RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8370
(256 letters)
>gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline
di-methyltransferase. This protein is expressed in the
tail neuron PVT and in uterine cells in C. elegans
[worm-base]. In Saccharomyces cerevisiae this is AdoMet
dependent proline di-methyltransferase. This enzyme
catalyzes the di-methylation of ribosomal proteins Rpl12
and Rps25 at N-terminal proline residues. The
methyltransferases described here specifically recognise
the N-terminal X-Pro-Lys sequence motif, and they may
account for nearly all previously described eukaryotic
protein N-terminal methylation reactions. A number of
other yeast and human proteins also share the
recognition motif and may be similarly modified. As with
other methyltransferases, this family carries the
characteristic GxGxG motif.
Length = 217
Score = 220 bits (562), Expect = 2e-72
Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV---LDVG 89
YS+ Y+ V T+DGML GY +SD+D+ S FL L ++ PGK R LD G
Sbjct: 6 YSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRL--LRERLPGKRRHLVALDCG 63
Query: 90 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 149
AGIGR++K LL F K+DL+E F+ +AKE + + K+ + VG+QDF PE+
Sbjct: 64 AGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKKKVGNFFCVGLQDFTPEEG-- 121
Query: 150 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRS 209
+YD+IWIQW + + DED++ FL CK L NG I++K+NVA +D EDSSV RS
Sbjct: 122 RYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQ-NGFVFDKEDSSVTRS 180
Query: 210 LPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
F LF KA LK V E+ G+P+ L+ + M+ALK
Sbjct: 181 EAYFKKLFKKAGLKLVAEERQKGLPQELYPVKMYALK 217
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 54.2 bits (131), Expect = 9e-10
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD- 141
RVLD+G G G ++ L ++ ++ S + +E A+E KL +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA-----KLALGPRITFVQG 58
Query: 142 --FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
DL +D ++I +L+ L+ +L G +++
Sbjct: 59 DAPDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 53.5 bits (129), Expect = 1e-09
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 86 LDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
LD+G G G + + LL + ++ S +E A E + + + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA-I 59
Query: 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 185
+ +DV+ VL + D L +++L G++
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 53.6 bits (129), Expect = 2e-09
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+G G G ++ L + ++ ++ S +E A++ L V D +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAE 57
Query: 144 --PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
P + + +DVI L ++ ED+ +FL +++L G++++
Sbjct: 58 ELPPEADESFDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 50.7 bits (122), Expect = 1e-08
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 145
LDVG G G +++ L + ++ ++ S + + A++ E
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAE 49
Query: 146 DLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
DL +DV+ VL + D + L ++L G ++I
Sbjct: 50 DLPFPDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
>gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine
N1-methyltranferase. Ovothiol A is
N1-methyl-4-mercaptohistidine. In the absence of
S-adenosylmethione, a methyl donor, the intermediate
produced is 4-mercaptohistidine. In both Erwinia
tasmaniensis and Trypanosoma cruzi, a protein occurs
with 5-histidylcysteine sulfoxide synthase activity, but
these two enzymes and most homologs share an additional
C-terminal methyltransferase domain. Thus OvoA may be a
bifunctional enzyme with 5-histidylcysteine sulfoxide
synthase and 4-mercaptohistidine N1-methyltranferase
activity. This model describes C-terminal putative
4-mercaptohistidine N1-methyltranferase domain
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 242
Score = 48.0 bits (115), Expect = 1e-06
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 40/138 (28%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------------------- 120
+ R LD+G +GR S + LA++FD++D ++ S++FI A
Sbjct: 41 SRKRALDIGCAVGRAS-FELARYFDEVDGIDFSARFIRPAVALKERGSLRYALKEEGELV 99
Query: 121 --KEEILKDCDKLDKCY-NVGIQDFKPED-LNIK-----YDVIWIQWVLMFILDE--DII 169
KE L D LD+ V F D N+K YD+I + +LD D
Sbjct: 100 SFKEVTLSDL-GLDEVRDRV---SFFQGDACNLKPHFTGYDLI----LAANLLDRLYDPA 151
Query: 170 KFLNLCKQILNKNGIIII 187
FL+ + LN G+++I
Sbjct: 152 AFLSSIHERLNPGGLLVI 169
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 43.7 bits (100), Expect = 3e-05
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 5/133 (3%)
Query: 80 PGKTRVLDVGAGIGRISKYL-LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
PG VLD+G G GR++ L + ++ S + + A+ L
Sbjct: 47 PGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD 106
Query: 139 IQDFK-PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197
P + + +D++ VL + K L ++L G +++ D + G+
Sbjct: 107 ALGGVLPFEDSASFDLVISLLVLHLL---PPAKALRELLRVLKPGGRLVLSDLLRDGLLE 163
Query: 198 EYDDEDSSVVRSL 210
+
Sbjct: 164 GRLAALLGFGDPV 176
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 43.4 bits (103), Expect = 4e-05
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 72 LYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD 129
L + PGK LD+G G GR S YL FD +D+ +QS + +++ E+ +
Sbjct: 113 LEAVQTVKPGKA--LDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK-----E 165
Query: 130 KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIII 186
L+ G+ D + +YD I VLMF+ E IIK N+ + N G +
Sbjct: 166 NLN--IRTGLYDINSASIQEEYDFILSTVVLMFLNRERIPAIIK--NMQEHT-NPGGYNL 220
Query: 187 I 187
I
Sbjct: 221 I 221
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 40.7 bits (95), Expect = 4e-04
Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G IS I+ + + LS + + S +VLD+G+G+G KY+ K+ + ++
Sbjct: 29 GEDYISSGGIEATTKILSDIELNENS-----KVLDIGSGLGGGCKYINEKYGAHVHGVDI 83
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
K + AK + ++ +DF PE+ +D+I+ + ++ + D K
Sbjct: 84 CEKMVNIAKLRNSDKNKIEFEANDILKKDF-PEN---TFDMIYSRDAILHLSYADKKKLF 139
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L NGI++I D A ++N +D+E + ++ + ++ L N + V
Sbjct: 140 EKCYKWLKPNGILLITDYCADKIEN-WDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
++ ++ L ++ + L+ K++
Sbjct: 199 VAKDISDYWLELLQVELKKLEEKKEE 224
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 39.0 bits (91), Expect = 6e-04
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 34/153 (22%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
RVLD+G G G + + L + FD + ++ S + D L
Sbjct: 25 RVLDIGCGTGILLRLLRERGFD-VTGVDPSPAAVLIFSLFDAPDPAVLAG---------- 73
Query: 144 PEDLNIKYDVIW----IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
KYD+I ++ + D L +++L G+++I +A +
Sbjct: 74 ------KYDLITAFEVLEHL------PDPPALLQQLRELLKPGGVLLISTPLADDDARLF 121
Query: 200 DDEDSSVVR-------SLPQFCLLFSKANLKCV 225
+ R S L KA + V
Sbjct: 122 ANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
>gnl|CDD|218506 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 39.1 bits (91), Expect = 0.001
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 51 LNGYSSISDLDIQTSNQFLSSLYCQKKS-DPGKT--RVLDVGAGIGRISKYLLAKHFDKI 107
+NG+ + I + QF L G+ +LD+GAG G I+ +A F+++
Sbjct: 61 INGFLGRGSMFIFSEEQFRKLLVIGGFQPASGQEPVTLLDLGAGDGEITLR-MAPTFEEV 119
Query: 108 DLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQWVLMFILDE 166
E S ++ K+ K YNV +++ D+N D+I + + +LD
Sbjct: 120 YATELSWTMRDRLKK----------KNYNVLTEIEWQETDVN--LDLI----LCLNLLDR 163
Query: 167 --DIIKFLNLCKQILNKNGIIII 187
D K L L NG +I+
Sbjct: 164 CFDPFKLLEDIHLALAPNGRVIV 186
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 36.9 bits (86), Expect = 0.001
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
+LD+G G GR+ + L + ++ S + +E AKE + + D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----RDKGPKVRFVVADA-- 54
Query: 145 EDL---NIKYDVIWIQWVLMFIL-DEDIIKFLNLCKQILNKNG 183
DL +D++ + + L + + L ++L G
Sbjct: 55 RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 38.6 bits (90), Expect = 0.002
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLL--AKHFDKI 107
ML+ S SDLD + + LS L GK+ VL++GAGIGR + L A +
Sbjct: 13 MLD--SKASDLDKEERPEILSLL----PPYEGKS-VLELGAGIGRFTGELAKKAGQVIAL 65
Query: 108 DLLEQSSKFIEQAKEEILKDCDKLDK--CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 165
D +E K K E + K K C +V D D ++ D+I+ W+LM++ D
Sbjct: 66 DFIESVIK-----KNESINGHYKNVKFMCADVTSPDLNISDGSV--DLIFSNWLLMYLSD 118
Query: 166 EDI 168
+++
Sbjct: 119 KEV 121
Score = 27.8 bits (62), Expect = 5.9
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 10/52 (19%)
Query: 62 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD----KIDL 109
++T+ +F+ L PG+ +VLDVG GIG Y +A++FD IDL
Sbjct: 252 LETTKEFVDKL----DLKPGQ-KVLDVGCGIGGGDFY-MAENFDVHVVGIDL 297
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 36.9 bits (86), Expect = 0.005
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 21/158 (13%)
Query: 68 FLSSLYCQKKSDPGKTRVLDVGAGIGR----ISKYLLAKHFDKIDLLEQSSKFIEQAKEE 123
L SL D RVLD+G+G G ++ ++ L + F+ + K+E
Sbjct: 54 ILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE 113
Query: 124 ILKDCDKLD--KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 181
+ L+ + + ++F E +YDV+ + V + L LC +L
Sbjct: 114 L-----GLENVEIVHGRAEEFGQEKK--QYDVVTSRAV------ASLNVLLELCLPLLKV 160
Query: 182 NGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 219
G + K+E + + +++ Q +FS
Sbjct: 161 GGGFLAY--KGLAGKDELPEAEKAILPLGGQVEKVFSL 196
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 36.5 bits (85), Expect = 0.006
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 68 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEIL 125
++ + + PG RVLDVG G G +S+ L L ID E K IE AK L
Sbjct: 47 YIREVARLRFDLPGL-RVLDVGCGGGILSEPLARLGASVTGIDASE---KPIEVAKLHAL 102
Query: 126 KDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 184
+ +D Y ++D ++DV+ VL + D + FL C +++ GI
Sbjct: 103 ESGVNID--YRQATVEDL--ASAGGQFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGI 156
Query: 185 III 187
+ +
Sbjct: 157 LFL 159
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 34.2 bits (79), Expect = 0.043
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 74 CQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKD-CDK 130
+ K RVLDVG G G +S+ L + ID E++ IE AK KD K
Sbjct: 38 RKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEEN---IEVAKLHAKKDPLLK 94
Query: 131 LDKCYNV-GIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 187
++ Y ++D E +DV+ M +L+ D F+ C Q+L GI+
Sbjct: 95 IE--YRCTSVEDL-AEKGAKSFDVV----TCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147
>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 34.3 bits (79), Expect = 0.046
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 24/119 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQ 140
RVL +G G G + +L KH +I ++E IE A++ + D + I
Sbjct: 79 RVLIIGGGDGGTLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID 137
Query: 141 DFKP--EDLNIKYDVIWIQWVLMFILD----EDIIK------FLNLCKQILNKNGIIII 187
D D K+DVI I+D + F C++ L ++GI +
Sbjct: 138 DGVEFLRDCEEKFDVI--------IVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 33.2 bits (76), Expect = 0.059
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDL--LEQSSKFIEQAKEEILKDCDKLDKC--YN 136
+VLD+G G G ++ L K ++ ++ S + IE+AKE K +
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK--LGYENVEFIQ 60
Query: 137 VGIQDFKPEDLN-IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
I++ L +DV+ VL D K L ++L G++I+
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLN--HLPDPDKVLEEIIRVLKPGGVLIV 110
>gnl|CDD|202783 pfam03848, TehB, Tellurite resistance protein TehB.
Length = 192
Score = 33.3 bits (76), Expect = 0.063
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
PGK LD+G G GR S +L +D +D E S ++ KE+ + LD
Sbjct: 31 PGKA--LDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEK-----ENLD--IPT 81
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDI 168
+ D ++ YD I VLMF+ E I
Sbjct: 82 ALYDINSASIDENYDFILSTVVLMFLQAERI 112
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 32.6 bits (75), Expect = 0.13
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 21 FTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQ-TSNQFLSSLYCQKKSD 79
F + KD + +V + + V D M + + + + L SL K D
Sbjct: 1 FKMVAKDEKQE---KVQKVFDKVAKKYDLM----NDLMSFGLHRLWRRALISLLGIKPGD 53
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
+VLDV G G ++ LLAK ++ L+ S +E A+E KL K
Sbjct: 54 ----KVLDVACGTGDMA-LLLAKSVGTGEVVGLDISESMLEVARE-------KLKKKGVQ 101
Query: 138 GIQ 140
++
Sbjct: 102 NVE 104
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 32.6 bits (75), Expect = 0.14
Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 33/148 (22%)
Query: 51 LNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDL 109
Y + + + + + L+ L + P VLD+G G G +++ LL + +
Sbjct: 6 AKTYDRHAKIQREMAKRLLALLKEKGIFIP--ASVLDIGCGTGYLTRALLKRFPQAEFIA 63
Query: 110 LEQSSKFIEQAKEE-------ILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW----IQW 158
+ S+ + QAK + I D +KL + +D+I +QW
Sbjct: 64 NDISAGMLAQAKTKLSENVQFICGDAEKLPLEDS-------------SFDLIVSNLALQW 110
Query: 159 VLMFILDEDIIKFLNLCKQILNKNGIII 186
+D+ + L+ ++L G++
Sbjct: 111 C------DDLSQALSELARVLKPGGLLA 132
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 32.6 bits (75), Expect = 0.17
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 51 LNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109
L G S LD+ S LS+L + K +VLDVG G G +S LA+H KI L
Sbjct: 172 LPGVFSRDGLDV-GSQLLLSTL-----TPHTKGKVLDVGCGAGVLSAV-LARHSPKIRL 223
>gnl|CDD|221146 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 370
Score = 32.5 bits (74), Expect = 0.21
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 28 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQ--TSNQFLSSLYCQKKSDPGKTRV 85
+R+H + + P ++G L G S +SDL + ++ + L SL PG +
Sbjct: 182 LSRTHLTPAQKQVYLSPGGLNGTLTGQSYLSDLQVDLTSAGELLVSL--VTMVYPGLFVL 239
Query: 86 LDVG 89
+D+
Sbjct: 240 VDLS 243
>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase. This family
includes a range of O-methyltransferases. These enzymes
utilise S-adenosyl methionine.
Length = 239
Score = 32.2 bits (74), Expect = 0.21
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 25/117 (21%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
G + ++DVG G G ++ ++ + FD I A D+++
Sbjct: 100 SGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFD-------LPHVIADAPSA-----DRVE 147
Query: 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
VG F+ + D I ++WVL DED +K L C + L G +I+ +
Sbjct: 148 ---FVGGDFFES---VPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVE 198
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 31.7 bits (72), Expect = 0.28
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
Y ++L Q+++ L+ L T VLD G G G +S+Y + + L+
Sbjct: 19 HYEQHAELQRQSADALLAML-----PQRKFTHVLDAGCGPGWMSRYWRERGSQ-VTALDL 72
Query: 113 SSKFIEQAKE 122
S + QA++
Sbjct: 73 SPPMLAQARQ 82
>gnl|CDD|188054 TIGR00477, tehB, tellurite resistance protein TehB. Part of a
tellurite-reducing operon tehA and tehB [Cellular
processes, Toxin production and resistance].
Length = 195
Score = 31.4 bits (71), Expect = 0.31
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
P KT LD+G G GR S YL +D D E S F+ + KE+ + L+ +
Sbjct: 31 PCKT--LDLGCGQGRNSLYLSLLGYDVTAWDHNENSIAFVNETKEK-----ENLN--LST 81
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFI 163
+ D ++ YD I V MF+
Sbjct: 82 ALYDINAANIQENYDFIVSTVVFMFL 107
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 31.4 bits (72), Expect = 0.33
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEI-LKDCDKLDKCYN 136
P K R+LD+GAG G + LLA+ +K I +E + E A+ + L ++ +
Sbjct: 43 PKKGRILDLGAGNGALG-LLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101
Query: 137 VGIQDFKPEDLNIKYDVI 154
I++F + +D+I
Sbjct: 102 ADIKEFLKALVFASFDLI 119
>gnl|CDD|221347 pfam11968, DUF3321, Putative methyltransferase (DUF3321). This
family is broadly conserved, being found in fungi,
plants, arthropods and up to primates. it may be a
methyltransferase.
Length = 220
Score = 31.0 bits (71), Expect = 0.40
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 69 LSSLYCQKKSDPGKTRVLDVGA--GIGRISKYLLAKHFD--KIDLLEQSSKFIEQ 119
L L + K GK R L+VGA SK FD +IDL Q ++Q
Sbjct: 40 LKPLNVRLKLGEGKLRALEVGALSTKNACSKS---GLFDVTRIDLNSQHPGILQQ 91
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 31.0 bits (71), Expect = 0.42
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 127
D VL++G G G ++ LAK K+ +E + E +++ +
Sbjct: 27 DTDGDPVLEIGPGKGALTDE-LAKRAKKVYAIELDPRLAEFLRDDEIAA 74
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 31.1 bits (71), Expect = 0.50
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 81 GKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKE 122
G VLD+G G G++ + LLA K F++I ++ S++ +E A
Sbjct: 282 GARSVLDLGCGEGKLLRLLLAEKQFERIAGVDVSARELEIAAR 324
>gnl|CDD|183040 PRK11207, PRK11207, tellurite resistance protein TehB; Provisional.
Length = 197
Score = 30.5 bits (69), Expect = 0.66
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
PGKT LD+G G GR S YL A FD + +++ I A E +K + LD + +
Sbjct: 31 PGKT--LDLGCGNGRNSLYLAANGFD-VTAWDKNPMSI--ANLERIKAAENLDNLHTA-V 84
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDII 169
D + +YD I VLMF L+ I
Sbjct: 85 VDLNNLTFDGEYDFILSTVVLMF-LEAKTI 113
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 30.3 bits (68), Expect = 1.0
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 85 VLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILK 126
++D+ A + R+SK L + +D + S KF+E+A E++++
Sbjct: 884 MVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVR 927
>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 255
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
Q ++ L+ L P RVLD G G G+ + LA+ ++ L + S++ I++AK+
Sbjct: 32 QDLDRLLAEL------PPRPLRVLDAGGGEGQTAI-KLAELGHQVILCDLSAEMIQRAKQ 84
Query: 123 EI 124
Sbjct: 85 AA 86
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 29.9 bits (68), Expect = 1.0
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFD----KIDLLEQSSKFIEQ-AKEEILKDCDKLDK 133
PG T +LD+G G G ++ Y A+ + + L E+ + E+ L+D
Sbjct: 71 KPGMT-LLDIGCGWGGLAIY-AAEEYGVTVVGVTLSEEQLAYAEKRIAARGLED------ 122
Query: 134 CYNVGI--QDFKPEDLNIKYDVIWIQWVLMF--ILDEDIIKFLNLCKQILNKNGIIII 187
NV + QD+ D +D I V MF + E+ F +L G +++
Sbjct: 123 --NVEVRLQDY--RDFEEPFDR--IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174
>gnl|CDD|218199 pfam04665, Pox_A32, Poxvirus A32 protein. The A32 protein is
thought to be involved in viral DNA packaging.
Length = 241
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 166 EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YDDEDSSVV 207
+ +++ +N+ + K + II+D+V + YD D V+
Sbjct: 176 KLLLRAVNIMRSAEKKRRVYIIEDSVFCEGEQRICYDSADERVI 219
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKE 122
+VLD+G G G + L + D ++ +++ +++ +E A+
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA 73
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 30.4 bits (68), Expect = 1.2
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 26/86 (30%)
Query: 26 KDGNRSHYSEVT--EYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLS-----------SL 72
+D +RSH E T E+Y+ Y + DL T + F +
Sbjct: 314 EDADRSHNPEFTSCEFYA-----------AYHTYEDLMPMTEDIFRQLAMRVNGTTVVQI 362
Query: 73 YCQKKSDPGKTRVLDVGAGIGRISKY 98
Y + G +D+G R+S Y
Sbjct: 363 YPENAH--GNPVTVDLGKPFRRVSVY 386
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 30.0 bits (68), Expect = 1.3
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 82 KTRVLDVGAGIGRISKYL-LAKHFDKIDLLEQSSKFIE 118
T VL VG GIG ++ L LA+ K+ LLEQ+++ E
Sbjct: 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE 41
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 29.1 bits (66), Expect = 1.4
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 83 TRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSK---FIEQAKEEILKDCDKLDKCYNV 137
RV+D+G+G G LA K+ LLE + K F+ + K E+ L+ NV
Sbjct: 44 KRVIDIGSGAG-FPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-----GLN---NV 94
Query: 138 GIQDFKPEDLN--IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186
I + + ED ++D+I + + + L L +L G +
Sbjct: 95 EIVNGRAEDFQHEEQFDIITSRAL------ASLNVLLELTLNLLKVGGYFL 139
>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase. Spermine
and spermidine are polyamines. This family includes
spermidine synthase that catalyzes the fifth (last) step
in the biosynthesis of spermidine from arginine, and
spermine synthase.
Length = 240
Score = 29.6 bits (67), Expect = 1.4
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKC 134
S P +VL +G G G + ++ KH +KI L+E K IE +K+ + D
Sbjct: 72 SHPNPKKVLIIGGGDGGALREVV-KHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPR 130
Query: 135 YNVGIQDFKP--EDLNIKYDVIWIQWVLMFILDE-DII---------KFLNLCKQILNKN 182
V I D +D +++DVI I+D D + +F +L K+ L ++
Sbjct: 131 VKVVIGDGFKFLKDYLVEFDVI--------IVDSTDPVGPAENLFSKEFYDLLKRALKED 182
Query: 183 GIII 186
G+ +
Sbjct: 183 GVFV 186
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 84 RVLDVGAGIGRISKYLLAK 102
R++DVG GIG S+YL K
Sbjct: 121 RIVDVGCGIGGSSRYLARK 139
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 29.8 bits (67), Expect = 1.6
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 VLDVGAGI-GRISKYLLAKHFDKIDLLEQ 112
V+ VGAGI G + Y LAKH K LLEQ
Sbjct: 3 VIVVGAGIMGCFAAYHLAKHGKKTLLLEQ 31
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 29.1 bits (66), Expect = 1.7
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 37/131 (28%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
RVL+VG G G ++ +D+ + +E AK KL+ N G++
Sbjct: 26 RVLEVGTGSGIVAIVAAKNGKKVVGVDI---NPYAVECAKCNA-----KLNNIRNNGVE- 76
Query: 142 FKPEDL-----NIKYDVI--------------WIQWVLMFILD------EDIIKFLNLCK 176
DL K+DVI W W L + L E I +FL+
Sbjct: 77 VIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDW-LNYALSGGKDGREVIDRFLDEVG 135
Query: 177 QILNKNGIIII 187
+ L G I++
Sbjct: 136 RYLKPGGRILL 146
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 29.0 bits (66), Expect = 2.2
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 27/130 (20%)
Query: 77 KSDPGKTRVLDVGAGIGRI----SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
K VLDVG G G I + L AK +D+ Q+ +E A+E +
Sbjct: 115 KLVLPGKTVLDVGCGSG-ILAIAAAKLGAKKVLAVDIDPQA---VEAARENAELN----- 165
Query: 133 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 192
V + + P+ ++K DVI + IL +++ ++L G +I+
Sbjct: 166 ---GVELNVYLPQG-DLKADVI-----VANILANPLLELAPDLARLLKPGGRLIL----- 211
Query: 193 SGVKNEYDDE 202
SG+ E DE
Sbjct: 212 SGILEEQADE 221
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 28.4 bits (64), Expect = 2.6
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 66 NQFLSSLYCQKKSDPGKTRVLDVGAGIG----RISKYLLAKHFDKIDLLEQSSKFIEQAK 121
L SL + D + +V DVG+G G ++ K ++ L + F+E+ K
Sbjct: 33 RHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELK 92
Query: 122 EEILKDCDKLDKCYNVGIQDFKPEDLNIK--YDVIWIQWVLMFILDEDIIKFLNLCKQIL 179
+E+ L+ NV I + E+ + YDVI + V + + +L
Sbjct: 93 KEL-----NLE---NVTIVHARAEEYQHEEQYDVITSRAV------ASLNELTEWALPLL 138
Query: 180 NKNGIIII 187
G +
Sbjct: 139 KPGGYFLA 146
>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase.
This family consists of examples of
ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme
involved in biosynthesis of the inner core of
lipopolysaccharide (LPS) for Gram-negative bacteria.
This enzyme is homologous to UDP-glucose 4-epimerase
(TIGR01179) and belongs to the NAD dependent
epimerase/dehydratase family (pfam01370) [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 314
Score = 28.8 bits (65), Expect = 3.1
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 89 GAG-IGR-ISKYLLAKHFDKI---DLLEQSSKFIEQAKEEILKDCDK 130
GAG IG + K L + I D L KF+ A I DK
Sbjct: 6 GAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADYIDK 52
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 85 VLDVGAGIGRISKYLLAK 102
V+DVGA IG S Y K
Sbjct: 2 VIDVGANIGDFSLYFARK 19
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 27.3 bits (61), Expect = 3.7
Identities = 18/108 (16%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 84 RVLDVGAGIGRIS-KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142
+ D+GAG G ++ + ++ +E++ +A + I ++ + V ++
Sbjct: 22 VLWDIGAGTGSVTIEAARLVPNGRVYAIERN----PEALDLIERNLRRFGVSNIVIVEGD 77
Query: 143 KPE---DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
PE DL D +++ + ++I+ ++ L G I++
Sbjct: 78 APEAPEDLLPDPDAVFVGGSGGLL--QEIL---EAVERRLRPGGRIVL 120
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 28.4 bits (64), Expect = 3.8
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLL--AKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
PG RVL+ G G G ++ YL + E F + A+E + + L +
Sbjct: 94 PGS-RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTL 150
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187
+ D + D + LD D L L G++++
Sbjct: 151 KLGDVREGIDEEDVDAV--------FLDLPDPWNVLEHVSDALKPGGVVVV 193
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 28.1 bits (62), Expect = 5.0
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 SHYSEVTEYYSNVP-PTIDGMLNGYSSISDLDIQTSNQFLSSL 72
S +EV Y+ P P + +S L++ ++QF+SS+
Sbjct: 727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKE 122
+VLD+G G G + L K K+ L++ +++ +E A++
Sbjct: 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK 200
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 27.9 bits (62), Expect = 5.9
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 35 EVTEYYSNVPPTIDGMLNGY 54
+VT YYSN+ P G GY
Sbjct: 542 QVTTYYSNICPN--GAYQGY 559
>gnl|CDD|234544 TIGR04325, MTase_LIC12133, putative methyltransferase, LIC12133
family. Members of this family tend to occur next to
glycosyltransferases and other characteristic enzymes of
O-antigen biosynthetic regions. The founding member is
LIC12133 from Leptospira interrogans serovar
Copenhageni. PSI-BLAST reveals distant homology to known
SAM-dependent methyltransferases, as in pfam13489.
Length = 235
Score = 27.6 bits (62), Expect = 6.2
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLL-----EQSSKFIEQAKEEILKDCDKLDKC 134
G+ RVLD G +G + Y + D L EQ + +E + + +D D+L
Sbjct: 64 EGRLRVLDFGGSLG-STYYQYKRFLPLPDGLRWTVVEQ-PEVVEAGR-RLAEDGDRLS-- 118
Query: 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
+ ++D + DV+ + VL ++ ED + L +L N I+ +
Sbjct: 119 FYTDLEDAEG------PDVVLLSGVLQYL--EDPLAEL---LALLAYNPRYILLNRTPFH 167
Query: 195 VKNEY 199
++
Sbjct: 168 EGPDF 172
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 27.3 bits (61), Expect = 6.8
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 33/124 (26%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ---AKEEILKDCDKLDKCYNV 137
++DVGAG G +S A F + + IE+ A I ++ + C N+
Sbjct: 31 RAKHLIDVGAGTGSVS-IEAALQFPSLQVTA-----IERNPDALRLIKENRQRFG-CGNI 83
Query: 138 GIQD-FKPEDLNIKYDVIW-----------IQW-----------VLMFILDEDIIKFLNL 174
I P +L K D I+ I W VL FIL E++ L
Sbjct: 84 DIIPGEAPIELPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAH 143
Query: 175 CKQI 178
++
Sbjct: 144 LEKC 147
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 27.0 bits (61), Expect = 7.2
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 49/151 (32%)
Query: 56 SISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIG------RISKYLLAKHFDKIDL 109
+I D + L SL PG RVLDVG+G G I + K+ L
Sbjct: 21 AIRDPEELWERHILDSLAIAP-YLPGGERVLDVGSGAGFPGIPLAI---ARPEL--KVTL 74
Query: 110 LEQSSK---FIEQAKEEILKDCDKLDKCYNVGI-----QDFKPEDLNIKYDVIWIQWVLM 161
++ K F+ + E+ L NV + ++F E K+DV+
Sbjct: 75 VDSLGKKIAFLREVAAEL-----GLK---NVTVVHGRAEEFGQE---EKFDVV------- 116
Query: 162 FI------LDEDIIKFLNLCKQILNKNGIII 186
L + LC +L G +
Sbjct: 117 -TSRAVASLS----DLVELCLPLLKPGGRFL 142
>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases,
including levodione reductase, classical (c) SDRs.
Cyloclohexanol reductases,including
(6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione)
reductase of Corynebacterium aquaticum, catalyze the
reversible oxidoreduction of hydroxycyclohexanone
derivatives. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 257
Score = 27.5 bits (61), Expect = 7.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 89 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126
G+G+G + LAK K+ L++ + + +E AK +L+
Sbjct: 12 GSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLE 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.400
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,893,126
Number of extensions: 1235870
Number of successful extensions: 1330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 82
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)