RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8370
(256 letters)
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 209 bits (533), Expect = 4e-68
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 3/214 (1%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE YD
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYD 148
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLDV 207
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 208 VRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 241
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 191 bits (487), Expect = 6e-61
Identities = 77/214 (35%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R LD GAGI
Sbjct: 50 YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGI 104
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL K + DLLE +E+AK E+ + K ++ YD
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYD 160
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 212
+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+ RS
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220
Query: 213 FCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ LF+++ ++ VK P LF + M+ALK
Sbjct: 221 YKRLFNESGVRVVKEAFQEEWPTDLFPLKMYALK 254
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 66.9 bits (163), Expect = 2e-13
Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
+ YY D Y + L L ++ + VL++
Sbjct: 4 SHGLIESQLSYYRARASEYDATFVPYMDSAAP------AALERL----RAGNIRGDVLEL 53
Query: 89 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDL 147
+G G ++ L+ D++ L+ S++ I +A L + + + + D+ P+
Sbjct: 54 ASGTGYWTR-HLSGLADRVTALDGSAEMIAEAGRHGLDNVE-----FRQQDLFDWTPDR- 106
Query: 148 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
++D ++ L + D+ F + + G++ D
Sbjct: 107 --QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 66.8 bits (163), Expect = 2e-13
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 28/210 (13%)
Query: 34 SEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIG 93
+E + T D + G L + + VL+ G G G
Sbjct: 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDV-----VNKSFGNVLEFGVGTG 57
Query: 94 RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 153
++ L + +E S + AKE KL K +++ DF ++ D
Sbjct: 58 NLTN-KLLLAGRTVYGIEPSREMRMIAKE-------KLPKEFSITEGDFLSFEVPTSIDT 109
Query: 154 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV---------------ASGVKNE 198
I + + D++ + Q+LNK G I+ D + G
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 199 YDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228
+D + +P +F +
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 66.0 bits (161), Expect = 2e-13
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 25/161 (15%)
Query: 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVL 86
D ++ + +Y G Y+ T +FL L P ++L
Sbjct: 4 DMTQAFDDDTLRFY-------RGNATAYAERQP-RSATLTKFLGEL-------PAGAKIL 48
Query: 87 DVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146
++G G G ++ +LA FD +D + S + +A + + + D
Sbjct: 49 ELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLGRPVRTML------FHQLDAID 101
Query: 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
YD +W L+ + +++ L L + L G+
Sbjct: 102 ---AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 64.8 bits (158), Expect = 6e-13
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
+V++ YS+ + +L S D D + +LDVG+G
Sbjct: 2 TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWA---------TGVDGVILDVGSGT 52
Query: 93 GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI- 149
GR + +L + ++ +++ +E A++ DL+
Sbjct: 53 GRWTGHLASLGHQIEGLEP---ATRLVELARQT-HPSVT-------FHHGTI--TDLSDS 99
Query: 150 --KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV 207
++ + + L+ + ++ L + + G +++ ++ Y ++
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYR 159
Query: 208 RSLPQFCLLFSKANLKCVKSEKVTGMP 234
LP+ A + S P
Sbjct: 160 WPLPELAQALETAGFQVTSSHWDPRFP 186
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 62.8 bits (153), Expect = 9e-12
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 27/178 (15%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDK 130
+ +VLD+ A G + + D +E AKE +
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVD----WASV---LEVAKE-NARIQGV 213
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ + + D YD++ + L + L K L G +I+ D
Sbjct: 214 ASRYHTIA-GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272
Query: 191 VASGVKNE------YDDE-----DSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSL 237
+ + + + + + ++ +FS A + + + +
Sbjct: 273 IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 59.0 bits (143), Expect = 7e-11
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
+T ++ L ++ K PG + LD+G G GR S YL A +D +D ++++ I +
Sbjct: 19 RTHSEVLEAV---KVVKPG--KTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVER 72
Query: 123 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 182
+K + LD + + D + +YD I VLMF+ + I + ++
Sbjct: 73 --IKSIENLDNL-HTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 129
Query: 183 GIIII 187
G +I
Sbjct: 130 GYNLI 134
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 59.4 bits (144), Expect = 8e-11
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 25/165 (15%)
Query: 34 SEVTEYYSNVPPT----IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 89
SE+ + V + + + + ++ +LD+G
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVD-----------TENPDILDLG 52
Query: 90 AGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 148
AG G +S +L+ K+ + L++ S K +E AK + V + +
Sbjct: 53 AGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN-------RFRGNLKVKYIEADYSKYD 105
Query: 149 I--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
KYD++ + + DED + IL ++GI I D V
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 59.3 bits (144), Expect = 2e-10
Identities = 25/182 (13%), Positives = 59/182 (32%), Gaps = 32/182 (17%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
R+LD+G G+ + + + D L Q +E +++ +
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD----LPQQ---LEMMRKQT-AGLSGSE 229
Query: 133 KCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ + G + D+ +D +W+ L +E++I L Q + K+ + I +
Sbjct: 230 RIHGHGA-NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288
Query: 191 VASGVKNEYDDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTGMPKS 236
+ + E + + A L+ + + G+ S
Sbjct: 289 LWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHS 348
Query: 237 LF 238
+
Sbjct: 349 IL 350
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 58.4 bits (141), Expect = 3e-10
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 71 SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK 130
+VLD+G G GR S YL + + + + I E K+
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYL-SLLGYDVTSWDHNENSIAFLNETKEKENLN 168
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + + D ++ YD I V MF+ E + + K+ N G +I
Sbjct: 169 I----STALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 57.4 bits (138), Expect = 4e-10
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 120
D + + L G R L G G G + + + L+ S + +A
Sbjct: 48 DQGRATPLIVHLVDTSSLPLG--RALVPGCGGGHDVVAMASPERF-VVGLDISESALAKA 104
Query: 121 KEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 179
E + + ++P + +D+I+ I E + ++L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTE---LFDLIFDYVFFCAIEPEMRPAWAKSMYELL 161
Query: 180 NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL-------LFSKANLKCVKSEKVT 231
+G +I Y D P + + + K V E+
Sbjct: 162 KPDGELIT---------LMYPITDH---VGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 57.8 bits (139), Expect = 5e-10
Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 24/202 (11%)
Query: 54 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK------- 106
+S+ + ++ L + + + ++L +G G G I +L+K +
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 107 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-------KPEDLNIKYDVIWIQWV 159
+++E S++ I + KE + K + + + + + K+D I + +
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 160 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--------GVKNEYDDEDSSVVRSLP 211
L ++ +DI L +L N ++I S + + +D +
Sbjct: 145 LYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 202
Query: 212 QFCLLFSKANLKCVKSEKVTGM 233
+ LK + ++ M
Sbjct: 203 DLTQMLDNLGLKYECYDLLSTM 224
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 56.4 bits (136), Expect = 1e-09
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKT--------------RVLDVGAGIGRI 95
M N +I D ++ F S++ Q P T + D+G G G
Sbjct: 1 MSNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60
Query: 96 SKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---N 148
+ LA H +D S FI+ + L V +DL N
Sbjct: 61 TMV-LAGHVTGQVTGLDF---LSGFIDIFNRNARQ--SGLQN--RVTGIVGSMDDLPFRN 112
Query: 149 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
+ D+IW + + I E + LN ++ L K G + + +
Sbjct: 113 EELDLIWSEGAIYNIGFE---RGLNEWRKYLKKGGYLAVSE 150
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 56.2 bits (136), Expect = 2e-09
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
V+D+ G G +L +H +D + + K I
Sbjct: 178 ARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG--------G 229
Query: 133 KCYNVGIQDF--KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
+ ++ DV+ + L + + + + ++ G ++I
Sbjct: 230 RVEFFE-KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288
Query: 191 VASGVKNEYDDEDSSVVRSLPQFCLLFS 218
++D R P FS
Sbjct: 289 TM--------NDD----RVTPALSADFS 304
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 55.9 bits (134), Expect = 2e-09
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 25 EKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTR 84
+ E+ E+Y+++ ++I+ +N F+ + + + G
Sbjct: 12 KDQAMEGKKEEIREHYNSIRERG---RESRQRSKTINIRNANNFIKACLIRLYTKRGD-S 67
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
VLD+G G G + ++ + I A+ + + +
Sbjct: 68 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127
Query: 145 EDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 187
DL ++DVI Q+ + E + + L G I+
Sbjct: 128 MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 54.9 bits (132), Expect = 5e-09
Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
P VL++ AG+GR++ L ++ + LE S+ + ++ + + + +
Sbjct: 81 PVSGPVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139
Query: 140 QDFKPEDLNIKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKNGIIII 187
D L+ ++ + I + + + D ++ L G ++
Sbjct: 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 54.0 bits (130), Expect = 6e-09
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 59 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 118
D ++ L + P + +LDV G G ++ K F LE S +
Sbjct: 20 GKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEH-FTKEFGDTAGLELSEDMLT 76
Query: 119 QAKEEILKDCDKLDKCYNVG--IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 174
A++ + + D + L K+ + + + ++ E++ +
Sbjct: 77 HARK----------RLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVAS 126
Query: 175 CKQILNKNGIIII 187
+ L G++++
Sbjct: 127 FAEHLEPGGVVVV 139
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 54.1 bits (130), Expect = 7e-09
Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 28/159 (17%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
E+ E Y D + G D L++L ++ P +LDV G
Sbjct: 15 SGEIAELY-------DLVHQGK----GKDYHREAADLAALV--RRHSPKAASLLDVACGT 61
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKPEDLNIK 150
G ++ LA F ++ LE S+ + A+ + + + D + L +
Sbjct: 62 GMHLRH-LADSFGTVEGLELSADMLAIARR----------RNPDAVLHHGDMRDFSLGRR 110
Query: 151 YDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII 187
+ + + + + ++ L + +G++++
Sbjct: 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 53.3 bits (128), Expect = 1e-08
Identities = 29/181 (16%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRI 95
+ E Y+ + D + ++ F+ ++ + + RVLD+ G G
Sbjct: 1 MYELYTLLAEYYDTIYRRR----IERVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIP 55
Query: 96 SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVI 154
+ LA+ ++ L+ + + A+ + + K++ + G + + ++ ++D +
Sbjct: 56 TLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIE--FLQGDVLEIAFKN---EFDAV 109
Query: 155 WIQW-VLMFILDEDIIKFLNLCKQILNKNGIIII-------KDNVASGVKNEYDDEDSSV 206
+ + +M+ +ED+ K + + L G+ I V NE E+ V
Sbjct: 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLV 169
Query: 207 V 207
+
Sbjct: 170 I 170
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 53.1 bits (127), Expect = 1e-08
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
+P ++D G G +K+ L++ F + +D+ S +E A +E + Y
Sbjct: 55 NPEL-PLIDFACGNGTQTKF-LSQFFPRVIGLDV---SKSALEIAAKE----NTAANISY 105
Query: 136 NVG----IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
+ + I I+++ I E + +L K G + + +
Sbjct: 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165
Query: 192 ASGVKNEYDDEDSSVVRSLP 211
+ ++ + LP
Sbjct: 166 TGCI--DFFNSLLEKYGQLP 183
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 52.6 bits (126), Expect = 2e-08
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
G RVLD+G G G + + + I + + + I+ + K + +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV-DINEDMIKFCEG-------KFNVVKS 88
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
I+ K D + I + + E + + L+LC + + I+I
Sbjct: 89 DAIEYLKSLPDK-YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVI 138
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 52.5 bits (126), Expect = 2e-08
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKC 134
S + L++G G + LA H + ID+ + I +A + K +
Sbjct: 48 SSGAVSNGLEIGCAAGAFT-EKLAPHCKRLTVIDV---MPRAIGRACQR-TKRWSHIS-- 100
Query: 135 YNVG-IQDFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 189
+ I F + +D+I + VL ++ D + ++ ++L G ++
Sbjct: 101 WAATDILQFSTAE---LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+L++G+ G + L +HF+ I +E S + I A+ +L
Sbjct: 36 AFTPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQG-------RLKDG 87
Query: 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFL-NLCKQILNKNGIIII 187
F+ L +YD I VL +L+ +D + L + L + G + +
Sbjct: 88 ITYIHSRFEDAQLPRRYDNI----VLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 139
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 52.0 bits (125), Expect = 3e-08
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
K VLD+G G + + ++ ++ +E + EQAKE K
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKE----------KLD 75
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 187
+V + D + D+ ++D + + +L+ D + K + +NG+I+
Sbjct: 76 HVVLGDIETMDMPYEEEQFDCV----IFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 51.8 bits (124), Expect = 3e-08
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
+VLD+ G+G S L F+ +D+ S I +A+E ++ + VG D
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDI---SEDMIRKAREYAKSRESNVE--FIVG--D 93
Query: 142 FKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198
L+ + +D + ++ ++ + +++L +G I+ +
Sbjct: 94 A--RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 199 YDDE 202
+
Sbjct: 152 LKES 155
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 51.7 bits (124), Expect = 4e-08
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 58 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFI 117
+D+D + + F+ +++ LD+ G G +++ L K + ++ S + +
Sbjct: 16 ADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEML 72
Query: 118 EQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLC 175
+A+ + K + QD ++N K+D+I +I+D +D+ K+
Sbjct: 73 SEAENKFRSQGLKP----RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAV 128
Query: 176 KQILNKNGIIII-------KDNVASGVKNEYDDEDSSVVR 208
L + G+ I V YDD++
Sbjct: 129 SNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 51.1 bits (122), Expect = 4e-08
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+S+ K VLD GAG + + K +E S +++A+ ++ KL+
Sbjct: 18 CNESNLDK-TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN-- 74
Query: 135 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
+ G D L K ++ + + D+ + ++ K++L G+ I
Sbjct: 75 ISKG--DI--RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 51.9 bits (124), Expect = 5e-08
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
++D G G G + +L + ID + +A+E D +
Sbjct: 25 HIVDYGCGYGYLGL-VLMPLLPEGSKYTGIDS---GETLLAEARELFRL--LPYDSEFLE 78
Query: 138 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
G + + D KYD+ L+ + L + K G II +
Sbjct: 79 GDATEIELND---KYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFE 126
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 52.0 bits (125), Expect = 5e-08
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 29/171 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
G +++DVG GIG IS +L + L + I+ E + D+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILN----LPGA---IDLV-NENAAEKGVADR 241
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
+ + D E + D + +L ++ + G ++I D V
Sbjct: 242 MRGIAV-DIYKESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299
Query: 194 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+N D S + + ++ + K V +
Sbjct: 300 DPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYD 350
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 51.3 bits (123), Expect = 6e-08
Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
N + E + Y + G + IS ++ + + LS + + S +VLD+
Sbjct: 16 NNQYTDEGVKVYE--------FIFGENYISSGGLEATKKILSDIELNENS-----KVLDI 62
Query: 89 GAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
G+G+G Y + + + ID+ S + A E + + +K D
Sbjct: 63 GSGLGGGCMY-INEKYGAHTHGIDI---CSNIVNMANERVSGN----NKI-IFEANDILT 113
Query: 145 EDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------ 197
++ +D+I+ + ++ + E+ K C + L G ++I D A+ +N
Sbjct: 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK 173
Query: 198 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 228
EY + + ++ ++ + + N K V S+
Sbjct: 174 EYVKQRKYTLITVEEYADILTACNFKNVVSK 204
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 51.4 bits (123), Expect = 6e-08
Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 32/161 (19%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKT--------------RVLDVGAGIGRI 95
M N +SI D D + L Q P T ++ D+G G G
Sbjct: 1 MSNNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 96 SKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIK- 150
+ + LA + IDL FIE E +K ++L +
Sbjct: 61 TLF-LADYVKGQITGIDL---FPDFIEIFNENAVK--ANCADRVKGITGSM--DNLPFQN 112
Query: 151 --YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D+IW + + I E + +N + L K G I + +
Sbjct: 113 EELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAVSE 150
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 51.1 bits (122), Expect = 7e-08
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
D + VLD+G G G Y K IDL S + + +AK + CY
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDL---SERMLTEAKRK----TTSPVVCY 94
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN-- 190
ED+ I Y+V+ L +I L +G I
Sbjct: 95 EQK----AIEDIAIEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHP 148
Query: 191 --VASGVKNEYDDED 203
A G ++ Y DE
Sbjct: 149 VFTADGRQDWYTDET 163
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 50.9 bits (122), Expect = 8e-08
Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 73 YCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
+ ++ +PGK R+ D+G G G + LA H++ + ++ S + +E A+E+ ++ +D
Sbjct: 26 WVLEQVEPGK-RIADIGCGTGTATLL-LADHYE-VTGVDLSEEMLEIAQEKAMETNRHVD 82
Query: 133 KCYNVG-IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII-- 187
+ V +++ + + D I I L ++ D+ + + ++L G ++
Sbjct: 83 --FWVQDMRELELPE---PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137
Query: 188 -----KDNVASGVKNEYDDEDSSVVR 208
+ + +G E SS +
Sbjct: 138 HSPYKMETLFNGKTYATHAEQSSYIW 163
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 49.8 bits (119), Expect = 1e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
P ++LD G G GRI YL + D DL I+ AK+ D + + V
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDL---DPILIDYAKQ----DFPEAR--WVV 95
Query: 138 G-IQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIII 187
G + + + +D+I +M F+ ++ L + L +G +I
Sbjct: 96 GDLSVDQISE--TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 49.9 bits (119), Expect = 1e-07
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 60 LDIQTSNQFLSSLY-------CQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLE 111
++ + + + SL RV+D+G G G + K LL F++I ++
Sbjct: 1 MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60
Query: 112 QSSKFIEQAKE----EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED 167
S + +E A+E L G ++ + + YD + V+ +
Sbjct: 61 VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFH-GYDAATVIEVIEHLDLSR 119
Query: 168 IIKFLNLCKQILNKNGIIII 187
+ F + + + I+I+
Sbjct: 120 LGAFERVLFEFA-QPKIVIV 138
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 49.8 bits (119), Expect = 2e-07
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
D+G G G ++ LL + ID +E+A + L + + +
Sbjct: 36 NGYDLGCGPGNSTE-LLTDRYGVNVITGIDS---DDDMLEKAADR-LPNTN-----FGKA 85
Query: 139 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ +KP K D+++ V ++ D + L+ L G++ +
Sbjct: 86 DLATWKPAQ---KADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAV 130
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 49.5 bits (118), Expect = 2e-07
Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 44/220 (20%)
Query: 29 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 88
+ + + + D ++ S + ++ + ++ VLDV
Sbjct: 9 KFNWHESAEKKW-------DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA-EVLDV 60
Query: 89 GAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILK--------DCDKLDKCYNV 137
G G G + Y L++ K +D+ S I++ KE D L
Sbjct: 61 GCGDGYGT-YKLSRTGYKAVGVDI---SEVMIQKGKERGEGPDLSFIKGDLSSL------ 110
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197
F+ E +++ I L + E+ ++ LN K++L +G I +
Sbjct: 111 ---PFENE----QFEAIMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPR 161
Query: 198 E------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKVT 231
E Y + +F L + K V V
Sbjct: 162 ENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 50.2 bits (119), Expect = 3e-07
Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY- 135
+ + ++D G G G + LL I ++ S K + +A + + +K
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + D + + D+ V+ + ++ +F + ++I+
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF-HPKLLIV 832
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 48.4 bits (115), Expect = 4e-07
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKE----EILKDCDK 130
+V+D+G G G + LL + +D+ S +E+AK+ + L + +
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDV---SYSVLERAKDRLKIDRLPEMQR 83
Query: 131 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 186
++ + + YD + V+ + + + F + + +I+
Sbjct: 84 KRISLFQSSLVYRDKRFS-GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/110 (16%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
PG+ +LD+G G G++++ +A+ ++ + ++ IE+A++ ++V
Sbjct: 56 QPGE-FILDLGCGTGQLTE-KIAQSGAEVLGTDNAATMIEKARQN-YPHLH-----FDVA 107
Query: 139 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++F+ + D ++ +L ++ + + + Q L G +
Sbjct: 108 DARNFRVDK---PLDAVFSNAMLHWVKEPE--AAIASIHQALKSGGRFVA 152
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 48.9 bits (116), Expect = 5e-07
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLD-KCY 135
G RVLDV G G S L+ + F +D S K ++ A +E + +
Sbjct: 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDA---SDKMLKYALKERWNRRKEPAFDKW 111
Query: 136 NVGIQDFKPEDLNI----KYDVIWIQW-VLMFILD-----EDIIKFLNLCKQILNKNGII 185
+ ++ D ++ +D + + D + L ++ G++
Sbjct: 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171
Query: 186 II 187
+I
Sbjct: 172 VI 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 6e-07
Identities = 44/227 (19%), Positives = 72/227 (31%), Gaps = 88/227 (38%)
Query: 10 YLCIIKFKQLTFTVAEKDGNRSHYSEVTEYY--SNVPPTI--------DG----MLNGYS 55
++ + K + F + G R + E Y +++PP+I +G ML
Sbjct: 293 FVSVRKAITVLFFI----GVRCY-----EAYPNTSLPPSILEDSLENNEGVPSPML---- 339
Query: 56 SISDLD-------IQTSNQFLS-------SLYCQKKSDPGKTRVLDVGAGIGRISKYLLA 101
SIS+L + +N L SL G + V +G + S Y L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNL--VVSGPPQ-SLYGLN 390
Query: 102 KHFDKI---DLLEQS-----------------------SKFIEQAKEEILKDCDKLDKCY 135
K L+QS S + A + I KD K +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN--- 447
Query: 136 NVGIQDFKPEDLNIK-YDVIWIQWVLMFILDEDIIKFLNLCKQILNK 181
F +D+ I YD + +L I + + I+
Sbjct: 448 ----VSFNAKDIQIPVYDT--FDGSDLRVLSGSISE--RIVDCIIRL 486
Score = 28.9 bits (64), Expect = 2.3
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 42/109 (38%)
Query: 2 LIKTELLTYLCIIKFKQLTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLD 61
LI +L+ K + V Y T DG SDL
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPV----------------YD----TFDG--------SDLR 469
Query: 62 IQTSNQFLSSLYCQKKSDP---------GKTRVLDVG----AGIGRISK 97
+ + + + P T +LD G +G+G ++
Sbjct: 470 VLSGS-ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 47.0 bits (112), Expect = 8e-07
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 60 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ 119
+ ++ ++L +++ KK ++D G G G KY L + K+ ++ + +++
Sbjct: 1 MSLERPEEYLPNIFEGKKG-----VIVDYGCGNGFYCKY-LLEFATKLYCIDINVIALKE 54
Query: 120 AKEEILKDCDKLDKCYNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCK 176
KE K D + + I D I + +D ++ K
Sbjct: 55 VKE-------KFDSVITLS------DPKEIPDNSVDFILFANSFHDM--DDKQHVISEVK 99
Query: 177 QILNKNGIIIIKD 189
+IL +G +II D
Sbjct: 100 RILKDDGRVIIID 112
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 47.6 bits (114), Expect = 1e-06
Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 34/170 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
+DVG G G ++K +L D E S + A + L ++
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLD----REGS---LGVA-RDNLSSLLAGERVSL 221
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 196
VG D +++ D+ + ++ + + ++ L C++ + +G +++ +
Sbjct: 222 VG-GDML-QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI---- 275
Query: 197 NEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
+ + SV+ R+ + L + + +
Sbjct: 276 SASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPME 325
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 46.9 bits (111), Expect = 1e-06
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG- 138
+ R+L +G G +S L F + ++ SS + + +
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRWETMD 97
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGII 185
++ +DV+ + L +L + + L+ ++L G
Sbjct: 98 VRKLDFPSA--SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155
Query: 186 II 187
I
Sbjct: 156 IS 157
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 47.6 bits (113), Expect = 1e-06
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 53 GYSSISDLDIQTSNQFL-SSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDL 109
GYS L + + L L+ PG +VL+ G GIG + LAK+ +I
Sbjct: 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGA-KVLEAGCGIGAQTVI-LAKNNPDAEITS 66
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-------DFKPEDLNIKYDVIWIQWVLMF 162
++ S + +E+A+E K+ K NV F + +D I++ +VL
Sbjct: 67 IDISPESLEKARENTEKNGIK-----NVKFLQANIFSLPF-EDS---SFDHIFVCFVLEH 117
Query: 163 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
+ + + L K++L G I + +
Sbjct: 118 L--QSPEEALKSLKKVLKPGGTITVIEGDHGS 147
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 47.1 bits (112), Expect = 1e-06
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
G R++D+G G G ++ +DL S K + +A+ Y
Sbjct: 43 GGL-RIVDLGCGFGWFCRWAHEHGASYVLGLDL---SEKMLARARAA----GPDTGITYE 94
Query: 137 VGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
D + L++ +D+ + L ++ ED+ + Q L+ G +
Sbjct: 95 RA--DL--DKLHLPQDSFDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTE 145
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 47.4 bits (112), Expect = 1e-06
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKC 134
PG V V G L ID + ++ A L
Sbjct: 118 PGC-VVASVPCGWMSELLALDYSACPGVQLVGIDY---DPEALDGATRLAAG--HALAGQ 171
Query: 135 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKD 189
+ QD D YD++ + ++ D+ + + Q L G ++
Sbjct: 172 ITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 47.8 bits (114), Expect = 1e-06
Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 38/177 (21%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
VLDVG G G + + + + L E+A+ D D+
Sbjct: 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE----LAGP---AERAR-RRFADAGLADR 233
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
DF + L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 234 VTVAE-GDFF-KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 291
Query: 194 GVKNEYDDEDSSVV----------------RSLPQFCLLFSKANLKCVKSEKVTGMP 234
D R+ + L A L
Sbjct: 292 E-----GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTT 343
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 47.1 bits (112), Expect = 2e-06
Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 26/176 (14%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
G + ++DVG G GR + +++K+ K I +++++ L +VG
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYP--------LIKGINFDLPQVIENAPPLSGIEHVGG 259
Query: 140 QDFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 198
F + + D + ++ V DE I+FL+ C + L+ NG +II + + N
Sbjct: 260 DMFAS----VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT 315
Query: 199 YDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIY 241
++ R+ Q+ L + + + + Y
Sbjct: 316 SEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 3e-06
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 32/166 (19%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDI-----QTSNQFLSSLYCQKKSDP-----GKTRV 85
+T + V + + S+ + + + L L C+ + P R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 86 LD-VGA----GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGI 139
L + G+ + KH + L + + + K + + +
Sbjct: 330 LSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSV 380
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLC--KQILNKNG 183
F P +I ++ + W + + D++ +N ++ K
Sbjct: 381 --F-PPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQP 421
Score = 38.3 bits (88), Expect = 0.002
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 35/152 (23%)
Query: 102 KHFDKIDLLEQSSKFIEQAK-EEILKDCDKLDKCYNV----------GIQDFKPEDLNIK 150
+FD D+ + + + + + I+ D + + +Q F E L I
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 151 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSL 210
Y + + + + L + + K NV+ L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----------YLKL 140
Query: 211 PQFCLLFSKANLKCVKSEK---VTGMP---KS 236
+ L ++ K + G+ K+
Sbjct: 141 --------RQALLELRPAKNVLIDGVLGSGKT 164
Score = 33.3 bits (75), Expect = 0.076
Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 81/237 (34%)
Query: 1 MLIKTELLTYLCIIKFKQLTFTVAEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDL 60
M++ +L Y + EK S S I + +
Sbjct: 405 MVVVNKLHKYSLV-----------EKQPKESTIS------------IPSIYLELKVKLEN 441
Query: 61 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL---LAKHFDKIDLLEQSS--- 114
+ + Y K+ + + +Y + H I+ E+ +
Sbjct: 442 EYALHRSIVDH-YNIPKTFDSDDLIPP------YLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 115 ------KFIEQAKEEILKDCDKLDKCYNVG--IQDFKPEDLNIKYDVIWIQWVLMFILD- 165
+F+EQ K I D + ++ +Q K Y +I D
Sbjct: 495 MVFLDFRFLEQ-K--IRHDSTAWNASGSILNTLQQLK------FYK--------PYICDN 537
Query: 166 --------EDIIKFLNLCKQILNKNGIIIIK--DNVASGVKNE----YDDEDSSVVR 208
I+ FL ++ L I K D + + E +++ V R
Sbjct: 538 DPKYERLVNAILDFLPKIEENL-----ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 30.2 bits (67), Expect = 0.73
Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 55/199 (27%)
Query: 54 YSSISDLDIQTSNQFLSSLYCQKK--SDPGKTRVLDVGAGIGRISKYL-LAKHFDKIDLL 110
S I Q S + + + +D +V R+ YL L + LL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKLRQA-----LL 145
Query: 111 E-QSSKFIEQAKEEIL-------KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 162
E + +K + ++ K LD C + +Q + + W+
Sbjct: 146 ELRPAKNV------LIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN 193
Query: 163 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSL--PQF--CLL-- 216
+ + L QI + N + + +S +K + + R L + CLL
Sbjct: 194 SPETVLEMLQKLLYQI-DPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 217 -----------FSKANLKC 224
F NL C
Sbjct: 251 LNVQNAKAWNAF---NLSC 266
Score = 27.5 bits (60), Expect = 5.0
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD 200
DF+ + +Y I + F+ + D ++ K IL+ K E D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---------------KEEID 52
Query: 201 D---EDSSVVRSLPQFCLLFSKAN 221
+V +L F L SK
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQE 76
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 46.6 bits (111), Expect = 3e-06
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
G +D+G G G + +L + E+A+E +L D+
Sbjct: 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLE----RPPV---AEEARE-LLTGRGLADR 253
Query: 134 CYNVGIQDF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
C + DF P+ DV I+ VL D+D+++ L + + +++ DN
Sbjct: 254 CEILP-GDFFETIPDG----ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308
Query: 191 VASGVKNEYDDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTGMPKS 236
+ + +S + RS +F L K+ L+ +S P
Sbjct: 309 LID------ERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVR 362
Query: 237 L 237
+
Sbjct: 363 I 363
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 46.0 bits (109), Expect = 4e-06
Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 24/189 (12%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK----ID 108
I + ++T S L + LD+GAG G +++ L + F ++
Sbjct: 55 DQDEIREASLRTDEWLASELAMTGVLQRQA-KGLDLGAGYGGAARF-LVRKFGVSIDCLN 112
Query: 109 LLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILD 165
+ + ++ +E + L V F ++ YD IW Q + D
Sbjct: 113 I---APVQNKRNEEYNNQ--AGLADNITVKYGSF--LEIPCEDNSYDFIWSQDAFLHSPD 165
Query: 166 EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSK 219
+ K C ++L G++ I D + ++ D + SL + L +
Sbjct: 166 KL--KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 223
Query: 220 ANLKCVKSE 228
L +++
Sbjct: 224 CGLVTLRTF 232
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 45.2 bits (107), Expect = 6e-06
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
+ RVLD+G G G + + L + + +D ++ A+ L +
Sbjct: 52 QPE-RVLDLGCGEGWLLRALADRGIEAVGVDG---DRTLVDAARAA-GAGEVHLASYAQL 106
Query: 138 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
YD+I + L+ +DII+ L+ + +L G ++I
Sbjct: 107 AEAKVPVGK---DYDLICANFALLH---QDIIELLSAMRTLLVPGGALVI 150
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 44.9 bits (106), Expect = 6e-06
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
++L + G GR + +L + ++ + ++QSS + +AK+ + K+ + DF
Sbjct: 32 KILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT-TVQSNLADFD 89
Query: 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++ I + + + Q L G+ I+
Sbjct: 90 IVAD--AWEGIV--SIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 45.4 bits (108), Expect = 8e-06
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 29/170 (17%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
VLDVG G G + + + + + + ++ A+ LKD D+
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLE----MAGT---VDTAR-SYLKDEGLSDR 234
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
V DF E L K D I + +VL+ D D ++ L C + L G I+I +
Sbjct: 235 VDVVE-GDFF-EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD- 291
Query: 194 GVKNEYDDEDSSV-----------VRSLPQFCLLFSKANLKCVKSEKVTG 232
+N ++++ + + +R+ ++ L + A L + ++
Sbjct: 292 LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS 341
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 44.9 bits (107), Expect = 9e-06
Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 43/176 (24%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
V+DVG G G + LL H D L+ A D +
Sbjct: 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLD----LQGP---ASAAHRR-FLDTGLSGR 220
Query: 134 CYNVGIQDF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
V F P + VL D + L C + G++++ +
Sbjct: 221 AQVVV-GSFFDPLPAG----AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275
Query: 191 VASGVKNEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
VA DE + RSL + L ++A L + ++ +
Sbjct: 276 VA-------GDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISYV 324
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 44.0 bits (104), Expect = 2e-05
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
+ VLDV G G ++ A K+ + + ++ A+ I + V
Sbjct: 37 GNE-EVLDVATGGGHVA-NAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEY 89
Query: 140 QDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV- 195
E + + ++ + + F++ ++L K G +++ DN A
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPEND 147
Query: 196 --KNEYD----DEDSSVVRSLP--QFCLLFSKANLKCVKSEKVTG 232
Y+ + D S R+ + + +A + +
Sbjct: 148 AFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHK 192
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 44.3 bits (104), Expect = 2e-05
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 39/210 (18%)
Query: 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNG------------YSSISDLDIQTSNQFLSSLY 73
S V +YY + + ++D+ + +F
Sbjct: 15 GGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGS 74
Query: 74 CQKKSD--PGKTRVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEIL 125
G VLD+G G GR YL +K + +D+ +E A++ +
Sbjct: 75 TLPADGSLEGA-TVLDLGCGTGRDV-YLASKLVGEHGKVIGVDM---LDNQLEVARKYVE 129
Query: 126 KDCDKLDKCYNVGIQDFKPEDL------------NIKYDVIWIQWVLMFILDEDIIKFLN 173
+K + F + + D++ V ++
Sbjct: 130 YHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL--ALFK 187
Query: 174 LCKQILNKNGIIIIKDNVASGVKNEYDDED 203
++L G + D A +E +D
Sbjct: 188 EIHRVLRDGGELYFSDVYADRRLSEAAQQD 217
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 43.5 bits (102), Expect = 3e-05
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 79 DPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
D + ++DVG G G + + K F++I + S+ I+ A+ D N
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK---N 90
Query: 137 VGIQDFKPEDLNI---------KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
V + +D K D+I + D KF L K+G I I
Sbjct: 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAI 147
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 42.9 bits (101), Expect = 3e-05
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 21/162 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
RVLD+GAG G + + + + ++ + + +E A + ++ NV
Sbjct: 21 AEH-RVLDIGAGAGHTA-LAFSPYVQECIGVDATKEMVEVASSFAQE--KGVE---NVRF 73
Query: 140 QDFKPEDL---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--- 193
Q E L + +D+I ++ D+ K + ++L ++G ++ D+ A
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDP 131
Query: 194 GVKNEYDD----EDSSVVR--SLPQFCLLFSKANLKCVKSEK 229
+ + D S VR SL ++ +FS L +K
Sbjct: 132 VLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 42.6 bits (100), Expect = 5e-05
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 31/132 (23%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEE-ILKDCDKLDKCY 135
D K R+ +G G +++Y + + ++E ++ ++E + ++
Sbjct: 87 DASKLRITHLGGGACTMARYFAD-VYPQSRNTVVELDAELARLSREWFDIPRAPRV---- 141
Query: 136 NVGIQD---FKPEDLNIKYDVIWIQWVLMFILD----------EDIIKFLNLCKQILNKN 182
+ + D DVI I D ++F C + L
Sbjct: 142 KIRVDDARMVAESFTPASRDVI--------IRDVFAGAITPQNFTTVEFFEHCHRGLAPG 193
Query: 183 GIIIIKDNVASG 194
G+ + N
Sbjct: 194 GLYVA--NCGDH 203
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 42.1 bits (99), Expect = 6e-05
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKD--CDKLDK 133
PG TR+LD+G+G G + A+ ID+ SS F QAK + +++
Sbjct: 36 PG-TRILDLGSGSGEMLCT-WARDHGITGTGIDM---SSLFTAQAKRRAEELGVSERVH- 89
Query: 134 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
D N K DV V + L Q L GI++I
Sbjct: 90 ---FIHNDAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLI 138
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 42.5 bits (100), Expect = 7e-05
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 27/167 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G+G + A + K + ++ + + +VG
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPT--------IKGVNFDLPHVISEAPQFPGVTHVGGD 252
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
FK + D I ++W+L D+ L C L +G +++ +
Sbjct: 253 MFKE----VPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN 308
Query: 200 DDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTG 232
R +F L A VKS +
Sbjct: 309 PSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 41.3 bits (97), Expect = 1e-04
Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 43/213 (20%)
Query: 26 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV 85
D H+ + + + + +LS L K P R
Sbjct: 3 SDKIHHHHHHMWHIFERFVNEYERWFLVHR----------FAYLSELQAVKCLLPEG-RG 51
Query: 86 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQD 141
+++G G GR A +E S + E A++ + + L
Sbjct: 52 VEIGVGTGR-----FAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENL---------P 97
Query: 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD-NVASGVKNEY- 199
K E +D + + F+ +D + L +IL K G +I+ + S + EY
Sbjct: 98 LKDE----SFDFALMVTTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 200 -DDEDSSVVR-----SLPQFCLLFSKANLKCVK 226
+ E S + S + L KA + K
Sbjct: 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 41.3 bits (97), Expect = 1e-04
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
G RVLDVG GIG+ + LA D I + S + QA L
Sbjct: 61 SG-DRVLDVGCGIGKPAVR-LATARDVRVTGISI---SRPQVNQANARATA--AGLANRV 113
Query: 136 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D DL +D +W L + D + L ++L G + I D
Sbjct: 114 TFSYADA--MDLPFEDASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIAD 166
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 41.5 bits (98), Expect = 1e-04
Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 40/182 (21%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 133
V DVG G G +L +H D + + + + +
Sbjct: 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLD----RAEV---VARHRLDAPDVAG---- 232
Query: 134 CYNVGIQ--DF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
+ DF P DV ++ +L DED ++ L C++++ +G +++
Sbjct: 233 --RWKVVEGDFLREVP-----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285
Query: 189 DNVASGVKNEYDDEDSSVV---------RSLPQFCLLFSKANLKCVKSEKVTGMPKSLFK 239
D V + + ++ + R+ + LF+ A L+ + + S+
Sbjct: 286 DAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSS-VMSIAV 344
Query: 240 IY 241
Sbjct: 345 GV 346
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 41.3 bits (96), Expect = 1e-04
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
G+ R + +G G ++ LL+ + +++++E E +++ I + +D NV
Sbjct: 122 RGE-RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI--EGLGVDGV-NVI 177
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
D D ++DV+ + L E + + ++ II +
Sbjct: 178 TGDETVIDGL-EFDVLMVAA-----LAEPKRRVFRNIHRYVDTETRIIYRT 222
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 41.2 bits (96), Expect = 1e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
P RVL+ G G G + + + S + ++ A+
Sbjct: 48 PQT-RVLEAGCGHGPDA-ARFGPQAARWAAYDFSPELLKLARA 88
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 41.0 bits (96), Expect = 2e-04
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 27/167 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G T ++DVG G G ++ ++AK+ I +++D ++G
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKYPS--------INAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 199
F + K D I+I+W+ DE +K L C L +G +I+ + + +
Sbjct: 255 MFDG----VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS 310
Query: 200 DDEDSSVV--------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+ R+ +F L + + K
Sbjct: 311 IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAF 357
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 40.0 bits (93), Expect = 4e-04
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 54 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105
+SS I + +Y K VLDVG G G +S AK
Sbjct: 30 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKV-VLDVGCGTGILS-MFAAKAGA 87
Query: 106 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMF 162
K L S+ + QA + I +KL+ + I+ K E++++ K DVI +W+ F
Sbjct: 88 KKVLGVDQSEILYQAMDIIRL--NKLEDTITL-IKG-KIEEVHLPVEKVDVIISEWMGYF 143
Query: 163 ILDEDIIK-FLNLCKQILNKNGIIII 187
+L E ++ L + L K G +
Sbjct: 144 LLFESMLDSVLYAKNKYLAKGGSVYP 169
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 40.1 bits (94), Expect = 4e-04
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G +K + K I + +++++ + VG
Sbjct: 188 GLESIVDVGGGTGTTAKIICETFPK--------LKCIVFDRPQVVENLSGSNNLTYVGGD 239
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQIL---NKNGIIIIKDNVASGVK 196
F I D + ++++L D+D ++ L CK+ + K G + I D V K
Sbjct: 240 MFTS----IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295
Query: 197 NEYDDEDSSVV------------RSLPQFCLLFSKANLKCVKSEKVTGM 233
+E ++ R+ ++ LF +A + K +TG
Sbjct: 296 DENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGF 344
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.4 bits (92), Expect = 4e-04
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKC 134
+ +D+G+G G +S LAK D I L+ S E A + I +
Sbjct: 38 NRFGITAGTCIDIGSGPGALS-IALAKQSDFSIRALDFSKHMNEIALKNI----ADANLN 92
Query: 135 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
+ I ++ I+ D+I + + F ED+ +IL G I
Sbjct: 93 DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150
Query: 192 ASG 194
+
Sbjct: 151 GNK 153
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 39.5 bits (92), Expect = 5e-04
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 12/145 (8%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQDF 142
V+D+ AGIG +S + K+ +E+ + E I L + YN D
Sbjct: 128 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN---MDN 184
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202
+ D +LM +F+ I II + V K +
Sbjct: 185 RDFPGENIADR-----ILM-GYVVRTHEFIPKALSIAKDGAIIHYHNTVPE--KLMPREP 236
Query: 203 DSSVVRSLPQFCLLFSKANLKCVKS 227
+ R ++ K N +K
Sbjct: 237 FETFKRITKEYGYDVEKLNELKIKR 261
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 39.8 bits (93), Expect = 5e-04
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G ++K + + + + + VG
Sbjct: 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN--------ENLNFVGGD 244
Query: 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ---ILNKNGIIIIKDNVASGVKN 197
FK D + ++WVL DE +K L K+ K+G +II D +
Sbjct: 245 MFKSIP---SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 301
Query: 198 EYDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKVTG 232
+ + + R+ ++ L A K ++G
Sbjct: 302 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISG 349
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 38.2 bits (89), Expect = 0.001
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE--EILKDCDKLDKCYNVGI 139
K +++D+ +G G I L + KI +E + + AK + D++ + +
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQI-EIIEYDL 108
Query: 140 QDFKPEDLNIKYDVI 154
+ + D++
Sbjct: 109 KKITDLIPKERADIV 123
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 38.3 bits (88), Expect = 0.001
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109
ML+ D + + ++++ K GKT VLDVG G G ++ A+ +
Sbjct: 41 MLS--------DRVRMDAYFNAVFQNKHHFEGKT-VLDVGTGSGILA-IWSAQAGARKVY 90
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDII 169
+++K + A+ + + LD V + L K DVI +W+ F+L E +
Sbjct: 91 AVEATKMADHARALVKA--NNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMF 148
Query: 170 KFLNLCKQILNKNGIIIIKD 189
+ + K ++
Sbjct: 149 DSVISARDRWLKPTGVMYPS 168
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.0 bits (88), Expect = 0.002
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 54 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 113
Y + + + Q +++ + L++G G GRI+ L + L+
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIAL-PLIARGYRYIALDAD 70
Query: 114 SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---NIKYDVIWIQWVLMFILD 165
+ +E +++I K+ D + + + + + + D
Sbjct: 71 AAMLEVFRQKIAGVDRKVQ--VVQA--DA--RAIPLPDESVHGVIVVHLWHLVPD 119
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 38.0 bits (88), Expect = 0.002
Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 10/161 (6%)
Query: 31 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKK-SDPGKTRVLDVG 89
S + + T + +S+ +D S L +L + +VLD+G
Sbjct: 184 SLWRAFSARILGAEYTFHHLPGVFSAGK-VDP-ASLLLLEALQERLGPEGVRGRQVLDLG 241
Query: 90 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 149
AG G ++ LA+ ++ +E + ++ + + K ++ + E
Sbjct: 242 AGYGALTLP-LARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEA--- 297
Query: 150 KYDVIWI---QWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++D+I V ++ + F+N+ L G+ +
Sbjct: 298 RFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
+LD+G G G+IS LA + ++ +S+ I A+
Sbjct: 29 QEDD-EILDIGCGSGKISL-ELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA- 85
Query: 139 IQDFKP---EDLNIK---YDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 187
+FK L+ +D +Q L + D ++ + + ++L + +
Sbjct: 86 --EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 37.5 bits (87), Expect = 0.002
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 26/160 (16%)
Query: 35 EVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGR 94
E+Y + D M + L RVLD+G G G+
Sbjct: 16 RSWEFYDRIARAYDSM-YETPKWKLYHRLIGSFLEEYL-------KNPCRVLDLGGGTGK 67
Query: 95 ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD-- 152
S +L + F+ + L++ S + +E A+E+ +K+ + EDL
Sbjct: 68 WSLFLQERGFEVV-LVDPSKEMLEVAREKGVKNVVEAK-----------AEDLPFPSGAF 115
Query: 153 --VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 190
V+ + VL ++ ++D K + +++L +G++I +
Sbjct: 116 EAVLALGDVLSYVENKD--KAFSEIRRVLVPDGLLIATVD 153
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 38.2 bits (88), Expect = 0.002
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLL---AKHFDKIDLLEQSSKFIEQAKEEILKDCDKL 131
Q +D VLDVG G G +S + A+ ++ + K L D +
Sbjct: 152 QNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 211
Query: 132 DKCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
K E++++ + D+I + + + +E +++ K+ L +G +
Sbjct: 212 IPG--------KVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 75 QKKSDPGKTRVLDVGAGIGRISKYLL---AKHFDKIDLLEQSSKFIEQAKEEILKDCDKL 131
Q +D VLDVG G G +S + A+ ++ + K L D +
Sbjct: 44 QNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 103
Query: 132 DKCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 188
K E++++ + D+I + + + +E +++ K+ L +G +
Sbjct: 104 IPG--------KVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
G + D+GAG G S L + +E S +QA
Sbjct: 33 PKGS-VIADIGAGTGGYSVALANQGLFVY-AVEPSIVMRQQAVV 74
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 37.1 bits (85), Expect = 0.004
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 15/134 (11%)
Query: 69 LSSLYCQK--KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126
L S+YC K D K +VL + G G + + + + I + E K
Sbjct: 34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK 93
Query: 127 ------------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL-DEDIIKFLN 173
D + + + + K+++I Q+ + + +N
Sbjct: 94 LNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMN 153
Query: 174 LCKQILNKNGIIII 187
++ G ++I
Sbjct: 154 NLSELTASGGKVLI 167
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 36.9 bits (84), Expect = 0.004
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 2/165 (1%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDK-IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142
VLD+G +G ++ + K + L+ S+ I A+ + ++ + +
Sbjct: 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR-QNIRHYLSEELRLPPQTLEG 107
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202
P + + + + L+ + +NV N D
Sbjct: 108 DPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDR 167
Query: 203 DSSVVRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALKP 247
D V P++ ++ + K V K +F+ L+P
Sbjct: 168 DDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRP 212
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 36.8 bits (85), Expect = 0.004
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKC 134
GK VL +G G G I ++ + ++E I+ K+ + K C + C
Sbjct: 188 TGK-DVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDC 246
Query: 135 YNVGIQDF-----KPEDLNIKYDVIWIQWVLMFILDEDIIK---------FLNLCKQILN 180
Y V I+D + ++D + I + + + L+L ++L
Sbjct: 247 YQVLIEDCIPVLKRYAKEGREFDYV-INDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK 305
Query: 181 KNGIII 186
++G
Sbjct: 306 QDGKYF 311
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 36.2 bits (84), Expect = 0.005
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 24/116 (20%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFI-----EQAKEEILKDCDKLDKC 134
+DVG G G ++ ++L + + +A + +
Sbjct: 33 KNDV-AVDVGCGTGGVT----------LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG 81
Query: 135 YNVG-IQDFKPEDLN--IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
NV ++ PE L D+ + ++ + L + K L G II+
Sbjct: 82 DNVTLMEGDAPEALCKIPDIDIAVV-----GGSGGELQEILRIIKDKLKPGGRIIV 132
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 36.1 bits (84), Expect = 0.005
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 41/165 (24%)
Query: 44 PPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPG------------KTRVLDVGAG 91
++ +L G L +T S ++ K D G +LD+G G
Sbjct: 11 VKIVEDILRGK----KLKFKT----DSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCG 62
Query: 92 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---- 147
G I LA + + + + I+ AKE I KL+ N I+ DL
Sbjct: 63 YGVIGIA-LADEVKSTTMADINRRAIKLAKENI-----KLNNLDNYDIR-VVHSDLYENV 115
Query: 148 -NIKYDVIWIQWVLM---FILDEDII-KFLNLCKQILNKNGIIII 187
+ KY+ I ++++ + + K++L NG I +
Sbjct: 116 KDRKYNKII-----TNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 36.0 bits (83), Expect = 0.008
Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEI----LKDCDKLDK 133
+ + ++D+G G G I LL K+ K+ +++S + ++ + + D+ +
Sbjct: 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF 279
Query: 134 CYNVGIQDFKPEDLNIKYDVIW------IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
N + +P +++ + Q + D + + ++ L NG + I
Sbjct: 280 MINNALSGVEPF----RFNAVLCNPPFHQQHA---LTDNVAWEMFHHARRCLKINGELYI 332
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 36.1 bits (82), Expect = 0.009
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 13/142 (9%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
++ VLD+G G G +K+ + + ++Q ++ ++ D Y
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 136 NVGIQDF-----------KPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKN 182
+ K D + +D+ Q+V + + E L + L+
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148
Query: 183 GIIIIKDNVASGVKNEYDDEDS 204
G I + + + ++
Sbjct: 149 GYFIGTTPNSFELIRRLEASET 170
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 35.8 bits (82), Expect = 0.010
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 50 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 109
ML D + + +++ K K VLDVG G G +S AKH K +
Sbjct: 16 MLQ--------DTVRTLSYRNAIIQNKDLFKDKI-VLDVGCGTGILS-MFAAKHGAKHVI 65
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILDE 166
S IE AKE + + + ++ K ED+++ K D+I +W+ F+L E
Sbjct: 66 GVDMSSIIEMAKELVEL--NGFSDKITL-LRG-KLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 167 DIIKFLNLCKQ-ILNKNGIII 186
++ + + L + G+I
Sbjct: 122 SMMDTVLYARDHYLVEGGLIF 142
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 35.6 bits (82), Expect = 0.011
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 7/76 (9%)
Query: 32 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSD--PGKTRVLDVG 89
HY + + D + Y ++ + P ++D G
Sbjct: 70 HYGIGPVDRAAL---GDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDD-TLVDAG 125
Query: 90 AGIGRISKYLLAKHFD 105
G G + F
Sbjct: 126 CGRGGSMVM-AHRRFG 140
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 34.5 bits (79), Expect = 0.016
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
V+D G G + + LA K+ + + + + + + + + G
Sbjct: 22 DESI-VVDATMGNGNDTAF-LAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 79
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDED---------IIKFLNLCKQILNKNGIIII 187
++ ++ + + L ++ D ++ + L G + I
Sbjct: 80 ENLDH---YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 34.5 bits (80), Expect = 0.020
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
+L++G IG S A D + +E++ I+ AK+ + + + +
Sbjct: 74 NILEIGTAIG-YSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--HFENQVRIIEGN 130
Query: 142 ---FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ YD+I+I D KF + +L G++I DNV
Sbjct: 131 ALEQFENVNDKVYDMIFI--------DAAKAQSKKFFEIYTPLLKHQGLVIT-DNV 177
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 34.6 bits (79), Expect = 0.027
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 54 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 105
+ S + I + +S++ + K VLDVG+G G + +
Sbjct: 32 FDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKV-VLDVGSGTGILCMFAAKAGAR 90
Query: 106 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMF 162
K+ +E SS I +I+K +KLD + I+ K E++ + K D+I +W+
Sbjct: 91 KVIGIECSS--ISDYAVKIVKA-NKLDHVVTI-IKG-KVEEVELPVEKVDIIISEWMGYC 145
Query: 163 ILDEDIIKFLNLCKQ-ILNKNGIIIIK 188
+ E ++ + + L +G+I
Sbjct: 146 LFYESMLNTVLHARDKWLAPDGLIFPD 172
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.5 bits (77), Expect = 0.038
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 26/142 (18%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 138
+ LD+G G S LA ++ E ++ E + + + + K +
Sbjct: 72 KALDLGTFTG-YSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKP 129
Query: 139 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ + +DV + D E+ + C Q+L GI+ + V
Sbjct: 130 ALETLDELLAAGEAGTFDVAVV--------DADKENCSAYYERCLQLLRPGGILAV-LRV 180
Query: 192 -ASG--VKNEYDDEDSSVVRSL 210
G ++ D + VR+L
Sbjct: 181 LWRGKVLQPPKGDVAAECVRNL 202
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 33.3 bits (77), Expect = 0.040
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
V+ G G+G + + A+ ++ +++ +E A+ + D +D+
Sbjct: 59 LVVVPGDGLG-CASWWFARAISISSRVVMIDPDRDNVEHARRML-HDNGLIDRV------ 110
Query: 141 DFKPED-LNI-----KYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ + D L I D++ F+ D + L + L KN ++I N
Sbjct: 111 ELQVGDPLGIAAGQRDIDIL-------FM-DCDVFNGADVLERMNRCLAKNALLIA-VNA 161
Query: 192 -ASG-VKNEYDDEDSSVVRSL 210
G V ++D +++ +R
Sbjct: 162 LRRGSVAESHEDPETAALREF 182
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 33.8 bits (77), Expect = 0.042
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKF---IEQAKEEILKDCDK 130
PG ++L++G G G +S +LA ID+ + QA +L
Sbjct: 43 PG-EKILEIGCGQGDLSA-VLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG--P 98
Query: 131 LDKCYNVGIQDFKPEDLNI----KYDVIWIQWVLMFILDEDII 169
L V +DL +D + + L + + +
Sbjct: 99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANAL 141
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 33.4 bits (77), Expect = 0.045
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 25/116 (21%)
Query: 101 AKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 160
+KI L S A E + L + D+ ++
Sbjct: 108 NGLENKIFLKLGS------ALETL----QVLIDSKSAPSWASDFAFGPSSIDLFFL---- 153
Query: 161 MFILD---EDIIKFLNLCKQILNKNGIIIIKDNVA-SG--VKNEYDDEDSSVVRSL 210
D E+ + L ++L G++I DNV G + + + +R
Sbjct: 154 ----DADKENYPNYYPLILKLLKPGGLLIA-DNVLWDGSVADLSHQEPSTVGIRKF 204
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 33.4 bits (77), Expect = 0.047
Identities = 19/194 (9%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 33 YSEVTEY---YSNVPPTIDGMLNGYSSISDLDI-QTSNQFLSSLYCQKKSDPGKTRVLDV 88
+ + Y + + + + + Q L++L + + +
Sbjct: 5 FEYLRTYVESTTETDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGST-GAIAI 63
Query: 89 GAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ---DF 142
G + + + ++ S+ QAK + ++ + D
Sbjct: 64 TPAAG-LVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLLSRPLDV 121
Query: 143 KPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VK 196
N Y +++ D+ ++ +L + G +++ + G
Sbjct: 122 MSRLANDSYQLVFG--------QVSPMDLKALVDAAWPLLRRGGALVL-ADALLDGTIAD 172
Query: 197 NEYDDEDSSVVRSL 210
D D+ R
Sbjct: 173 QTRKDRDTQAARDA 186
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 33.2 bits (76), Expect = 0.050
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
PG+ +L+VGAG G + L ++ S + +
Sbjct: 36 PGE-SLLEVGAGTGYWLRRLPYPQKVGVEP---SEAMLAVGRR 74
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 33.3 bits (76), Expect = 0.050
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKE 122
R+ D+GAG G + A+ ++ L E+S + E A+
Sbjct: 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR 78
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 33.4 bits (77), Expect = 0.052
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
R+L++G IG S +A+ I +E+ + E+A + + L+ + D
Sbjct: 57 RILEIGTAIGY-SAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--GLESRIELLFGD 113
Query: 142 ----FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ +L +DV++I D +F ++ ++ G+I+ DNV
Sbjct: 114 ALQLGEKLELYPLFDVLFI--------DAAKGQYRRFFDMYSPMVRPGGLILS-DNV 161
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 33.5 bits (77), Expect = 0.054
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 15/116 (12%)
Query: 79 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
K +VLDVG G G +S ++ L + S+ +E ++ + +
Sbjct: 194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-----AANGVEGE 248
Query: 138 GIQDFKPEDLNIKYDVIW------IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++ ++D+I M + + + LN G + I
Sbjct: 249 VFASNVFSEVKGRFDMIISNPPFHDG---MQTSLDAAQTLIRGAVRHLNSGGELRI 301
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 33.0 bits (76), Expect = 0.062
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 138
+VL++G G S ++ ++ + + + + A ++ + K +G
Sbjct: 63 KVLELGTFTG-YSALAMSLALPDDGQVITCDINEGWTKHAHPYW-REAKQEHKIKLRLGP 120
Query: 139 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ E ++D I+I D + + + L +++ G+I I DN+
Sbjct: 121 ALDTLHSLLNEGGEHQFDFIFI--------DADKTNYLNYYELALKLVTPKGLIAI-DNI 171
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 33.2 bits (75), Expect = 0.065
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEI---------- 124
+PG VL+ G+G G +S +L ++ E + AK+
Sbjct: 102 DINPGD-TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS 160
Query: 125 -LKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 154
+++ + I + ++ +D +
Sbjct: 161 HVEEWPDNVDFIHKDISGATEDIKSLTFDAV 191
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 33.1 bits (75), Expect = 0.068
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYN 136
PG +L+VG G G +S Y+L + ++E+ +++A + + + D +
Sbjct: 110 PG-MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 168
Query: 137 VGIQDFKPED 146
I DF +
Sbjct: 169 SDIADFISDQ 178
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 32.0 bits (72), Expect = 0.17
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 63 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 122
Q+S ++S Y + G +V+D+ G+G L + +E++ + A+
Sbjct: 77 QSSGA-VTSSYKSRFIREGT-KVVDLTGGLGIDF-IALMSKASQGIYIERNDETAVAARH 133
Query: 123 --EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 156
+L + K +++ P D I++
Sbjct: 134 NIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 31.6 bits (72), Expect = 0.17
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 28/153 (18%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
+++G G S A KI ++ + + E I K +D +
Sbjct: 82 NTMEIGVYTG-YSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFREG 138
Query: 141 D--------FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKD 189
K E + YD I++ D ++ + + ++ G+I D
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFV--------DADKDNYLNYHKRLIDLVKVGGVIGY-D 189
Query: 190 NV-ASG-VKNEYDDEDSSVVRSLPQFCLLFSKA 220
N +G V D VR F L +KA
Sbjct: 190 NTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKA 222
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 31.5 bits (72), Expect = 0.20
Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 26/142 (18%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 138
+VL++G G S +A +I +Q AK+ + +K +G
Sbjct: 75 QVLEIGVFRG-YSALAMALQLPPDGQIIACDQDPNATAIAKK-YWQKAGVAEKISLRLGP 132
Query: 139 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
++ ++D+I+I D + ++ + +L + G+++I DNV
Sbjct: 133 ALATLEQLTQGKPLPEFDLIFI--------DADKRNYPRYYEIGLNLLRRGGLMVI-DNV 183
Query: 192 -ASG--VKNEYDDEDSSVVRSL 210
G + + + + V++
Sbjct: 184 LWHGKVTEVDPQEAQTQVLQQF 205
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 31.2 bits (71), Expect = 0.20
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
G T VLDVG G G L+K K+ ++ + + A E++ K N
Sbjct: 37 EGMT-VLDVGTGAGFYLP-YLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-----LGLKN 89
Query: 137 VGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
V + + + + D I++ + + + +KFL K++ + I D
Sbjct: 90 VEVLKSEENKIPLPDNTVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIID 143
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 31.0 bits (70), Expect = 0.23
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 80 PGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
G T V+D G G + +L L ++ + K I ++ L D + +D V
Sbjct: 22 EGDT-VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLID---RV 76
Query: 138 ----GIQDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIII 186
+ ++ + + D E I+ L+ ++L GII
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
Query: 187 I 187
+
Sbjct: 137 V 137
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 31.2 bits (70), Expect = 0.23
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 143
V D+GAG G +S L ++ +E + ++ E + + K +
Sbjct: 52 VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK------VFIGD 105
Query: 144 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 197
+ N + D++ + FL + + ++ V+
Sbjct: 106 VSEFNSRVDIVIMNPPFGSQRKHADRPFL---LKAFEISDVVYSIHLAKPEVRR 156
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 31.1 bits (70), Expect = 0.25
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 80 PGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
G R++D G G G + L K+ E+ +F + A+ + K L + +
Sbjct: 112 EGD-RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTI 168
Query: 138 GIQDFKPEDLNIKYDVI 154
++D D +
Sbjct: 169 KVRDISEGFDEKDVDAL 185
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 31.1 bits (71), Expect = 0.28
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 26/142 (18%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 138
+V+D+G G S + + + K AKE + DK +
Sbjct: 67 KVIDIGTFTG-YSAIAMGLALPKDGTLITCDVDEKSTALAKE-YWEKAGLSDKIGLRLSP 124
Query: 139 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 191
+ + +YD+I+I D + + ++L + G+I + DNV
Sbjct: 125 AKDTLAELIHAGQAWQYDLIYI--------DADKANTDLYYEESLKLLREGGLIAV-DNV 175
Query: 192 -ASG--VKNEYDDEDSSVVRSL 210
G E E++ ++R
Sbjct: 176 LRRGQVADEENQSENNQLIRLF 197
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 30.6 bits (70), Expect = 0.30
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 40/139 (28%)
Query: 77 KSDPGKTRVLDVGAGIGRI----SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
++ V DVG G G I + L AK D+ ++S + A+E
Sbjct: 56 RAMVKPLTVADVGTGSG-ILAIAAHKLGAKSVLATDISDES---MTAAEE---------- 101
Query: 133 KCYNV---GIQDFK------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 183
N GI D D++ K+D+ ++ IL E ++ + LN++G
Sbjct: 102 ---NAALNGIYDIALQKTSLLADVDGKFDL-----IVANILAEILLDLIPQLDSHLNEDG 153
Query: 184 IIIIKDNVASGVKNEYDDE 202
+I SG+ +
Sbjct: 154 QVI-----FSGIDYLQLPK 167
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 30.3 bits (69), Expect = 0.45
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 26/122 (21%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
+ ++VG G S L A KI ++ + E I K ++ N
Sbjct: 73 KTIEVGVFTG-YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--GVEHKINFIES 129
Query: 141 D--------FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKD 189
D + ++ YD ++ D + IK+ +++ GI+ D
Sbjct: 130 DAMLALDNLLQGQESEGSYDFGFV--------DADKPNYIKYHERLMKLVKVGGIVAY-D 180
Query: 190 NV 191
N
Sbjct: 181 NT 182
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 30.2 bits (68), Expect = 0.48
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
+LDVG+ + L+ + E + A + + + +K
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNV-EAHGLKEKIQVRL 72
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + VI I + + I + L L +I+
Sbjct: 73 ANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 30.4 bits (69), Expect = 0.56
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 25/125 (20%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKC 134
S P RVL +G G G + + +L +H + DL++ + +EQ+K+ + L D
Sbjct: 92 SHPKPERVLIIGGGDGGVLREVL-RHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPR 150
Query: 135 YNVGIQD---FKPEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNK 181
V + D F + + YDV+ I+D D F +IL
Sbjct: 151 ATVRVGDGLAFVRQTPDNTYDVV--------IIDTTDPAGPASKLFGEAFYKDVLRILKP 202
Query: 182 NGIII 186
+GI
Sbjct: 203 DGICC 207
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 29.9 bits (66), Expect = 0.68
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI---- 139
RVL+VG G+ + + D+ ++E + ++ ++ + + V
Sbjct: 63 RVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD------WAPRQTHKVIPLKGL 116
Query: 140 -QDFKPEDLNIKYDVI----WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 194
+D P + +D I + + N ++L G++ + + G
Sbjct: 117 WEDVAPTLPDGHFDGILYDTYPLSEETW-HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 175
Query: 195 --VKNEYDDEDSSVVR 208
+K++Y D
Sbjct: 176 ELMKSKYSDITIMFEE 191
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 29.5 bits (67), Expect = 0.73
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 160 LMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VKNEYDDEDSSVVRSL 210
+FI D ++ + ++ +II DNV G + N +D +R
Sbjct: 136 FIFI-DADKQNNPAYFEWALKLSRPGTVIIG-DNVVREGEVIDNTSNDPRVQGIRRF 190
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 29.6 bits (67), Expect = 0.78
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 150 KYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VKNEYDDED 203
+D+I+I D + +L + +II DNV G V + DE
Sbjct: 136 AFDLIFI--------DADKPNNPHYLRWALRYSRPGTLIIG-DNVVRDGEVVNPQSADER 186
Query: 204 SSVVRSL 210
VR
Sbjct: 187 VQGVRQF 193
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 29.6 bits (66), Expect = 0.84
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 24/113 (21%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
+ P V D G G R++ + DL + CD
Sbjct: 63 RQRPASLVVADFGCGDCRLA-SSIRNPVHCFDLASLDPRVTV---------CD----MAQ 108
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
V ++D DV LM +I FL ++L G++ + +
Sbjct: 109 VPLED-------ESVDVAVFCLSLMGT---NIRDFLEEANRVLKPGGLLKVAE 151
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 29.2 bits (65), Expect = 0.90
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 77 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 136
+ G V+D G G G ++ + + + IE AK C
Sbjct: 47 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN----------CGG 96
Query: 137 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 178
V +++ KYD + ++ F++ +
Sbjct: 97 VNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFET 138
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 29.6 bits (66), Expect = 0.93
Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 84 RVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142
V+D+ AGIG + L + +E++ E I + +D
Sbjct: 122 VVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 202
+ +D V+M + KFL+ + L G+I + VA K Y+
Sbjct: 182 ELKD--------VADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETVAE--KIMYERP 230
Query: 203 DSSVVRSLPQFCLLFSKANLKCVKS 227
+ + ++ +K
Sbjct: 231 IERLKFYAEKNGYKLIDYEVRKIKK 255
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.8 bits (66), Expect = 0.98
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 21/165 (12%)
Query: 36 VTEYYSNVPPTIDGMLNGYSSISDLDIQ-TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGR 94
+ + Y++ + LN Y S TS ++ + + K +D+G+G+G+
Sbjct: 129 LQQVYNHSVTDPEK-LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL-FVDLGSGVGQ 186
Query: 95 I----SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDL 147
+ + KH ++ + +K+ E E K K Y + DF E+
Sbjct: 187 VVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW 246
Query: 148 NIKY---DVIWIQWVLMFILDEDIIKFLNLCKQILN--KNGIIII 187
+ VI++ F ++ L K+ K G I+
Sbjct: 247 RERIANTSVIFVNN---FAFGPEVDHQL---KERFANMKEGGRIV 285
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 29.6 bits (65), Expect = 1.0
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 17/128 (13%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLL---AKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 132
+ +G G G I +L ++ + ++S K E+ L
Sbjct: 404 GADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLK 463
Query: 133 KCYNVG--------------IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 178
+ + + D+I + + F +E + L+
Sbjct: 464 YMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGF 523
Query: 179 LNKNGIII 186
L I I
Sbjct: 524 LKPTTISI 531
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.4
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 100 LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY------NVGIQDFKPEDLNIKYDV 153
+ + + +++ +E + D D K Y + GI+ +PE N Y+
Sbjct: 860 FISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAK-YETSILEHSGIRLIEPELFN-GYNP 917
Query: 154 IWIQWVLMFILDEDIIKF 171
+ + I++ED+ F
Sbjct: 918 EKKEMIQEVIVEEDLEPF 935
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 28.7 bits (64), Expect = 1.4
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
P R+LDVG+ + +LL + D E + + A + + + L +V
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE--HGLTSKIDVR 77
Query: 139 IQD-FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ + + D I I + + I LN L +++
Sbjct: 78 LANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 28.7 bits (65), Expect = 1.6
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 140
VL VG G G I + L K+ + ID+ E IE +K DK NV I+
Sbjct: 81 NVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 139
Query: 141 D-FK-PEDLNIKYDVIWIQWVLMFILD--------EDIIK--FLNLCKQILNKNGIII 186
D K E++ YDVI I+D E + F L NG +
Sbjct: 140 DASKFLENVTNTYDVI--------IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 189
>1xj5_A Spermidine synthase 1; structural genomics, protein structure
initiative, CESG, AT1G23820, putrescine aminopropyl
transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP:
c.66.1.17 PDB: 2q41_A
Length = 334
Score = 28.9 bits (65), Expect = 1.7
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 84 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 140
+VL +G G G + + + +H ++ID+ E ++ +K+ D N+ I
Sbjct: 123 KVLVIGGGDGGVLREVA-RHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG 181
Query: 141 D---FKPEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNKNGIII 186
D F YD + I+D D I F + L G++
Sbjct: 182 DGVAFLKNAAEGSYDAV--------IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC 232
>2o07_A Spermidine synthase; structural genomics, structural genomics
consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo
sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
3rw9_A*
Length = 304
Score = 28.8 bits (65), Expect = 1.9
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 24/118 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 140
+VL +G G G + + ++ KH + + E I+ +K+ + + +
Sbjct: 98 KVLIIGGGDGGVLREVV-KHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG 156
Query: 141 D-FK-PEDLNIKYDVIWIQWVLMFILD--------EDIIK--FLNLCKQILNKNGIII 186
D F+ + +DVI I D E + K + L K L ++G++
Sbjct: 157 DGFEFMKQNQDAFDVI--------ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLC 206
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.3 bits (63), Expect = 2.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 74 CQKKSDPGKTRVLDVGAGIGRISKYLLAKH 103
+++ D T VLD+G G G +
Sbjct: 78 LRERLDDKATAVLDIGCGEGYYTHAFADAL 107
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 28.4 bits (64), Expect = 2.2
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 140
VL VG G G I + L K+ + ID+ E IE +K DK NV I+
Sbjct: 119 NVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 177
Query: 141 D-FK-PEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNKNGIII 186
D K E++ YDVI I+D D I F L NG +
Sbjct: 178 DASKFLENVTNTYDVI--------IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 227
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis
elegans} SCOP: c.66.1.17
Length = 314
Score = 28.1 bits (63), Expect = 2.7
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 24/118 (20%)
Query: 84 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 140
RVL +G G G I + +L KH +K+ + E I+ AK+ + ++
Sbjct: 111 RVLIIGGGDGGILREVL-KHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG 169
Query: 141 D-FK-PEDLNIKYDVIWIQWVLMFILD--------EDIIK--FLNLCKQILNKNGIII 186
D F+ ++ ++DVI I D E + + L + L ++GI+
Sbjct: 170 DGFEFLKNHKNEFDVI--------ITDSSDPVGPAESLFGQSYYELLRDALKEDGILS 219
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 28.2 bits (62), Expect = 2.8
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 68 FLSSLYCQKKSDPGK-TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126
L L + ++D+G+G HF+ I + + F+E ++E+ +
Sbjct: 57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTD----FLEVNRQELGR 112
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.9 bits (62), Expect = 2.9
Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 138
R+ D+G+ + + + E + A++++ + ++
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRK 78
Query: 139 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
+ D I I + I L L +I+
Sbjct: 79 GNGLAVIEKKDAIDTIVIAG----MGGTLIRTILEEGAAKLAGVTKLIL 123
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.0 bits (62), Expect = 3.5
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 76 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKL 131
P + +VLD+ G+G S K + LLE+ S + + ++
Sbjct: 53 TYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQI 109
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 27.7 bits (61), Expect = 3.5
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 68 FLSSLYCQKKSDPGK-TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 126
L +L+ K ++D+G+G + F +I + + + +Q E+ K
Sbjct: 42 LLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSD----YTDQNLWELQK 97
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 27.6 bits (62), Expect = 3.6
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 28/120 (23%)
Query: 84 RVLDVGAGIG----RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVG 138
VL VG G G I K+ K L++ K IE +K+ + KL D +V
Sbjct: 78 HVLVVGGGDGGVIREILKH---PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ 134
Query: 139 IQD-FK-PEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNKNGIII 186
+ D F +YDVI ++D + + F + L ++GI +
Sbjct: 135 VDDGFMHIAKSENQYDVI--------MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFV 186
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 27.2 bits (61), Expect = 3.9
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDF 142
V+DVG G G ++ +AK + ++ + A E ++ K + N I+
Sbjct: 38 VVVDVGCGSGGMTVE-IAKRCKFVYAIDYL----DGAIEVTKQNLAKFN-IKNCQIIKGR 91
Query: 143 KPEDL-NIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIII 187
+ L ++++ FI ++I K + + K I+
Sbjct: 92 AEDVLDKLEFNKA-------FIGGTKNIEKIIEILD--KKKINHIVA 129
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural
genomics, PSI, protein structure initiative; 1.50A
{Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Length = 296
Score = 27.2 bits (61), Expect = 4.7
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 29/121 (23%)
Query: 84 RVLDVGAGIG----RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVG 138
+VL +G G G + K+ +K L E IE A++ + + D +
Sbjct: 93 KVLIIGGGDGGTLREVLKH---DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV 149
Query: 139 IQD-FK-PEDLNIKYDVIWIQWVLMFILD---------EDIIK--FLNLCKQILNKNGII 185
I + + ++DVI I+D + F C L ++G+
Sbjct: 150 IANGAEYVRKFKNEFDVI--------IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVF 201
Query: 186 I 186
Sbjct: 202 S 202
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 56 SISDLDIQTSNQFLSSLYCQK-KSDPGKTRVLDVGAGIG 93
++ + FL SL + G RVLD+G G G
Sbjct: 54 ALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAG 92
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 26.8 bits (60), Expect = 6.3
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 28/123 (22%)
Query: 84 RVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKE-------EILKDCDKLDKCY 135
RVL +G G G + +L +H D++ ++E I +K+ + + +
Sbjct: 78 RVLVIGGGDGGTVREVL-QHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA 136
Query: 136 NVGIQD-FKPEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNKNGI 184
+ I D F+ N +DVI I D D + +F LN GI
Sbjct: 137 KLTIGDGFEFIKNNRGFDVI--------IADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 185 III 187
+
Sbjct: 189 YVT 191
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 26.9 bits (59), Expect = 7.3
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 10/77 (12%)
Query: 78 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 137
P RVL+ G + H + EI L
Sbjct: 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGV----------EIDPKALDLPPWAEG 85
Query: 138 GIQDFKPEDLNIKYDVI 154
+ DF + +D+I
Sbjct: 86 ILADFLLWEPGEAFDLI 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.400
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,862,136
Number of extensions: 229137
Number of successful extensions: 756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 174
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)