146 --DLNIKYDVIWIQWV-----LMFILD----EDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 146 --~~~~~~D~V~~~~~-----l~~~~~----~~~~~~l~~~~~~LkpgG~l~i 187 (256)
.+..+.|+|+|... +|.+.. +-+...|.-...+|+|||.|+-
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 11236899998743 454422 2345566677889999999986
No 331
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.82 E-value=2.7 Score=34.88 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++..|+.+...... .+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~-~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEA-LAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcE-EEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888865553 4455566677 89999998877776666655444455 677888766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.66 E-value=1.5 Score=36.37 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=56.1
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
..++.+||-+||| .|.++..++++ +..+|+++|.++.-++.+++ .+ . .... .++. ... .+|+|+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~--~-~~~~---~~~~-~~~--g~d~vi 227 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD--E-TYLI---DDIP-EDL--AVDHAF 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC--c-eeeh---hhhh-hcc--CCcEEE
Confidence 4568899999986 34444555543 34589999999887777654 11 1 1111 1111 111 488888
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-...-. .....++...+.|+++|.+++.-
T Consensus 228 D~~G~~-----~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGGR-----GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCCC-----ccHHHHHHHHHhCcCCcEEEEEe
Confidence 643211 01246777888999999998764
No 333
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.65 E-value=2.5 Score=32.75 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
++++||-.|++.|. ++..+++.|+ +|++++-+++..+...+.....+ ++ .++.+|+.+...... .+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG-NI-HYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-Ce-EEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35688988876442 3444555666 89999998876655544443322 45 677788765431100 12
Q ss_pred ceeEEEechhhhcc-CHH--------------HHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 150 KYDVIWIQWVLMFI-LDE--------------DIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 150 ~~D~V~~~~~l~~~-~~~--------------~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.+|.++........ +.. ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765432110 001 112345666667777887777643
No 334
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.59 E-value=3.7 Score=32.50 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|-.|+++ | ..+..+++.|+ +|+.++.++...+...+.....+ .. .++..|+.+..... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD-AP-IFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc-cc-eEEecCcCCHHHHHHHHHHHHHH
Confidence 467888889764 3 25555666676 78888887654333333222211 23 45667766542111 0
Q ss_pred CCceeEEEechhhhc----------cCHHHHHHH-----------HHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLMF----------ILDEDIIKF-----------LNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+..... .+.+++.+. .+.+.+.|+.+|.++..
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 146899988754321 222333333 35566677777877664
No 335
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.41 E-value=1.9 Score=34.74 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=50.9
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|.=||+|. |.++..+...|. +|+++|.+++..+.+.+. + .+ .....+.. . .. ..|+|+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g-~~-~~~~~~~~-~---~~--~aDlVilav--- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----G-LV-DEASTDLS-L---LK--DCDLVILAL--- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----C-Cc-ccccCCHh-H---hc--CCCEEEEcC---
Confidence 466678774 456666656666 899999998877766542 1 11 11111111 1 12 479888763
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
|.....+.++++...++++..+.
T Consensus 66 --p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 66 --PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred --CHHHHHHHHHHHHHhCCCCcEEE
Confidence 33444567788888888765443
No 336
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.38 E-value=2.4 Score=34.32 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS-KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|-.|++.|. ++..++++|+ +|+.++.++ ...+.....+...+.++ .++..|+.+...... .
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKC-LLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 35688888876553 4555556676 788887764 22333333343333345 677888765432110 1
Q ss_pred CceeEEEechhhh-------ccCHH-----------HHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM-------FILDE-----------DIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~-------~~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+.+|+|+.+.... ..+.+ ....+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3578888654321 11111 23345556666677777777653
No 337
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.35 E-value=4 Score=32.03 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|+.++.++..++...+.+...+.++ .++..|+.+..... ..+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKA-HAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeE-EEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45678888866552 4555556676 89999988776665555554433344 56777776543110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 86 ~id~vi~~ag 95 (254)
T PRK08085 86 PIDVLINNAG 95 (254)
T ss_pred CCCEEEECCC
Confidence 6899998754
No 338
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.27 E-value=1.2 Score=30.40 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCCHhHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEechhhhccC
Q psy8370 90 AGIGRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQWVLMFIL 164 (256)
Q Consensus 90 ~G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~~~l~~~~ 164 (256)
||.|..+..+++. +...|+.+|.+++..+.+++. .+ .++.+|..+.... .+-..+|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------~~-~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------GV-EVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------TS-EEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------cc-ccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 5667777766553 233899999999987777654 24 7888888765321 11136787777532
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEE
Q psy8370 165 DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 225 (256)
Q Consensus 165 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~ 225 (256)
++.....+-...+.+.|...++..- ...+..+.+++.|...+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~-------------------~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARV-------------------NDPENAELLRQAGADHV 113 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEE-------------------SSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEE-------------------CCHHHHHHHHHCCcCEE
Confidence 2333334445567777887777641 12344667777876554
No 339
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.27 E-value=4.1 Score=33.46 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCC-CHhH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-GRIS-KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+-+|+|. |... ..+...+...|+.++.+++-.+...+.+ + . .... +.+....-. .+|+|++.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---g--~-~~~~--~~~~~~~l~--~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---G--G-NAVP--LDELLELLN--EADVVISA 245 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---C--C-eEEe--HHHHHHHHh--cCCEEEEC
Confidence 4688999999863 3322 3333335668999999876443332222 1 1 1121 111111112 57999987
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHh
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
-.-.+. ...++.+.+....++.+++--.....-............++.+++..+.++
T Consensus 246 t~~~~~-----~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 246 TGAPHY-----AKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred CCCCch-----HHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 543222 123333333232245555532222222222223344556788888877664
No 340
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.14 E-value=2.9 Score=33.18 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. ++..++.+|+ .|++++.++.-++...+.+...+.++ .++..|+.+...... .+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEG-LGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCce-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888864432 4444555666 79999988776555544444333344 667778765321100 13
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988653
No 341
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.94 E-value=0.81 Score=37.08 Aligned_cols=102 Identities=9% Similarity=0.045 Sum_probs=66.1
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..++.+|.-||.|. |..+..++......|+.+|.|..-+......+. .++ ..+..+..++...-. ..|+|+..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---~rv-~~~~st~~~iee~v~--~aDlvIga 238 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---GRV-HTLYSTPSNIEEAVK--KADLVIGA 238 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---cee-EEEEcCHHHHHHHhh--hccEEEEE
Confidence 34567888899884 566666655444499999999776665555543 345 555555555443333 68999876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
-.+--- ....-..+++.+.||||+.++=+
T Consensus 239 VLIpga--kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGA--KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCC--CCceehhHHHHHhcCCCcEEEEE
Confidence 554333 22234677888999999988754
No 342
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.84 E-value=0.64 Score=32.38 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc---C-CCCCCCceeEEEechhhhccCHH
Q psy8370 91 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---K-PEDLNIKYDVIWIQWVLMFILDE 166 (256)
Q Consensus 91 G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~---~-~~~~~~~~D~V~~~~~l~~~~~~ 166 (256)
|.|..+..+++....+|+++|.++.-.+.+++.- ...+...+-.++ . .......+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc------ccccccccccccccccccccccccceEEEEecC-------
Confidence 3577777777654469999999998888877542 112222221111 0 0011126999987633
Q ss_pred HHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 167 DIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 167 ~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
-...++....+++|+|.+++.....
T Consensus 68 -~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1257788889999999999975443
No 343
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.75 E-value=0.61 Score=32.41 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCC-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechh
Q psy8370 81 GKTRVLDVGAGIG-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 159 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~ 159 (256)
...+|+|+|-|.= ..+..|.+.|+ .|+++|+.+. .+ . ..+ .++..|+.+....-- ...|+|++..-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a----~---~g~-~~v~DDif~P~l~iY-~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KA----P---EGV-NFVVDDIFNPNLEIY-EGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------ST-TEE---SSS--HHHH-TTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---cc----c---cCc-ceeeecccCCCHHHh-cCCcEEEEeCC
Confidence 4459999999965 46677777787 8999999987 11 1 245 789999987543211 14899998643
Q ss_pred hhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 160 LMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 160 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
- .+++..+.++++.+ |.-+++.
T Consensus 80 P-----~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 80 P-----PELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp ------TTSHHHHHHHHHHH--T-EEEEE
T ss_pred C-----hHHhHHHHHHHHHh--CCCEEEE
Confidence 2 33345555555543 4566665
No 344
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.41 E-value=2 Score=33.74 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-c-CCCCCCCceeEEE
Q psy8370 79 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-F-KPEDLNIKYDVIW 155 (256)
Q Consensus 79 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~-~~~~~~~~~D~V~ 155 (256)
..++.+||..|+|. |..+..++.....++++++.++...+.+++.-. ..+......+... . .... +.+|+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~--~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---DHVIDYKEEDLEEELRLTGG--GGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---ceeccCCcCCHHHHHHHhcC--CCCCEEE
Confidence 36788999999985 666666655443589999999877766644310 0000101001100 0 0111 3699998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....-. ..+..+.+.|+++|.++...
T Consensus 207 ~~~~~~--------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 207 DAVGGP--------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred ECCCCH--------HHHHHHHHhcccCCEEEEEc
Confidence 753210 34566778889999998753
No 345
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.36 E-value=1.7 Score=35.52 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=52.5
Q ss_pred CCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+||=+||| .|.++..+++. |+..|.++|.++.-++.+... ..+ |..+. .. ..+|+|+-..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~~i--~~~~~--~~--~g~Dvvid~~ 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------EVL--DPEKD--PR--RDYRAIYDAS 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------ccc--Chhhc--cC--CCCCEEEECC
Confidence 46788888875 45566666544 565677888887665554321 111 11110 11 2589988653
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.- ...++.+.+.|+++|.+++.-
T Consensus 209 G~--------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 209 GD--------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CC--------HHHHHHHHHhhhcCcEEEEEe
Confidence 31 235667788999999999764
No 346
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.30 E-value=5.1 Score=31.98 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. ++..+++.|+ +|+.++.+++..+...+.+...+.++ .++..|+.+...... -+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEA-LAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45778878876553 4455556677 89999988776665555554433345 677888765431110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6899987643
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.22 E-value=1.4 Score=36.74 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeC---CHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQ---SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~ 153 (256)
..++.+||-+|+| .|.++..+++. |. +|++++. ++.-.+.+++. +.........+..+ .... +.+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~----Ga~~v~~~~~~~~~-~~~~--~~~d~ 241 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL----GATYVNSSKTPVAE-VKLV--GEFDL 241 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc----CCEEecCCccchhh-hhhc--CCCCE
Confidence 3567899989886 34555555554 45 7999986 56655555432 21100111111111 0111 25898
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
|+-...- ...+....+.|+++|.+++...
T Consensus 242 vid~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 242 IIEATGV--------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEECcCC--------HHHHHHHHHHccCCcEEEEEec
Confidence 8876431 1356778889999999987643
No 348
>PRK09242 tropinone reductase; Provisional
Probab=90.12 E-value=6 Score=31.12 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPE--------DL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~--------~~ 147 (256)
.++++|-.|++.|. ++..++++|+ +|+.++.+++..+...+.+... +.++ .++.+|+.+.... ..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREV-HGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 4555556676 8999998877666655555432 2345 6677787653210 00
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 86 ~g~id~li~~ag 97 (257)
T PRK09242 86 WDGLHILVNNAG 97 (257)
T ss_pred cCCCCEEEECCC
Confidence 136899887654
No 349
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.10 E-value=4.5 Score=33.41 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
....++.+||-.|+| .|..+..+++. |. ++++++.+++-.+.+++. +.. ..+ +..+. ... .+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~----Ga~--~vi--~~~~~--~~~--~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALAL----GAA--SAG--GAYDT--PPE--PLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHh----CCc--eec--ccccc--Ccc--cceEE
Confidence 356778899999975 33444555444 44 799999998877766553 211 111 11111 112 47876
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+..... ...+....+.|+++|.+++...
T Consensus 228 i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 543221 1357778889999999988643
No 350
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.10 E-value=4.4 Score=31.58 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCHhH----HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGRIS----KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~----~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++ |..+ ..++++|+ ++++++.++...+...+.+...+.++ .++..|+.+...... .
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRA-HAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 45778877754 4433 34445566 78888888776665555554433455 778888865432100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 36899887643
No 351
>PRK07985 oxidoreductase; Provisional
Probab=89.93 E-value=5.4 Score=32.34 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS--KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.+. ...+...+.....+.++ .++..|+.+..... .
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKA-VLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeE-EEEEccCCCHHHHHHHHHHHHHH
Confidence 45789988876553 5566666777 787776542 33333444333333345 66778876542110 0
Q ss_pred CCceeEEEechhh-------hccCHHHH-----------HHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVL-------MFILDEDI-----------IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l-------~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+... ...+.+++ ..+++.+.+.++.+|.+++.
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 1357888876432 12222222 23555666667778877765
No 352
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=89.78 E-value=7.6 Score=29.83 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEcCCCCH----hHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEccc
Q psy8370 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIGR----ISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 139 (256)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~i~~~~~~d~ 139 (256)
.+|+..+- .....+.+++..|+.|. ++...+++. ..+++.|-++++.+...++.+...+. +..+|+.++.
T Consensus 30 aEfISAlA----AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 30 AEFISALA----AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHh----ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 45565555 56667888999766442 333333332 23899999998888778877775542 2227777764
Q ss_pred -cccCCCCCCCceeEEEechhhhccCHHHHH-HHHHHHhhhcCCCcEEEEEecccC
Q psy8370 140 -QDFKPEDLNIKYDVIWIQWVLMFILDEDII-KFLNLCKQILNKNGIIIIKDNVAS 193 (256)
Q Consensus 140 -~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~ 193 (256)
++..+.-. .+|+++...-. .+.. .+|+.+. +.|.|.+++..+...
T Consensus 106 ~e~~~~~~~--~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 106 PEEVMPGLK--GIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHHhhcc--CCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 44443333 58988876432 2323 4554432 567788888755443
No 353
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.67 E-value=3.3 Score=34.30 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++..|+.+...... .+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEV-LVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45788888876553 5555666777 79999999887776666665544445 566777765421110 14
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 354
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.63 E-value=3.3 Score=33.86 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=51.0
Q ss_pred CCeEEEEcCCC--CHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 82 KTRVLDVGAGI--GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
..+|.=||+|. +.++..+...+. .+|+++|.+++..+.+++ .+. . .....+..+. .. ..|+|+...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~-~-~~~~~~~~~~---~~--~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL-G-DRVTTSAAEA---VK--GADLVILCV 74 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC-C-ceecCCHHHH---hc--CCCEEEECC
Confidence 35788899885 234455555554 379999999887665543 111 1 1111122111 12 478888764
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
-. .....+++.+...+++++.++.
T Consensus 75 p~-----~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PV-----GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CH-----HHHHHHHHHHHhhCCCCCEEEe
Confidence 32 2334566677777788775554
No 355
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.36 E-value=5.1 Score=31.70 Aligned_cols=74 Identities=8% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.| .++..+++.|+ +|+.++.++...+...+.. +.++ .++.+|+.+...... .+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERA-RFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCee-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568888886554 25555666677 8999998876544443332 2345 677788765432100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887643
No 356
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.34 E-value=1.3 Score=36.53 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc---ccccCCCCCCCceeEEE
Q psy8370 81 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 81 ~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d---~~~~~~~~~~~~~D~V~ 155 (256)
++.+||-.|+|. |..+..++.. |...+++++.++...+.+++. . .. .++..+ +....... +.+|+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g-~~----~vi~~~~~~~~~~~~~~--~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G-AD----ETVNLARDPLAAYAADK--GDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C-CC----EEEcCCchhhhhhhccC--CCccEEE
Confidence 678898888764 5566666554 444789999988877755542 1 11 222111 11221111 2589998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..... ...++.+.+.|+++|.++..
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 75321 13566778999999999875
No 357
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.19 E-value=6.1 Score=32.18 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=50.2
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|. +.++..+++.+. +|++.|.+++..+.+.+. + . . ...+..+...... ..|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~----g--~-~-~~~s~~~~~~~~~--~~dvIi~~---- 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED----R--T-T-GVANLRELSQRLS--APRVVWVM---- 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc----C--C-c-ccCCHHHHHhhcC--CCCEEEEE----
Confidence 456678774 235555656666 899999998876655532 1 1 1 1123222221112 46888876
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
+++.....+++.+...|++|-.++
T Consensus 67 -vp~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 67 -VPHGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred -cCchHHHHHHHHHHhhCCCCCEEE
Confidence 333344567788888888875443
No 358
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.97 E-value=1.5 Score=35.24 Aligned_cols=98 Identities=18% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccc-cCCCCCCCceeEE
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQD-FKPEDLNIKYDVI 154 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~-~~~~~~~~~~D~V 154 (256)
..++.+||-+|+| .|..+..+++. |...|+++|.++.-.+.+++. +.. .++. .+..+ .........+|+|
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCchhhHHHHHHHhCCCCCCEE
Confidence 4467899988875 33444444443 554589999988877766553 110 1111 11100 0000011248988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
+-... . ...++.+.+.++++|.+++.-.
T Consensus 192 id~~G------~--~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 192 LEFSG------A--TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EECCC------C--hHHHHHHHHHhcCCCEEEEecc
Confidence 86432 0 2356677889999999998643
No 359
>PRK11524 putative methyltransferase; Provisional
Probab=88.94 E-value=0.68 Score=37.44 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=35.4
Q ss_pred eEEEccccccCCCCCCCceeEEEec--hhh--h------ccCH----HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 133 KCYNVGIQDFKPEDLNIKYDVIWIQ--WVL--M------FILD----EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 133 ~~~~~d~~~~~~~~~~~~~D~V~~~--~~l--~------~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.++++|..+....-..+++|+|+++ +.. . .... +-+...+.++.++|||||.+++.
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6777887765321112379999985 211 0 0000 22357889999999999999985
No 360
>KOG1253|consensus
Probab=88.74 E-value=0.24 Score=42.41 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCCHhHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEccccccCC--CCCCCceeEE
Q psy8370 80 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP--EDLNIKYDVI 154 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~i~~~~~~d~~~~~~--~~~~~~~D~V 154 (256)
.++-+|||.=|++|.-++..+... ..+|++.|.++..++..+.+.+..+ .++.+....|+...-. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 456789999999998888776653 4489999999999999999887654 2222555666543321 1112378988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
-..-. .....+|..+.+.++.||.+.++.
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEEe
Confidence 65421 222357888888899999999973
No 361
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.67 E-value=3.6 Score=32.75 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHH
Q psy8370 96 SKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNL 174 (256)
Q Consensus 96 ~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~ 174 (256)
+..|.+.++. +|+|+|.++..++.+.+. .+..-...+.... . .+|+|+... |......++++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~------g~~~~~~~~~~~~----~--~~Dlvvlav-----P~~~~~~~l~~ 64 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL------GIIDEASTDIEAV----E--DADLVVLAV-----PVSAIEDVLEE 64 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT------TSSSEEESHHHHG----G--CCSEEEE-S------HHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC------CCeeeccCCHhHh----c--CCCEEEEcC-----CHHHHHHHHHH
Confidence 4566666743 999999999988877643 1212222221111 1 479998763 33445667777
Q ss_pred HhhhcCCCcEEEEE
Q psy8370 175 CKQILNKNGIIIIK 188 (256)
Q Consensus 175 ~~~~LkpgG~l~i~ 188 (256)
+...+++|+.+.=.
T Consensus 65 ~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 65 IAPYLKPGAIVTDV 78 (258)
T ss_dssp HHCGS-TTSEEEE-
T ss_pred hhhhcCCCcEEEEe
Confidence 77777777655543
No 362
>PRK12937 short chain dehydrogenase; Provisional
Probab=88.62 E-value=7.7 Score=30.11 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|++.|. ++..++++|+ +++.+.-+ +...+...+.....+.++ .++..|+.+...... .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRA-IAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678888875442 4455555676 56655433 333333333333333455 677778765421100 1
Q ss_pred CceeEEEechhhh------ccCHHHH-----------HHHHHHHhhhcCCCcEEEEEe
Q psy8370 149 IKYDVIWIQWVLM------FILDEDI-----------IKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~------~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+..|+++.+.... ..+.++. ..+++.+.+.++++|.++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 3578888764321 1222222 234556666777778777763
No 363
>PRK07814 short chain dehydrogenase; Provisional
Probab=88.58 E-value=5.1 Score=31.71 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=.|++.| .++..++.+|+ +|++++.++...+...+.+...+.++ .++..|+.+...... -+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRA-HVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888886544 24455556677 89999998876665555554433455 677788766532110 13
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+|+.+.
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 689998764
No 364
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.52 E-value=15 Score=31.48 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEcCC-CCHh-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAG-IGRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~-~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
..-.+.+||=||.| .|.+ +.+|+..|...++.+--.. +.|++.....+ .....+.++...-. .+|+|+
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~---erA~~La~~~~-----~~~~~l~el~~~l~--~~DvVi 243 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL---ERAEELAKKLG-----AEAVALEELLEALA--EADVVI 243 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH---HHHHHHHHHhC-----CeeecHHHHHHhhh--hCCEEE
Confidence 33478899999999 6654 4566677777787775553 33443333322 12223333333333 689999
Q ss_pred echh-hhcc-CHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCc-cccCCCCceeeCHHHHHHHHHh
Q psy8370 156 IQWV-LMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYDDEDSSVVRSLPQFCLLFSK 219 (256)
Q Consensus 156 ~~~~-l~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 219 (256)
++-. -+++ +.... .+.+++.-.+++.|..-+.... ........+.++.+++....+.
T Consensus 244 ssTsa~~~ii~~~~v-------e~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~ 303 (414)
T COG0373 244 SSTSAPHPIITREMV-------ERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEE 303 (414)
T ss_pred EecCCCccccCHHHH-------HHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHH
Confidence 8743 3433 22322 2233222115555544433322 2333445566777777665443
No 365
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.51 E-value=8.1 Score=30.10 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS-KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LN 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~ 148 (256)
.++++|-.|++.|. ++..++++|+ +|+++.-+. ...+.....+...+.++ .++..|+.+..... ..
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRA-SAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688888864442 4444555666 788876653 23333333333333345 66777876543210 01
Q ss_pred CceeEEEechhhhc-----------cCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMF-----------ILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+.+|+|+.+..... .+-.....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 25788776543211 01112345777777777666776665
No 366
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=88.30 E-value=3 Score=27.56 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=46.8
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCC----------ccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK----------NEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.+++-|.+.++..+.+..+....+ |.++++-....... +..+.....+...++++.+.+.++||++.+
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r 79 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGR 79 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeee
Confidence 456667777888889988887644 56666532222110 112222334557899999999999999987
Q ss_pred eeee
Q psy8370 227 SEKV 230 (256)
Q Consensus 227 ~~~~ 230 (256)
.+..
T Consensus 80 ~~ri 83 (97)
T PF07109_consen 80 TERI 83 (97)
T ss_pred cccc
Confidence 6644
No 367
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.26 E-value=1.7 Score=36.63 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI 124 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~ 124 (256)
++.++.+||-|.+|....... +..++++|++||+|+.-....+-+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 578899999998776666665 4677789999999998766655444
No 368
>PRK06128 oxidoreductase; Provisional
Probab=88.08 E-value=9.5 Score=30.94 Aligned_cols=106 Identities=14% Similarity=-0.039 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHH--HHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSK--FIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++.|. ++..+++.|+ +|+.+..+.. ..+...+.+...+.++ .++.+|+.+..... .
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKA-VALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeE-EEEecCCCCHHHHHHHHHHHHHH
Confidence 35688888865552 4555556676 6776665432 2233333333333345 66778876542110 0
Q ss_pred CCceeEEEechhhh-------ccCHHH-----------HHHHHHHHhhhcCCCcEEEEE
Q psy8370 148 NIKYDVIWIQWVLM-------FILDED-----------IIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 148 ~~~~D~V~~~~~l~-------~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+..|+++.+.... .++.++ ...+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 13689998775432 112222 223556667777788887775
No 369
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.06 E-value=4 Score=34.02 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc----cccccCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV----GIQDFKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~----d~~~~~~~~~~~~~ 151 (256)
...++.+||=.|+ |.|..+..+++....++++++.++.-.+.+++.+.. . .++.. ++.+.......+.+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~--~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---D--EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---C--EEEECCCcccHHHHHHHHCCCCc
Confidence 4577889998987 367777777665333799999888776666533221 1 22211 11111000001258
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
|+|+.... ...+..+.+.|+++|.+++.-
T Consensus 230 D~v~d~vG---------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG---------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC---------HHHHHHHHHHhccCCEEEEEC
Confidence 99886532 135567788999999998753
No 370
>PRK08324 short chain dehydrogenase; Validated
Probab=87.99 E-value=3.9 Score=37.58 Aligned_cols=106 Identities=19% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||-.|++.| .++..+++.|+ +|+++|.++...+.+...+... ..+ .++..|+.+...... .+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-~~v-~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-DRA-LGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-CcE-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578888876444 24444555676 8999999987766655544332 244 677778765421100 13
Q ss_pred ceeEEEechhhhc------cCHHH-----------HHHHHHHHhhhcCC---CcEEEEEe
Q psy8370 150 KYDVIWIQWVLMF------ILDED-----------IIKFLNLCKQILNK---NGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~~------~~~~~-----------~~~~l~~~~~~Lkp---gG~l~i~~ 189 (256)
.+|+|+.+..... .+.+. ...+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899987754221 11111 23456666777765 57777753
No 371
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.89 E-value=3.5 Score=35.31 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-GRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+-+|+|. |......+. .|. +|+++|.++.-.+.|+.. + . .. .+..+.. . .+|+|+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G--~-~~--~~~~e~v---~--~aDVVI~a 264 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G--Y-EV--MTMEEAV---K--EGDIFVTT 264 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C--C-EE--ccHHHHH---c--CCCEEEEC
Confidence 5688999999995 433333333 355 899999998766655432 2 1 11 1222211 2 47999875
Q ss_pred hhhhccCHHHHHHHHHH-HhhhcCCCcEEEEEe
Q psy8370 158 WVLMFILDEDIIKFLNL-CKQILNKNGIIIIKD 189 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 189 (256)
..- ...+.. ..+.+++||.++..-
T Consensus 265 tG~--------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 265 TGN--------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCC--------HHHHHHHHHhcCCCCcEEEEeC
Confidence 321 124443 478899999998763
No 372
>PRK05872 short chain dehydrogenase; Provisional
Probab=87.80 E-value=7.4 Score=31.53 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.+++.++...+.+.. +..+ ..+..|+.+..... ..+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRV-LTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcE-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888876652 5555656676 899999988766655444432 1233 34457776542110 013
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999987543
No 373
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.54 E-value=11 Score=30.85 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc----cccccCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV----GIQDFKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~----d~~~~~~~~~~~~ 150 (256)
....++.+||=.|+ |.|..+..+++....++++++.+++-.+.+++. +.. .++.. +..+.......+.
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFD--VAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeccccccHHHHHHHhCCCC
Confidence 35677889998884 467777777665433899999888877766542 211 22211 1111100001125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+.... . ..+....+.|+++|.++...
T Consensus 208 vdvv~d~~G------~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNVG------G---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECCC------H---HHHHHHHHHhCcCcEEEEec
Confidence 899886432 1 23466788999999999753
No 374
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.26 E-value=8.9 Score=31.08 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCc---------ceE-EEccccccCC
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKL---------DKC-YNVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i---------~~~-~~~d~~~~~~ 144 (256)
.+|--||+|+ +..+..++..|+ +|+.+|.+++.++.+.+++...- ..+ ..+ ...|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh--
Confidence 4788899984 345555666677 89999999999988776643210 001 000 12222111
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhc-CCCcEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIII 187 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~i 187 (256)
...|+|+-. +.+.+ +-...++..+-+.+ +|+..+.-
T Consensus 83 ----~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ----CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 146888765 22333 44456788888888 66655554
No 375
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.21 E-value=5.5 Score=32.16 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=51.0
Q ss_pred CCeEEEEcCC--CCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccccCCCCCCCceeEEEec
Q psy8370 82 KTRVLDVGAG--IGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G--~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+|+=+|.| -|.+++.+.+.|.. .+++.|.+....+.+.+. .+ .... .+.... .. ...|+|+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l------gv-~d~~~~~~~~~--~~--~~aD~Viva 71 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL------GV-IDELTVAGLAE--AA--AEADLVIVA 71 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc------Cc-ccccccchhhh--hc--ccCCEEEEe
Confidence 3567777766 45566767666765 578888888766665532 11 1111 111011 11 247988876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
-- -.....+++++...|++|..+.
T Consensus 72 vP-----i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 72 VP-----IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cc-----HHHHHHHHHHhcccCCCCCEEE
Confidence 32 2344567777777777765544
No 376
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=87.18 E-value=1.8 Score=34.80 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=61.0
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 110 vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
....++..|.++.+.. ++ .++.+|+.++......+..|.++..++-.++++.++..++.++.+-+.+|..+++..
T Consensus 292 ~yl~~~~YEsir~n~~----RV-~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 292 AYLDEGVYESIRQNLR----RV-AIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhhchhhHHHHHhhhh----he-eeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 4556666677766654 46 789999988876433458999999999999999999999999999999999999853
No 377
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.17 E-value=3.3 Score=34.26 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCC-CCCCCceeE
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 153 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D~ 153 (256)
....++.+||-.|+ |.|.++..+++.....++++--+++-.+.+++.-.+ .+..+...|+.+... ......+|+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---HVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---EEEcCCcccHHHHHHHHcCCCCceE
Confidence 35677899999985 456788888776432666766666555544443221 121333333332221 111125999
Q ss_pred EEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEeccc
Q psy8370 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192 (256)
Q Consensus 154 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 192 (256)
|+....- ..+....+.|+++|.++......
T Consensus 215 v~D~vG~---------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 215 VLDTVGG---------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EEECCCH---------HHHHHHHHHhccCCEEEEEecCC
Confidence 9987442 35555778889999999865443
No 378
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.90 E-value=11 Score=29.69 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCC----HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC------
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQS----SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------ 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s----~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~------ 147 (256)
.++++|=.|++.| .++..++..|+ +++.++.+ ....+...+.+...+.++ .++..|+.+......
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKA-VAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcE-EEEecCcCCHHHHHHHHHHHH
Confidence 3568888886655 24455555666 55555432 222333333333223345 677888765432110
Q ss_pred --CCceeEEEechhh------hccCHHHH-----------HHHHHHHhhhcCCCcEEEE
Q psy8370 148 --NIKYDVIWIQWVL------MFILDEDI-----------IKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 148 --~~~~D~V~~~~~l------~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i 187 (256)
.+.+|+++.+... ...+.++. ..+++.+.+.++++|.+++
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 1368999877543 22222222 2345666777777776654
No 379
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.62 E-value=7.3 Score=32.53 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~-~~~~~~~~~ 150 (256)
....++.+||-.|+|. |..+..+++. |...|+++|.++.-.+.+++. +.. .++. .+..+ .........
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT--HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEEcCCCcCHHHHHHHHhCCCC
Confidence 3456788999888752 4455555544 444699999998877777542 110 2221 11111 000011124
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+-...- ...++...+.++++|.+++..
T Consensus 246 ~d~vid~~g~--------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVGR--------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 8988864321 134566778899999998764
No 380
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.61 E-value=3.4 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
...++....|+|+..|.++..|.+++- .|++||..+- +... -+. ..+ +....|-..+.|... ..|-.+|.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m----a~sL-~dt-g~v-~h~r~DGfk~~P~r~--~idWmVCD 277 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM----AQSL-MDT-GQV-THLREDGFKFRPTRS--NIDWMVCD 277 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchh----hhhh-hcc-cce-eeeeccCcccccCCC--CCceEEee
Confidence 357789999999999999999998887 8999998653 2222 222 355 666667666666444 68988887
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
.+
T Consensus 278 mV 279 (358)
T COG2933 278 MV 279 (358)
T ss_pred hh
Confidence 66
No 381
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=86.52 E-value=14 Score=29.08 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..|+++|+ +|+.++.++.. +...+.+...+.++ .++..|+.+..... ..+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~-~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV-HEVAAELRAAGGEA-LALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH-HHHHHHHHhcCCeE-EEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45678888876552 5555666777 79999987643 22333333333345 56777876642110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 6899887653
No 382
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.42 E-value=13 Score=29.60 Aligned_cols=77 Identities=17% Similarity=0.037 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
+++++|-.|++. | ..+..|++.|+ +|+.++.++...+..++.....+ .. ..+..|+.+..... .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-SD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-Cc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888864 4 36666767777 78888776543333333322222 22 35677876543211 0
Q ss_pred CCceeEEEechhh
Q psy8370 148 NIKYDVIWIQWVL 160 (256)
Q Consensus 148 ~~~~D~V~~~~~l 160 (256)
.+.+|+++.+...
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2478999887543
No 383
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.25 E-value=1.8 Score=36.32 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=56.6
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---ccccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---VGIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~d~~~-~~~~~~~~~ 150 (256)
....++.+||=.|+| .|..+..++.. |...|+++|.++.-.+.+++. +.. .++. .+..+ ...... +.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~~~-~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT--ATVNAGDPNAVEQVRELTG-GG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc--eEeCCCchhHHHHHHHHhC-CC
Confidence 345677888888875 24445555443 554699999999877777542 111 1221 11111 100011 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+|+-...- ...++...+.++++|.+++..
T Consensus 260 ~d~vid~~G~--------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAGS--------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCCC--------hHHHHHHHHHHhcCCEEEEEc
Confidence 8988864220 135666778899999998764
No 384
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.12 E-value=15 Score=29.20 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++. | ..+..+++.|+ +|+.++.++...+.+.+. ....... .++..|+.+..... .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~-~~~~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEF-AAQLGSD-IVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHH-HhccCCc-eEeecCCCCHHHHHHHHHHHHhh
Confidence 456788888864 3 25666777777 788887764332333322 2211233 46677876542111 0
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 82 ~g~iD~linnAg 93 (262)
T PRK07984 82 WPKFDGFVHSIG 93 (262)
T ss_pred cCCCCEEEECCc
Confidence 246899998764
No 385
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.01 E-value=3.4 Score=29.23 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=45.8
Q ss_pred CCCCCeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.-++.++|=||+|.- ..+..+...|+.+++.+.-+.+-.+...+.+.. . .+...++.+...... .+|+|++
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~--~---~~~~~~~~~~~~~~~--~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG--V---NIEAIPLEDLEEALQ--EADIVIN 81 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG--C---SEEEEEGGGHCHHHH--TESEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc--c---ccceeeHHHHHHHHh--hCCeEEE
Confidence 456899999999743 244555566887899999887655544444421 1 233444444442223 6999998
Q ss_pred chhh
Q psy8370 157 QWVL 160 (256)
Q Consensus 157 ~~~l 160 (256)
.-..
T Consensus 82 aT~~ 85 (135)
T PF01488_consen 82 ATPS 85 (135)
T ss_dssp -SST
T ss_pred ecCC
Confidence 7543
No 386
>KOG2912|consensus
Probab=85.92 E-value=2.7 Score=34.28 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=52.5
Q ss_pred hHHHHHHHHhccCCCCCCCe--EEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccc
Q psy8370 65 SNQFLSSLYCQKKSDPGKTR--VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGI 139 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~--vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~ 139 (256)
..+++..++... +..++.. -+|||.|+-..-..+-++... ...++|+++...+.|.++....+ ..+ .+++...
T Consensus 85 YihwI~DLLss~-q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~i-kvV~~~~ 162 (419)
T KOG2912|consen 85 YIHWIEDLLSSQ-QSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLI-KVVKVEP 162 (419)
T ss_pred hHHHHHHHhhcc-cCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccce-eeEEecc
Confidence 346777777222 2222222 479988876554444333222 67889999999999999887654 334 4444433
Q ss_pred cccCC-----CCCCCceeEEEec
Q psy8370 140 QDFKP-----EDLNIKYDVIWIQ 157 (256)
Q Consensus 140 ~~~~~-----~~~~~~~D~V~~~ 157 (256)
..... ...+..||++.|+
T Consensus 163 ~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 163 QKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred hhhcchhhhccCccceeeEEecC
Confidence 22111 1111249999987
No 387
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.82 E-value=1.3 Score=37.26 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=50.8
Q ss_pred CCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
++.+|+=+|+| .|..+...+.. |. +|+++|.++.-.+.+...+.. .+ .....+..++...-. .+|+|+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~---~v-~~~~~~~~~l~~~l~--~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG---RI-HTRYSNAYEIEDAVK--RADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc---ee-EeccCCHHHHHHHHc--cCCEEEEcc
Confidence 45779999887 44444444433 55 799999998765554443211 11 111111111111112 589999764
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
....-+.+ .-+-++..+.++|++.++-.
T Consensus 239 ~~~g~~~p--~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 239 LIPGAKAP--KLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ccCCCCCC--cCcCHHHHhcCCCCCEEEEE
Confidence 22111000 01224455667999877753
No 388
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.80 E-value=2 Score=31.11 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=24.1
Q ss_pred EEcCCCC--HhHHHHHH--hcC-CeEEEEeCCHHHHHHHHHH
Q psy8370 87 DVGAGIG--RISKYLLA--KHF-DKIDLLEQSSKFIEQAKEE 123 (256)
Q Consensus 87 DiG~G~G--~~~~~l~~--~~~-~~v~~vD~s~~~~~~a~~~ 123 (256)
|||++.| .....++. .+. .+|+++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 55554432 222 3899999999999988888
No 389
>PRK07832 short chain dehydrogenase; Provisional
Probab=85.78 E-value=15 Score=29.15 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=42.1
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCcee
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIKYD 152 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~~D 152 (256)
++|=.|++.|. ++..+++.|+ +|+.++.+++..+...+.+...+.....+...|+.+..... ..+.+|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 46666765442 4444555676 78888888776665555544333222144667775532110 013589
Q ss_pred EEEechh
Q psy8370 153 VIWIQWV 159 (256)
Q Consensus 153 ~V~~~~~ 159 (256)
+++.+..
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 9887653
No 390
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.65 E-value=8.2 Score=31.28 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=54.0
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---------CCcc---------eE-EEccccc
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---------DKLD---------KC-YNVGIQD 141 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~i~---------~~-~~~d~~~ 141 (256)
.+|.=||+|. | .++..++..|. +|+.+|.+++.++.+++...... ..+. .+ ...|...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 4688889983 2 35555666676 89999999999887665433210 0000 00 1111110
Q ss_pred cCCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 142 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. ..|+|+.... ... +....+++++.+.++|+..++
T Consensus 83 ----~~--~aDlVieav~-e~~--~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 ----LS--DADFIVEAVP-EKL--DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----hC--CCCEEEEcCc-CcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 11 4688887531 111 234668888888888876554
No 391
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.63 E-value=3.2 Score=33.09 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=40.2
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccC
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFK 143 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~ 143 (256)
+.++..++|+|||.|.++.+++... ...++.||-... ...+-....... ..+ .-+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~-R~K~D~~~~~~~~~~~~-~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN-RHKADNKIRKDESEPKF-ERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc-cccchhhhhccCCCCce-EEEEEEeeccc
Confidence 4667799999999999999987654 237888997542 112223333222 234 55566776664
No 392
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.62 E-value=21 Score=31.55 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh---cC--CeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEccc-cccCCCCCCCce
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK---HF--DKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGI-QDFKPEDLNIKY 151 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~---~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~i~~~~~~d~-~~~~~~~~~~~~ 151 (256)
+...|.|.-||+|.+....... +. ..++|.+....+...+..++.-++ ... ....+|- ....... ...|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~-~~~~~dtl~~~d~~~-~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF-NIINADTLTTKEWEN-ENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc-CcccCCcCCCccccc-cccC
Confidence 4579999999999988764331 11 268999999999998888754322 122 2222222 2111111 1246
Q ss_pred eEEEechh---------------------h---hccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWV---------------------L---MFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~---------------------l---~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+|+++-- . .+.+..+ ..++..+..+|++||...+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKAD-LAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhh-HHHHHHHHHhcCCCCeEEEE
Confidence 76664420 1 1122222 36888889999999976554
No 393
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.24 E-value=5.9 Score=33.85 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=68.7
Q ss_pred CCCCeEEEEcC-CCC------HhHHHHHHhcCC-eEEEEeCC-HHHHHHHHHHHHhcCCCcceEEEccccccCCC-----
Q psy8370 80 PGKTRVLDVGA-GIG------RISKYLLAKHFD-KIDLLEQS-SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----- 145 (256)
Q Consensus 80 ~~~~~vLDiG~-G~G------~~~~~l~~~~~~-~v~~vD~s-~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~----- 145 (256)
.++..||=+|- |+| -++.++..++.+ -+++.|.- |.+++..+...... .+ .++..+-..-|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~--~v-~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV--GV-PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc--CC-ceecCCCCCCHHHHHHHH
Confidence 34567777775 555 355666555553 56778865 66677777665553 34 4554422221110
Q ss_pred ---CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 146 ---DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 146 ---~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.....+|+|+..-.-.+--++++-.-++++.+.++|.-.+++.+.
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 002468999998665444457777889999999999999999864
No 394
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.20 E-value=8.7 Score=31.42 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=55.4
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHH--HH--hcCCCcceEEEccccccCCCCCCCceeEEEe
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEE--IL--KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~~--~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~ 156 (256)
.+|+=+|+|. |.++..|.+.|. .|+.++-+++.++..++. +. ..+ .. ......... +... +.+|+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g-~~-~~~~~~~~~-~~~~--~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQG-QA-SLYAIPAET-ADAA--EPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCC-cc-eeeccCCCC-cccc--cccCEEEE
Confidence 5788999983 456666766665 799999887655555432 11 001 00 000100000 1111 36999887
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
..=-++ ....++.+...+.++..++...+
T Consensus 77 ~vK~~~-----~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAYD-----AEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHHh-----HHHHHHHHHhhCCCCCEEEEEeC
Confidence 633222 34678888999999987776543
No 395
>PRK12743 oxidoreductase; Provisional
Probab=84.99 E-value=14 Score=29.09 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEe-CCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLE-QSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD-~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
++++|=.|++.|. ++..++++|+ +|+.+. .+....+...+.....+.++ .++..|+.+..... ..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRA-EIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCce-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578888876552 4444555666 676664 44444555444444444455 77788876643110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~id~li~~ag 89 (256)
T PRK12743 80 RIDVLVNNAG 89 (256)
T ss_pred CCCEEEECCC
Confidence 6899987643
No 396
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.94 E-value=5.7 Score=31.19 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|++++.+++..+...+.+...+.++ ..+..|+.+...... .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKV-VPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeE-EEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46788988886663 5566666677 89999998877776666655444345 667778765432100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6899987644
No 397
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.90 E-value=6.5 Score=32.12 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=57.7
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~-~~~~~~~~~ 150 (256)
....++.+||=.|+ |.|..+..++.....++++++.+++-.+.+++. +.. .++.. ++.+ ...... +.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~--~vi~~~~~~~~~~v~~~~~-~g 211 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD--AVFNYKTVSLEEALKEAAP-DG 211 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--EEEeCCCccHHHHHHHHCC-CC
Confidence 34567889988874 566677777665333799999888877777652 111 22221 1111 000011 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+|+|+.... ...++...+.|+++|.++..
T Consensus 212 vd~vld~~g---------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG---------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC---------HHHHHHHHHhhccCCEEEEE
Confidence 898886432 13557788899999999865
No 398
>PRK07791 short chain dehydrogenase; Provisional
Probab=84.66 E-value=9 Score=30.86 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH---------HHHHHHHHHHHhcCCCcceEEEccccccCCCC--
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS---------KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-- 146 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~---------~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~-- 146 (256)
+++++|-.|++.|. ++..+++.|+ +|+.++.+. ..++.+.+.+...+.++ .++..|+.+.....
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEA-VANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCce-EEEeCCCCCHHHHHHH
Confidence 56788988887763 5555666777 788887654 33444444444333345 56777876542110
Q ss_pred ------CCCceeEEEechh
Q psy8370 147 ------LNIKYDVIWIQWV 159 (256)
Q Consensus 147 ------~~~~~D~V~~~~~ 159 (256)
..+..|+++.+..
T Consensus 83 ~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 0147899988754
No 399
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.64 E-value=7.3 Score=30.54 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..++++|+ +|++++.++...+...+.....+.++ .++..|+.+..... ..+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRA-LAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCce-EEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45778878875552 5555666777 89999998876666655555444455 77888876542210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899887754
No 400
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.56 E-value=8.5 Score=31.49 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccC-CCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-PEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~-~~~~~~~~D~V 154 (256)
....++.+||-.|+| .|..+..++.....++++++.+++..+.+++. . ...++...-.... .... .+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g-----~~~~~~~~~~~~~~~~~~--~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-G-----ADEVVDSGAELDEQAAAG--GADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-C-----CcEEeccCCcchHHhccC--CCCEE
Confidence 345677889988886 56666555555333899999998877766432 1 1012211110000 0112 58988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+....- ...+..+.+.|+++|.++...
T Consensus 230 i~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 864220 135566788999999988753
No 401
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.38 E-value=11 Score=30.99 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc----CCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~----~~~~~~~~ 150 (256)
....++.+||-+|+| .|..+..++.. |...+++++.+++..+.+++. + ...++..+-.+. .... +.
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~~~~~--~~ 226 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----G--ATETVDPSREDPEAQKEDNP--YG 226 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C--CeEEecCCCCCHHHHHHhcC--CC
Confidence 355677899999865 24455555544 443488899988877766432 1 101121111110 0111 25
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++....- ...+..+.+.|+++|.++...
T Consensus 227 vd~v~~~~~~--------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 227 FDVVIEATGV--------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CcEEEECCCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 8999865210 146667788899999998753
No 402
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.37 E-value=11 Score=30.00 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=54.8
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V 154 (256)
....++.+||-.|+|. |..+..++.. |...+++++.+++-.+.+++.- ....+ .... ... ... ..+|+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g--~~~~~---~~~~-~~~-~~~--~~~d~v 163 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG--PADPV---AADT-ADE-IGG--RGADVV 163 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC--CCccc---cccc-hhh-hcC--CCCCEE
Confidence 3566788898888754 4555555544 4423999999888777655431 00111 1110 001 111 258988
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEE
Confidence 864221 13556678889999999865
No 403
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.26 E-value=5.6 Score=32.41 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCC-HhHHH-HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEech
Q psy8370 81 GKTRVLDVGAGIG-RISKY-LLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 158 (256)
Q Consensus 81 ~~~~vLDiG~G~G-~~~~~-l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~ 158 (256)
.+.+|+=||+|.- ..... +...|. +|+++|.++...+.++. .+ . .+. +..++...-. .+|+|+...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G--~-~~~--~~~~l~~~l~--~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MG--L-SPF--HLSELAEEVG--KIDIIFNTI 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cC--C-eee--cHHHHHHHhC--CCCEEEECC
Confidence 5789999998742 22222 223355 89999999775444432 12 1 222 1122211112 589999853
Q ss_pred hhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 159 VLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 159 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+.. .+-+...+.++|++.++-
T Consensus 219 -----p~~---~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 219 -----PAL---VLTKEVLSKMPPEALIID 239 (296)
T ss_pred -----Chh---hhhHHHHHcCCCCcEEEE
Confidence 211 133456677889887664
No 404
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.01 E-value=3.7 Score=33.86 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D 152 (256)
...++.+||=+|+| .|..+..+++. |...|++++.+++-.+.+++. + ...++.. +............+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g--a~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G--ADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C--CCEEEcCCcchHHHHHHHhCCCCCC
Confidence 45668899988864 23344444443 553499999998877776543 1 1012211 111110000112589
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+.... . ...+....+.|+++|.+++..
T Consensus 234 ~vid~~g------~--~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG------N--TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC------C--HHHHHHHHHHhhcCCEEEEEc
Confidence 9986432 0 134556678899999998753
No 405
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.75 E-value=12 Score=33.85 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred CeEEEEcCCCCHhHHHHHH----hcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEe
Q psy8370 83 TRVLDVGAGIGRISKYLLA----KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWI 156 (256)
Q Consensus 83 ~~vLDiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~ 156 (256)
.+|+=+ |.|+.+..+++ .+. .++.+|.+++.++.+++. .. ..+.+|..+.... .+-...|++++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~-~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY------GY-KVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC------CC-eEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 455545 55555555443 344 899999999988877642 23 6788898775421 11235787776
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.. ++++....+-...+.+.|+..++..
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 52 2222222333445567888888875
No 406
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.65 E-value=19 Score=28.49 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCC-CH----hHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCcceEEEccccccCCCC------
Q psy8370 81 GKTRVLDVGAGI-GR----ISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------ 146 (256)
Q Consensus 81 ~~~~vLDiG~G~-G~----~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------ 146 (256)
.++++|-.|+++ +. .+..+++.|+ +|+.++.+. +.++...+... +.++ .++..|+.+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~-~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQES-LLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCce-EEEecCCCCHHHHHHHHHHH
Confidence 457888899752 32 4555666676 787776542 22333322221 2344 56777876543211
Q ss_pred --CCCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 147 --LNIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 147 --~~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
..+.+|+++.+..+. ..+.+++. .+.+.+.+.|+++|.++...
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 024789988764322 11222222 13355667777788777653
No 407
>PRK08507 prephenate dehydrogenase; Validated
Probab=83.51 E-value=10 Score=30.47 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=47.3
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l 160 (256)
+|.=||+|. |.++..+...+.. .|+++|.++...+.+.+ .+ +... ..+..+. . ..|+|+..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g--~~~~-~~~~~~~----~--~aD~Vilav-- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG--LVDE-IVSFEEL----K--KCDVIFLAI-- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC--CCcc-cCCHHHH----h--cCCEEEEeC--
Confidence 466677764 3455555555643 79999999887665532 11 1011 1122211 1 368888763
Q ss_pred hccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 161 MFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
|+......++++.. ++++..++
T Consensus 67 ---p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 ---PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred ---cHHHHHHHHHHHhc-cCCCCEEE
Confidence 44455567777777 77765443
No 408
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=83.24 E-value=0.81 Score=36.87 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCceeEEEechh-hhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 148 NIKYDVIWIQWV-LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 148 ~~~~D~V~~~~~-l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
.+.||+|+.... .|.+.++ +.++++|+|.+++.....- ..-......--.+.+.++.+++||+...
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKfm-----vdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKFM-----VDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchhh-----eeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 367999987754 4555432 6678899999998521110 0100111112346778899999998653
No 409
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.18 E-value=7.8 Score=31.36 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=53.8
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc----------eE-EEccccccC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD----------KC-YNVGIQDFK 143 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~----------~~-~~~d~~~~~ 143 (256)
.+|.=||+|.- .++..++..|. +|+.+|.+++.++.+++...... ..+. .+ ...|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a- 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA- 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH-
Confidence 46788888843 34444555565 89999999998888776542110 0110 00 12222211
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
. ...|+|+.... ..+ +-...+++++...++++..+.
T Consensus 82 --~--~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 --V--KDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --h--cCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEE
Confidence 1 14688887632 111 234567888888887776553
No 410
>PRK05875 short chain dehydrogenase; Provisional
Probab=83.17 E-value=21 Score=28.30 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
+++++|-.|++.|. ++..++++|+ +|++++-++...+...+..... ..++ .++..|+.+......
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAV-RYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCce-EEEEcCCCCHHHHHHHHHHHHHH
Confidence 35788888865442 4444555677 8999998876555444443322 1245 677778765432110
Q ss_pred CCceeEEEech
Q psy8370 148 NIKYDVIWIQW 158 (256)
Q Consensus 148 ~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 84 ~~~~d~li~~a 94 (276)
T PRK05875 84 HGRLHGVVHCA 94 (276)
T ss_pred cCCCCEEEECC
Confidence 12579888764
No 411
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.15 E-value=22 Score=28.46 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCeEEEEcCC--CC--H-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAG--IG--R-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G--~G--~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++++|=.|++ .| . .+..+++.|+ +|+.++.++...+.+.+.....+ .. ..+..|+.+..... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELG-SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcC-Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 35788888875 23 2 5555666777 78888887543333333222222 11 35667776653211 0
Q ss_pred CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+.+.+.+.|+.+|.++...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 24789998875432 12223322 23455666777778776653
No 412
>PLN02827 Alcohol dehydrogenase-like
Probab=83.14 E-value=3 Score=35.19 Aligned_cols=98 Identities=14% Similarity=-0.025 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc-----cccccCCCCCCCc
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-----GIQDFKPEDLNIK 150 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~-----d~~~~~~~~~~~~ 150 (256)
...++.+||-.|+| -|..+..++.. |...++++|.++.-.+.+++. +.. .++.. ++.........+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~--~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT--DFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--EEEcccccchHHHHHHHHHhCCC
Confidence 45678899988864 23344444433 554688999888877766442 211 12211 1111000000125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
+|+|+-...- ...+....+.+++| |.+++.-
T Consensus 264 ~d~vid~~G~--------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVGD--------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhccCCCEEEEEC
Confidence 8988865321 13456677788898 9998753
No 413
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.95 E-value=8.9 Score=30.01 Aligned_cols=77 Identities=9% Similarity=-0.040 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|-.|++.|. ++..++++|. +|+.++-++.-.+...+.+...+.++ .++.+|+.+...... .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEA-LFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45788888875553 4455556676 79999998876666555555444456 777888865421100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6799987654
No 414
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.83 E-value=9.3 Score=29.96 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|-.|++.|. ++..++++|+ +|+.++-+++.++...+.+...+.++ .++.+|+.+..... ..+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAA-EALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCce-EEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788888865542 4444555676 89999998876665555554444455 67788876542110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
++|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6788887643
No 415
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.78 E-value=13 Score=27.21 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|.= .++..|++.|+ +|++.|.+++..+...+. + -....+..+.. . ..|+|++...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~~~s~~e~~---~--~~dvvi~~v~-- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEVADSPAEAA---E--QADVVILCVP-- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEEESSHHHHH---H--HBSEEEE-SS--
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhhhhhhhhHh---h--cccceEeecc--
Confidence 4555666532 24445555677 899999998766555432 1 22334444442 1 4688887522
Q ss_pred ccCHHHHHHHHHH--HhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEee
Q psy8370 162 FILDEDIIKFLNL--CKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228 (256)
Q Consensus 162 ~~~~~~~~~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 228 (256)
+++....++.. +...|++|..++-.... -..+..++.+.+.+.|...++.-
T Consensus 67 --~~~~v~~v~~~~~i~~~l~~g~iiid~sT~--------------~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 67 --DDDAVEAVLFGENILAGLRPGKIIIDMSTI--------------SPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp --SHHHHHHHHHCTTHGGGS-TTEEEEE-SS----------------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred --cchhhhhhhhhhHHhhccccceEEEecCCc--------------chhhhhhhhhhhhhccceeeeee
Confidence 11445567777 78888887766653111 11234567777888887766544
No 416
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.71 E-value=17 Score=28.61 Aligned_cols=104 Identities=9% Similarity=0.039 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCC--C---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGI--G---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|+++ | .++..+++.|+ +|+.++.++...+.+.+. . ...+ .++..|+.+......
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~--~~~~-~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-V--DEED-LLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-c--cCce-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888762 3 25566666777 788887764433322222 1 1234 667788765421110
Q ss_pred CCceeEEEechhhhc----------cCHHHH-----------HHHHHHHhhhcCCCcEEEEEe
Q psy8370 148 NIKYDVIWIQWVLMF----------ILDEDI-----------IKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~----------~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+..... .+.+++ ..+.+.+.+.|+.+|.++...
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 81 VGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred hCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 147899988754321 222222 223455566677778766543
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.57 E-value=11 Score=34.97 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=59.8
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc---------eEE-EccccccCC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD---------KCY-NVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~---------~~~-~~d~~~~~~ 144 (256)
.+|.-||+|+= ..+..++..|+ .|+.+|.+++.++.+..++...- ..+. .+. ..|+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh--
Confidence 57999999973 35555666677 89999999999888776653210 0110 001 1122111
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
...|+|+=. +.+.+ +-..++++++-+.++|+.+|.-
T Consensus 391 ----~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilas 426 (715)
T PRK11730 391 ----ERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILAS 426 (715)
T ss_pred ----cCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 246777754 33444 5566899999999999876654
No 418
>PRK05876 short chain dehydrogenase; Provisional
Probab=82.54 E-value=8.7 Score=30.75 Aligned_cols=77 Identities=10% Similarity=0.022 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..|++.|+ +|+.++.++..++...+.+...+.++ .++..|+.+..... ..+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDV-HGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45678877776553 5555666677 79999988876666555554433345 67778876543210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6899887754
No 419
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.50 E-value=5.4 Score=32.15 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=54.8
Q ss_pred CeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcc---------eE-EEccccccCC
Q psy8370 83 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLD---------KC-YNVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~---------~~-~~~d~~~~~~ 144 (256)
.+|.=||+|. +.++..++..|. +|+++|.+++.++.+++++... ...+. .+ ...|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD--- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH---
Confidence 3577788883 456666666676 8999999999887665433211 00010 01 1122211
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
. ...|+|+.... ..+ +....+++++.+.++|+..+.
T Consensus 80 -~--~~aDlVi~av~-e~~--~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -L--KDADLVIEAAT-ENM--DLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -h--ccCCeeeeccc-ccH--HHHHHHHHHHHhhCCCCcEEE
Confidence 1 24788887521 111 233578888999999887663
No 420
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.27 E-value=11 Score=31.17 Aligned_cols=97 Identities=14% Similarity=0.015 Sum_probs=58.6
Q ss_pred CCCCCCCeEEEEcC--CCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE---c-ccccc-CCCCCCC
Q psy8370 77 KSDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN---V-GIQDF-KPEDLNI 149 (256)
Q Consensus 77 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~---~-d~~~~-~~~~~~~ 149 (256)
....++.+||=.|+ |.|..+..+++....++++++.+++-.+.+++.+.. . .++. . +..+. ..... +
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa---~--~vi~~~~~~~~~~~i~~~~~-~ 220 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF---D--DAFNYKEEPDLDAALKRYFP-N 220 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC---c--eeEEcCCcccHHHHHHHhCC-C
Confidence 35677889998886 466677766655333799988888777777653221 1 1221 1 21110 00011 2
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.+|+|+.... ...+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG---------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC---------HHHHHHHHHHhccCcEEEEe
Confidence 5899886422 13566778899999999875
No 421
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.06 E-value=12 Score=28.98 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCCH----hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~----~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
..+++|-.|+ +|. ++..++++|. +|++++.++...+...+.....+.++ .++.+|+.+...... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKA-AAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcE-EEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 444 4445555666 89999998776555555444333455 678888876532100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+..|+++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 35899987654
No 422
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.99 E-value=8.3 Score=31.19 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=47.9
Q ss_pred hHHHHHHHHhccCCCCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy8370 65 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127 (256)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 127 (256)
...++.+.+ .. ...++..|||.=+|+|..+......+- ..+|+|+++...+.+.+++...
T Consensus 208 P~~l~~r~i-~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLI-RD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHH-Hh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 345566666 33 467889999999999999998755554 8999999999999999998754
No 423
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.92 E-value=5.3 Score=33.10 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~~~~~~~~~D 152 (256)
...++.+||=.|+|. |..+..++.. |...|++++.+++-.+.+++. +.. .++.. +............+|
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM--QTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc--eEecCcccCHHHHHHHhcCCCCC
Confidence 456778999888743 3344444443 554588999998877766442 110 11111 111110000112477
Q ss_pred -EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 -VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 -~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+-... -...+....+.|++||.+++..
T Consensus 231 ~~v~d~~G--------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 231 QLILETAG--------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred eEEEECCC--------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5554321 0246677788999999999864
No 424
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.81 E-value=9.6 Score=29.84 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=46.0
Q ss_pred CeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
+++|-.|++.|. ++..++++|. +|++++-++...+...+.+...+.++ .++..|+.+...... .+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQV-LTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 567877876652 4555556677 89999988776666655554333355 677788765321100 1367
Q ss_pred eEEEech
Q psy8370 152 DVIWIQW 158 (256)
Q Consensus 152 D~V~~~~ 158 (256)
|+++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9888764
No 425
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.79 E-value=11 Score=31.08 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=56.2
Q ss_pred cCCCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-------ccccCCCC
Q psy8370 76 KKSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-------IQDFKPED 146 (256)
Q Consensus 76 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-------~~~~~~~~ 146 (256)
.....++.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. .. ..+......+ +.... ..
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~--~~vi~~~~~~~~~~~~~~~~~~-~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA--THTVNVRTEDTPESAEKIAELL-GG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC--cEEeccccccchhHHHHHHHHh-CC
Confidence 34567788888877654 5555555554 442388898888777666442 11 1110111111 11111 11
Q ss_pred CCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 ~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+....- ...++...+.|+++|.++..
T Consensus 233 --~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 --KGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred --CCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 258999875321 12566778899999998865
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.77 E-value=11 Score=30.57 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=49.7
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc-c-eEEE--ccccccCCCCCCCceeEEEec
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-D-KCYN--VGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i-~-~~~~--~d~~~~~~~~~~~~~D~V~~~ 157 (256)
+|+=||+|.- .++..|+..|. +|+.++.+++..+..++. +..+ . .... .-..+... . ..+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~-~--~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPAE-L--GPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChhH-c--CCCCEEEEe
Confidence 5778888743 34455555565 899999876655544432 1111 0 0000 00011111 1 268988876
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
--- .+...+++.+...+.++..++..
T Consensus 74 ~k~-----~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VKA-----YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred ccc-----ccHHHHHHHHhhhcCCCCEEEEe
Confidence 332 23456778888888877666654
No 427
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=81.52 E-value=27 Score=28.42 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=59.0
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|. ..++..+++.+. +|++.|.+++..+.+.+ .+ . . ...+..+...... ..|+|+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~----~g--~-~-~~~s~~~~~~~~~--~advVi~~---- 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGK----LG--I-T-ARHSLEELVSKLE--APRTIWVM---- 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----CC--C-e-ecCCHHHHHHhCC--CCCEEEEE----
Confidence 355567663 235555555666 78999999876554432 11 1 1 2223333221111 25777765
Q ss_pred ccCH-HHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 162 FILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 162 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+++ +....++..+...+++|..++-... ....+..++.+.+.+.|...++
T Consensus 67 -vp~~~~~~~v~~~i~~~l~~g~ivid~st--------------~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 -VPAGEVTESVIKDLYPLLSPGDIVVDGGN--------------SRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred -ecCchHHHHHHHHHhccCCCCCEEEECCC--------------CCchhHHHHHHHHHHcCCeEEe
Confidence 222 2445666777777877655443211 1111345566677777765544
No 428
>PRK06914 short chain dehydrogenase; Provisional
Probab=81.50 E-value=25 Score=27.97 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC-------CCC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED-------LNI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~-------~~~ 149 (256)
+.++|-.|++.|. ++..++++|+ +|++++-++...+...+.....+ .++ .++.+|+.+..... .-+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNI-KVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCce-eEEecCCCCHHHHHHHHHHHHhcC
Confidence 3567878865442 4444556676 79999887766555544333222 245 77788887643210 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+|+.+..
T Consensus 81 ~id~vv~~ag 90 (280)
T PRK06914 81 RIDLLVNNAG 90 (280)
T ss_pred CeeEEEECCc
Confidence 5788887643
No 429
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.43 E-value=17 Score=30.14 Aligned_cols=99 Identities=14% Similarity=0.026 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccc-cCCCCCCCc
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQD-FKPEDLNIK 150 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~-~~~~~~~~~ 150 (256)
....++.+||-.|+| .|..+..+++. |...+++++.+++-.+.+++. + ...++.. +... .........
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g--~~~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G--ATDIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C--CceEecCCCCCHHHHHHHHhCCCC
Confidence 345677889888765 34444555444 454689999998777666642 1 1022211 1100 000001125
Q ss_pred eeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 151 ~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+|+++....- ...+..+.+.|+++|.++...
T Consensus 236 ~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGGG--------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 8988864220 135677888899999988653
No 430
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=81.28 E-value=15 Score=25.56 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=48.7
Q ss_pred ceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEEeee
Q psy8370 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 229 (256)
Q Consensus 150 ~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 229 (256)
-.|+|+..+--. +.++...|-.+.+.|..+|.+.+..+.. ...-+.++.++.+....+|+.......
T Consensus 45 vvD~vllWwR~~---DgDL~D~LvDa~~~L~d~G~IWvltPK~----------gr~g~V~~~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 45 VVDVVLLWWRDD---DGDLVDALVDARTNLADDGVIWVLTPKA----------GRPGHVEPSDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccEEEEEEECC---cchHHHHHHHHHhhhcCCCEEEEEccCC----------CCCCCCCHHHHHHHHhhcCCeeeeeec
Confidence 589988864422 2366778888899999999999964322 222345778999999999998876554
Q ss_pred e
Q psy8370 230 V 230 (256)
Q Consensus 230 ~ 230 (256)
.
T Consensus 112 v 112 (127)
T PF11253_consen 112 V 112 (127)
T ss_pred c
Confidence 3
No 431
>PLN02740 Alcohol dehydrogenase-like
Probab=81.28 E-value=3.6 Score=34.71 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=55.6
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc-----ccc-cCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-----IQD-FKPEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d-----~~~-~~~~~~~ 148 (256)
....++.+||-+|+| .|..+..+++. |..+|+++|.++.-++.+++. +.. .++... +.+ ......
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~v~~~~~- 266 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT--DFINPKDSDKPVHERIREMTG- 266 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc--EEEecccccchHHHHHHHHhC-
Confidence 356778899999875 23444444443 444699999998877777542 111 222111 111 000011
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEe
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 189 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 189 (256)
+.+|+|+-...- ...++.....++++ |.+++..
T Consensus 267 ~g~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEc
Confidence 148988865331 13555666778886 8887754
No 432
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=81.15 E-value=7.1 Score=30.79 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=46.3
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCcee
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIKYD 152 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~~D 152 (256)
++|-.|++.|. ++..++++|+ +|+.++.++..++.+.+.+...+ ++ .++..|+.+..... ..+.+|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~-~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG-EV-YAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-Cc-eEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 57777876553 5555666777 79999998877766655554332 45 67778876532110 013689
Q ss_pred EEEechh
Q psy8370 153 VIWIQWV 159 (256)
Q Consensus 153 ~V~~~~~ 159 (256)
+++.+..
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9887644
No 433
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.14 E-value=5.1 Score=32.98 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCCCCCCeEEEEcCCC-CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccc-cCCCCCCCceeEE
Q psy8370 77 KSDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FKPEDLNIKYDVI 154 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~-~~~~~~~~~~D~V 154 (256)
....++.+||-.|+|. |..+..++.....+++++..+++..+.+++. . ...+......++.+ +........+|++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~-g--~~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL-G--ADDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh-C--CCEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 3556788999998763 6666666665333788888888777766442 1 11110111111111 1000011258999
Q ss_pred EechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 155 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 155 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
+....- ...+..+.+.|+++|.++..
T Consensus 232 ld~~g~--------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATGN--------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 875320 13567778899999998865
No 434
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.12 E-value=11 Score=29.54 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|++++.++...+...+.+...+.+. .++..|+.+...... .+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKA-EALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678888877663 5555666676 89999998776666555554433344 566777755432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
++|+++.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899886653
No 435
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=81.11 E-value=11 Score=29.83 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|-.|++.|. ++..++++|+ +++.++-++..++.....+...+.++ .++.+|+.+..... ..+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEA-HGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45788888877653 5566667777 78888888877666666655444455 67788876543210 013
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999877543
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.96 E-value=3.5 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCC
Q psy8370 81 GKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 81 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s 113 (256)
.+.+|+=+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 468899999983 4 46666777788899999987
No 437
>PRK06484 short chain dehydrogenase; Validated
Probab=80.96 E-value=17 Score=32.04 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..++++|+ +|+.++.++..++...+.. +.+. ..+..|+.+...... .+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---GDEH-LSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-eEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567887887666 35566666777 8999998877666555433 2233 456777765432110 14
Q ss_pred ceeEEEechhhh-------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 150 KYDVIWIQWVLM-------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 150 ~~D~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+|+++.+.... ..+.+++. .+.+.+...++.+|.+++..
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 689998764321 12222222 23555566667778877753
No 438
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=80.90 E-value=11 Score=29.55 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.+++||-.|++.|. ++..++++|. +++.++.+....+.........+.++ .++..|+.+..... ..+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQA-FACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46889999976663 4455666676 78888888777666555554433345 66778877553211 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 6798887644
No 439
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.89 E-value=11 Score=29.70 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEccccccCCCCC--------
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--DCDKLDKCYNVGIQDFKPEDL-------- 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~i~~~~~~d~~~~~~~~~-------- 147 (256)
.++++|-.|++.|. ++..++++|+ +|+.++.++...+...+.+.. .+.++ .++..|+.+......
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARV-LAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceE-EEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888876552 5555666777 799999988777666665543 22345 677788765431110
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+.+|+++.+..
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 136898887654
No 440
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.78 E-value=6.1 Score=32.62 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=54.0
Q ss_pred CeEEEEcC--CCCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccccC-CCCCCCceeEEE
Q psy8370 83 TRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQDFK-PEDLNIKYDVIW 155 (256)
Q Consensus 83 ~~vLDiG~--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~~~-~~~~~~~~D~V~ 155 (256)
.+||=.|+ |.|..+..++.. |..+|++++.+++-.+.+++.+.. . .++.. ++.+.. ...+ +.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--~---~vi~~~~~~~~~~i~~~~~-~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--D---AAINYKTDNVAERLRELCP-EGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--c---EEEECCCCCHHHHHHHHCC-CCceEEE
Confidence 78988885 567777777665 443799999888776666553321 1 22211 111100 0011 2589998
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
.... . ..+..+.+.|+++|.++..
T Consensus 230 d~~g------~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 DNVG------G---EISDTVISQMNENSHIILC 253 (345)
T ss_pred ECCC------c---HHHHHHHHHhccCCEEEEE
Confidence 6432 1 1245677889999999875
No 441
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.66 E-value=17 Score=25.97 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+.+|+-+|+|. | ..+..+...+..+++.+|.+++..+...+.+.... + .....+..+. .. .+|+|++.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~~---~~--~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--I-AIAYLDLEEL---LA--EADLIINT 88 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--c-ceeecchhhc---cc--cCCEEEeC
Confidence 4568899999863 1 23334434444589999999876655444433210 1 1122232222 12 58999987
Q ss_pred hh
Q psy8370 158 WV 159 (256)
Q Consensus 158 ~~ 159 (256)
..
T Consensus 89 ~~ 90 (155)
T cd01065 89 TP 90 (155)
T ss_pred cC
Confidence 44
No 442
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.45 E-value=12 Score=30.40 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCc
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~ 150 (256)
+.++|=.|++.|. ++..++++|+ +|+.++.+++.++...+.....+..+ .++..|+.+..... ..+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~-~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDA-MAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888876553 4455556666 89999999877666655554433345 67778876543110 0136
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
.|+++.+..
T Consensus 118 id~li~~AG 126 (293)
T PRK05866 118 VDILINNAG 126 (293)
T ss_pred CCEEEECCC
Confidence 899997743
No 443
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.43 E-value=6.9 Score=32.79 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ccccccCCCCCCCceeEEEe
Q psy8370 79 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-VGIQDFKPEDLNIKYDVIWI 156 (256)
Q Consensus 79 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~d~~~~~~~~~~~~~D~V~~ 156 (256)
..++.+||-.|+| .|..+..+++....++++++.++.-...+.+. .+.. .++. .+......... .+|+|+-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~---~Ga~--~vi~~~~~~~~~~~~~--~~D~vid 253 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR---LGAD--SFLVSTDPEKMKAAIG--TMDYIID 253 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh---CCCc--EEEcCCCHHHHHhhcC--CCCEEEE
Confidence 3567788888875 34455555544333788888776533222111 1211 1221 11111111112 4788886
Q ss_pred chhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 157 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 157 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
... . ...++.+.+.|+++|.++...
T Consensus 254 ~~g---~-----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TVS---A-----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCC---C-----HHHHHHHHHHhcCCcEEEEeC
Confidence 432 0 135667788999999998763
No 444
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.40 E-value=13 Score=29.52 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEccccccCCCCC-------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDL-------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~i~~~~~~d~~~~~~~~~-------~~ 149 (256)
.++++|-.|++.|. ++..+++.|+ +|+.++.++..++...+.+... +.++ .++..|+.+...... .+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDV-SYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCce-EEEEecCCCHHHHHHHHHHHHhhC
Confidence 45678888877663 5566667787 7999999887766665554432 2345 677788766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
No 445
>PRK07478 short chain dehydrogenase; Provisional
Probab=80.39 E-value=13 Score=29.18 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..+++.|+ +|+.++.++...+...+.+...+.++ .++.+|+.+..... ..+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEA-VALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 35678877776552 5556666677 79999988877766666655444455 67777876543110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 83 ~id~li~~ag 92 (254)
T PRK07478 83 GLDIAFNNAG 92 (254)
T ss_pred CCCEEEECCC
Confidence 6898887754
No 446
>PRK08303 short chain dehydrogenase; Provisional
Probab=80.17 E-value=9 Score=31.30 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCH----------HHHHHHHHHHHhcCCCcceEEEccccccCCCCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSS----------KFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~----------~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~ 147 (256)
.++++|-.|++.|. .+..++..|+ +|+.++.++ +.++.+.+.+...+.++ .++..|+.+......
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRG-IAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCce-EEEEcCCCCHHHHHH
Confidence 46788989987763 5555666677 788887763 23333334444333345 567778765432110
Q ss_pred --------CCceeEEEech
Q psy8370 148 --------NIKYDVIWIQW 158 (256)
Q Consensus 148 --------~~~~D~V~~~~ 158 (256)
.+..|+++.+.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 24689988775
No 447
>PRK06500 short chain dehydrogenase; Provisional
Probab=80.15 E-value=24 Score=27.32 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|=.|++.|. ++..++++|+ +|++++.++..++...+.. +.++ .++..|+.+..... ..+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESA-LVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCce-EEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35677877765442 4445555676 7999988866554443332 2244 56677765532110 013
Q ss_pred ceeEEEech
Q psy8370 150 KYDVIWIQW 158 (256)
Q Consensus 150 ~~D~V~~~~ 158 (256)
.+|+++.+.
T Consensus 80 ~id~vi~~a 88 (249)
T PRK06500 80 RLDAVFINA 88 (249)
T ss_pred CCCEEEECC
Confidence 689888664
No 448
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.13 E-value=13 Score=31.82 Aligned_cols=102 Identities=8% Similarity=0.029 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcC--CCCHhHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCcceEEE----ccccccCC
Q psy8370 78 SDPGKTRVLDVGA--GIGRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYN----VGIQDFKP 144 (256)
Q Consensus 78 ~~~~~~~vLDiG~--G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~----~~~i~~~~~----~d~~~~~~ 144 (256)
...++.+|+=+|+ +.|..+..++.. |..+|+++|.++.-++.+++.+... +... .++. .++.+...
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~-~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIEL-LYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceE-EEECCCccccHHHHHH
Confidence 4566788888873 366777776665 3347999999999888887753211 1010 1111 11111000
Q ss_pred -CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 -EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 -~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
......+|+|+....- ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g~--------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVPV--------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCCC--------HHHHHHHHHHhccCCeEEEE
Confidence 0011258888764210 24566677888988866553
No 449
>PRK05855 short chain dehydrogenase; Validated
Probab=80.09 E-value=12 Score=33.28 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.+.++|=+|+..|. ++..++++|+ +|+.++.+....+...+.....+.++ .++.+|+.+..... ..+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVA-HAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 34678877764442 4455556677 79999998877666655555444455 77788887653211 023
Q ss_pred ceeEEEechhh
Q psy8370 150 KYDVIWIQWVL 160 (256)
Q Consensus 150 ~~D~V~~~~~l 160 (256)
.+|+++.+...
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 68999987543
No 450
>PRK05854 short chain dehydrogenase; Provisional
Probab=80.03 E-value=9.5 Score=31.23 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DKLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~i~~~~~~d~~~~~~~~--------~ 147 (256)
.+++++=.|++.|. .+..|+..|+ +|+.+.-+++-.+.+.+.+.... .++ .++..|+.+..... .
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v-~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKL-SLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEEecCCCHHHHHHHHHHHHHh
Confidence 45788888877663 5555666676 88888888776665555444321 245 67788876643211 0
Q ss_pred CCceeEEEechh
Q psy8370 148 NIKYDVIWIQWV 159 (256)
Q Consensus 148 ~~~~D~V~~~~~ 159 (256)
.+..|+++.+..
T Consensus 91 ~~~iD~li~nAG 102 (313)
T PRK05854 91 GRPIHLLINNAG 102 (313)
T ss_pred CCCccEEEECCc
Confidence 246899987754
No 451
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.82 E-value=29 Score=28.56 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEcCC-CCHhHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEc---cccc-cCCCCCCCce
Q psy8370 78 SDPGKTRVLDVGAG-IGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV---GIQD-FKPEDLNIKY 151 (256)
Q Consensus 78 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~---d~~~-~~~~~~~~~~ 151 (256)
...++.+||-.|+| .|..+..++.... ..+++++.++...+.+++. + ...++.. +..+ .......+.+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g--~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G--ATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C--CcEEEcCCcchHHHHHHHHcCCCCC
Confidence 45567888887764 3556666655533 3788888887766665542 1 1022211 1111 0000011258
Q ss_pred eEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 152 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 152 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
|+++....- ...++...+.|+++|.++..
T Consensus 238 d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF--------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 998864221 13667778899999998865
No 452
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.82 E-value=31 Score=27.94 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=54.2
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcc---------eE-EEccccccCC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLD---------KC-YNVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~---------~~-~~~d~~~~~~ 144 (256)
.+|.=||+|.- .++..++..|. +|+.+|.+++.++.+.+.+... ...+. .+ ...+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED--- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH---
Confidence 56888888843 35555656676 8999999999887765443211 00110 01 1122221
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. ..|+|+.... ... .....+++.+...++|+..++
T Consensus 81 -~~--~aD~Vieavp-e~~--~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 -LA--DCDLVIEAAT-EDE--TVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -hc--CCCEEEEcCc-CCH--HHHHHHHHHHHhhCCCCcEEE
Confidence 11 4688887521 111 223467788888899887665
No 453
>PRK06194 hypothetical protein; Provisional
Probab=79.77 E-value=11 Score=30.09 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 82 KTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
+.++|=.|++.| .++..++++|+ +|+.+|.++..++...+.....+.++ .++.+|+.+...... .+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEV-LGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567887775443 24445555676 89999988776665555444333345 667888765421110 135
Q ss_pred eeEEEechhh
Q psy8370 151 YDVIWIQWVL 160 (256)
Q Consensus 151 ~D~V~~~~~l 160 (256)
+|+|+.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7999887543
No 454
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.76 E-value=13 Score=28.90 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
++.++|-.|++.|. ++..++++|. +|+.++.++.-++.+.+.....+.++ .++..|+.+..... ..+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEV-RGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCce-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45788888864442 3344555566 79999998876665555554434455 66777876532110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5899887643
No 455
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.75 E-value=7.6 Score=30.52 Aligned_cols=75 Identities=11% Similarity=-0.000 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. ++..+++.|+ +|+.++.++. +...+.....+.++ .++..|+.+...... .+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKF-HFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeE-EEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 46788988877663 5555666777 7888776542 22333333333345 677788766532110 14
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 83 ~iD~lv~~ag 92 (251)
T PRK12481 83 HIDILINNAG 92 (251)
T ss_pred CCCEEEECCC
Confidence 6898887643
No 456
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.67 E-value=9.7 Score=29.03 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCC
Q psy8370 81 GKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 81 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s 113 (256)
...+|+-+|||. | ..+..|+..|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999983 3 36666777788789999988
No 457
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=79.66 E-value=26 Score=30.69 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=54.6
Q ss_pred eEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||.|. +.++..|+.+|+ +|++.|.+++..+...+.....+..+ . ...++.+...... ..|+|+....
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i-~-~~~s~~e~v~~l~--~~d~Iil~v~-- 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRV-K-GYHTLEELVNSLK--KPRKVILLIK-- 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcc-e-ecCCHHHHHhcCC--CCCEEEEEeC--
Confidence 455566663 346666667777 89999999998777665432222111 1 2234433332211 3576665421
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIII 187 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i 187 (256)
+......+++.+...|++|-.++-
T Consensus 76 --~~~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 76 --AGEAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred --ChHHHHHHHHHHHhhCCCCCEEEE
Confidence 224455677888888988765544
No 458
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.65 E-value=32 Score=28.04 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred eEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEechhhh
Q psy8370 84 RVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 161 (256)
Q Consensus 84 ~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~~~l~ 161 (256)
+|-=||+|. | .++..|++.+. +|++.|.+++..+.+.+ .+ . . ...+..+...... ..|+|+....-.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~----~g--~-~-~~~~~~e~~~~~~--~~dvvi~~v~~~ 70 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE----EG--A-T-GADSLEELVAKLP--APRVVWLMVPAG 70 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC--C-e-ecCCHHHHHhhcC--CCCEEEEEecCC
Confidence 455677774 2 35566666666 79999999876655432 11 1 1 1223333221111 247777652211
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEecccCCCCccccCCCCceeeCHHHHHHHHHhcCCcEEE
Q psy8370 162 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 226 (256)
Q Consensus 162 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 226 (256)
+.....+..+...+++|..++-.. .. ...+..++.+.+++.|...++
T Consensus 71 ----~~~~~v~~~l~~~l~~g~ivid~s--t~------------~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 71 ----EITDATIDELAPLLSPGDIVIDGG--NS------------YYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred ----cHHHHHHHHHHhhCCCCCEEEeCC--CC------------ChhHHHHHHHHHHHcCCEEEe
Confidence 234456677778888875444321 00 111234566777788877664
No 459
>PRK08862 short chain dehydrogenase; Provisional
Probab=79.45 E-value=13 Score=28.83 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.|. ++..++++|+ +|+.++.++..++...+.....+..+ ..+..|+.+...... -+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNV-YSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCe-EEEEccCCCHHHHHHHHHHHHHHhC
Confidence 35788989988875 6666777777 79999988887776666554433344 455566554321110 13
Q ss_pred -ceeEEEech
Q psy8370 150 -KYDVIWIQW 158 (256)
Q Consensus 150 -~~D~V~~~~ 158 (256)
.+|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 689988875
No 460
>PRK06484 short chain dehydrogenase; Validated
Probab=79.42 E-value=23 Score=31.27 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.++++|=.|++.| .++..++++|+ +|+.++.+++.++...+.. +.++ .++..|+.+...... .+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---GPDH-HALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCce-eEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4578888888776 35566666777 8999988877655444333 2234 567777765421100 14
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 79 ~iD~li~nag 88 (520)
T PRK06484 79 RIDVLVNNAG 88 (520)
T ss_pred CCCEEEECCC
Confidence 6899987754
No 461
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.40 E-value=23 Score=28.79 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHH---HHHHhcCCCcceEEEccccccCC-CCCCCcee
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAK---EEILKDCDKLDKCYNVGIQDFKP-EDLNIKYD 152 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~---~~~~~~~~~i~~~~~~d~~~~~~-~~~~~~~D 152 (256)
..++++|=+|+| |. .+..++..|+.+|+.++.+++..+.++ +.+....... .+...|+.+... ......+|
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPEC-IVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCc-eeEEechhhhhHHHhhhccCC
Confidence 346789999997 43 223344567767999998863222222 2232222222 334445443211 00012479
Q ss_pred EEEechhhhc
Q psy8370 153 VIWIQWVLMF 162 (256)
Q Consensus 153 ~V~~~~~l~~ 162 (256)
+|+.+-.+..
T Consensus 202 ilINaTp~Gm 211 (289)
T PRK12548 202 ILVNATLVGM 211 (289)
T ss_pred EEEEeCCCCC
Confidence 9998765543
No 462
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.13 E-value=18 Score=33.57 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCC--HhHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc---------eEE-Ecccccc
Q psy8370 82 KTRVLDVGAGIG--RISKYLL-AKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD---------KCY-NVGIQDF 142 (256)
Q Consensus 82 ~~~vLDiG~G~G--~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~---------~~~-~~d~~~~ 142 (256)
-.+|.-||+|+= ..+..++ ..|. .|+.+|.+++.++.+..++...- ..+. .+. ..|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG- 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence 467999999973 3445555 4476 89999999998888766553210 0110 001 111111
Q ss_pred CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
- ...|+|+=. +.+.+ +-..++++++-+.++|+.+|.-.
T Consensus 387 ---~--~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 387 ---F--KHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred ---h--ccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 246877754 34444 55668999999999998777653
No 463
>KOG1205|consensus
Probab=79.04 E-value=33 Score=27.80 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-C-CcceEEEccccccCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-D-KLDKCYNVGIQDFKPED--------L 147 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~i~~~~~~d~~~~~~~~--------~ 147 (256)
.++.|+==||.+|. ++..++.+|. +++.+--...-++...+..+... . ++ ..+..|+.+..... .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v-~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKV-LVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCcc-EEEeCccCCHHHHHHHHHHHHHh
Confidence 57888889998884 7778878887 55555556655666644444332 2 36 78888987764321 1
Q ss_pred CCceeEEEechhhhc------cCHHH-----------HHHHHHHHhhhcCC--CcEEEEEecccCC
Q psy8370 148 NIKYDVIWIQWVLMF------ILDED-----------IIKFLNLCKQILNK--NGIIIIKDNVASG 194 (256)
Q Consensus 148 ~~~~D~V~~~~~l~~------~~~~~-----------~~~~l~~~~~~Lkp--gG~l~i~~~~~~~ 194 (256)
-+..|+.+.+..+.. .+.++ ...+.+.+.+.|++ +|.+++.......
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~ 154 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK 154 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence 257899998854332 11122 22344556666654 3899887544433
No 464
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.01 E-value=16 Score=27.12 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=23.4
Q ss_pred eEEEEcCC-CCH-hHHHHHHhcCCeEEEEeCCH
Q psy8370 84 RVLDVGAG-IGR-ISKYLLAKHFDKIDLLEQSS 114 (256)
Q Consensus 84 ~vLDiG~G-~G~-~~~~l~~~~~~~v~~vD~s~ 114 (256)
+|+-+||| .|. .+..|+..|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47889998 354 56667777887899998875
No 465
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.84 E-value=6.3 Score=31.85 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCCCCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Q psy8370 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 125 (256)
Q Consensus 79 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 125 (256)
...+-+|.-||+|.....-.+ .+.+.+|.+||+++..+...+-++.
T Consensus 61 ~g~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 466789999999987777666 5556699999999998776665554
No 466
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.84 E-value=13 Score=29.04 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+++||=.|++.|. ++..++++|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSA-HALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceE-EEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788888854332 3444555676 79999998876666555555433345 667778765421100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 87 ~~d~li~~ag 96 (255)
T PRK07523 87 PIDILVNNAG 96 (255)
T ss_pred CCCEEEECCC
Confidence 5798887754
No 467
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.81 E-value=29 Score=27.38 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=54.0
Q ss_pred CCCeEEEEcCC-CCH----hHHHHHHhcCCeEEEEeCCHH---HHHHHHHHHHhcCCCcceEEEccccccCCCCC-----
Q psy8370 81 GKTRVLDVGAG-IGR----ISKYLLAKHFDKIDLLEQSSK---FIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL----- 147 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~----~~~~l~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~----- 147 (256)
.++++|=.|++ ++. ++..+++.|+ +|+.+..+.+ ..+.+.+ +....... .++..|+.+......
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRE-LTEPLNPS-LFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHH-HHhccCcc-eEeecCcCCHHHHHHHHHHH
Confidence 45788889974 333 4445555666 6766654321 1122222 22222233 566777765432110
Q ss_pred ---CCceeEEEechhhh----------ccCHHHHH-----------HHHHHHhhhcCCCcEEEEEe
Q psy8370 148 ---NIKYDVIWIQWVLM----------FILDEDII-----------KFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 148 ---~~~~D~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~i~~ 189 (256)
.+.+|+++.+.... ..+.+++. .+.+.+.+.|+.+|.++...
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~is 147 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLT 147 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 24789988775432 11222222 23456667777778776653
No 468
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.68 E-value=21 Score=29.00 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=53.9
Q ss_pred CeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cCCCc---------ceE-EEccccccC
Q psy8370 83 TRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-------DCDKL---------DKC-YNVGIQDFK 143 (256)
Q Consensus 83 ~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~i---------~~~-~~~d~~~~~ 143 (256)
.+|.=||+|. | .++..++..|. +|+++|.+++.++.+++.+.. .+ .+ ... ...+...
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKG-KMSQEEADATLGRIRCTTNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhceEeeCCHHH--
Confidence 4688888883 2 45555556666 899999999988776654331 11 00 001 1112111
Q ss_pred CCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEE
Q psy8370 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186 (256)
Q Consensus 144 ~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 186 (256)
.. ..|+|+.... .. .+....+++++...++|+..++
T Consensus 81 --~~--~aD~Vieav~-e~--~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 --LR--DADFIIEAIV-ES--EDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --hC--CCCEEEEcCc-cC--HHHHHHHHHHHHhhCCCCcEEE
Confidence 11 4688887522 11 2344567888888888877654
No 469
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.61 E-value=14 Score=29.13 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC-------CCc
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-------NIK 150 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~-------~~~ 150 (256)
++.++|=.|++.|. ++..++++|+ +|++++.++..++....... .+.++ .++..|+.+...... .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRH-RWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cCCce-EEEEccCCCHHHHHHHHHHHHhcCC
Confidence 35678888876543 5555666777 79999998876666555442 22355 677788766432100 135
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
.|+++.+..
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 798887754
No 470
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.13 E-value=11 Score=27.25 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=47.6
Q ss_pred eEEEEcCCCCH---hHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 84 RVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS--SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 84 ~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
++|=.|++.|. ++..++++|...|+.+.-+ .+..+.....+...+.++ .+...|+.+...... .++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKI-TFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEE-EEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 56777877663 5666666766588888888 555555555555444566 777888765421110 247
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
+|+++.+..
T Consensus 81 ld~li~~ag 89 (167)
T PF00106_consen 81 LDILINNAG 89 (167)
T ss_dssp ESEEEEECS
T ss_pred ccccccccc
Confidence 999997743
No 471
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=77.88 E-value=15 Score=31.48 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=48.9
Q ss_pred CCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
..+++|+-+|+|. |......+.. |. +|+++|.++.-...+.. .+ +...+..+.. . ..|+|+..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G-----~~v~~leeal---~--~aDVVIta 257 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DG-----FRVMTMEEAA---K--IGDIFITA 257 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cC-----CEeCCHHHHH---h--cCCEEEEC
Confidence 5688999999986 3333333332 44 89999998853322221 11 1122222221 2 46998764
Q ss_pred hhhhccCHHHHHHHHH-HHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLN-LCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~-~~~~~LkpgG~l~i~ 188 (256)
.. ...++. +....+|+|++++..
T Consensus 258 TG--------~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 258 TG--------NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CC--------CHHHHHHHHHhcCCCCcEEEEE
Confidence 21 123343 477889999988875
No 472
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.57 E-value=16 Score=28.65 Aligned_cols=76 Identities=11% Similarity=-0.027 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCHhH----HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 81 GKTRVLDVGAGIGRIS----KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~----~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
+++++|=.|+ +|..+ ..++++|+ +|+.++-++.-.+.....+...+.++ .++.+|+.+...... .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~-~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDA-LWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678888885 44444 44445566 89999988876666665555443345 678888876432100 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|.|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 35899887754
No 473
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.53 E-value=20 Score=32.72 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=56.0
Q ss_pred CCeEEEEcCCC-CH-hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEec
Q psy8370 82 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 157 (256)
Q Consensus 82 ~~~vLDiG~G~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~ 157 (256)
..+|+=+|+|. |. .+..+.+++. .++.+|.+++.++.+++. .. ..+.+|..+.... .+-+..|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~------g~-~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF------GM-KVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc------CC-eEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 45777777763 33 2333433455 799999999988877652 34 6788898776421 222367877765
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
. ++++....+-...+.+.|+-.++..
T Consensus 472 ~-----~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 472 I-----DDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred e-----CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 2 2222233333445556777766664
No 474
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=77.42 E-value=11 Score=29.72 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|-.|++.|. .+..+++.|+ +|+.++-++..++...+.. +.++ .++..|+.+...... .+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHV-LVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcc-eEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45688888876553 4455666677 7999998877665554433 2244 667777765432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+++.+..
T Consensus 80 ~id~li~~ag 89 (263)
T PRK06200 80 KLDCFVGNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6898887754
No 475
>PRK08643 acetoin reductase; Validated
Probab=77.40 E-value=16 Score=28.55 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=45.3
Q ss_pred CeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
+++|=.|+..| .++..++++|+ +|++++.++...+.....+...+.++ .++.+|+.+...... .+.+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKA-IAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 46776776554 24445555666 89999988776666655555433345 677888766431100 1368
Q ss_pred eEEEech
Q psy8370 152 DVIWIQW 158 (256)
Q Consensus 152 D~V~~~~ 158 (256)
|+++.+.
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9888764
No 476
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.84 E-value=21 Score=27.73 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
.+.+||-.|++.|. ++..++++|+ +|++++-++.........+...+.++ .++.+|+.+...... .+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKA-RARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeE-EEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35678877764432 3444555676 89999988765555544444433345 777888765421100 12
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
.+|+|+....
T Consensus 83 ~~d~vi~~ag 92 (251)
T PRK12826 83 RLDILVANAG 92 (251)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 477
>PRK08223 hypothetical protein; Validated
Probab=76.67 E-value=19 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCCH
Q psy8370 81 GKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQSS 114 (256)
Q Consensus 81 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s~ 114 (256)
...+|+=+|||. | ..+..|+..|..+++.+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 468999999983 4 467778888888888888773
No 478
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.56 E-value=25 Score=32.72 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCcc---------eEE-Ecccccc
Q psy8370 81 GKTRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKLD---------KCY-NVGIQDF 142 (256)
Q Consensus 81 ~~~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i~---------~~~-~~d~~~~ 142 (256)
+-.+|.-||+|+= ..+..++..|. .|+.+|.+++.++.+.++.... ...+. .+. ..|...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG- 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 3357889999954 34455556677 8999999999988877665321 01110 000 111111
Q ss_pred CCCCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 143 ~~~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
- ...|+|+=. +.+.+ +-..+++.++-++++|+.+|.-.
T Consensus 390 ---~--~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasn 427 (714)
T TIGR02437 390 ---F--DNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASN 427 (714)
T ss_pred ---h--cCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 247887764 44444 55678999999999998776653
No 479
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.55 E-value=18 Score=27.89 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCC-C-HhHHHHHHhcCCeEEEEeCC
Q psy8370 81 GKTRVLDVGAGI-G-RISKYLLAKHFDKIDLLEQS 113 (256)
Q Consensus 81 ~~~~vLDiG~G~-G-~~~~~l~~~~~~~v~~vD~s 113 (256)
...+|+=+|||. | ..+..|+..|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999983 4 46666777788789999888
No 480
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.47 E-value=18 Score=28.04 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCc
Q psy8370 82 KTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIK 150 (256)
Q Consensus 82 ~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~ 150 (256)
++++|-.|++.| .++..+++.|+ +|+.++.+....+.........+.++ .++..|+.+...... .+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNA-QAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcE-EEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567887776543 24444555666 89999988876665555444333345 677888765421100 125
Q ss_pred eeEEEechh
Q psy8370 151 YDVIWIQWV 159 (256)
Q Consensus 151 ~D~V~~~~~ 159 (256)
.|+++.+..
T Consensus 81 ~d~vi~~ag 89 (250)
T TIGR03206 81 VDVLVNNAG 89 (250)
T ss_pred CCEEEECCC
Confidence 798876653
No 481
>PLN02256 arogenate dehydrogenase
Probab=76.42 E-value=29 Score=28.47 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCCCCCeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEE
Q psy8370 78 SDPGKTRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 155 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~ 155 (256)
+.....+|.=||+|. |.++..+.+.|. +|+++|.++. .+.+. ..+ + .. ..+..+.. .. ..|+|+
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~----~~g--v-~~-~~~~~e~~--~~--~aDvVi 97 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAA----ELG--V-SF-FRDPDDFC--EE--HPDVVL 97 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHH----HcC--C-ee-eCCHHHHh--hC--CCCEEE
Confidence 345667898899873 345555544554 8999998863 22222 111 2 21 22222221 11 368887
Q ss_pred echhhhccCHHHHHHHHHHH-hhhcCCCcEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLC-KQILNKNGII 185 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~-~~~LkpgG~l 185 (256)
...- ......+++++ ...++|+..+
T Consensus 98 lavp-----~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 98 LCTS-----ILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred EecC-----HHHHHHHHHhhhhhccCCCCEE
Confidence 7532 23345566666 4556666533
No 482
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=76.37 E-value=12 Score=26.98 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCCHhHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCC--CCCCceeEEEech
Q psy8370 82 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQW 158 (256)
Q Consensus 82 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~--~~~~~~D~V~~~~ 158 (256)
..-|||+|=|.|+.--+|-+.... +|+++|-.-.+-..+. . ..- .++.+|+.+..+. ......-++.+..
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~---P---~~~-~~ilGdi~~tl~~~~~~g~~a~laHaD~ 101 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST---P---PEE-DLILGDIRETLPALARFGAGAALAHADI 101 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---------GG-GEEES-HHHHHHHHHHH-S-EEEEEE--
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC---C---chH-heeeccHHHHhHHHHhcCCceEEEEeec
Confidence 478999999999999999766544 8999987533211110 1 112 6788887766443 1112344444443
Q ss_pred hhhccCH--HHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 159 VLMFILD--EDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 159 ~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
..++-.. .....+-.-+..+|.|||.++-..
T Consensus 102 G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 102 GTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp --S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 3322211 122334445688899999888654
No 483
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.32 E-value=7.7 Score=32.57 Aligned_cols=99 Identities=18% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCCCCCeEEEEcCC-CCHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-c----cccc-cCCCCCC
Q psy8370 77 KSDPGKTRVLDVGAG-IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN-V----GIQD-FKPEDLN 148 (256)
Q Consensus 77 ~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~-~----d~~~-~~~~~~~ 148 (256)
....++.+||-.|+| .|..+..+++. |..+|+++|.+++-.+.+++. +.. ..+. . ++.+ ......
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~--~~i~~~~~~~~~~~~v~~~~~- 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GAT--DCVNPNDYDKPIQEVIVEITD- 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC--eEEcccccchhHHHHHHHHhC-
Confidence 355778899989875 34455555544 444799999999887777543 111 1111 1 1111 000001
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCC-cEEEEEec
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKDN 190 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 190 (256)
+.+|+|+-...- ...+....+.++++ |.+++...
T Consensus 254 ~g~d~vid~~G~--------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIGN--------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhhcCCCeEEEEec
Confidence 148888865221 13556667788886 98887543
No 484
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.31 E-value=28 Score=28.22 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=48.0
Q ss_pred eEEEEcCCCCH--hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcc----e-EEEccc-cccCCCCCCCceeEEE
Q psy8370 84 RVLDVGAGIGR--ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD----K-CYNVGI-QDFKPEDLNIKYDVIW 155 (256)
Q Consensus 84 ~vLDiG~G~G~--~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~----~-~~~~d~-~~~~~~~~~~~~D~V~ 155 (256)
+|+=+|+|.-. ++..|++.|. +|+.++. ++.++..++. +..+. . ...... .+..... ..+|+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi 73 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GLVIRSDHGDAVVPGPVITDPEELT--GPFDLVI 73 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----CeEEEeCCCeEEecceeecCHHHcc--CCCCEEE
Confidence 57778888543 4455555565 7999988 5555544321 11110 0 000000 1111111 2689887
Q ss_pred echhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 156 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 156 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...-- .....+++.+...+.++..++..
T Consensus 74 lavk~-----~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 74 LAVKA-----YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred EEecc-----cCHHHHHHHHHhhcCCCCEEEEe
Confidence 65332 23456778888888887766554
No 485
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.24 E-value=18 Score=28.37 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCC---HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 81 GKTRVLDVGAGIG---RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
+++++|=.|+..| .++..|+++|+ +|++++.++...+...+.+...+.++ .++.+|+.+...... .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKA-IGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceE-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567886665433 24444555666 79999998877666666655444445 677888766432110 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+|+.+..
T Consensus 84 ~~d~vi~~ag 93 (262)
T PRK13394 84 SVDILVSNAG 93 (262)
T ss_pred CCCEEEECCc
Confidence 5798887654
No 486
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=75.58 E-value=11 Score=31.05 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCCC-CHhHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcc---ccccCCCCCCCcee
Q psy8370 78 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKPEDLNIKYD 152 (256)
Q Consensus 78 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d---~~~~~~~~~~~~~D 152 (256)
...++.+||-.|+|. |..+..++.. |...+++++.++...+.+++. +. . .++... ...+........+|
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~-~-~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GA-D-DTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC-C-EEecCccccHHHHHHHhCCCCCC
Confidence 456778898888654 5555555544 443499998888766665432 11 1 222111 11111001112489
Q ss_pred EEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEEe
Q psy8370 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189 (256)
Q Consensus 153 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 189 (256)
+++.... . ...+..+.+.|+++|.++...
T Consensus 230 ~vld~~g------~--~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAAG------S--PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECCC------C--HHHHHHHHHHhhcCCEEEEEc
Confidence 9986521 0 135667788999999988753
No 487
>PRK06181 short chain dehydrogenase; Provisional
Probab=75.31 E-value=19 Score=28.32 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=43.6
Q ss_pred CeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CCce
Q psy8370 83 TRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~~~ 151 (256)
.+||-.|+..|. ++..+++.|+ +|++++.++...+...+.+...+.++ .++..|+.+...... .+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEA-LVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 467766654332 3334445566 89999998776665555444444445 677788766431100 1257
Q ss_pred eEEEechh
Q psy8370 152 DVIWIQWV 159 (256)
Q Consensus 152 D~V~~~~~ 159 (256)
|+|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 88887643
No 488
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.29 E-value=9.6 Score=28.48 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=55.8
Q ss_pred eEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------CCCc---------ce-EEEccccccCCC
Q psy8370 84 RVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CDKL---------DK-CYNVGIQDFKPE 145 (256)
Q Consensus 84 ~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~i---------~~-~~~~d~~~~~~~ 145 (256)
+|.-||+|+= .++..++..|+ +|+.+|.+++.++.+++++... ...+ .. -...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--
Confidence 3566888743 24445555676 9999999999998888776531 0111 01 1233443332
Q ss_pred CCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 146 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 146 ~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..|+|+=.- .+.+ +....+++++.+.+.|+..|...
T Consensus 78 ----~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp ----TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE-
T ss_pred ----hhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEec
Confidence 368777543 2333 55678999999999998877764
No 489
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.22 E-value=15 Score=28.53 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
.++++|=.|++.|. ++..++++|+ +|++++-++. +.+.+.....+..+ .++..|+.+..... ..+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRF-LSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCce-EEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888886552 5556666677 8988887652 23333333333345 67778876543211 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 6899887643
No 490
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.22 E-value=33 Score=26.63 Aligned_cols=76 Identities=21% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCeEEEEcCCCCH---hHHHHHHhcCCeEEEE-eCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------CC
Q psy8370 82 KTRVLDVGAGIGR---ISKYLLAKHFDKIDLL-EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------NI 149 (256)
Q Consensus 82 ~~~vLDiG~G~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~~ 149 (256)
++++|=.|++.|. ++..++++|+ +|+.+ +-++...+...+.....+.++ .++.+|+.+...... .+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKA-LAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeE-EEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678877765432 4444555566 56553 445554444444444433445 677788765431100 13
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 82 ~id~vi~~ag 91 (250)
T PRK08063 82 RLDVFVNNAA 91 (250)
T ss_pred CCCEEEECCC
Confidence 5799988753
No 491
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.18 E-value=21 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=25.4
Q ss_pred CceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+|+|+...=-. +....++.+.+.+.|+..+++.
T Consensus 66 ~~~D~viv~vKa~-----~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 66 GPYDLVIVAVKAY-----QLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp STESEEEE-SSGG-----GHHHHHHHHCTGEETTEEEEEE
T ss_pred CCCcEEEEEeccc-----chHHHHHHHhhccCCCcEEEEE
Confidence 3799999873222 3356888899999999888775
No 492
>PRK08589 short chain dehydrogenase; Validated
Probab=75.12 E-value=19 Score=28.67 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCC
Q psy8370 81 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 149 (256)
Q Consensus 81 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~ 149 (256)
+++++|=.|++.|. ++..++++|+ +|++++.++ ..+...+.+...+.++ .++..|+.+..... ..+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~-~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE-AVSETVDKIKSNGGKA-KAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH-HHHHHHHHHHhcCCeE-EEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45678888876653 5555666776 899999884 3444444444333345 67777876542110 013
Q ss_pred ceeEEEechh
Q psy8370 150 KYDVIWIQWV 159 (256)
Q Consensus 150 ~~D~V~~~~~ 159 (256)
..|+++.+..
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6899887754
No 493
>PLN02712 arogenate dehydrogenase
Probab=75.11 E-value=33 Score=31.59 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCC--CHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
....+|.=||+|. |.++..+...|. +|+++|.+... +.+++ .+ + .. ..+..+... . ..|+|+..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~-~~A~~----~G--v-~~-~~d~~e~~~--~--~aDvViLa 115 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS-LAARS----LG--V-SF-FLDPHDLCE--R--HPDVILLC 115 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHHH----cC--C-EE-eCCHHHHhh--c--CCCEEEEc
Confidence 4456899999874 445566655565 89999988542 22221 11 2 22 223332211 1 36888876
Q ss_pred hhhhccCHHHHHHHHHHHh-hhcCCCcE
Q psy8370 158 WVLMFILDEDIIKFLNLCK-QILNKNGI 184 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~-~~LkpgG~ 184 (256)
- +......+++.+. ..++||..
T Consensus 116 v-----P~~~~~~vl~~l~~~~l~~g~i 138 (667)
T PLN02712 116 T-----SIISTENVLKSLPLQRLKRNTL 138 (667)
T ss_pred C-----CHHHHHHHHHhhhhhcCCCCeE
Confidence 3 3334455666654 45666653
No 494
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.02 E-value=14 Score=32.93 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCCCHhHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEccccccCCCC---CCCce
Q psy8370 81 GKTRVLDVGAGIGRISKYLLAK----HFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPED---LNIKY 151 (256)
Q Consensus 81 ~~~~vLDiG~G~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~--~~~i~~~~~~d~~~~~~~~---~~~~~ 151 (256)
.+++||-- .|+|.++..++++ ++++++.+|.++..+-..+..++.. ..++ .++-+|+.+...-. ..-+.
T Consensus 249 ~gK~vLVT-GagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~-~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVT-GGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKL-RFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEe-CCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcce-EEEecccccHHHHHHHHhcCCC
Confidence 46777744 5677777666554 5669999999998887777777653 2356 78888988764311 11268
Q ss_pred eEEEechhhhccCH
Q psy8370 152 DVIWIQWVLMFILD 165 (256)
Q Consensus 152 D~V~~~~~l~~~~~ 165 (256)
|+|+-...+-|+|-
T Consensus 327 d~VfHAAA~KHVPl 340 (588)
T COG1086 327 DIVFHAAALKHVPL 340 (588)
T ss_pred ceEEEhhhhccCcc
Confidence 99999988888865
No 495
>PRK06949 short chain dehydrogenase; Provisional
Probab=74.88 E-value=21 Score=27.97 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCCC--------C
Q psy8370 80 PGKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL--------N 148 (256)
Q Consensus 80 ~~~~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~~--------~ 148 (256)
..+++||-.|++.|. ++..+++.|+ +|++++.+++.++.....+.....++ .++..|+.+...... .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAA-HVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcE-EEEEecCCCHHHHHHHHHHHHHhc
Confidence 346788888854432 3444445566 79999998887766665554433345 677777764321000 1
Q ss_pred CceeEEEechh
Q psy8370 149 IKYDVIWIQWV 159 (256)
Q Consensus 149 ~~~D~V~~~~~ 159 (256)
+.+|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 35788887654
No 496
>PRK05693 short chain dehydrogenase; Provisional
Probab=74.86 E-value=32 Score=27.29 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=38.6
Q ss_pred CeEEEEcCCCCH---hHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEccccccCCCC--------CCCce
Q psy8370 83 TRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNIKY 151 (256)
Q Consensus 83 ~~vLDiG~G~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~--------~~~~~ 151 (256)
+++|=.|++.|. ++..+++.|+ +|++++.++..++.... ..+ .++..|+.+..... ..+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~------~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA------AGF-TAVQLDVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH------CCC-eEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 356766754432 3444445566 89999988765443321 124 56667765532110 01368
Q ss_pred eEEEechh
Q psy8370 152 DVIWIQWV 159 (256)
Q Consensus 152 D~V~~~~~ 159 (256)
|+|+.+..
T Consensus 74 d~vi~~ag 81 (274)
T PRK05693 74 DVLINNAG 81 (274)
T ss_pred CEEEECCC
Confidence 99987754
No 497
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=74.82 E-value=19 Score=30.96 Aligned_cols=96 Identities=8% Similarity=0.085 Sum_probs=52.0
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEcccccc------------CCCCCC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------------KPEDLN 148 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~~~d~~~~------------~~~~~~ 148 (256)
.+|.=||.|.- .++..|+..|+ +|+++|.++..++..+.. .+ .+...++.+. .....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g------~~-~~~e~~l~~~l~~~~~~g~l~~~~~~~- 74 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRG------EI-HIVEPDLDMVVKTAVEGGYLRATTTPE- 74 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCC------CC-CcCCCCHHHHHHHHhhcCceeeecccc-
Confidence 46778888854 34455556676 899999999877753211 01 1111111000 00011
Q ss_pred CceeEEEechhhh----ccCH-HHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 149 IKYDVIWIQWVLM----FILD-EDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 149 ~~~D~V~~~~~l~----~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
..|+|+...--. .-++ ......++.+.+.+++|..++..
T Consensus 75 -~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 75 -PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred -cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 368887653211 0000 34556778888889887666553
No 498
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.81 E-value=23 Score=33.09 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=60.4
Q ss_pred CeEEEEcCCCC--HhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCcc---------eEE-EccccccCC
Q psy8370 83 TRVLDVGAGIG--RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC------DKLD---------KCY-NVGIQDFKP 144 (256)
Q Consensus 83 ~~vLDiG~G~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~i~---------~~~-~~d~~~~~~ 144 (256)
.+|--||+|+= ..+..++..|. .|+.+|.+++.++.+.+++...- ..+. .+. ..|+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh--
Confidence 57899999853 34455556677 89999999999988777654210 1110 000 1122111
Q ss_pred CCCCCceeEEEechhhhccCHHHHHHHHHHHhhhcCCCcEEEEE
Q psy8370 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 145 ~~~~~~~D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 188 (256)
...|+|+=. +.+.+ +-..++++++-++++|+.+|...
T Consensus 413 ----~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 413 ----KNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred ----ccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEc
Confidence 146777643 34444 55678999999999999877653
No 499
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.68 E-value=40 Score=26.55 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCCeEEEEcCC-CCH----hHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEccccccCCCC-------
Q psy8370 81 GKTRVLDVGAG-IGR----ISKYLLAKHFDKIDLLEQSS--KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED------- 146 (256)
Q Consensus 81 ~~~~vLDiG~G-~G~----~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~i~~~~~~d~~~~~~~~------- 146 (256)
.++++|-.|+| ++. .+..+++.|+ +|+.++.+. +..+...+.+ +... .++..|+.+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~---~~~~-~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRL---PEPA-PVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhc---CCCC-cEEeCCCCCHHHHHHHHHHHH
Confidence 45788989983 333 4444555676 788887653 3333332222 1234 56777876543211
Q ss_pred -CCCceeEEEechhhhc-------c---CHHHH-----------HHHHHHHhhhcCCCcEEEEE
Q psy8370 147 -LNIKYDVIWIQWVLMF-------I---LDEDI-----------IKFLNLCKQILNKNGIIIIK 188 (256)
Q Consensus 147 -~~~~~D~V~~~~~l~~-------~---~~~~~-----------~~~l~~~~~~LkpgG~l~i~ 188 (256)
..+.+|+++.+..... + +.+++ -.+.+.+.+.|+++|.++..
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 0247899988754321 1 11221 12445566777778877654
No 500
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.66 E-value=17 Score=30.37 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCC-CCHhHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE-EccccccCCCCCCCceeEEEec
Q psy8370 80 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGIQDFKPEDLNIKYDVIWIQ 157 (256)
Q Consensus 80 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~i~~~~-~~d~~~~~~~~~~~~~D~V~~~ 157 (256)
.++.+|+-+|+| .|..+..+++....++++++.+++..+.+.+.+ +.. ..+ ..+......... .+|+|+-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~---Ga~--~~i~~~~~~~~~~~~~--~~D~vid~ 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHL---GAD--DYLVSSDAAEMQEAAD--SLDYIIDT 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhc---CCc--EEecCCChHHHHHhcC--CCcEEEEC
Confidence 467788877654 344555554443236888887776544443322 211 111 111111111112 47888764
Q ss_pred hhhhccCHHHHHHHHHHHhhhcCCCcEEEEEec
Q psy8370 158 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190 (256)
Q Consensus 158 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 190 (256)
.. . ...++.+.+.++++|.++....
T Consensus 252 ~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 252 VP-----V---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CC-----c---hHHHHHHHHHhccCCEEEEECC
Confidence 22 0 1356667788999999988643
Done!