Query psy8371
Match_columns 528
No_of_seqs 286 out of 2350
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 16:56:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00005 phosphoglycerate kina 100.0 5E-131 1E-135 1035.3 38.7 401 1-401 1-413 (417)
2 COG0126 Pgk 3-phosphoglycerate 100.0 7E-131 1E-135 1012.6 32.2 376 4-401 3-389 (395)
3 KOG1367|consensus 100.0 5E-130 1E-134 972.0 32.2 400 1-401 1-411 (416)
4 cd00318 Phosphoglycerate_kinas 100.0 3E-129 7E-134 1017.6 37.4 383 8-401 1-394 (397)
5 PLN03034 phosphoglycerate kina 100.0 5E-129 1E-133 1027.1 35.5 381 2-401 76-472 (481)
6 PLN02282 phosphoglycerate kina 100.0 9E-129 2E-133 1014.1 35.5 379 4-401 6-397 (401)
7 PRK00073 pgk phosphoglycerate 100.0 4E-127 9E-132 999.6 35.7 374 5-401 1-386 (389)
8 PF00162 PGK: Phosphoglycerate 100.0 8E-125 2E-129 983.9 31.9 371 7-394 1-384 (384)
9 PRK13962 bifunctional phosphog 100.0 3E-123 7E-128 1022.2 36.4 394 3-417 1-408 (645)
10 COG0545 FkpA FKBP-type peptidy 99.9 5.3E-25 1.1E-29 210.7 10.9 111 378-503 95-205 (205)
11 KOG0544|consensus 99.9 7.1E-25 1.5E-29 184.7 9.4 105 391-503 3-108 (108)
12 KOG0549|consensus 99.9 1.3E-23 2.8E-28 197.4 10.7 104 397-508 78-181 (188)
13 PRK11570 peptidyl-prolyl cis-t 99.8 1.5E-20 3.2E-25 183.5 12.2 103 391-503 104-206 (206)
14 TIGR03516 ppisom_GldI peptidyl 99.8 4.6E-20 1E-24 176.1 12.2 114 377-504 62-177 (177)
15 KOG0552|consensus 99.8 3.9E-20 8.6E-25 180.9 10.8 104 391-503 122-226 (226)
16 PF00254 FKBP_C: FKBP-type pep 99.8 5E-18 1.1E-22 144.6 11.6 91 402-500 3-94 (94)
17 PRK10902 FKBP-type peptidyl-pr 99.8 4.7E-18 1E-22 171.9 12.9 106 391-507 148-253 (269)
18 KOG0543|consensus 99.5 5E-13 1.1E-17 139.8 13.3 112 391-514 86-202 (397)
19 PRK15095 FKBP-type peptidyl-pr 99.4 1.1E-12 2.4E-17 123.1 7.3 72 403-482 4-75 (156)
20 COG1047 SlpA FKBP-type peptidy 99.1 1.1E-10 2.4E-15 110.5 7.7 72 403-482 2-73 (174)
21 PRK10737 FKBP-type peptidyl-pr 99.0 4.2E-10 9.1E-15 109.1 7.3 71 403-482 2-72 (196)
22 KOG0543|consensus 98.9 2.9E-09 6.2E-14 111.9 6.2 81 398-501 2-83 (397)
23 TIGR00115 tig trigger factor. 98.5 1.5E-06 3.2E-11 93.3 12.5 92 399-506 142-233 (408)
24 PRK01490 tig trigger factor; P 98.3 5.7E-06 1.2E-10 89.5 12.5 88 402-505 156-243 (435)
25 COG0544 Tig FKBP-type peptidyl 98.0 2.8E-05 6E-10 84.5 10.9 84 404-505 158-243 (441)
26 KOG0545|consensus 96.3 0.0029 6.3E-08 63.6 3.1 78 389-473 10-90 (329)
27 KOG0549|consensus 95.7 0.0084 1.8E-07 57.6 3.0 57 438-504 1-57 (188)
28 PRK02006 murD UDP-N-acetylmura 72.4 12 0.00025 41.4 7.8 53 183-235 377-430 (498)
29 TIGR01663 PNK-3'Pase polynucle 64.8 1.5E+02 0.0032 33.6 14.4 79 191-269 365-450 (526)
30 PRK06988 putative formyltransf 57.0 40 0.00088 35.2 7.8 79 31-114 13-91 (312)
31 PRK02705 murD UDP-N-acetylmura 55.8 45 0.00099 36.1 8.3 42 194-235 349-391 (459)
32 PRK00683 murD UDP-N-acetylmura 55.6 43 0.00093 36.1 8.1 49 184-232 303-352 (418)
33 PRK05826 pyruvate kinase; Prov 52.7 2.1E+02 0.0045 31.9 12.8 209 31-271 17-278 (465)
34 PRK00005 fmt methionyl-tRNA fo 50.4 67 0.0015 33.4 8.2 84 31-116 11-94 (309)
35 TIGR03590 PseG pseudaminic aci 49.8 3E+02 0.0064 28.0 15.7 178 17-216 1-194 (279)
36 TIGR00460 fmt methionyl-tRNA f 47.6 76 0.0016 33.2 8.1 82 31-114 11-92 (313)
37 COG0223 Fmt Methionyl-tRNA for 47.0 79 0.0017 33.3 8.0 74 31-106 12-85 (307)
38 PRK00553 ribose-phosphate pyro 46.7 59 0.0013 34.5 7.2 79 12-91 53-139 (332)
39 COG1433 Uncharacterized conser 44.0 58 0.0013 29.6 5.7 74 14-104 33-109 (121)
40 PRK05337 beta-hexosaminidase; 44.0 85 0.0018 33.3 7.9 102 8-111 164-283 (337)
41 PRK04308 murD UDP-N-acetylmura 42.7 80 0.0017 34.2 7.7 50 184-233 333-383 (445)
42 KOG3350|consensus 42.0 27 0.00059 34.1 3.4 38 12-51 111-172 (217)
43 PRK06801 hypothetical protein; 40.5 4.4E+02 0.0096 27.4 15.6 174 39-235 38-243 (286)
44 PF13344 Hydrolase_6: Haloacid 37.6 53 0.0011 28.4 4.3 71 25-107 13-86 (101)
45 PRK01259 ribose-phosphate pyro 37.1 94 0.002 32.5 6.8 65 12-76 44-116 (309)
46 PRK07199 phosphoribosylpyropho 36.1 1.2E+02 0.0027 31.6 7.5 63 12-75 46-116 (301)
47 KOG3729|consensus 35.1 15 0.00033 41.1 0.6 58 18-84 330-387 (715)
48 COG0647 NagD Predicted sugar p 35.1 1.2E+02 0.0027 31.2 7.1 68 31-107 28-97 (269)
49 cd03409 Chelatase_Class_II Cla 33.8 41 0.0009 28.2 3.0 64 47-112 2-70 (101)
50 PLN02369 ribose-phosphate pyro 33.2 1.3E+02 0.0028 31.4 7.1 65 12-76 35-107 (302)
51 PF08645 PNK3P: Polynucleotide 32.9 52 0.0011 30.9 3.8 51 31-83 33-86 (159)
52 PRK03803 murD UDP-N-acetylmura 30.7 1.9E+02 0.0042 31.3 8.3 43 193-235 344-387 (448)
53 PRK04923 ribose-phosphate pyro 30.1 1.7E+02 0.0036 30.9 7.3 65 12-76 50-123 (319)
54 cd04814 PA_M28_1 PA_M28_1: Pro 29.9 1.2E+02 0.0027 28.2 5.7 45 9-53 42-99 (142)
55 PF13793 Pribosyltran_N: N-ter 29.7 1E+02 0.0023 27.5 5.0 64 12-75 44-114 (116)
56 PRK00934 ribose-phosphate pyro 29.6 2E+02 0.0043 29.7 7.7 71 12-84 43-121 (285)
57 PLN02334 ribulose-phosphate 3- 29.1 5.6E+02 0.012 25.2 11.8 45 32-80 22-67 (229)
58 PLN02285 methionyl-tRNA formyl 29.1 1.6E+02 0.0035 31.1 7.1 74 31-107 17-99 (334)
59 COG0626 MetC Cystathionine bet 28.9 1.2E+02 0.0025 33.1 6.1 69 31-110 89-158 (396)
60 PRK02269 ribose-phosphate pyro 28.4 1.9E+02 0.0042 30.4 7.4 65 12-76 49-121 (320)
61 TIGR01087 murD UDP-N-acetylmur 27.6 2E+02 0.0043 30.9 7.7 55 181-235 319-374 (433)
62 KOG1014|consensus 26.6 99 0.0021 32.6 4.8 66 36-111 66-135 (312)
63 PRK08125 bifunctional UDP-gluc 26.5 2.2E+02 0.0048 32.7 8.2 81 31-116 11-91 (660)
64 PRK10834 vancomycin high tempe 25.9 2.1E+02 0.0046 29.0 6.9 71 189-261 40-133 (239)
65 PTZ00145 phosphoribosylpyropho 25.4 1.9E+02 0.0042 32.0 7.0 81 12-93 163-251 (439)
66 TIGR02536 eut_hyp ethanolamine 24.7 7E+02 0.015 24.8 10.8 126 177-329 4-137 (207)
67 cd01895 EngA2 EngA2 subfamily. 24.0 2.5E+02 0.0055 24.7 6.6 39 18-56 88-126 (174)
68 COG0737 UshA 5'-nucleotidase/2 23.7 46 0.001 37.1 1.9 28 31-58 191-218 (517)
69 PRK10444 UMP phosphatase; Prov 23.5 2.7E+02 0.0058 28.0 7.2 56 12-82 7-62 (248)
70 COG2054 Uncharacterized archae 23.0 1.1E+02 0.0024 30.1 4.0 49 293-348 108-157 (212)
71 PF02875 Mur_ligase_C: Mur lig 22.8 1.3E+02 0.0029 24.8 4.2 35 192-226 39-79 (91)
72 cd06259 YdcF-like YdcF-like. Y 22.6 4.8E+02 0.01 23.4 8.1 70 196-266 2-95 (150)
73 KOG3420|consensus 22.5 1.4E+02 0.0031 28.5 4.5 35 318-352 114-151 (185)
74 cd07409 MPP_CD73_N CD73 ecto-5 22.4 53 0.0012 33.5 1.9 27 31-57 170-196 (281)
75 PRK14106 murD UDP-N-acetylmura 22.4 3.1E+02 0.0068 29.5 8.0 41 194-234 347-388 (450)
76 cd08162 MPP_PhoA_N Synechococc 22.2 77 0.0017 33.2 3.1 21 34-54 198-218 (313)
77 cd04240 AAK_UC AAK_UC: Unchara 22.1 6E+02 0.013 24.7 9.1 116 193-333 24-144 (203)
78 COG0634 Hpt Hypoxanthine-guani 21.8 2.1E+02 0.0046 27.8 5.7 46 11-59 89-136 (178)
79 PLN02716 nicotinate-nucleotide 21.7 2.4E+02 0.0052 29.8 6.5 53 65-118 185-246 (308)
80 PLN02297 ribose-phosphate pyro 21.5 2.2E+02 0.0048 30.2 6.3 64 12-76 63-133 (326)
81 PRK02472 murD UDP-N-acetylmura 21.3 2.9E+02 0.0063 29.7 7.5 41 193-234 342-383 (447)
82 COG1560 HtrB Lauroyl/myristoyl 21.2 2.3E+02 0.0051 29.8 6.4 73 31-106 110-198 (308)
83 cd04820 PA_M28_1_1 PA_M28_1_1: 21.1 2E+02 0.0044 26.7 5.2 41 10-50 45-92 (137)
84 cd04821 PA_M28_1_2 PA_M28_1_2: 21.0 2.4E+02 0.0052 26.8 5.8 45 7-54 42-102 (157)
85 PRK10799 metal-binding protein 20.8 84 0.0018 31.6 3.0 26 61-86 218-243 (247)
86 PRK02458 ribose-phosphate pyro 20.3 3.1E+02 0.0067 29.0 7.1 65 12-76 53-125 (323)
No 1
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=5.4e-131 Score=1035.34 Aligned_cols=401 Identities=69% Similarity=1.068 Sum_probs=378.5
Q ss_pred CCCCcccccccc--cCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHH
Q psy8371 1 MALNKLSVDLLN--LAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKP 68 (528)
Q Consensus 1 ~~~~~~ti~d~~--~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~ 68 (528)
|.|+++||+|+| ++|||||||||||||+++ +++|||+||+++|||+|||+||||||+|++++++||+|
T Consensus 1 ~~~~~~ti~d~~~~~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SHlGRP~g~~~~~~SL~~ 80 (417)
T PTZ00005 1 MLSNKLGIDDVDDQLKGKRVLIRVDFNVPIKEGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGRRVEKYSLKP 80 (417)
T ss_pred CCcccCcHHHhhhccCCCEEEEEecCCCCCcCCcCCChHhHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCcCcccCHHH
Confidence 778999999999 999999999999999953 99999999999999769999999999987788999999
Q ss_pred HHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCE
Q psy8371 69 VAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDI 148 (528)
Q Consensus 69 ~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~Di 148 (528)
||++|+++|+++|.|++||+|+.++++|++|++||||||||||||++|+.+..+.+..++++++++++.||++||+|||+
T Consensus 81 va~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~Di 160 (417)
T PTZ00005 81 VVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDI 160 (417)
T ss_pred HHHHHHHHHCCCeEECCCCCCHHHHHHHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCE
Confidence 99999999999999999999999999999999999999999999999987543434445677888899999999999999
Q ss_pred EEecccccccccCcccccccccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHH
Q psy8371 149 YVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGM 228 (528)
Q Consensus 149 yVnDAF~~aHR~haS~~g~~~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~m 228 (528)
|||||||+|||+|||++||+.+++|||+||||||++|++++++|+||++||+|||||||||.+|+||+++||+|++||+|
T Consensus 161 yVNDAFg~aHR~haS~~gi~~~~s~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~m 240 (417)
T PTZ00005 161 YVNDAFGTAHRAHSSMVGVDLPVKVAGFLMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGM 240 (417)
T ss_pred EEecchhhhhhhcccccccCCccchhhHHHHHHHHHHHHHhcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHH
Confidence 99999999999999999999755899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhH
Q psy8371 229 SYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKS 308 (528)
Q Consensus 229 a~tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~T 308 (528)
|||||+|.+|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.++++..+....+||+|||++||||+|
T Consensus 241 a~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~T 320 (417)
T PTZ00005 241 AFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKS 320 (417)
T ss_pred HHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHH
Confidence 99999995589999999999999999999999999999999999999999998888766663345799999999999999
Q ss_pred HHHHHHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcch
Q psy8371 309 RELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASL 388 (528)
Q Consensus 309 i~~~~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~l 388 (528)
++.|+++|++|+||||||||||||+++|+.||++|+++++++++++++||+|||||++|++++|+.++|+|+||||||+|
T Consensus 321 i~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia~~t~~~a~sivGGGdt~aAi~~~g~~~~~shvSTGGGA~L 400 (417)
T PTZ00005 321 IEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKATEKGAITIVGGGDTASLVEKTGAANKVSHVSTGGGASL 400 (417)
T ss_pred HHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCCceEcCchHHHH
Confidence 99999999999999999999999999999999999999998776778999999999999999999999999999999999
Q ss_pred hhhhhhccccCCC
Q psy8371 389 ELLEGKIKEKGFG 401 (528)
Q Consensus 389 e~L~~k~Lp~g~G 401 (528)
+||+|++||+.+.
T Consensus 401 e~LeGk~LPgv~a 413 (417)
T PTZ00005 401 ELLEGKELPGVVA 413 (417)
T ss_pred HHHcCCCcchHHH
Confidence 9999999999763
No 2
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-131 Score=1012.58 Aligned_cols=376 Identities=56% Similarity=0.871 Sum_probs=357.3
Q ss_pred CcccccccccCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHH
Q psy8371 4 NKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEEL 73 (528)
Q Consensus 4 ~~~ti~d~~~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L 73 (528)
.++++.|.+++||||||||||||||++ +++|||+||+++||| |||+||||||++ +++++||+|||++|
T Consensus 3 ~~~~~~d~~~~gK~VlvRvD~NvP~~dG~I~dd~RI~a~lpTIk~l~~~ga~-Vvl~SHlGRPk~-~~~~~SL~pva~~L 80 (395)
T COG0126 3 MKKTILDLDLAGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEKGAK-VVLLSHLGRPKE-YSDKTSLEPVAKRL 80 (395)
T ss_pred ccchhhhhcccCCEEEEEeccCCcccCCeeCCcHHHHHhhHHHHHHHhCCCe-EEEEecCCCCCC-CCCcccHHHHHHHH
Confidence 456778888999999999999999985 999999999999999 999999999987 78999999999999
Q ss_pred HHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEecc
Q psy8371 74 KTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDA 153 (528)
Q Consensus 74 ~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDA 153 (528)
+++|+++|+|++||+|++++++|++|++|||+||||+|||++|+.+ ++++++.|+++||+|||+|||||
T Consensus 81 s~ll~~~V~f~~d~~g~~a~~~v~~l~~GevlLLEN~RF~~~E~~~-----------d~~~~~~l~k~la~l~DvfVnDA 149 (395)
T COG0126 81 SELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVRFYSEEEKN-----------DEEARTELVKKLASLGDVFVNDA 149 (395)
T ss_pred HHhcCCceEecccccCHHHHHHHhccCCCcEEEEeeccccccccCc-----------chhhHHHHHHHHHhhcCEEEech
Confidence 9999999999999999999999999999999999999999999843 34567899999999999999999
Q ss_pred cccccccCccccccc-ccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHHHH
Q psy8371 154 FGTAHRAHSSMLGEG-FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTF 232 (528)
Q Consensus 154 F~~aHR~haS~~g~~-~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~tF 232 (528)
||||||+|||+|||+ +.|+|||+||||||++|++++++|+||+++|+|||||||||++|+||+++||+|||||+|||||
T Consensus 150 FgtAHRahaS~~g~~~~lps~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tF 229 (395)
T COG0126 150 FGTAHRAHASTVGFAKFLPSAAGFLMEKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTF 229 (395)
T ss_pred hHHHHhhccchhhhhhhchhhhhHHHHHHHHHHHHHhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHH
Confidence 999999999999998 5579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHH
Q psy8371 233 LKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELF 312 (528)
Q Consensus 233 l~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~ 312 (528)
|+| +|++||+|++|.+..+.|++|++++++ +|+||+|++|+++|+.+.....+. +||++||++||||+|++.|
T Consensus 230 l~A-~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I~lPvD~~v~~~f~~~~~~~~~~---~i~~~~~~lDIGp~Ti~~~ 302 (395)
T COG0126 230 LKA-QGYDVGKSLVEFDLIDGAKELLEKAKD---KIVLPVDVVVAKEFSRDAPATVKL---EIPDDLMILDIGPKTIELF 302 (395)
T ss_pred HHH-hccccchHHHHHHHHHHHHHHHHHhCC---cEECcceeEEcccccccccccccc---CCCCCccccccCHHHHHHH
Confidence 999 999999999999999999999988877 799999999999998877665443 7999999999999999999
Q ss_pred HHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhhhh
Q psy8371 313 KEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLE 392 (528)
Q Consensus 313 ~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~L~ 392 (528)
+++|++|+||||||||||||+++|+.||++++++++++ ++++||+|||||++|++++|+.++|+|+||||||+|+||+
T Consensus 303 ~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~~--~~a~SiiGGGdt~aAi~~~G~~d~~shISTGGGAsLe~le 380 (395)
T COG0126 303 AEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAKS--SGAFSIIGGGDTAAAIDKLGLADKISHISTGGGASLEFLE 380 (395)
T ss_pred HHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHhc--CCCeEEECCcHHHHHHHHcCccccCceEecCchHHHHHhc
Confidence 99999999999999999999999999999999999975 4689999999999999999999999999999999999999
Q ss_pred hhccccCCC
Q psy8371 393 GKIKEKGFG 401 (528)
Q Consensus 393 ~k~Lp~g~G 401 (528)
||.||+.+.
T Consensus 381 Gk~LPgv~a 389 (395)
T COG0126 381 GKELPGVEA 389 (395)
T ss_pred CCCcchHHH
Confidence 999999764
No 3
>KOG1367|consensus
Probab=100.00 E-value=4.8e-130 Score=972.03 Aligned_cols=400 Identities=70% Similarity=1.108 Sum_probs=385.7
Q ss_pred CCC-CcccccccccCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHH
Q psy8371 1 MAL-NKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPV 69 (528)
Q Consensus 1 ~~~-~~~ti~d~~~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~ 69 (528)
|+. +++||+++|++|||||+||||||||++ +++|||+|++++|+|.||||||||||+|.++++|||+|+
T Consensus 1 m~~~~klti~~~dl~GKrVf~RVDfNVPl~d~~Itnn~RI~aalPtIky~l~~~~k~VvL~SHLGRP~G~~~~kySL~Pv 80 (416)
T KOG1367|consen 1 MSLSSKLTIDNLDLKGKRVFIRVDFNVPLKDNKITNNQRIVAALPTIKYLLSNGAKSVVLMSHLGRPKGVRNKKYSLAPV 80 (416)
T ss_pred CCcccccccccccccCcEEEEEEeccccccCCeecccceeeecccHHHHHHhCCCcEEEEhhhcCCCCCCCCccccccch
Confidence 444 789999999999999999999999975 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEE
Q psy8371 70 AEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIY 149 (528)
Q Consensus 70 a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~Diy 149 (528)
|.+|+.+||.+|.|.+||+|+++++++++..+|.|+||||||||.|||+++.++...++ ++|+...+|++.|++|+|||
T Consensus 81 a~eLk~lLg~~v~flddCvg~eVe~a~~~p~~G~viLLENlRfy~eEEg~~~~~~~~~~-a~~~~v~~fr~~l~~l~Dvy 159 (416)
T KOG1367|consen 81 APELKSLLGKEVVFLDDCVGPEVEKAVASPAPGSVILLENLRFYVEEEGKGKDDSGKKV-ADPAKVKEFRASLASLGDVY 159 (416)
T ss_pred HHHHHHHhCcceeeecccccHHHHHHhcCCCCCcEEEeecceeehhhhcCCcccccccc-CCHHHHHHHHHHHHhhccEE
Confidence 99999999999999999999999999999999999999999999999998766654444 89998999999999999999
Q ss_pred EecccccccccCcccccccccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHH
Q psy8371 150 VNDAFGTAHRAHSSMLGEGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMS 229 (528)
Q Consensus 150 VnDAF~~aHR~haS~~g~~~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma 229 (528)
|||||||+||+|+||+|+.++.+++||||+|||+++.+++++|.|||+||+||+||+|||++|+||+++||.+||||+||
T Consensus 160 VnDAFGtaHRahsSm~g~~~~~~~aGfLl~KEL~yf~kalenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMa 239 (416)
T KOG1367|consen 160 VNDAFGTAHRAHSSMVGVGLPQSAAGFLLQKELDYFAKALENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMA 239 (416)
T ss_pred eecccccchhccccccccCCchhhhhHHHHHHHHHHHHHHcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCcee
Confidence 99999999999999999998879999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHH
Q psy8371 230 YTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSR 309 (528)
Q Consensus 230 ~tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti 309 (528)
||||++..|++||+|++|++..+.+++|+++|++++++|+||+||++++.|.+++....++..+.||+|||+|||||+|+
T Consensus 240 ftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~ 319 (416)
T KOG1367|consen 240 FTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESI 319 (416)
T ss_pred ehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEEEeeeeeeeeccccCccccceeccccCCCCCccccccChHHH
Confidence 99999988899999999999999999999999999999999999999999999988888876667999999999999999
Q ss_pred HHHHHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchh
Q psy8371 310 ELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLE 389 (528)
Q Consensus 310 ~~~~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le 389 (528)
+.|++.+.+|||||||||+||||++.|+.||++++.++++++..+++||+|||||+.|.++||..+.+|||||||||+++
T Consensus 320 k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v~~t~~G~~tiiGGGDTata~~k~g~~dk~ShVSTGGGasLe 399 (416)
T KOG1367|consen 320 KMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALVKLTGKGVTTIIGGGDTATACKKFGTEDKVSHVSTGGGASLE 399 (416)
T ss_pred HHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHHHHhcCCcEEEEcCCcHHHHHHHhCcccceeeeecCCceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCC
Q psy8371 390 LLEGKIKEKGFG 401 (528)
Q Consensus 390 ~L~~k~Lp~g~G 401 (528)
.|+||+|||...
T Consensus 400 LLeGK~LPGv~a 411 (416)
T KOG1367|consen 400 LLEGKVLPGVDA 411 (416)
T ss_pred hhcCCcCcchhh
Confidence 999999999764
No 4
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=3.2e-129 Score=1017.64 Aligned_cols=383 Identities=61% Similarity=0.995 Sum_probs=364.5
Q ss_pred ccccccCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhc
Q psy8371 8 VDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLL 77 (528)
Q Consensus 8 i~d~~~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l 77 (528)
|+|+|++|||||||||||||+++ +++|||+||+++||| |||+||||||+|+.++++||+|||++|+++|
T Consensus 1 i~d~~~~gK~VlvRvD~NvPi~~g~I~dd~RI~a~lpTI~~l~~~gak-vvl~SHlGRP~g~~~~~~SL~~va~~L~~lL 79 (397)
T cd00318 1 IDDLDLKGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEQGAK-VVLLSHLGRPKGEPNEKYSLAPVAKALSELL 79 (397)
T ss_pred CCccccCCCEEEEEeccCCCCcCCeECChHHHHHHHHHHHHHHHCCCe-EEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999964 999999999999998 9999999999887778999999999999999
Q ss_pred CCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEecccccc
Q psy8371 78 KKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTA 157 (528)
Q Consensus 78 ~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDAF~~a 157 (528)
+++|+|++||+|+.++++|++|++||||||||||||++|+.+. +++.++++.|+++||+|||+|||||||+|
T Consensus 80 ~~~V~f~~d~~g~~~~~~i~~l~~GeIlLLEN~RF~~~E~~~~--------~~e~~~~~~~a~~LA~l~DiyVNDAFg~a 151 (397)
T cd00318 80 GQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEEGKR--------DDDKEADEEFAKKLASLGDVYVNDAFGTA 151 (397)
T ss_pred CCCcEECCCCCCHHHHHHHhcCCCCcEEEEeccCccccccccC--------CcchhhHHHHHHHHHHhCCEEEEcchhhh
Confidence 9999999999999999999999999999999999999998642 22455578999999999999999999999
Q ss_pred cccCccccccc-ccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHHHHHHHH
Q psy8371 158 HRAHSSMLGEG-FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKEL 236 (528)
Q Consensus 158 HR~haS~~g~~-~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~tFl~a~ 236 (528)
||+|||+|||+ +.|+|||+||+|||++|++++++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|
T Consensus 152 HR~haS~vgi~~~~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A- 230 (397)
T cd00318 152 HRAHASMVGIALLLPSAAGFLMEKELKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKA- 230 (397)
T ss_pred hhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHH-
Confidence 99999999998 4589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHHHHHH
Q psy8371 237 KGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELFKEPI 316 (528)
Q Consensus 237 ~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i 316 (528)
+|++||+|++|++.++.|++|++++++++++|+||+|++|+++|+.++++.+++. ++||++||++||||+|++.|+++|
T Consensus 231 ~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~-~~ip~~~~~lDIGp~Ti~~~~~~i 309 (397)
T cd00318 231 QGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTD-DGIPDGWMGLDIGPKTIELFAEVI 309 (397)
T ss_pred cCCCcCccccChhhHHHHHHHHHHhHhcCCEEECCceEEEeeccCCCCceEEEec-ccCCCCCEEEeeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987777777665 589999999999999999999999
Q ss_pred ccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhhhhhhcc
Q psy8371 317 ARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKIK 396 (528)
Q Consensus 317 ~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~L~~k~L 396 (528)
++|+||||||||||||+++|+.||++|+++++++++++++||+|||||++|++++|+.++|+|+||||||+|+||+|+.|
T Consensus 310 ~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~~~~~a~sivGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~LeGk~L 389 (397)
T cd00318 310 RKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTAAAAEKFGLADKISHVSTGGGASLELLEGKEL 389 (397)
T ss_pred hhCCEEEEECCCcCccCCcccHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCceEEcCchHHHHHHHcCCCC
Confidence 99999999999999999999999999999999977667899999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8371 397 EKGFG 401 (528)
Q Consensus 397 p~g~G 401 (528)
|+.+.
T Consensus 390 Pgi~a 394 (397)
T cd00318 390 PGVAA 394 (397)
T ss_pred chHHh
Confidence 99753
No 5
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=5.2e-129 Score=1027.12 Aligned_cols=381 Identities=49% Similarity=0.854 Sum_probs=364.8
Q ss_pred CCCccccccc---ccCCCEEEEEecCCCCCCC-----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChH
Q psy8371 2 ALNKLSVDLL---NLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLK 67 (528)
Q Consensus 2 ~~~~~ti~d~---~~~gk~VlvRvD~NvP~~~-----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~ 67 (528)
+|+++||+|+ |++|||||||||||||+++ +++|||+||+++||| |||+||||||+| .++++||+
T Consensus 76 ~m~~~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gak-vVl~SHlGRPkg-~~~~~SL~ 153 (481)
T PLN03034 76 SMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAK-VILSSHLGRPKG-VTPKFSLA 153 (481)
T ss_pred hcccCcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCe-EEEEEecCCCCC-CCcccCHH
Confidence 4678899999 9999999999999999952 999999999999998 999999999988 77899999
Q ss_pred HHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCC
Q psy8371 68 PVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGD 147 (528)
Q Consensus 68 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~D 147 (528)
|||++|+++|+++|.|++||+|++++++|++|++|||+||||||||+||+.+ ++.|+++||+|||
T Consensus 154 pva~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~n---------------d~~fa~~LA~l~D 218 (481)
T PLN03034 154 PLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN---------------EPEFAKKLASLAD 218 (481)
T ss_pred HHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccC---------------cHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999752 2489999999999
Q ss_pred EEEecccccccccCccccccc-c-cccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEc
Q psy8371 148 IYVNDAFGTAHRAHSSMLGEG-F-EQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIG 225 (528)
Q Consensus 148 iyVnDAF~~aHR~haS~~g~~-~-~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiig 225 (528)
+|||||||+|||+|||++||+ + +|+|||+||||||++|++++++|+||+++|+||+||||||++|+||+++||+||+|
T Consensus 219 iyVNDAFgtaHR~haS~vGi~~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliG 298 (481)
T PLN03034 219 LYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLG 298 (481)
T ss_pred EEEecchhhhHhcccchhhhhhhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEEC
Confidence 999999999999999999998 3 47999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccC
Q psy8371 226 GGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIG 305 (528)
Q Consensus 226 G~ma~tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIG 305 (528)
|+||||||+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.++++.+++. ++||+|||++|||
T Consensus 299 G~ma~tFl~A-~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~-~~Ip~~~~~lDIG 376 (481)
T PLN03034 299 GGMIFTFYKA-QGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPA-SAIPDGWMGLDIG 376 (481)
T ss_pred cHHHHHHHHH-cCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeeh-hcCCCCCEEEecC
Confidence 9999999999 9999999999999999999999999999999999999999999987777776664 5899999999999
Q ss_pred hhHHHHHHHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCC
Q psy8371 306 PKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGG 385 (528)
Q Consensus 306 p~Ti~~~~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGG 385 (528)
|+|++.|+++|++|+||||||||||||+++|+.||++|+++++++++++++||+|||||++|++++|+.++++|+|||||
T Consensus 377 p~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~shiSTGGG 456 (481)
T PLN03034 377 PDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGG 456 (481)
T ss_pred HHHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccceeEEeCcHH
Confidence 99999999999999999999999999999999999999999999877789999999999999999999999999999999
Q ss_pred cchhhhhhhccccCCC
Q psy8371 386 ASLELLEGKIKEKGFG 401 (528)
Q Consensus 386 A~le~L~~k~Lp~g~G 401 (528)
|+|++|+|++||+.+.
T Consensus 457 A~Le~LeGk~LPgv~a 472 (481)
T PLN03034 457 ASLELLEGKELPGVVA 472 (481)
T ss_pred HHHHHHcCCCCcHHHH
Confidence 9999999999999875
No 6
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=9.3e-129 Score=1014.09 Aligned_cols=379 Identities=50% Similarity=0.863 Sum_probs=362.9
Q ss_pred CcccccccccCCCEEEEEecCCCCCCC-----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHH
Q psy8371 4 NKLSVDLLNLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEE 72 (528)
Q Consensus 4 ~~~ti~d~~~~gk~VlvRvD~NvP~~~-----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~ 72 (528)
.++||+|+|++|||||||||||||+++ +++|||+||+++||| |||+||||||+| .++++||+|||++
T Consensus 6 ~~~ti~d~d~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gak-vVl~SHlGRP~g-~~~~~SL~~va~~ 83 (401)
T PLN02282 6 SVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGAR-VILCSHLGRPKG-VTPKYSLKPLVPR 83 (401)
T ss_pred ccCChhHhhccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCe-EEEEecCCCCCC-CCcccCHHHHHHH
Confidence 478999999999999999999999952 999999999999998 999999999988 6789999999999
Q ss_pred HHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEec
Q psy8371 73 LKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVND 152 (528)
Q Consensus 73 L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnD 152 (528)
|+++|+++|.|++||+|++++++|++|++|||+||||||||+||+.+ ++.|+++||+|||+||||
T Consensus 84 Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~~---------------~~~~a~~LA~l~DvyVND 148 (401)
T PLN02282 84 LSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEEKN---------------DPEFAKKLASLADVYVND 148 (401)
T ss_pred HHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccccCcccccC---------------HHHHHHHHHHhCcEeeec
Confidence 99999999999999999999999999999999999999999999752 247999999999999999
Q ss_pred ccccccccCccccccc-c-cccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHH
Q psy8371 153 AFGTAHRAHSSMLGEG-F-EQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSY 230 (528)
Q Consensus 153 AF~~aHR~haS~~g~~-~-~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~ 230 (528)
|||+|||+|||++||+ + +|+|||+||||||++|++++++|+||++||+|||||||||++|+||+++||+||+||+|||
T Consensus 149 AFg~aHR~haS~~gi~~~l~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~ 228 (401)
T PLN02282 149 AFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIF 228 (401)
T ss_pred hhhhhhhcccchhhhhhhcCccccchHHHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHH
Confidence 9999999999999998 4 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHH
Q psy8371 231 TFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRE 310 (528)
Q Consensus 231 tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~ 310 (528)
|||+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.+++..+++. ++||+|||++||||+|++
T Consensus 229 tFl~A-~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~~~~~~~-~~ip~~~~~lDIGp~Ti~ 306 (401)
T PLN02282 229 TFYKA-QGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPA-SAIPDGWMGLDIGPDSIK 306 (401)
T ss_pred HHHHH-cCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEeeh-hcCCCCCeeeccCHHHHH
Confidence 99999 9999999999999999999999999999999999999999999988877777664 589999999999999999
Q ss_pred HHHHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhh
Q psy8371 311 LFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLEL 390 (528)
Q Consensus 311 ~~~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~ 390 (528)
.|+++|++|+||||||||||||+++|+.||++|+++++++++++++||+|||||++|++++|+.++++|+||||||+|++
T Consensus 307 ~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~shvSTGGGA~Le~ 386 (401)
T PLN02282 307 TFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLEL 386 (401)
T ss_pred HHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCceEEeCchHHHHHH
Confidence 99999999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred hhhhccccCCC
Q psy8371 391 LEGKIKEKGFG 401 (528)
Q Consensus 391 L~~k~Lp~g~G 401 (528)
|+|+.||+.+.
T Consensus 387 LeGk~LPgi~a 397 (401)
T PLN02282 387 LEGKPLPGVLA 397 (401)
T ss_pred HcCCCcchHHH
Confidence 99999999753
No 7
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=4e-127 Score=999.61 Aligned_cols=374 Identities=56% Similarity=0.911 Sum_probs=356.8
Q ss_pred cccccccccCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHH
Q psy8371 5 KLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELK 74 (528)
Q Consensus 5 ~~ti~d~~~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~ 74 (528)
++||+|+|++|||||||||||||+++ +++|||+||+++||| |||+||||||+| .++++||+|||++|+
T Consensus 1 ~~tl~d~d~~gK~VlvRvD~NvPi~~g~I~dd~RI~~~lpTI~~l~~~gak-vvl~sH~gRP~g-~~~~~SL~~va~~L~ 78 (389)
T PRK00073 1 KKTLDDLDLKGKRVLVRVDFNVPVKDGKITDDTRIRAALPTIKYLLEKGAK-VILLSHLGRPKG-EDPEFSLAPVAKRLS 78 (389)
T ss_pred CCchHHcccCCCEEEEEeccCCCCcCCcCCChHhHHHHHHHHHHHHHCCCe-EEEEEecCCCCC-CCCCcCHHHHHHHHH
Confidence 46999999999999999999999963 999999999999998 999999999988 778899999999999
Q ss_pred HhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEeccc
Q psy8371 75 TLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAF 154 (528)
Q Consensus 75 ~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDAF 154 (528)
++|+++|+|++||+|++++++|++|++|+|+||||||||++|+.+ ++.|+++||+|||+||||||
T Consensus 79 ~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~Rf~~~E~~~---------------d~~~a~~LA~l~DiyVNDAF 143 (389)
T PRK00073 79 ELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEKN---------------DPELAKKLASLGDVFVNDAF 143 (389)
T ss_pred HHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccC---------------HHHHHHHHHHhCCEEEECch
Confidence 999999999999999999999999999999999999999999742 25899999999999999999
Q ss_pred ccccccCccccccc-ccc-cchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHHHH
Q psy8371 155 GTAHRAHSSMLGEG-FEQ-RASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTF 232 (528)
Q Consensus 155 ~~aHR~haS~~g~~-~~~-~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~tF 232 (528)
|+|||+|||++||+ +.| +|||+||||||++|++++++|+||+++|+|||||||||.+|+||+++||+|++||+|||||
T Consensus 144 g~aHR~haS~vgi~~~lp~~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tF 223 (389)
T PRK00073 144 GTAHRAHASTVGIAKFLKPAAAGFLMEKELEALGKALENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTF 223 (389)
T ss_pred hhhhhcccchhchhhhCchhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHH
Confidence 99999999999998 334 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHH
Q psy8371 233 LKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELF 312 (528)
Q Consensus 233 l~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~ 312 (528)
|+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+ ++++.+++. ++||+|||++||||+|++.|
T Consensus 224 l~A-~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~-~~~~~~~~~-~~ip~~~~~lDIGp~Ti~~~ 300 (389)
T PRK00073 224 LKA-QGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEFS-DAEATVVSV-DEIPDDWMILDIGPKTIELF 300 (389)
T ss_pred HHH-cCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeEEeeccC-CCceEEeEc-ccCCCCCeeeecCHHHHHHH
Confidence 999 999999999999999999999999999999999999999999987 666666664 58999999999999999999
Q ss_pred HHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhhhh
Q psy8371 313 KEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLE 392 (528)
Q Consensus 313 ~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~L~ 392 (528)
+++|++|+||||||||||||+++|+.||+++++++++. .++||+|||||++|++++|+.++++|+||||||+|++|+
T Consensus 301 ~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~---~a~sivGGGdt~aa~~~~g~~~~~shiSTGGGA~Le~Le 377 (389)
T PRK00073 301 AEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAES---TAFSIIGGGDTAAAVEKLGLADKFSHISTGGGASLEFLE 377 (389)
T ss_pred HHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhc---CCeEEEcCCHHHHHHHHcCCCCCccEEcCCcHHHHHHHc
Confidence 99999999999999999999999999999999999874 379999999999999999999999999999999999999
Q ss_pred hhccccCCC
Q psy8371 393 GKIKEKGFG 401 (528)
Q Consensus 393 ~k~Lp~g~G 401 (528)
|+.||+.+.
T Consensus 378 Gk~LPgv~a 386 (389)
T PRK00073 378 GKELPGVAA 386 (389)
T ss_pred CCCcchHHH
Confidence 999999753
No 8
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=8e-125 Score=983.89 Aligned_cols=371 Identities=58% Similarity=0.951 Sum_probs=331.7
Q ss_pred cccccccCCCEEEEEecCCCCCCC----------CcHHHHHHHHHCCCCeEEEEccCCCCCC-CCCCCCChHHHHHHHHH
Q psy8371 7 SVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPDG-SKNLKYSLKPVAEELKT 75 (528)
Q Consensus 7 ti~d~~~~gk~VlvRvD~NvP~~~----------~~lpTI~~l~~~gak~vil~sHlGRP~g-~~~~~~Sl~~~a~~L~~ 75 (528)
||+|+|++|||||||||||||+++ +++|||+||+++||| |||+||||||+| ++++++||+|||++|++
T Consensus 1 Ti~d~d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~l~~~gak-vVl~sH~GRPk~~~~~~~~SL~~va~~L~~ 79 (384)
T PF00162_consen 1 TIDDLDLKGKRVLVRVDFNVPIKNGKITDDTRIRAALPTIKYLLEKGAK-VVLMSHLGRPKGKGYDDFFSLEPVAERLSK 79 (384)
T ss_dssp BGGGS--TTEEEEEEE-----EETTEES-THHHHHHHHHHHHHHHTTEE-EEEE---SSTTTSSSTGGG-SHHHHHHHHH
T ss_pred CccccCcCCCEEEEEeCCCCCcCCCcCCCcchHHHHHHHHHHHHhcCCe-EEEEeccCCcccCCCCcccChHHHHHHHHH
Confidence 799999999999999999999953 999999999999998 999999999987 78899999999999999
Q ss_pred hcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEecccc
Q psy8371 76 LLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFG 155 (528)
Q Consensus 76 ~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDAF~ 155 (528)
+|+++|.|++||+|+.++++|++|++|+||||||||||+||+.+. .++++.|+++||+|||+|||||||
T Consensus 80 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLENlRf~~eE~~~~-----------~~~~~~f~~~LA~l~DvyVNDAFg 148 (384)
T PF00162_consen 80 LLGKPVKFVDDCIGEEAEEAIESLKPGEILLLENLRFYPEEEGKK-----------EKNDTEFARKLASLADVYVNDAFG 148 (384)
T ss_dssp HHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESSGGGSTTTTSEE-----------HHTHHHHHHHHHTT-SEEEEESGG
T ss_pred HhCCCeeeccccCCHHHHHHHhccCCCCEEEEeeecccccccccc-----------ccccHHHHHHHHHhCCEEEEcCcc
Confidence 999999999999999999999999999999999999999998531 345689999999999999999999
Q ss_pred cccccCccccccc-c-cccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHHHHH
Q psy8371 156 TAHRAHSSMLGEG-F-EQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFL 233 (528)
Q Consensus 156 ~aHR~haS~~g~~-~-~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~tFl 233 (528)
+|||+|||++||+ + +|+|||+||+|||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||
T Consensus 149 ~aHR~haS~vgi~~~l~ps~aG~lmekEl~~L~~~~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl 228 (384)
T PF00162_consen 149 TAHRAHASTVGIPKFLKPSAAGFLMEKELEALSKVLENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFL 228 (384)
T ss_dssp GTTS--TTTTTGGGTSSEEEE-HHHHHHHHHHHHHHHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHH
T ss_pred chhcCCCCcccchhccchhhHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHH
Confidence 9999999999998 4 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHHH
Q psy8371 234 KELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELFK 313 (528)
Q Consensus 234 ~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~ 313 (528)
+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.+++..+.+. ++||++||++||||+|++.|+
T Consensus 229 ~A-~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~lPvD~~v~~~~~~~~~~~~~~~-~~ip~~~~~lDIGp~Ti~~~~ 306 (384)
T PF00162_consen 229 KA-QGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIVLPVDFVVADEFSDGARVEVVPA-DEIPDGWMILDIGPKTIELFS 306 (384)
T ss_dssp HH-TTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE--SEEEEESSSSTTSCEEEEET-TGBCTTSEEEEE-HHHHHHHH
T ss_pred HH-cCCcccccchhhhhHHHHHHHHHHHHhcCceEEEEEEEeehhcccCCCCcEeccc-cccCCCCeeeccCHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999988877766654 589999999999999999999
Q ss_pred HHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhhhhh
Q psy8371 314 EPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEG 393 (528)
Q Consensus 314 ~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~L~~ 393 (528)
++|++|+|||||||||+||+++|++||+++++++++. +++||+|||||++|++++|+.++|+|+||||||+|++|+|
T Consensus 307 ~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~---~a~sivGGGdt~~a~~~~g~~~~~shvSTGGGA~L~~LeG 383 (384)
T PF00162_consen 307 EIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS---GAFSIVGGGDTAAAIKKFGLADKFSHVSTGGGAFLEFLEG 383 (384)
T ss_dssp HHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH---TSEEEEESHHHHHHHHHTTGGGGSSEEESSSHHHHHHHTT
T ss_pred HHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc---CCeEEEcccHHHHHHHhcCcccceeEEecCcHHHHHHhcC
Confidence 9999999999999999999999999999999999985 6899999999999999999999999999999999999997
Q ss_pred h
Q psy8371 394 K 394 (528)
Q Consensus 394 k 394 (528)
|
T Consensus 384 k 384 (384)
T PF00162_consen 384 K 384 (384)
T ss_dssp S
T ss_pred C
Confidence 5
No 9
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=3e-123 Score=1022.20 Aligned_cols=394 Identities=51% Similarity=0.849 Sum_probs=368.9
Q ss_pred CCcccccccccCCCEEEEEecCCCCCC-C----------CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHH
Q psy8371 3 LNKLSVDLLNLAGKRVLMRVDFNVPMK-E----------AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAE 71 (528)
Q Consensus 3 ~~~~ti~d~~~~gk~VlvRvD~NvP~~-~----------~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~ 71 (528)
|+++||+|+|++|||||||||||||++ + +++|||+||+++||| |||+||||||+|+.++++||+|||+
T Consensus 1 m~~~ti~d~d~~gK~VlvRvD~NvP~~~~g~i~dd~RI~~~lpTI~~l~~~gak-vvl~SH~gRP~~~~~~~~SL~~va~ 79 (645)
T PRK13962 1 MNKKTIRDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAK-VILVSHLGRPKGEFDPKFSMAPVAK 79 (645)
T ss_pred CCCCchhhhccCCCEEEEEecCCCCcCCCCcCCCcHhHHHHHHHHHHHHhCCCe-EEEEEecCCCCCCcCccCCHHHHHH
Confidence 458899999999999999999999996 3 999999999999998 9999999999987788999999999
Q ss_pred HHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEe
Q psy8371 72 ELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVN 151 (528)
Q Consensus 72 ~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVn 151 (528)
+|+++|+++|.|++||+|++++++|++|++||||||||||||++|+.+ ++.|+++||+|||+|||
T Consensus 80 ~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~Rf~~~E~~~---------------d~~~~~~LA~l~DvyVN 144 (645)
T PRK13962 80 RLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHKEETKN---------------DPEFAKELASLADIYVN 144 (645)
T ss_pred HHHHHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccC---------------HHHHHHHHHHhCCEEEe
Confidence 999999999999999999999999999999999999999999998752 24899999999999999
Q ss_pred cccccccccCccccccc-ccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEchHHHH
Q psy8371 152 DAFGTAHRAHSSMLGEG-FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSY 230 (528)
Q Consensus 152 DAF~~aHR~haS~~g~~-~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiigG~ma~ 230 (528)
||||+|||+|||++||+ +.|+|||+||||||++|++++++|+||+++|+|||||||||++|+||+++||+||+||+|||
T Consensus 145 DAFg~aHR~haS~~gi~~~lp~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~ 224 (645)
T PRK13962 145 DAFGTAHRAHASTAGVAEYLPAVAGFLMEKEIEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAY 224 (645)
T ss_pred chhhhhhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHH
Confidence 99999999999999998 44699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHH
Q psy8371 231 TFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRE 310 (528)
Q Consensus 231 tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~ 310 (528)
|||+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.++++..++. ++||+|||++||||+|++
T Consensus 225 tFl~a-~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~~~~~~-~~ip~~~~~lDIGp~Ti~ 302 (645)
T PRK13962 225 TFLKA-KGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPS-DAIPEDWMGLDIGPETIE 302 (645)
T ss_pred HHHHH-cCCCCChhhcChhhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCceEEEec-ccCCCCCEEEeeCHHHHH
Confidence 99999 9999999999999999999999999999999999999999999988887776664 589999999999999999
Q ss_pred HHHHHHccCCeEEEeCCcccccccchhHHHHHHHHHHHhhhcCCceEEEecCchHHHhhhcCCcCCcceeecCCCcchhh
Q psy8371 311 LFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLEL 390 (528)
Q Consensus 311 ~~~~~i~~a~ti~wnGP~GvfE~~~F~~GT~~i~~aia~~~~~~~~sIiGGGdt~aa~~~~g~~~~~s~vSTgGGA~le~ 390 (528)
.|+++|++|+||||||||||||+++|+.||+++++++++ ++++||+|||||++|++++|+.++++|+||||||+|++
T Consensus 303 ~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~---~~~~svvGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~ 379 (645)
T PRK13962 303 LFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAE---SGAITIIGGGDSAAAVEKLGFADKMSHISTGGGASLEF 379 (645)
T ss_pred HHHHHHhhCCEEEEECCCccccCCCchHHHHHHHHHHHh---cCCeEEECchHHHHHHHHcCCccCceEEcCChHHHHHH
Confidence 999999999999999999999999999999999999986 36899999999999999999999999999999999999
Q ss_pred hhhhccccCCCCC-CcC-CeEEEEEEEEE
Q psy8371 391 LEGKIKEKGFGEN-PVL-GAHVQVHYMYY 417 (528)
Q Consensus 391 L~~k~Lp~g~G~~-p~~-Gd~V~v~Y~g~ 417 (528)
|+||.||+.+.-. -.. --.|..+|+.+
T Consensus 380 LeGk~LPgv~aL~~s~Mrk~~i~gNWKMn 408 (645)
T PRK13962 380 LEGKVLPGIACLLDKNPRKPIIAGNWKMN 408 (645)
T ss_pred HcCCccHHHHHHhhcCCCCcEEEEECCcC
Confidence 9999999998632 111 12355566554
No 10
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.3e-25 Score=210.69 Aligned_cols=111 Identities=32% Similarity=0.539 Sum_probs=103.3
Q ss_pred ceeecCCCcchhhhhhhccccCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCc
Q psy8371 378 SHVSTGGGASLELLEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 457 (528)
Q Consensus 378 s~vSTgGGA~le~L~~k~Lp~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~ 457 (528)
...+|.+| |+|+++..|+|..|..|++|+|||+|++. ||++|||||.++ +|+.|.|| ++|+||.++|.+|+
T Consensus 95 ~v~~~~sg-----l~y~~~~~G~G~~~~~~~~V~vhY~G~l~-~G~vFDsS~~rg-~p~~f~l~--~vI~Gw~egl~~M~ 165 (205)
T COG0545 95 GVKTLPSG-----LQYKVLKAGDGAAPKKGDTVTVHYTGTLI-DGTVFDSSYDRG-QPAEFPLG--GVIPGWDEGLQGMK 165 (205)
T ss_pred CceECCCC-----cEEEEEeccCCCCCCCCCEEEEEEEEecC-CCCccccccccC-CCceeecC--CeeehHHHHHhhCC
Confidence 34455555 99999999999999999999999999997 999999999999 89999995 99999999999999
Q ss_pred cccccCCCCEEEEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q psy8371 458 KGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503 (528)
Q Consensus 458 ~G~~~~~Ge~~~~~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~ 503 (528)
+ |++|+++|||++|||.+|.++.||||++|+|+|+|+++.
T Consensus 166 v------G~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 166 V------GGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred C------CceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9 899999999999999999888899999999999999874
No 11
>KOG0544|consensus
Probab=99.92 E-value=7.1e-25 Score=184.74 Aligned_cols=105 Identities=29% Similarity=0.492 Sum_probs=97.5
Q ss_pred hhhhccccCCCC-CCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEE
Q psy8371 391 LEGKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSD 469 (528)
Q Consensus 391 L~~k~Lp~g~G~-~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~ 469 (528)
++..++..|+|. .|+.||+|++||++.+. ||+.||||.+++ .|+.|.+|.+++|+||++++..|.+ ||+++
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~-dG~kfDSs~dr~-kPfkf~IGkgeVIkGwdegv~qmsv------Gekak 74 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQ-DGKKFDSSRDRG-KPFKFKIGKGEVIKGWDEGVAQMSV------GEKAK 74 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEEEEeEec-CCcEeecccccC-CCeeEEecCcceeechhhcchhccc------cccce
Confidence 344566778885 49999999999999997 999999999998 8999999999999999999999999 89999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q psy8371 470 FFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503 (528)
Q Consensus 470 ~~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~ 503 (528)
+.|+|++|||..|.+..||||++|+|||||+++.
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 9999999999999999999999999999999863
No 12
>KOG0549|consensus
Probab=99.90 E-value=1.3e-23 Score=197.45 Aligned_cols=104 Identities=30% Similarity=0.541 Sum_probs=97.5
Q ss_pred ccCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCC
Q psy8371 397 EKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYEL 476 (528)
Q Consensus 397 p~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~l 476 (528)
|.....+.+.||.+.+||++.+. ||+.|||||+++ +|++|+||.+++|+||+++|++|++ ||+|+++|||++
T Consensus 78 p~~C~~kak~GD~l~~HY~g~le-DGt~fdSS~~rg-~P~~f~LG~gqVIkG~Dqgl~gMCv------GEkRkl~IPp~L 149 (188)
T KOG0549|consen 78 PEECPEKAKKGDTLHVHYTGSLE-DGTKFDSSYSRG-APFTFTLGTGQVIKGWDQGLLGMCV------GEKRKLIIPPHL 149 (188)
T ss_pred CccccccccCCCEEEEEEEEEec-CCCEEeeeccCC-CCEEEEeCCCceeccHhHHhhhhCc------ccceEEecCccc
Confidence 45566779999999999999887 999999999998 8999999999999999999999999 899999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEeeeecCccc
Q psy8371 477 CFGALGCPPRIPAKADLLFEVHLINFSIDPQV 508 (528)
Q Consensus 477 ayG~~g~~~~IPp~a~LvfeveL~~~~~~~~~ 508 (528)
+||++|.++.||++++|+|+|||+++.+.+..
T Consensus 150 gYG~~G~~~~IP~~A~LiFdiELv~i~~~~~~ 181 (188)
T KOG0549|consen 150 GYGERGAPPKIPGDAVLIFDIELVKIERGPPE 181 (188)
T ss_pred cCccCCCCCCCCCCeeEEEEEEEEEeecCCCc
Confidence 99999999899999999999999999987653
No 13
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=1.5e-20 Score=183.46 Aligned_cols=103 Identities=29% Similarity=0.444 Sum_probs=98.3
Q ss_pred hhhhccccCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEE
Q psy8371 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDF 470 (528)
Q Consensus 391 L~~k~Lp~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~ 470 (528)
|.|+++..|+|..|..||.|.|||++++. ||++||+||.++ .|+.|.+| .++|||+++|.+|++ |+++.+
T Consensus 104 l~y~vi~~G~G~~p~~~d~V~v~Y~g~l~-dG~vfdss~~~g-~P~~f~l~--~vipG~~eaL~~M~~------G~k~~~ 173 (206)
T PRK11570 104 LQFRVLTQGEGAIPARTDRVRVHYTGKLI-DGTVFDSSVARG-EPAEFPVN--GVIPGWIEALTLMPV------GSKWEL 173 (206)
T ss_pred cEEEEEeCCCCCCCCCCCEEEEEEEEEEC-CCCEEEeccCCC-CCeEEEee--chhhHHHHHHcCCCC------CCEEEE
Confidence 99999999999999999999999999997 999999999987 79999994 799999999999999 899999
Q ss_pred EEcCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q psy8371 471 FASYELCFGALGCPPRIPAKADLLFEVHLINFS 503 (528)
Q Consensus 471 ~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~ 503 (528)
+|||++|||+.|+++.||||++|+|+|||++|.
T Consensus 174 ~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 174 TIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 999999999999988899999999999999873
No 14
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.82 E-value=4.6e-20 Score=176.09 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=101.9
Q ss_pred cceeecCCCcchhhhhhhccc--cCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHh
Q psy8371 377 VSHVSTGGGASLELLEGKIKE--KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAIL 454 (528)
Q Consensus 377 ~s~vSTgGGA~le~L~~k~Lp--~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~ 454 (528)
.++..|..| +.|.++. .|+|..|+.||.|++||++++. ||++|++++..+ |+.|.+|.+++++||+++|.
T Consensus 62 ~~~~~t~sG-----l~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~-dG~v~~ss~~~~--P~~f~vg~~~vi~Gl~e~L~ 133 (177)
T TIGR03516 62 VKYETSQNG-----FWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL-DGDVIYSEEELG--PQTYKVDQQDLFSGLRDGLK 133 (177)
T ss_pred CCceECCCc-----cEEEEEEecCCCCCcCCCCCEEEEEEEEEeC-CCCEEEeCCCCC--CEEEEeCCcchhHHHHHHHc
Confidence 556666655 7776664 4777889999999999999997 999999998754 99999999999999999999
Q ss_pred cCccccccCCCCEEEEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeeec
Q psy8371 455 SMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSI 504 (528)
Q Consensus 455 ~M~~G~~~~~Ge~~~~~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~~ 504 (528)
+|++ |++++|++||++|||.+|.++.||||++|+|+|+|++|.+
T Consensus 134 ~Mk~------Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 134 LMKE------GETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred CCCC------CCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 9999 8999999999999999998888999999999999999863
No 15
>KOG0552|consensus
Probab=99.82 E-value=3.9e-20 Score=180.92 Aligned_cols=104 Identities=29% Similarity=0.473 Sum_probs=99.0
Q ss_pred hhhhccccCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceE-EecCCCCchHHHHHHHhcCccccccCCCCEEE
Q psy8371 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER-FQLGSSGLIPAFEYAILSMQKGSLNLSGEKSD 469 (528)
Q Consensus 391 L~~k~Lp~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~-f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~ 469 (528)
+.|+.+..|.|+.|..|+.|.|||.|++..+|++||+++..+ |+. |++|.+++|+||+.++.+|++ |.+|+
T Consensus 122 l~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~k--p~~~f~lg~g~VIkG~d~gv~GMkv------GGkRr 193 (226)
T KOG0552|consen 122 LRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGK--PFKLFRLGSGEVIKGWDVGVEGMKV------GGKRR 193 (226)
T ss_pred cEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCC--CccccccCCCCCCchHHHhhhhhcc------CCeeE
Confidence 899999999999999999999999999988999999999875 899 999999999999999999999 89999
Q ss_pred EEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeee
Q psy8371 470 FFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503 (528)
Q Consensus 470 ~~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~ 503 (528)
++|||++|||.+|.+ .||||+||+|+|||+.+.
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 999999999999987 699999999999999863
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.76 E-value=5e-18 Score=144.58 Aligned_cols=91 Identities=37% Similarity=0.706 Sum_probs=85.4
Q ss_pred CCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCC
Q psy8371 402 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGAL 481 (528)
Q Consensus 402 ~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~ 481 (528)
++|+.||.|++||++++. +|+.|++++..+ .|+.|.+|.+.+++||+++|.+|++ |+++++.+|++++||..
T Consensus 3 ~~~~~gd~V~i~y~~~~~-~g~~~~~~~~~~-~~~~~~~g~~~~i~g~e~al~~m~~------Ge~~~~~vp~~~ayg~~ 74 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLE-DGKVFDSSYQEG-EPFEFRLGSGQVIPGLEEALIGMKV------GEKREFYVPPELAYGEK 74 (94)
T ss_dssp SSBSTTSEEEEEEEEEET-TSEEEEETTTTT-SEEEEETTSSSSSHHHHHHHTTSBT------TEEEEEEEEGGGTTTTT
T ss_pred ccCCCCCEEEEEEEEEEC-CCcEEEEeeecC-cceeeeeccCccccchhhhcccccC------CCEeeeEeCChhhcCcc
Confidence 359999999999999998 999999998876 7999999999999999999999999 89999999999999999
Q ss_pred CC-CCCCCCCCcEEEEEEEe
Q psy8371 482 GC-PPRIPAKADLLFEVHLI 500 (528)
Q Consensus 482 g~-~~~IPp~a~LvfeveL~ 500 (528)
+. ++.|||+++|+|+|+|+
T Consensus 75 ~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 75 GLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp TBCTTTBTTTSEEEEEEEEE
T ss_pred ccCCCCcCCCCeEEEEEEEC
Confidence 87 55699999999999986
No 17
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=4.7e-18 Score=171.90 Aligned_cols=106 Identities=32% Similarity=0.546 Sum_probs=99.1
Q ss_pred hhhhccccCCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEE
Q psy8371 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDF 470 (528)
Q Consensus 391 L~~k~Lp~g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~ 470 (528)
|.|+++..|+|..|..||.|.|||++++. ||++|++++.++ .|+.|.+ ++++|||+++|.+|++ |+++.+
T Consensus 148 l~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g-~p~~f~l--~~vipG~~EaL~~Mk~------Gek~~l 217 (269)
T PRK10902 148 LLYKVEKEGTGEAPKDSDTVVVNYKGTLI-DGKEFDNSYTRG-EPLSFRL--DGVIPGWTEGLKNIKK------GGKIKL 217 (269)
T ss_pred cEEEEEeCCCCCCCCCCCEEEEEEEEEeC-CCCEeeccccCC-CceEEec--CCcchHHHHHHhcCCC------CcEEEE
Confidence 99999999999999999999999999986 999999999987 7999988 5799999999999999 899999
Q ss_pred EEcCCCccCCCCCCCCCCCCCcEEEEEEEeeeecCcc
Q psy8371 471 FASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 507 (528)
Q Consensus 471 ~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~~~~~ 507 (528)
+||++++||..|.+ .||||++|+|+|+|+++...+.
T Consensus 218 ~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 218 VIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred EECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCcc
Confidence 99999999999875 5999999999999999987553
No 18
>KOG0543|consensus
Probab=99.46 E-value=5e-13 Score=139.83 Aligned_cols=112 Identities=30% Similarity=0.409 Sum_probs=96.3
Q ss_pred hhhhccccCCC--CCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCC-CCchHHHHHHHhcCccccccCCCCE
Q psy8371 391 LEGKIKEKGFG--ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGS-SGLIPAFEYAILSMQKGSLNLSGEK 467 (528)
Q Consensus 391 L~~k~Lp~g~G--~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~-~~li~g~eeaL~~M~~G~~~~~Ge~ 467 (528)
+.-+++..|.| ..|..|..|.|||.|++. |+ +|+++.. .|.|.+|+ ..++.||+.+|..|++ ||.
T Consensus 86 iiKriir~G~gd~~~P~~g~~V~v~~~G~~~-~~-~f~~~~~----~fe~~~Ge~~~vi~Gle~al~~M~~------GE~ 153 (397)
T KOG0543|consen 86 IIKRIIREGEGDYSRPNKGAVVKVHLEGELE-DG-VFDQREL----RFEFGEGEDIDVIEGLEIALRMMKV------GEV 153 (397)
T ss_pred eEEeeeecCCCCCCCCCCCcEEEEEEEEEEC-Cc-ceecccc----ceEEecCCccchhHHHHHHHHhcCc------cce
Confidence 55677888888 679999999999999996 55 7775433 47888887 4799999999999999 899
Q ss_pred EEEEEcCCCccC-CCCCCCCCCCCCcEEEEEEEeeee-cCcccccchhh
Q psy8371 468 SDFFASYELCFG-ALGCPPRIPAKADLLFEVHLINFS-IDPQVVRSSAD 514 (528)
Q Consensus 468 ~~~~vP~~layG-~~g~~~~IPp~a~LvfeveL~~~~-~~~~~~~~~~~ 514 (528)
+.++++|.|||| ..++++.||||++|.|+|+|++|. +....+.+.+.
T Consensus 154 a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~ 202 (397)
T KOG0543|consen 154 ALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE 202 (397)
T ss_pred EEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH
Confidence 999999999999 566889999999999999999999 66777777665
No 19
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.36 E-value=1.1e-12 Score=123.08 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=67.5
Q ss_pred CCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCCC
Q psy8371 403 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALG 482 (528)
Q Consensus 403 ~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~g 482 (528)
.++.|+.|++||++++. ||++||||+.++ +|+.|.+|.+++++||+++|.+|++ |+++.+.+||++|||.+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~-dG~v~dst~~~~-~P~~f~~G~g~vi~gle~aL~gm~~------Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLD-DGSTAESTRNNG-KPALFRLGDGSLSEGLEQQLLGLKV------GDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeC-CCCEEEECCCCC-CCEEEEeCCCCccHHHHHHHcCCCC------CCEEEEEEChHHhcCCCC
Confidence 57899999999999996 999999999876 7999999999999999999999999 899999999999999863
No 20
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-10 Score=110.50 Aligned_cols=72 Identities=29% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCCC
Q psy8371 403 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALG 482 (528)
Q Consensus 403 ~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~g 482 (528)
++..|+.|.+||++++. ||++||+|.... +|+.|.+|.++++|||+++|.+|.+ |++..+.+||+.|||.+.
T Consensus 2 ~i~k~~~V~i~Y~~~~~-dg~v~Dtt~e~~-~P~~~i~G~g~li~glE~al~g~~~------Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVE-DGEVVDTTDENY-GPLTFIVGAGQLIPGLEEALLGKEV------GEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEec-CCcEEEcccccC-CCeEEEecCCCcchhHHHHHhCCCC------CceeEEEeCchHhcCCCC
Confidence 46789999999999997 799999998844 5999999999999999999999999 899999999999999863
No 21
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.03 E-value=4.2e-10 Score=109.15 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=65.7
Q ss_pred CCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCCC
Q psy8371 403 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALG 482 (528)
Q Consensus 403 ~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~g 482 (528)
+++.++.|+++|+.++. ||++|++|+.. .|+.|.+|.++++|+|+++|.+|++ |++..+.+||+.|||.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~-dG~v~dst~~~--~Pl~~~~G~g~lipglE~aL~G~~~------Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTE-DGVLVDESPVS--APLDYLHGHGSLISGLETALEGHEV------GDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeC-CCCEEEecCCC--CCeEEEeCCCcchHHHHHHHcCCCC------CCEEEEEEChHHhcCCCC
Confidence 35789999999999996 89999999874 5999999999999999999999999 899999999999999864
No 22
>KOG0543|consensus
Probab=98.85 E-value=2.9e-09 Score=111.89 Aligned_cols=81 Identities=36% Similarity=0.664 Sum_probs=72.7
Q ss_pred cCCCC-CCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCC
Q psy8371 398 KGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYEL 476 (528)
Q Consensus 398 ~g~G~-~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~l 476 (528)
+|+|. .|..|+.|.+||++++. ||+.||||.+ + .|+.|.+|.+++|.||+.++..|+.
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~-dgt~fdss~d-~-~~~~~~lg~g~vi~~~~~gv~tm~~------------------ 60 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLL-DGTKFDSSRD-G-DPFKFDLGKGSVIKGWDLGVATMKK------------------ 60 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEec-CCeecccccC-C-CceeeecCCCccccccccccccccc------------------
Confidence 35665 49999999999999998 9999999999 5 6999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEee
Q psy8371 477 CFGALGCPPRIPAKADLLFEVHLIN 501 (528)
Q Consensus 477 ayG~~g~~~~IPp~a~LvfeveL~~ 501 (528)
|+.+.||.||++++|.|+|+|+|
T Consensus 61 --g~~~~pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 61 --GEAGSPPKIPSNATLLFEVELLD 83 (397)
T ss_pred --cccCCCCCCCCCcceeeeecccC
Confidence 36678899999999999999853
No 23
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.45 E-value=1.5e-06 Score=93.28 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCCCCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCcc
Q psy8371 399 GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCF 478 (528)
Q Consensus 399 g~G~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~lay 478 (528)
.+.++++.||.|+++|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++ |+++.+.+|....|
T Consensus 142 ~~~~~~~~gD~V~v~~~~~~--dg~~~~~~~~---~~~~~~lg~~~~~~~~ee~L~G~k~------Gd~~~~~v~~p~~~ 210 (408)
T TIGR00115 142 VERRAAEKGDRVTIDFEGFI--DGEAFEGGKA---ENFSLELGSGQFIPGFEEQLVGMKA------GEEKEIKVTFPEDY 210 (408)
T ss_pred ccccccCCCCEEEEEEEEEE--CCEECcCCCC---CCeEEEECCCCcchhHHHHhCCCCC------CCeeEEEecCcccc
Confidence 34456889999999999986 8999987643 4799999999999999999999999 89999999988888
Q ss_pred CCCCCCCCCCCCCcEEEEEEEeeeecCc
Q psy8371 479 GALGCPPRIPAKADLLFEVHLINFSIDP 506 (528)
Q Consensus 479 G~~g~~~~IPp~a~LvfeveL~~~~~~~ 506 (528)
+.... ++.++.|.|++.++....
T Consensus 211 ~~~~~-----~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 211 HAEEL-----AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred CcccC-----CCCeEEEEEEEEEeccCC
Confidence 87654 468999999999998653
No 24
>PRK01490 tig trigger factor; Provisional
Probab=98.29 E-value=5.7e-06 Score=89.52 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCC
Q psy8371 402 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGAL 481 (528)
Q Consensus 402 ~~p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~ 481 (528)
++++.||.|+++|+++. +|++|+++.. .++.|.+|.+.+++||+++|.||++ |+++.+.++....|+..
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~~---~~~~~~lg~~~~~~~fee~L~G~k~------Ge~~~~~~~~p~~~~~~ 224 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGKA---EDFSLELGSGRFIPGFEEQLVGMKA------GEEKTIDVTFPEDYHAE 224 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCCC---CceEEEEcCCCcchhHHHHhCCCCC------CCeeEEEecCccccccc
Confidence 45899999999999997 8999987644 3689999999999999999999999 89999988887788765
Q ss_pred CCCCCCCCCCcEEEEEEEeeeecC
Q psy8371 482 GCPPRIPAKADLLFEVHLINFSID 505 (528)
Q Consensus 482 g~~~~IPp~a~LvfeveL~~~~~~ 505 (528)
.. ++.+..|.|+|.++...
T Consensus 225 ~l-----agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 225 DL-----AGKEATFKVTVKEVKEK 243 (435)
T ss_pred cC-----CCCeEEEEEEEEEeccC
Confidence 43 35899999999999864
No 25
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.8e-05 Score=84.52 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred CcCCeEEEEEEEEEEccCceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCCCEEE--EEEcCCCccCCC
Q psy8371 404 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSD--FFASYELCFGAL 481 (528)
Q Consensus 404 p~~Gd~V~v~Y~g~~~~dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~--~~vP~~layG~~ 481 (528)
++.||.|+|+|.|+. ||..|...-..+ +.+.||++++||||+++|.||+. |++.. +++|.+|.-+..
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~ae~---~~l~lGs~~fipgFe~~LvG~k~------Ge~k~i~vtFP~dy~a~~L 226 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGKAEN---FSLELGSGRFIPGFEDQLVGMKA------GEEKDIKVTFPEDYHAEEL 226 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCccccC---eEEEEcCCCchhhHHhhhccCcC------CCeeEEEEEcccccchhHh
Confidence 889999999999987 899998765554 89999999999999999999999 78877 455655444432
Q ss_pred CCCCCCCCCCcEEEEEEEeeeecC
Q psy8371 482 GCPPRIPAKADLLFEVHLINFSID 505 (528)
Q Consensus 482 g~~~~IPp~a~LvfeveL~~~~~~ 505 (528)
.+.+..|.|+|..+...
T Consensus 227 -------aGK~a~F~V~vkeVk~~ 243 (441)
T COG0544 227 -------AGKEATFKVKVKEVKKR 243 (441)
T ss_pred -------CCCceEEEEEEEEEeec
Confidence 24678999999998854
No 26
>KOG0545|consensus
Probab=96.28 E-value=0.0029 Score=63.64 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=65.7
Q ss_pred hhhhhhccccCCCCC--CcCCeEEEEEEEEEEcc-CceeeeecCCCCCcceEEecCCCCchHHHHHHHhcCccccccCCC
Q psy8371 389 ELLEGKIKEKGFGEN--PVLGAHVQVHYMYYAEA-NELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSG 465 (528)
Q Consensus 389 e~L~~k~Lp~g~G~~--p~~Gd~V~v~Y~g~~~~-dG~~fdss~~~~~~P~~f~lG~~~li~g~eeaL~~M~~G~~~~~G 465 (528)
+.+..++|.+|.|.- -..|..|.+||...... .++++|+|...+ +|..+.+|..--+|-|+..|..|.+ +
T Consensus 10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~g-kPmeiiiGkkFkL~VwE~il~tM~v------~ 82 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVG-KPMEIIIGKKFKLEVWEIILTTMRV------H 82 (329)
T ss_pred hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcC-CCeEEeeccccccHHHHHHHHHHhh------h
Confidence 457778899999975 45899999999988653 356999999998 8999999998899999999999999 6
Q ss_pred CEEEEEEc
Q psy8371 466 EKSDFFAS 473 (528)
Q Consensus 466 e~~~~~vP 473 (528)
|.+.|.+.
T Consensus 83 EvaqF~~d 90 (329)
T KOG0545|consen 83 EVAQFWCD 90 (329)
T ss_pred hHHHhhhh
Confidence 77766553
No 27
>KOG0549|consensus
Probab=95.65 E-value=0.0084 Score=57.60 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=45.0
Q ss_pred EecCCCCchHHHHHHHhcCccccccCCCCEEEEEEcCCCccCCCCCCCCCCCCCcEEEEEEEeeeec
Q psy8371 438 FQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSI 504 (528)
Q Consensus 438 f~lG~~~li~g~eeaL~~M~~G~~~~~Ge~~~~~vP~~layG~~g~~~~IPp~a~LvfeveL~~~~~ 504 (528)
|.+|.+.+||+.++++.+|+. |+++++++||+++||..+... -..++|.+.++.+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~------ge~rkvv~pp~l~fg~~~~~~----~~~~~~~~~l~~~~~ 57 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCN------GEKRKVVIPPHLGFGEGGRGD----LNILVITILLVLLFR 57 (188)
T ss_pred CcccceEEecCHHHHhhhhhc------cccceeccCCccccccccccc----ccceEEEeeeeehhh
Confidence 356888999999999999999 899999999999999665432 234667777665543
No 28
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.37 E-value=12 Score=41.45 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHhhhcCCCCcEEEEEcCC-ccchHHHHHHHHHHhhceEEEchHHHHHHHHH
Q psy8371 183 DYFSKALDNPEKPFLAILGGA-KVADKIQLIENLLDKVNEMIIGGGMSYTFLKE 235 (528)
Q Consensus 183 ~~L~~~~~~p~rP~vailGGa-KvsdKi~~i~~l~~~vD~iiigG~ma~tFl~a 235 (528)
..+..+++...++.++|+||- |=.|.-.+.+.+.+++|.+++.|.-+..+...
T Consensus 377 ~s~~~al~~~~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 377 GATVAALDGLAQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 344444444456789999995 45566666777777899999999777666554
No 29
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=64.84 E-value=1.5e+02 Score=33.61 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=47.4
Q ss_pred CCCCcEEEEEcCCccchHHHHHHHHHHhhceEEEc----hHHHHHHHHHHcCCCCCccc-cCCcch--HHHHHHHHHHHh
Q psy8371 191 NPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIG----GGMSYTFLKELKGMNIGGSL-YDPEGA--KIVKKLVEKAEK 263 (528)
Q Consensus 191 ~p~rP~vailGGaKvsdKi~~i~~l~~~vD~iiig----G~ma~tFl~a~~g~~ig~s~-~e~~~~--~~a~~~~~~a~~ 263 (528)
.+.+|.+.|+.|..=|-|=-..+.++.....+++- |.-....-.|.+-+.-|+|. ++.-.. +.-+.+++.|++
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~ 444 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARA 444 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999888753333330 22111111121233445654 343322 234568889999
Q ss_pred CCCeEE
Q psy8371 264 NNVKLH 269 (528)
Q Consensus 264 ~~~~i~ 269 (528)
+|..+.
T Consensus 445 ~gv~v~ 450 (526)
T TIGR01663 445 AGIPCR 450 (526)
T ss_pred cCCeEE
Confidence 887653
No 30
>PRK06988 putative formyltransferase; Provisional
Probab=56.96 E-value=40 Score=35.22 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecc
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENL 110 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~ 110 (528)
-++|+++.|+++|...+.+.+|..||.++ ....++.++..+ .|.|+....+...++..+.++++++-=+++.---
T Consensus 13 ~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~----~~~~~v~~~A~~-~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 13 VGVRCLQVLLARGVDVALVVTHEDNPTEN----IWFGSVAAVAAE-HGIPVITPADPNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCccC----cCCCHHHHHHHH-cCCcEEccccCCCHHHHHHHHhcCCCEEEEehhc
Confidence 46899999999998877889998888642 233455544444 4888876566666777777777666444444333
Q ss_pred cCcc
Q psy8371 111 RFYV 114 (528)
Q Consensus 111 Rf~~ 114 (528)
++.+
T Consensus 88 ~iip 91 (312)
T PRK06988 88 HMIP 91 (312)
T ss_pred cccC
Confidence 4444
No 31
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.80 E-value=45 Score=36.15 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=32.9
Q ss_pred CcEEEEEcC-CccchHHHHHHHHHHhhceEEEchHHHHHHHHH
Q psy8371 194 KPFLAILGG-AKVADKIQLIENLLDKVNEMIIGGGMSYTFLKE 235 (528)
Q Consensus 194 rP~vailGG-aKvsdKi~~i~~l~~~vD~iiigG~ma~tFl~a 235 (528)
+|.++|+|| .|-.|.-.+++.+...+|.+++-|..+..+...
T Consensus 349 ~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~~ 391 (459)
T PRK02705 349 GPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQR 391 (459)
T ss_pred CCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHHH
Confidence 578999998 667777788887777899998888877665543
No 32
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.62 E-value=43 Score=36.11 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=32.8
Q ss_pred HHHhhhcCCCCcEEEEEcC-CccchHHHHHHHHHHhhceEEEchHHHHHH
Q psy8371 184 YFSKALDNPEKPFLAILGG-AKVADKIQLIENLLDKVNEMIIGGGMSYTF 232 (528)
Q Consensus 184 ~L~~~~~~p~rP~vailGG-aKvsdKi~~i~~l~~~vD~iiigG~ma~tF 232 (528)
++..+++.+.++.++|+|| .|--|--.+++.+.+.+|.+++.|--+..+
T Consensus 303 s~~~al~~~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i 352 (418)
T PRK00683 303 AVEKALLAVGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEI 352 (418)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHH
Confidence 4444454455678889997 565555567777777788888888654433
No 33
>PRK05826 pyruvate kinase; Provisional
Probab=52.65 E-value=2.1e+02 Score=31.95 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=113.9
Q ss_pred CcHHHHHHHHHCCCCeEE--EEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHH-----hcCCCCCc
Q psy8371 31 AALDTIKYALDKGAKSVV--LMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEA-----CADPPAGS 103 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vi--l~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~-----i~~l~~g~ 103 (528)
.+..+|+.|++.|.. +. =+||- -+ +....+-.....+++.+|++|...-|.-||+.+-- --.|++|+
T Consensus 17 ~~~e~l~~li~~G~~-v~RiN~sHg-~~----~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~~i~l~~G~ 90 (465)
T PRK05826 17 DSPENLEKLIEAGVN-VVRLNFSHG-SH----EEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKEGKITLKTGD 90 (465)
T ss_pred CCHHHHHHHHHcCCC-EEEEEcCCC-CH----HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccCCcEEecCCC
Confidence 677899999999987 43 35772 22 22223334445567778999999999999987521 12467788
Q ss_pred EEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEecccccccc-------cC---------cccccc
Q psy8371 104 IILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHR-------AH---------SSMLGE 167 (528)
Q Consensus 104 illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDAF~~aHR-------~h---------aS~~g~ 167 (528)
.+.|-+-+ . .+. ++ +.+--+ ...|.+.+.+--.||++|.--...= -. .|--|+
T Consensus 91 ~v~l~~~~--~-~~~---~~--~~i~v~---~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgv 159 (465)
T PRK05826 91 KFTLDTDQ--K-EEG---DK--ERVGVD---YKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGI 159 (465)
T ss_pred EEEEEecc--c-cCC---CC--CEEEec---hHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCcee
Confidence 77765332 1 111 11 111111 2468888888888999995322210 00 011111
Q ss_pred ccccc--chhhhHHHHHHHHHhhhcCC-------------------------CCcEEEEEcCCccchHHHHHHHH---HH
Q psy8371 168 GFEQR--ASGFLLKKELDYFSKALDNP-------------------------EKPFLAILGGAKVADKIQLIENL---LD 217 (528)
Q Consensus 168 ~~~~~--~aG~l~ekEl~~L~~~~~~p-------------------------~rP~vailGGaKvsdKi~~i~~l---~~ 217 (528)
.+|.. -.-.|=+++...+..+++.. ..+.+.| -+|+.++-.+ +|| +.
T Consensus 160 nlp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~i--iakIEt~eav-~nldeI~~ 236 (465)
T PRK05826 160 NIPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKI--IAKIERAEAV-DNIDEIIE 236 (465)
T ss_pred eccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceE--EEEEcCHHHH-HhHHHHHH
Confidence 11100 01112244444444444321 1101111 1577665543 555 66
Q ss_pred hhceEEEchHHHHHHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeEEee
Q psy8371 218 KVNEMIIGGGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFP 271 (528)
Q Consensus 218 ~vD~iiigG~ma~tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i~lP 271 (528)
.+|.|++|=+ .-|.++| .++....-+++++.|+++|..+++-
T Consensus 237 ~~DgImIgrg--------DLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~A 278 (465)
T PRK05826 237 ASDGIMVARG--------DLGVEIP----DEEVPGLQKKIIRKAREAGKPVITA 278 (465)
T ss_pred HcCEEEECcc--------hhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEEE
Confidence 7899988743 3455555 2344556688999999999876654
No 34
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=50.41 E-value=67 Score=33.42 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecc
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENL 110 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~ 110 (528)
-++|+++.|++++...+.+++|-.+|.+. ...+...++.++. +..|.||.-..+.-.++..+.++++++-=+++.-.-
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r-~~~~~~~~v~~~a-~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 88 (309)
T PRK00005 11 FAVPSLKALLESGHEVVAVVTQPDRPAGR-GKKLTPSPVKQLA-LEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAYG 88 (309)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCC-CCCCCCCHHHHHH-HHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehhh
Confidence 46899999999888867688887777652 2233334444444 346888754455445667777888777656665555
Q ss_pred cCcccc
Q psy8371 111 RFYVEE 116 (528)
Q Consensus 111 Rf~~~E 116 (528)
++.+++
T Consensus 89 ~iip~~ 94 (309)
T PRK00005 89 QILPKA 94 (309)
T ss_pred cccCHH
Confidence 666543
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=49.82 E-value=3e+02 Score=28.00 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=86.9
Q ss_pred EEEEEecCCCCCCC----CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCCh--
Q psy8371 17 RVLMRVDFNVPMKE----AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGP-- 90 (528)
Q Consensus 17 ~VlvRvD~NvP~~~----~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~-- 90 (528)
||++|+|-+.=+.- +++-=-+.|.++|.. |+..... .+. ...+.++ .-|.+|..+++..++
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~-v~f~~~~-~~~----------~~~~~i~-~~g~~v~~~~~~~~~~~ 67 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAE-VAFACKP-LPG----------DLIDLLL-SAGFPVYELPDESSRYD 67 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCE-EEEEeCC-CCH----------HHHHHHH-HcCCeEEEecCCCchhh
Confidence 58999999976652 777666677788987 5555332 111 1234443 346677666554321
Q ss_pred H---HHHHhcCCCCCcEEEEecccCcccccccCCCccccccccChHHHHHHHHHHhccCCEEEecccccccccCcccccc
Q psy8371 91 K---VEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGE 167 (528)
Q Consensus 91 ~---~~~~i~~l~~g~illLEN~Rf~~~E~~~~~~~~~~~~~~~~~~~~~~~~~La~l~DiyVnDAF~~aHR~haS~~g~ 167 (528)
+ ..+.+++. .-|++++++-++.++.....+...-..+-- +.|.. -.-.||+++|-.++...-.+... +
T Consensus 68 d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i-----DD~~~-~~~~~D~vin~~~~~~~~~y~~~--~ 138 (279)
T TIGR03590 68 DALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVI-----DDLAD-RPHDCDLLLDQNLGADASDYQGL--V 138 (279)
T ss_pred hHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEE-----ecCCC-CCcCCCEEEeCCCCcCHhHhccc--C
Confidence 2 33444444 348999998877654321100000000000 01110 01156777776654211111110 1
Q ss_pred c-ccccchhh---hHHHHHHHHHhhhc-C-CCCcEEEEEcCCccch-HHHHHHHHH
Q psy8371 168 G-FEQRASGF---LLKKELDYFSKALD-N-PEKPFLAILGGAKVAD-KIQLIENLL 216 (528)
Q Consensus 168 ~-~~~~~aG~---l~ekEl~~L~~~~~-~-p~rP~vailGGaKvsd-Ki~~i~~l~ 216 (528)
+ -..-+.|. ++.+|.....+... . +.+..+..+||+-... ...+++.|.
T Consensus 139 ~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~ 194 (279)
T TIGR03590 139 PANCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALA 194 (279)
T ss_pred cCCCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHh
Confidence 1 01136676 88888876654322 2 1234667777776644 234555554
No 36
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=47.64 E-value=76 Score=33.15 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecc
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENL 110 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~ 110 (528)
-++|+++.|+++|-..+.++++-.+|.+. ..++...|+.++..+ .|.||.-.++.-.++..+.++++++-=+++.---
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r-~~~~~~~~v~~~A~~-~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 88 (313)
T TIGR00460 11 FSLPVLEELREDNFEVVGVVTQPDKPAGR-GKKLTPPPVKVLAEE-KGIPVFQPEKQRQLEELPLVRELKPDVIVVVSFG 88 (313)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCccCC-CCCCCCChHHHHHHH-cCCCEEecCCCCcHHHHHHHHhhCCCEEEEccch
Confidence 36899999999998866688887777652 233455555555555 4888866555544566667777777434444444
Q ss_pred cCcc
Q psy8371 111 RFYV 114 (528)
Q Consensus 111 Rf~~ 114 (528)
++.+
T Consensus 89 ~iip 92 (313)
T TIGR00460 89 KILP 92 (313)
T ss_pred hhCC
Confidence 4444
No 37
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.98 E-value=79 Score=33.28 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEE
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIIL 106 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~ill 106 (528)
=+.|+++.|+++|-.+|-+.+|-.||.|. ..++...||...-.+ +|.||.--.+..+++..+.++++.+-=++.
T Consensus 12 fa~~~L~~L~~~~~eivaV~Tqpdkp~gR-~~~l~~spVk~~A~~-~~ipv~qP~~l~~~e~~~~l~~l~~D~ivv 85 (307)
T COG0223 12 FAVPSLEALIEAGHEIVAVVTQPDKPAGR-GKKLTPSPVKRLALE-LGIPVFQPEKLNDPEFLEELAALDPDLIVV 85 (307)
T ss_pred hhHHHHHHHHhCCCceEEEEeCCCCccCC-CCcCCCChHHHHHHH-cCCceeccccCCcHHHHHHHhccCCCEEEE
Confidence 36789999999998878899999999874 567777777766554 477765555666778889999886644443
No 38
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.75 E-value=59 Score=34.45 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=53.7
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHhcCCCeeE
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTLLKKDITF 83 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~l~~~V~f 83 (528)
+++||.|++--++..|.++ +-+=.+.-|.+.|||+| +++|.+|--.. +.-+.+|.+-+|+.|+.. |.+-.+
T Consensus 53 ~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~-g~d~vi 131 (332)
T PRK00553 53 SVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKA-GVTRVT 131 (332)
T ss_pred CCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhc-CCCEEE
Confidence 5799999999999888765 66667778888899865 78888863211 122467888899888774 343222
Q ss_pred cCCCCChH
Q psy8371 84 LDDCVGPK 91 (528)
Q Consensus 84 ~~d~~g~~ 91 (528)
.=|...+.
T Consensus 132 t~DlH~~~ 139 (332)
T PRK00553 132 LTDIHSDQ 139 (332)
T ss_pred EEeCChHH
Confidence 23444333
No 39
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=58 Score=29.64 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCCEEEEEecCCCCCC---CCcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCCh
Q psy8371 14 AGKRVLMRVDFNVPMK---EAALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGP 90 (528)
Q Consensus 14 ~gk~VlvRvD~NvP~~---~~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~ 90 (528)
+|+...+++=.|.--. .+-+-..+.|.++|+. +||++..|++- ...|+. .|.+|...+. .
T Consensus 33 ~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvd-vvi~~~iG~~a------------~~~l~~-~GIkv~~~~~---~ 95 (121)
T COG1433 33 DGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVD-VVIASNIGPNA------------YNALKA-AGIKVYVAPG---G 95 (121)
T ss_pred CCcEEEEEEeecccccccCcchHHHHHHHHHcCCC-EEEECccCHHH------------HHHHHH-cCcEEEecCC---C
Confidence 5666666666654111 1555578899999999 99999999873 234444 3667766655 4
Q ss_pred HHHHHhcCCCCCcE
Q psy8371 91 KVEEACADPPAGSI 104 (528)
Q Consensus 91 ~~~~~i~~l~~g~i 104 (528)
.++++|+++..|+.
T Consensus 96 ~V~e~i~~~~~g~l 109 (121)
T COG1433 96 TVEEAIKAFLEGEL 109 (121)
T ss_pred CHHHHHHHHhcCCc
Confidence 67777877777764
No 40
>PRK05337 beta-hexosaminidase; Provisional
Probab=43.98 E-value=85 Score=33.31 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=64.3
Q ss_pred ccccccCCCEEEEEecCCCCCCCCc--------HHHHHHHHHCCCCeEEEEccCCCCCCC-CCCCCChHHHHHHHHHhcC
Q psy8371 8 VDLLNLAGKRVLMRVDFNVPMKEAA--------LDTIKYALDKGAKSVVLMSHLGRPDGS-KNLKYSLKPVAEELKTLLK 78 (528)
Q Consensus 8 i~d~~~~gk~VlvRvD~NvP~~~~~--------lpTI~~l~~~gak~vil~sHlGRP~g~-~~~~~Sl~~~a~~L~~~l~ 78 (528)
++-|.-.|.. -.+-+++.|+++.+ ++--+.++++|+. -|+++|.--|.=+ ..-.+|-.-+-+.|.+.+|
T Consensus 164 ~KHFpG~G~~-~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~~g~~-~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elG 241 (337)
T PRK05337 164 GKHFPGHGAV-EADSHVETPVDERPLEEIRAEDMAPFRALIAAGLD-AVMPAHVIYPQVDPRPAGFSRYWLQDILRQELG 241 (337)
T ss_pred ecccCCCCCC-cCCCCCCCCCCCCCHHHHHhhhHHHHHHHHhcCCC-EEEeCceeccCCCCCCCcCCHHHHHHHHHHhcC
Confidence 3444434432 24566777876533 4455778999988 7899998877421 2234555556689999999
Q ss_pred CCeeEcCCCC--------ChHHHHHhcCCCCC-cEEEEeccc
Q psy8371 79 KDITFLDDCV--------GPKVEEACADPPAG-SIILLENLR 111 (528)
Q Consensus 79 ~~V~f~~d~~--------g~~~~~~i~~l~~g-~illLEN~R 111 (528)
.+=..+.|+. +...+.++++++.| |++|+-|-.
T Consensus 242 F~G~ViSD~l~m~a~~~~~~~~~~~~~al~AG~Dl~l~~~~~ 283 (337)
T PRK05337 242 FDGVIFSDDLSMEGAAVAGDYAERAQAALDAGCDMVLVCNNR 283 (337)
T ss_pred CCEEEEecchhhhhhhhcCCHHHHHHHHHHcCCCEEeeCCCH
Confidence 8855555554 22333445566666 888887764
No 41
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.65 E-value=80 Score=34.21 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHhhhcCCCCcEEEEEcCC-ccchHHHHHHHHHHhhceEEEchHHHHHHH
Q psy8371 184 YFSKALDNPEKPFLAILGGA-KVADKIQLIENLLDKVNEMIIGGGMSYTFL 233 (528)
Q Consensus 184 ~L~~~~~~p~rP~vailGGa-KvsdKi~~i~~l~~~vD~iiigG~ma~tFl 233 (528)
++..+++.-.+|.++|+||- |-.|-=.+++.+.+.+|.+++.|--+..+.
T Consensus 333 s~~~al~~~~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l~ 383 (445)
T PRK04308 333 ATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIR 383 (445)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHHH
Confidence 33333433345789999977 555555555555567899888886554443
No 42
>KOG3350|consensus
Probab=41.98 E-value=27 Score=34.09 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=26.1
Q ss_pred ccCCCEEEEEecCCCCCCC------------------------CcHHHHHHHHHCCCCeEEEEc
Q psy8371 12 NLAGKRVLMRVDFNVPMKE------------------------AALDTIKYALDKGAKSVVLMS 51 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~------------------------~~lpTI~~l~~~gak~vil~s 51 (528)
.+.| +=|+--|+|.|.+. .+.-||++|...+-| ||+++
T Consensus 111 e~yg-~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~k-vilCt 172 (217)
T KOG3350|consen 111 ELYG-TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKK-VILCT 172 (217)
T ss_pred Hhcc-ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCce-EEEec
Confidence 4667 57888999999973 455677777655554 66663
No 43
>PRK06801 hypothetical protein; Provisional
Probab=40.54 E-value=4.4e+02 Score=27.38 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=98.1
Q ss_pred HHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCC-cEEEE--------ec
Q psy8371 39 ALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAG-SIILL--------EN 109 (528)
Q Consensus 39 l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g-~illL--------EN 109 (528)
.-+.++- |||.-+.+.-+ +...-.+.+.+..+.+....||...=|- |...+...+.++.| +-+|+ ||
T Consensus 38 Ae~~~~P-vIl~~~~~~~~--~~~~~~~~~~~~~~a~~~~vpV~lHlDH-~~~~e~i~~Ai~~GftSVm~D~S~l~~eeN 113 (286)
T PRK06801 38 AKQERSP-FIINIAEVHFK--YISLESLVEAVKFEAARHDIPVVLNLDH-GLHFEAVVRALRLGFSSVMFDGSTLEYEEN 113 (286)
T ss_pred HHHHCCC-EEEEeCcchhh--cCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHhCCcEEEEcCCCCCHHHH
Confidence 3345777 66666554432 2222346666677777778888775442 22222222223334 44454 34
Q ss_pred ccCcc--------------ccc---ccCCCc----c-ccccccChHHHHHHHHHHhccCCEEEecccccccccCcccccc
Q psy8371 110 LRFYV--------------EEE---GKGVNA----A-GEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGE 167 (528)
Q Consensus 110 ~Rf~~--------------~E~---~~~~~~----~-~~~~~~~~~~~~~~~~~La~l~DiyVnDAF~~aHR~haS~~g~ 167 (528)
+|.-. .|- +..++. + +.....+|++...|+++. -+|..-- +||++|..+....
T Consensus 114 i~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~t--gvD~LAv-aiGt~Hg~y~~~~-- 188 (286)
T PRK06801 114 VRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRT--GIDALAV-AIGNAHGKYKGEP-- 188 (286)
T ss_pred HHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHH--CcCEEEe-ccCCCCCCCCCCC--
Confidence 44321 000 000000 0 112355777778888763 6687766 9999999886421
Q ss_pred cccccchhhhHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHHHH-hhceEEEchHHHHHHHHH
Q psy8371 168 GFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLD-KVNEMIIGGGMSYTFLKE 235 (528)
Q Consensus 168 ~~~~~~aG~l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l~~-~vD~iiigG~ma~tFl~a 235 (528)
-.++-.-+++. +.+ .-| +++.|||.++|- -+..+++ .+++|=++..+-..|..+
T Consensus 189 -----~l~~e~l~~i~---~~~---~~P-LVlHGGSgi~~e--~~~~~i~~Gi~KINv~T~~~~a~~~~ 243 (286)
T PRK06801 189 -----KLDFARLAAIH---QQT---GLP-LVLHGGSGISDA--DFRRAIELGIHKINFYTGMSQAALAA 243 (286)
T ss_pred -----CCCHHHHHHHH---Hhc---CCC-EEEECCCCCCHH--HHHHHHHcCCcEEEehhHHHHHHHHH
Confidence 12333334433 333 356 688999999973 3455555 699999999999999877
No 44
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.64 E-value=53 Score=28.36 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=45.2
Q ss_pred CCCCCCCcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCC--ChHHHHHhcC-CCC
Q psy8371 25 NVPMKEAALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCV--GPKVEEACAD-PPA 101 (528)
Q Consensus 25 NvP~~~~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~--g~~~~~~i~~-l~~ 101 (528)
+.|+. .+..+|++|.++|-+ ++++|-- ...|-+.++++| +.+|.++.. ++++ +..+...+++ ...
T Consensus 13 ~~~ip-ga~e~l~~L~~~g~~-~~~lTNn--------s~~s~~~~~~~L-~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~~ 80 (101)
T PF13344_consen 13 NEPIP-GAVEALDALRERGKP-VVFLTNN--------SSRSREEYAKKL-KKLGIPVDE-DEIITSGMAAAEYLKEHKGG 80 (101)
T ss_dssp TEE-T-THHHHHHHHHHTTSE-EEEEES---------SSS-HHHHHHHH-HHTTTT--G-GGEEEHHHHHHHHHHHHTTS
T ss_pred CCcCc-CHHHHHHHHHHcCCC-EEEEeCC--------CCCCHHHHHHHH-HhcCcCCCc-CEEEChHHHHHHHHHhcCCC
Confidence 34444 789999999999987 7788753 234778899999 448988766 5555 4555555555 344
Q ss_pred CcEEEE
Q psy8371 102 GSIILL 107 (528)
Q Consensus 102 g~illL 107 (528)
..|.++
T Consensus 81 ~~v~vl 86 (101)
T PF13344_consen 81 KKVYVL 86 (101)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 445444
No 45
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.07 E-value=94 Score=32.52 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=46.8
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~ 76 (528)
+++||.|++.-+++-|.++ +-+=.+..|.+.|||+| +++|.++--.. +.-+.+|.+-+|+.|+..
T Consensus 44 ~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~ 116 (309)
T PRK01259 44 NVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLETA 116 (309)
T ss_pred CCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhhc
Confidence 5799999999998878765 55666777788999755 67777762211 112467888899988764
No 46
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=36.05 E-value=1.2e+02 Score=31.55 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=47.3
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCC--C--CCCCCCChHHHHHHHHH
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPD--G--SKNLKYSLKPVAEELKT 75 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~--g--~~~~~~Sl~~~a~~L~~ 75 (528)
+++||.|++.-.+..| ++ +-+=.+.-|.+.|||+| +++|.++--. . +.-+.+|.+-+|+.|+.
T Consensus 46 ~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~ 116 (301)
T PRK07199 46 PVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG 116 (301)
T ss_pred CCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh
Confidence 6799999999999888 64 66667778888999866 5788876321 1 11257799999999985
No 47
>KOG3729|consensus
Probab=35.09 E-value=15 Score=41.10 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEc
Q psy8371 18 VLMRVDFNVPMKEAALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFL 84 (528)
Q Consensus 18 VlvRvD~NvP~~~~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~ 84 (528)
=+||+|||-|+ +|+.+++.--| .+|-.+|-..-+.|+.+.-|+.+-++..-|+++.-.
T Consensus 330 G~vR~DF~~P~------Sl~Eyl~S~~K---~~s~~~~~~~v~~P~~~~L~s~~S~~~~~GtD~~~~ 387 (715)
T KOG3729|consen 330 GVVRMDFGRPI------SLTEYLASITK---SLSSNHRTRPVRMPKLSTLFSYRSLVPWHGTDSETV 387 (715)
T ss_pred CeEEEecCCCc------cHHHHHHhhhh---hhhhccccccccccchhhcccCcccccccCCccchh
Confidence 37899999999 57777777667 345555554334566666666666666666665543
No 48
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=35.08 E-value=1.2e+02 Score=31.23 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCC-ChHHHHHhcCCCC-CcEEEE
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCV-GPKVEEACADPPA-GSIILL 107 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~-g~~~~~~i~~l~~-g~illL 107 (528)
.+..+|+.|.++|-+ +++++.-+++ |-+.++++|+++.+.++..-.=+. |......++...+ +.|.++
T Consensus 28 ga~e~l~~L~~~g~~-~iflTNn~~~--------s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~vi 97 (269)
T COG0647 28 GAAEALKRLKAAGKP-VIFLTNNSTR--------SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVI 97 (269)
T ss_pred hHHHHHHHHHHcCCe-EEEEeCCCCC--------CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEE
Confidence 888999999999998 8888875443 667799999999998887633332 6666677776544 566554
No 49
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=33.82 E-value=41 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred EEEEccCCCCCCCCCCCCChHHHHHHHHHhc-CCCeeEcCC-CCChHHHHHhcCCCC---CcEEEEecccC
Q psy8371 47 VVLMSHLGRPDGSKNLKYSLKPVAEELKTLL-KKDITFLDD-CVGPKVEEACADPPA---GSIILLENLRF 112 (528)
Q Consensus 47 vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l-~~~V~f~~d-~~g~~~~~~i~~l~~---g~illLEN~Rf 112 (528)
+|+++| |-|... .-.-.++.+++.|++.+ ..+|.+.-- ...|.+.+++++|.. ..|+++-=.-|
T Consensus 2 lllv~H-Gs~~~s-~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 2 LLVVGH-GSPYKD-PYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred EEEEEC-CCCCCc-cHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 688999 444320 12236888899998887 455544311 236778888777743 46777775555
No 50
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=33.21 E-value=1.3e+02 Score=31.44 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~ 76 (528)
+++||.|++--.+.-|.++ +-+=++..|.+.|||+| +++|.++--.. +..+.+|.+-+|+.|+..
T Consensus 35 ~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~~~ 107 (302)
T PLN02369 35 SVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITEA 107 (302)
T ss_pred CCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHHhc
Confidence 5799999999998878765 66677778888999865 67888763211 112467888899988764
No 51
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=32.87 E-value=52 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHH---HhcCCCeeE
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELK---TLLKKDITF 83 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~---~~l~~~V~f 83 (528)
.+.+.|++|.++|-+ |||+|.|+--... -...+++.+-+++. +.|+.|+.+
T Consensus 33 ~v~~~L~~l~~~Gy~-IvIvTNQ~gi~~~-~~~~~~~~~~~ki~~il~~l~ip~~~ 86 (159)
T PF08645_consen 33 GVPEALRELHKKGYK-IVIVTNQSGIGRG-MGEKDLENFHEKIENILKELGIPIQV 86 (159)
T ss_dssp THHHHHHHHHHTTEE-EEEEEE-CCCCCT-BTCCHHHHHHHHHHHHHHHCTS-EEE
T ss_pred hHHHHHHHHHhcCCe-EEEEeCccccccc-cccchHHHHHHHHHHHHHHcCCceEE
Confidence 578899999999997 9999999766431 12335555554444 445777654
No 52
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.73 E-value=1.9e+02 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCcEEEEEcC-CccchHHHHHHHHHHhhceEEEchHHHHHHHHH
Q psy8371 193 EKPFLAILGG-AKVADKIQLIENLLDKVNEMIIGGGMSYTFLKE 235 (528)
Q Consensus 193 ~rP~vailGG-aKvsdKi~~i~~l~~~vD~iiigG~ma~tFl~a 235 (528)
+++.++|+|| .|=.|-=.+.+.+.+.++.+++.|.-+..+...
T Consensus 344 ~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G~~~~~i~~~ 387 (448)
T PRK03803 344 QGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAA 387 (448)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3578999998 465555555555566799998888766665544
No 53
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.06 E-value=1.7e+02 Score=30.92 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=46.8
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCC--CC---CCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPD--GS---KNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~--g~---~~~~~Sl~~~a~~L~~~ 76 (528)
+++|+.|++--.+.-|.++ +-+=.+.-|.+.|||+| +++|.++--. .. ..+.+|.+-+|+.|+..
T Consensus 50 ~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~ 123 (319)
T PRK04923 50 SVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAM 123 (319)
T ss_pred CcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhc
Confidence 5789999999888878765 66666777778899755 6788876321 11 12357899999999875
No 54
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=29.94 E-value=1.2e+02 Score=28.20 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=28.3
Q ss_pred cccccCCCEEEEEecCC------CCCCC------CcH-HHHHHHHHCCCCeEEEEccC
Q psy8371 9 DLLNLAGKRVLMRVDFN------VPMKE------AAL-DTIKYALDKGAKSVVLMSHL 53 (528)
Q Consensus 9 ~d~~~~gk~VlvRvD~N------vP~~~------~~l-pTI~~l~~~gak~vil~sHl 53 (528)
.++|++||-|+++-+-- .+..+ ... --.+.+.++||+-||+..+.
T Consensus 42 ag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 42 AGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred CCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 35699999999975411 11111 122 25678999999976666553
No 55
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=29.71 E-value=1e+02 Score=27.52 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=39.7
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeEE-EEccCCCCCC---CCCCCCChHHHHHHHHH
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSVV-LMSHLGRPDG---SKNLKYSLKPVAEELKT 75 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~vi-l~sHlGRP~g---~~~~~~Sl~~~a~~L~~ 75 (528)
+++|+.|++=-++.-|.++ +.+=+|.-+.+.||++|+ ++|+++--.. ..-+.+|.+-+|+.|+.
T Consensus 44 ~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 44 SVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKLLSA 114 (116)
T ss_dssp --TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHHHHH
T ss_pred cccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHHHHh
Confidence 6889999998888877665 666677788888987554 6777762211 12356788888888875
No 56
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.58 E-value=2e+02 Score=29.68 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=48.0
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCC--C--CCCCCCChHHHHHHHHHhcCCCeeE
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPD--G--SKNLKYSLKPVAEELKTLLKKDITF 83 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~--g--~~~~~~Sl~~~a~~L~~~l~~~V~f 83 (528)
+++||.|++.-.+. |.++ +-+=.+..|-+.|||+| +++|.++--. . +.-+.+|.+-+|+.|+.. +-.|..
T Consensus 43 ~v~g~~v~i~~~~~-~~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~-~d~vit 120 (285)
T PRK00934 43 EIDGEDVVIISTTY-PQDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAY-YDRIIT 120 (285)
T ss_pred CcCCCEEEEEeCCC-CCcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHHHh-cCEEEE
Confidence 68999998877764 4443 56667777888899766 5778876221 1 112468999999999887 444433
Q ss_pred c
Q psy8371 84 L 84 (528)
Q Consensus 84 ~ 84 (528)
+
T Consensus 121 v 121 (285)
T PRK00934 121 I 121 (285)
T ss_pred E
Confidence 3
No 57
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.14 E-value=5.6e+02 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred cHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChH-HHHHHHHHhcCCC
Q psy8371 32 ALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLK-PVAEELKTLLKKD 80 (528)
Q Consensus 32 ~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~-~~a~~L~~~l~~~ 80 (528)
-..+|+.+++.|++.+ |+.-..+.+.+.+++- .+++.|.++...+
T Consensus 22 l~~~l~~~~~~g~~~i----hld~~d~~f~~~~~~g~~~~~~l~~~~~~~ 67 (229)
T PLN02334 22 LAEEAKRVLDAGADWL----HVDVMDGHFVPNLTIGPPVVKALRKHTDAP 67 (229)
T ss_pred HHHHHHHHHHcCCCEE----EEecccCCcCCccccCHHHHHHHHhcCCCc
Confidence 3458899999999833 7766666555666654 4788888886554
No 58
>PLN02285 methionyl-tRNA formyltransferase
Probab=29.06 E-value=1.6e+02 Score=31.13 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHC------CCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCee--EcC-CCCChHHHHHhcCCCC
Q psy8371 31 AALDTIKYALDK------GAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDIT--FLD-DCVGPKVEEACADPPA 101 (528)
Q Consensus 31 ~~lpTI~~l~~~------gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~--f~~-d~~g~~~~~~i~~l~~ 101 (528)
-++++++.|+++ +..++.++++-.||.|. ..++.-.|+.++..+ .|.|.. +.+ ....++..+.++++++
T Consensus 17 fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr-~~~~~~~pv~~~A~~-~gIp~~~v~~~~~~~~~~~~~~l~~~~~ 94 (334)
T PLN02285 17 VAATVLDALLDASQAPDSAFEVAAVVTQPPARRGR-GRKLMPSPVAQLALD-RGFPPDLIFTPEKAGEEDFLSALRELQP 94 (334)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccC-CcccCCCHHHHHHHH-cCCCcceecCccccCCHHHHHHHHhhCC
Confidence 468899999984 67767778888888762 234455566655444 477732 222 3334455566666665
Q ss_pred CcEEEE
Q psy8371 102 GSIILL 107 (528)
Q Consensus 102 g~illL 107 (528)
|++++
T Consensus 95 -Dliv~ 99 (334)
T PLN02285 95 -DLCIT 99 (334)
T ss_pred -CEEEh
Confidence 44444
No 59
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.85 E-value=1.2e+02 Score=33.15 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=48.9
Q ss_pred CcHHH-HHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEec
Q psy8371 31 AALDT-IKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLEN 109 (528)
Q Consensus 31 ~~lpT-I~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN 109 (528)
+++-| +-.+++.|-+ ||+... -+-....+.+.+-+.+|.+|.|+++-.+.+..+++.. ++-.+++||-
T Consensus 89 aAI~~~~l~ll~~GD~-vl~~~~---------~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEt 157 (396)
T COG0626 89 AAISTALLALLKAGDH-VLLPDD---------LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLET 157 (396)
T ss_pred HHHHHHHHHhcCCCCE-EEecCC---------ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeC
Confidence 66666 7788888887 544322 1334555666666669999999999888888877754 5678999986
Q ss_pred c
Q psy8371 110 L 110 (528)
Q Consensus 110 ~ 110 (528)
-
T Consensus 158 P 158 (396)
T COG0626 158 P 158 (396)
T ss_pred C
Confidence 5
No 60
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.42 E-value=1.9e+02 Score=30.42 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=47.2
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~ 76 (528)
+++||.|++--.+..|.++ +-+=.+.-|-+.||++| +++|.++--.. +.-+.+|.+-+|+.|+..
T Consensus 49 ~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~ 121 (320)
T PRK02269 49 SIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVA 121 (320)
T ss_pred CCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhc
Confidence 5799999998898888765 56666677778899755 67888763211 122567899999999875
No 61
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=27.57 E-value=2e+02 Score=30.93 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHhhhcCCCCcEEEEEcCC-ccchHHHHHHHHHHhhceEEEchHHHHHHHHH
Q psy8371 181 ELDYFSKALDNPEKPFLAILGGA-KVADKIQLIENLLDKVNEMIIGGGMSYTFLKE 235 (528)
Q Consensus 181 El~~L~~~~~~p~rP~vailGGa-KvsdKi~~i~~l~~~vD~iiigG~ma~tFl~a 235 (528)
+++....+++.-+++.++|+||. |-.|-=.+.+.+...++.+++-|.-+..+...
T Consensus 319 n~~a~~~al~~~~~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v~~~G~~~~~l~~~ 374 (433)
T TIGR01087 319 NVHATLAALSAFDNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPL 374 (433)
T ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 33344444443345688888874 21121223344444567888888776666554
No 62
>KOG1014|consensus
Probab=26.62 E-value=99 Score=32.62 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=47.7
Q ss_pred HHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEc-CCCCChH-HHH-HhcCCCCCcE-EEEeccc
Q psy8371 36 IKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFL-DDCVGPK-VEE-ACADPPAGSI-ILLENLR 111 (528)
Q Consensus 36 I~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~-~d~~g~~-~~~-~i~~l~~g~i-llLEN~R 111 (528)
.+.|-+||-+ |+|+ +|-++ -|+.+++.+.+.-+.+|+++ -|+-.++ +.+ .-+.|...|| +|.-|+=
T Consensus 66 A~eLAkrG~n-vvLI---sRt~~------KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 66 ARELAKRGFN-VVLI---SRTQE------KLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred HHHHHHcCCE-EEEE---eCCHH------HHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccc
Confidence 3688899999 8888 56554 39999999999999999885 4665443 233 3356677888 6667764
No 63
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=26.51 E-value=2.2e+02 Score=32.72 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHHHhcCCCCCcEEEEecc
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENL 110 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~illLEN~ 110 (528)
-++|+|+.|+++|-..+.+.+|-.||.++ ....|+.+ +.+..|.||.-..+.-.++..+.++++++-=+++.---
T Consensus 11 ~a~~~l~~L~~~~~~i~~V~t~pd~~~~~----~~~~~v~~-~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 85 (660)
T PRK08125 11 IGCVGIEALLAAGYEIAAVFTHTDNPGEN----HFFGSVAR-LAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYR 85 (660)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCCCcCC----CCcCHHHH-HHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEcccc
Confidence 46899999999998744488898888652 22234444 44556888876666656777777888777555555555
Q ss_pred cCcccc
Q psy8371 111 RFYVEE 116 (528)
Q Consensus 111 Rf~~~E 116 (528)
++.++|
T Consensus 86 ~ii~~~ 91 (660)
T PRK08125 86 NLLSDE 91 (660)
T ss_pred ccCCHH
Confidence 555544
No 64
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.88 E-value=2.1e+02 Score=29.04 Aligned_cols=71 Identities=25% Similarity=0.359 Sum_probs=43.0
Q ss_pred hcCCCCcEEEEEcCCccc----------hHHHHHHHHHH--hhceEEEchH-----------HHHHHHHHHcCCCCCccc
Q psy8371 189 LDNPEKPFLAILGGAKVA----------DKIQLIENLLD--KVNEMIIGGG-----------MSYTFLKELKGMNIGGSL 245 (528)
Q Consensus 189 ~~~p~rP~vailGGaKvs----------dKi~~i~~l~~--~vD~iiigG~-----------ma~tFl~a~~g~~ig~s~ 245 (528)
-+.|+++.+.|||+++.. +.+..--.|.+ ++.+||+.|+ |...++ + +|+.-..=+
T Consensus 40 ~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi-~-~GVp~e~Ii 117 (239)
T PRK10834 40 QDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLI-A-AGVDPSDIV 117 (239)
T ss_pred hhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHH-H-cCCCHHHEE
Confidence 346788999999988752 23333333333 5788888886 443333 4 576666556
Q ss_pred cCCcchHHHHHHHHHH
Q psy8371 246 YDPEGAKIVKKLVEKA 261 (528)
Q Consensus 246 ~e~~~~~~a~~~~~~a 261 (528)
+|....+.-+++....
T Consensus 118 ~e~~s~nT~en~~~a~ 133 (239)
T PRK10834 118 LDYAGFRTLDSIVRTR 133 (239)
T ss_pred ecCCCCCHHHHHHHHH
Confidence 7776655555555433
No 65
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=25.42 E-value=1.9e+02 Score=31.99 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=54.2
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHhcCCCeeE
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTLLKKDITF 83 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~l~~~V~f 83 (528)
+++||.|+|--.++-|.++ +-+=.|.-|.+.||++| +++|.+|--.. +..+.+|.+-+|+.|+.. |.+-..
T Consensus 163 ~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~-G~d~Vi 241 (439)
T PTZ00145 163 SIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAM-GVDRVV 241 (439)
T ss_pred CcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHc-CCCeEE
Confidence 6899999998899888775 66667777778899765 67788763311 122467888899999875 333233
Q ss_pred cCCCCChHHH
Q psy8371 84 LDDCVGPKVE 93 (528)
Q Consensus 84 ~~d~~g~~~~ 93 (528)
.-|...+..+
T Consensus 242 tvDlHs~~i~ 251 (439)
T PTZ00145 242 AIDLHSGQIQ 251 (439)
T ss_pred EEecChHHHH
Confidence 3355444433
No 66
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=24.66 E-value=7e+02 Score=24.75 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEcCCccchHHHHHHHH--------HHhhceEEEchHHHHHHHHHHcCCCCCccccCC
Q psy8371 177 LLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENL--------LDKVNEMIIGGGMSYTFLKELKGMNIGGSLYDP 248 (528)
Q Consensus 177 l~ekEl~~L~~~~~~p~rP~vailGGaKvsdKi~~i~~l--------~~~vD~iiigG~ma~tFl~a~~g~~ig~s~~e~ 248 (528)
|++++.+.+.+-.+-|+++.++++|++|-.=.=.+++.+ .+.+|.|++--.=-+++.+-+.|.. .
T Consensus 4 l~k~i~~~~~~~~~~~~~k~i~~~~~~~~~i~e~~~~~~~i~~~~~~~~~~dillv~~Lt~n~lskIAlGi~-------d 76 (207)
T TIGR02536 4 LIKRITEEICTSQQLEEKKYIVALGDSKHAIPEEMLKEFDVSWVTSEQKLADILLVSRLSIKELNNISHGQE-------T 76 (207)
T ss_pred HHHHHHHHHHHHcCCCcCceEEEecCCchhhHHHHHhhcceeecchhhhcCCEEEEccCCHHHHHHHHccCC-------C
Confidence 677888877777777889999999998733222222222 2458999998888888877656642 2
Q ss_pred cchHHHHHHHHHHHhCCCeEEeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHHHHHHccCCeEEEeCCc
Q psy8371 249 EGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPS 328 (528)
Q Consensus 249 ~~~~~a~~~~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~a~ti~wnGP~ 328 (528)
+ ...+++-.+-=.|.+|++..|-.....+ .+..|...+ +..+.|.+.|.+.+.-|.+++.
T Consensus 77 ~---~~~~~I~~~LL~GK~V~v~~eg~e~~~y-----------~~~~p~~l~------~~~~~y~~kL~sfGIk~~~~~~ 136 (207)
T TIGR02536 77 N---EKEKFIIAFLLEGKPIYILKPGIEYSKY-----------ENTAPYALK------QKFQEYEEKLQSFGIEFIDSEN 136 (207)
T ss_pred C---HHHHHHHHHHHCCCeEEEEecccchhcc-----------CccCCHHHH------HHHHHHHHHHHHcCeEEeccch
Confidence 2 1233333444456777776654433222 122343332 7888999999999988888876
Q ss_pred c
Q psy8371 329 G 329 (528)
Q Consensus 329 G 329 (528)
-
T Consensus 137 ~ 137 (207)
T TIGR02536 137 Y 137 (207)
T ss_pred h
Confidence 3
No 67
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=24.00 E-value=2.5e+02 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCCCcHHHHHHHHHCCCCeEEEEccCCCC
Q psy8371 18 VLMRVDFNVPMKEAALDTIKYALDKGAKSVVLMSHLGRP 56 (528)
Q Consensus 18 VlvRvD~NvP~~~~~lpTI~~l~~~gak~vil~sHlGRP 56 (528)
+++=+|.+.|......+.++++.+++...++++.+....
T Consensus 88 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 88 VLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred EEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 444445544443333344444444555545555554443
No 68
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=23.73 E-value=46 Score=37.06 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCCC
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPDG 58 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~g 58 (528)
+.-..|..|.++|+.+||++||+|.+..
T Consensus 191 ~~~~~i~elk~~~vD~iI~LsH~G~~~d 218 (517)
T COG0737 191 AAKKYIPELKGEGVDVIIALSHLGIEDD 218 (517)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCcCcc
Confidence 5556888999988999999999999963
No 69
>PRK10444 UMP phosphatase; Provisional
Probab=23.48 E-value=2.7e+02 Score=28.03 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=38.7
Q ss_pred ccCCCEEEEEecCCCCCCCCcHHHHHHHHHCCCCeEEEEccCCCCCCCCCCCCChHHHHHHHHHhcCCCee
Q psy8371 12 NLAGKRVLMRVDFNVPMKEAALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDIT 82 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~~~lpTI~~l~~~gak~vil~sHlGRP~g~~~~~~Sl~~~a~~L~~~l~~~V~ 82 (528)
|+.| ||++-+ .|+. .+..+|+.|.++|-+ ++++|- |+ ..|.++++++|.+ +|.++.
T Consensus 7 DlDG--tL~~~~--~~~p-~a~~~l~~L~~~g~~-~~~~Tn--~~------~~~~~~~~~~l~~-~G~~~~ 62 (248)
T PRK10444 7 DIDG--VLMHDN--VAVP-GAAEFLHRILDKGLP-LVLLTN--YP------SQTGQDLANRFAT-AGVDVP 62 (248)
T ss_pred eCCC--ceEeCC--eeCc-cHHHHHHHHHHCCCe-EEEEeC--CC------CCCHHHHHHHHHH-cCCCCC
Confidence 4444 455544 4443 788999999999998 677764 33 2367889999966 687765
No 70
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=22.97 E-value=1.1e+02 Score=30.09 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCCCCCCcccccChhHHHHHHHHHccC-CeEEEeCCcccccccchhHHHHHHHHHHH
Q psy8371 293 SGVPDGWMGLDIGPKSRELFKEPIARA-KVIVWNGPSGVFEFENFAKGTKGIMDAVV 348 (528)
Q Consensus 293 ~~i~~~~~~~DIGp~Ti~~~~~~i~~a-~ti~wnGP~GvfE~~~F~~GT~~i~~aia 348 (528)
+..|..| +|=..|+..|-....+| ..|+-.---|+||. +..| .+.+.+.
T Consensus 108 DplpHSW---~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~--~~~~--kLv~eI~ 157 (212)
T COG2054 108 DPLPHSW---EVTSDSISVWIAAKAGATEVVKATDVDGIYEE--DPKG--KLVREIR 157 (212)
T ss_pred CCCCcce---eecccHHHHHHHHHcCCcEEEEEecCCccccc--CCcc--hhhhhhh
Confidence 3567777 78889999999999999 78899999999987 4455 6666664
No 71
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.80 E-value=1.3e+02 Score=24.83 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=27.5
Q ss_pred CCCcEEEEEcC--C---ccchHHHHHHHHHHh-hceEEEch
Q psy8371 192 PEKPFLAILGG--A---KVADKIQLIENLLDK-VNEMIIGG 226 (528)
Q Consensus 192 p~rP~vailGG--a---KvsdKi~~i~~l~~~-vD~iiigG 226 (528)
+.++.++|+|. . |-.+....+..++.. +|.+++.|
T Consensus 39 ~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~ 79 (91)
T PF02875_consen 39 PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTG 79 (91)
T ss_dssp TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEET
T ss_pred cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcC
Confidence 57899999995 3 556667888888886 88888765
No 72
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.60 E-value=4.8e+02 Score=23.38 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=35.3
Q ss_pred EEEEEcCCccc--------hHHHHHHHHHH--hhceEEEchHH-----------HHHHHHHHcCCCCCccccCCcc---h
Q psy8371 196 FLAILGGAKVA--------DKIQLIENLLD--KVNEMIIGGGM-----------SYTFLKELKGMNIGGSLYDPEG---A 251 (528)
Q Consensus 196 ~vailGGaKvs--------dKi~~i~~l~~--~vD~iiigG~m-----------a~tFl~a~~g~~ig~s~~e~~~---~ 251 (528)
.+.|+||..-. ..+.---.|.+ .+..|++.|+. ...++.. +|+.-..-+.|+.. .
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~-~gv~~~~I~~e~~s~~T~ 80 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIE-LGVPAEAILLEDRSTNTY 80 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHH-cCCCHHHeeecCCCCCHH
Confidence 35666766654 23333333333 26666666662 2233444 56544444556544 4
Q ss_pred HHHHHHHHHHHhCCC
Q psy8371 252 KIVKKLVEKAEKNNV 266 (528)
Q Consensus 252 ~~a~~~~~~a~~~~~ 266 (528)
+.|....+.+++++.
T Consensus 81 ena~~~~~~~~~~~~ 95 (150)
T cd06259 81 ENARFSAELLRERGI 95 (150)
T ss_pred HHHHHHHHHHHhcCC
Confidence 445555556666553
No 73
>KOG3420|consensus
Probab=22.50 E-value=1.4e+02 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=21.8
Q ss_pred cCCeEEEeCCccccc---ccchhHHHHHHHHHHHhhhc
Q psy8371 318 RAKVIVWNGPSGVFE---FENFAKGTKGIMDAVVDVTT 352 (528)
Q Consensus 318 ~a~ti~wnGP~GvfE---~~~F~~GT~~i~~aia~~~~ 352 (528)
..+|.+||=|.|--- +-+|-.-..++++++.++++
T Consensus 114 ~fDtaviNppFGTk~~~aDm~fv~~al~~~~~VySLHK 151 (185)
T KOG3420|consen 114 IFDTAVINPPFGTKKKGADMEFVSAALKVASAVYSLHK 151 (185)
T ss_pred eEeeEEecCCCCcccccccHHHHHHHHHHHHHHHHHhc
Confidence 348999999998643 22344444556666665543
No 74
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=22.36 E-value=53 Score=33.52 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCCC
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRPD 57 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP~ 57 (528)
+.-..++.|.++|+..||+++|+|...
T Consensus 170 ~~~~~v~~lr~~~~D~II~l~H~G~~~ 196 (281)
T cd07409 170 AAQKEADKLKAQGVNKIIALSHSGYEV 196 (281)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCchh
Confidence 344567788788999999999999763
No 75
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.35 E-value=3.1e+02 Score=29.50 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=26.2
Q ss_pred CcEEEEEcCC-ccchHHHHHHHHHHhhceEEEchHHHHHHHH
Q psy8371 194 KPFLAILGGA-KVADKIQLIENLLDKVNEMIIGGGMSYTFLK 234 (528)
Q Consensus 194 rP~vailGGa-KvsdKi~~i~~l~~~vD~iiigG~ma~tFl~ 234 (528)
+|.++|+|+- +=.|--.+++.+...+|.+++.|.-+..+..
T Consensus 347 ~~~i~v~g~~~~~k~~~~~~~~l~~~~~~vi~~g~~~~~l~~ 388 (450)
T PRK14106 347 TPIVLIAGGYDKGSDFDEFAKAFKEKVKKLILLGETAQEIAE 388 (450)
T ss_pred CCeEEEeCCcCCCCCHHHHHHHHHhhCCEEEEEcCCHHHHHH
Confidence 4678888763 3223236677766678998888875555544
No 76
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=22.17 E-value=77 Score=33.15 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCCeEEEEccCC
Q psy8371 34 DTIKYALDKGAKSVVLMSHLG 54 (528)
Q Consensus 34 pTI~~l~~~gak~vil~sHlG 54 (528)
.+++.|.++|+..||++||+|
T Consensus 198 ~~v~~Lr~~gvD~II~LsH~g 218 (313)
T cd08162 198 PSIDALTAQGINKIILLSHLQ 218 (313)
T ss_pred HHHHHHHHCCCCEEEEEeccc
Confidence 467888889999999999996
No 77
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=22.06 E-value=6e+02 Score=24.72 Aligned_cols=116 Identities=16% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCccchHHHHHHHHHH----hhceEEEchHHHHHHHHHHcCCCCCccccCCcchHHHHHHHHHHHhCCCeE
Q psy8371 193 EKPFLAILGGAKVADKIQLIENLLD----KVNEMIIGGGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKL 268 (528)
Q Consensus 193 ~rP~vailGGaKvsdKi~~i~~l~~----~vD~iiigG~ma~tFl~a~~g~~ig~s~~e~~~~~~a~~~~~~a~~~~~~i 268 (528)
..+++.|.||-.++|.+.-+..-.+ .+|.+=+-...-|.++.+ +...++. .... .++....+...+.|
T Consensus 24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~----~~~~~~~-~~~~---~~~~~~~~~g~ipV 95 (203)
T cd04240 24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLA----DLEPRLV-ARTL---AELTDVLERGKIAI 95 (203)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh----ccCCccc-cCCH---HHHHHHHHCCCcEE
Confidence 6789999999999999877664322 377774444444555543 1222222 2222 23344445556678
Q ss_pred EeeeeEEEeccccCCCceeeeeccCCCCCCCcccccChhHHHHHHHHHccC-CeEEEeCCcccccc
Q psy8371 269 HFPVDFITADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELFKEPIARA-KVIVWNGPSGVFEF 333 (528)
Q Consensus 269 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~a-~ti~wnGP~GvfE~ 333 (528)
+.|..+..+. +.++..| ++-.+|+..+-...-+| +.|+..-.-|+|..
T Consensus 96 ~~P~~~~~~~--------------~~~~~~~---~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~ 144 (203)
T cd04240 96 LLPYRLLLDT--------------DPLPHSW---EVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK 144 (203)
T ss_pred EeCchhhccc--------------CCCCccc---ccCHHHHHHHHHHHcCCCEEEEEeCCccccCC
Confidence 8888765421 2345555 66777777754444445 57778888899964
No 78
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.79 E-value=2.1e+02 Score=27.83 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=35.5
Q ss_pred cccCCCEEEEEecCCCCCCC-CcHH-HHHHHHHCCCCeEEEEccCCCCCCC
Q psy8371 11 LNLAGKRVLMRVDFNVPMKE-AALD-TIKYALDKGAKSVVLMSHLGRPDGS 59 (528)
Q Consensus 11 ~~~~gk~VlvRvD~NvP~~~-~~lp-TI~~l~~~gak~vil~sHlGRP~g~ 59 (528)
.+++||.||+==|+ +|. .++. .+++|..+|||.+-+++=+..|...
T Consensus 89 ~di~grdVLiVeDI---iDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r 136 (178)
T COG0634 89 EDIKGRDVLIVEDI---IDSGLTLSKVRDLLKERGAKSVRIATLLDKPERR 136 (178)
T ss_pred cCCCCCeEEEEecc---cccChhHHHHHHHHHhCCCCeEEEEEEeeCcccc
Confidence 48999999998776 442 4444 4457888999999999999888753
No 79
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=21.75 E-value=2.4e+02 Score=29.80 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHhcC-----CCeeEcCCCCChHHHHHhcCC----CCCcEEEEecccCcccccc
Q psy8371 65 SLKPVAEELKTLLK-----KDITFLDDCVGPKVEEACADP----PAGSIILLENLRFYVEEEG 118 (528)
Q Consensus 65 Sl~~~a~~L~~~l~-----~~V~f~~d~~g~~~~~~i~~l----~~g~illLEN~Rf~~~E~~ 118 (528)
|+....+...+.+. .+|..--+. =+++.++++.+ ..-|++||+|.|+-++|..
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~ 246 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGD 246 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccC
Confidence 56677777777433 334443333 24556655411 2349999999999988864
No 80
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=21.54 E-value=2.2e+02 Score=30.21 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=46.5
Q ss_pred ccCCCEEEEEecCCCCCCC--CcHHHHHHHHHCCCCeE-EEEccCCCC--CCC--CCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE--AALDTIKYALDKGAKSV-VLMSHLGRP--DGS--KNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~--~~lpTI~~l~~~gak~v-il~sHlGRP--~g~--~~~~~Sl~~~a~~L~~~ 76 (528)
+++|+.|++---++.| ++ +-+=.+.-|.+.||++| +++|.+|-- ..+ .-+..|.+-+|+.|+.+
T Consensus 63 ~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~ 133 (326)
T PLN02297 63 GIRGQHVAFLASFSSP-AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNI 133 (326)
T ss_pred CcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcc
Confidence 6799999998888888 54 66666777788899755 678887632 111 12457888899998874
No 81
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.31 E-value=2.9e+02 Score=29.74 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCc-cchHHHHHHHHHHhhceEEEchHHHHHHHH
Q psy8371 193 EKPFLAILGGAK-VADKIQLIENLLDKVNEMIIGGGMSYTFLK 234 (528)
Q Consensus 193 ~rP~vailGGaK-vsdKi~~i~~l~~~vD~iiigG~ma~tFl~ 234 (528)
.++.++|+||.. -.|-=.+++.+. .+|.+++.|.=+..+..
T Consensus 342 ~~~ii~I~g~~~~~~~~~~l~~~l~-~~~~v~~~G~~~~~l~~ 383 (447)
T PRK02472 342 NQPVVLLAGGLDRGNEFDELVPYLK-NVKAMVVFGETAEKLAR 383 (447)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHh-ccCEEEEECCCHHHHHH
Confidence 467899999864 233334555554 49999888875555543
No 82
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.23 E-value=2.3e+02 Score=29.76 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHCCCCeEEEEccCCCC------------C--C--CCCCCCChHHHHHHHHHhcCCCeeEcCCCCChHHHH
Q psy8371 31 AALDTIKYALDKGAKSVVLMSHLGRP------------D--G--SKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEE 94 (528)
Q Consensus 31 ~~lpTI~~l~~~gak~vil~sHlGRP------------~--g--~~~~~~Sl~~~a~~L~~~l~~~V~f~~d~~g~~~~~ 94 (528)
.-++.++.++++|-..|++++|+|.= . + +...-=.+.-.-....+..|..+ ++. .+...+.
T Consensus 110 ~g~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~~~~yrp~~np~ld~~i~~~R~r~~~~~--~~~-~~~~ir~ 186 (308)
T COG1560 110 EGLEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLITRGRERFGGRL--LPR-KGEGIRQ 186 (308)
T ss_pred cCHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHHhcCCcc--cCC-CchhHHH
Confidence 55788999999987778999999821 1 0 00011134444455555555333 222 2377899
Q ss_pred HhcCCCCCcEEE
Q psy8371 95 ACADPPAGSIIL 106 (528)
Q Consensus 95 ~i~~l~~g~ill 106 (528)
.++.|+.|+++.
T Consensus 187 li~~Lk~G~~v~ 198 (308)
T COG1560 187 LIKALKQGEAVG 198 (308)
T ss_pred HHHHHhcCCeEE
Confidence 999999999883
No 83
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=21.08 E-value=2e+02 Score=26.66 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=26.4
Q ss_pred ccccCCCEEEEEecCCCCCCC-------CcHHHHHHHHHCCCCeEEEE
Q psy8371 10 LLNLAGKRVLMRVDFNVPMKE-------AALDTIKYALDKGAKSVVLM 50 (528)
Q Consensus 10 d~~~~gk~VlvRvD~NvP~~~-------~~lpTI~~l~~~gak~vil~ 50 (528)
++|++||-||++-.--.+... ..---++.+.++||+-||+.
T Consensus 45 ~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 45 GLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred CCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 569999999999643211111 11135789999999955544
No 84
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=21.04 E-value=2.4e+02 Score=26.75 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=29.1
Q ss_pred cccccccCCCEEEEEecCCCCC---------CC-------CcHHHHHHHHHCCCCeEEEEccCC
Q psy8371 7 SVDLLNLAGKRVLMRVDFNVPM---------KE-------AALDTIKYALDKGAKSVVLMSHLG 54 (528)
Q Consensus 7 ti~d~~~~gk~VlvRvD~NvP~---------~~-------~~lpTI~~l~~~gak~vil~sHlG 54 (528)
-..++|++||.|++-.+ -|- .. +----.+.+.++||+ =||+-|.-
T Consensus 42 Dy~g~DVkGKiVvvl~~--~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~-gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVN--DPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAA-GALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcC--CCCcccccccccCcccccccccHHHHHHHHHHCCCe-EEEEEeCC
Confidence 34567999999987643 341 11 111257789999998 56666653
No 85
>PRK10799 metal-binding protein; Provisional
Probab=20.85 E-value=84 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHhcCCCeeEcCC
Q psy8371 61 NLKYSLKPVAEELKTLLKKDITFLDD 86 (528)
Q Consensus 61 ~~~~Sl~~~a~~L~~~l~~~V~f~~d 86 (528)
.+.+-++.++++|++.++.+|.|++.
T Consensus 218 sE~~~~~~la~~L~~~~~~~~~~i~~ 243 (247)
T PRK10799 218 TERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 45566889999999999999999865
No 86
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.26 E-value=3.1e+02 Score=28.95 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=45.9
Q ss_pred ccCCCEEEEEecCCCCCCC---CcHHHHHHHHHCCCCeE-EEEccCCCCCC----CCCCCCChHHHHHHHHHh
Q psy8371 12 NLAGKRVLMRVDFNVPMKE---AALDTIKYALDKGAKSV-VLMSHLGRPDG----SKNLKYSLKPVAEELKTL 76 (528)
Q Consensus 12 ~~~gk~VlvRvD~NvP~~~---~~lpTI~~l~~~gak~v-il~sHlGRP~g----~~~~~~Sl~~~a~~L~~~ 76 (528)
+++|+.|++--.+.-|.++ +-+=.+.-|.+.||++| +++|.++--.. +.-+.+|.+-+|+.|+..
T Consensus 53 ~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~ 125 (323)
T PRK02458 53 SVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKA 125 (323)
T ss_pred CcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhc
Confidence 5799999998888777665 55556667778899755 67777652211 122577999999999875
Done!