RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8371
(528 letters)
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 662 bits (1709), Expect = 0.0
Identities = 276/407 (67%), Positives = 322/407 (79%), Gaps = 12/407 (2%)
Query: 1 MALNKLSVD--LLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVV 48
M NKL +D L GKRVL+RVDFNVP+KE A L TIKY L++GAKSVV
Sbjct: 1 MLSNKLGIDDVDDQLKGKRVLIRVDFNVPIKEGVIKDATRIKATLPTIKYLLEQGAKSVV 60
Query: 49 LMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLE 108
LMSHLGRPDG + KYSLKPV +L+ LL K +TFL+DCVGP+VEEACA+ GS+ILLE
Sbjct: 61 LMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLE 120
Query: 109 NLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEG 168
NLRF++EEEGKGV+A G KVKA E+VKKFR+SL KLGDIYVNDAFGTAHRAHSSM+G
Sbjct: 121 NLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAHRAHSSMVGVD 180
Query: 169 FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGM 228
+ +GFL+KKELDYFSKAL+NP++PFLAILGGAKVADKIQLI+NLLDKV+EMIIGGGM
Sbjct: 181 LPVKVAGFLMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGM 240
Query: 229 SYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGE 288
++TF K L M IG SL+D EGAKIVK+++EKA++ NVK+H PVDF+ ADKF +A T
Sbjct: 241 AFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKV 300
Query: 289 ATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVV 348
T + G+PDGWMGLD GPKS E F E I RAK IVWNGP GVFE NFAKG+ ++DAVV
Sbjct: 301 VTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVV 360
Query: 349 DVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
T KGAITI+GGGDTA+ K +KVSHVSTGGGASLELLEGK
Sbjct: 361 KATEKGAITIVGGGDTASLVEKTGAANKVSHVSTGGGASLELLEGKE 407
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 591 bits (1526), Expect = 0.0
Identities = 235/398 (59%), Positives = 288/398 (72%), Gaps = 22/398 (5%)
Query: 8 VDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRPD 57
+D L+L GKRVL+RVDFNVP+ + AAL TIKY L++GAK VVL+SHLGRP
Sbjct: 1 IDDLDLKGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEQGAK-VVLLSHLGRPK 59
Query: 58 GSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEE 117
G N KYSL PVA+ L LL + +TF +DCVGP+ EEA G ++LLEN+RFY EEE
Sbjct: 60 GEPNEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEE 119
Query: 118 GKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEG-FEQRASGF 176
GK E ++F + L LGD+YVNDAFGTAHRAH+SM+G A+GF
Sbjct: 120 GKR--------DDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMVGIALLLPSAAGF 171
Query: 177 LLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKEL 236
L++KEL Y +KAL+NPE+PF+AILGGAKV+DKIQ+IENLLDKV+ +IIGGGM++TFLK
Sbjct: 172 LMEKELKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQ 231
Query: 237 KGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVP 296
GM+IG SL++ +G ++ K L+EKA+ VK+ PVD + ADKF DA T T + G+P
Sbjct: 232 -GMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDD-GIP 289
Query: 297 DGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAI 356
DGWMGLDIGPK+ ELF E I +AK IVWNGP GVFEF FAKGTK I DA+ T GA
Sbjct: 290 DGWMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGAF 349
Query: 357 TIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
+IIGGGDTA A K+ DK+SHVSTGGGASLELLEGK
Sbjct: 350 SIIGGGDTAAAAEKFGLADKISHVSTGGGASLELLEGK 387
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 575 bits (1484), Expect = 0.0
Identities = 225/400 (56%), Positives = 285/400 (71%), Gaps = 29/400 (7%)
Query: 7 SVDLLNLAGKRVLMRVDFNVPMK----------EAALDTIKYALDKGAKSVVLMSHLGRP 56
++D L+L GKRVL+RVDFNVP+ AAL TIKY L+KGAK VVL+SHLGRP
Sbjct: 1 TLDDLDLKGKRVLVRVDFNVPLDDGKITDDTRIRAALPTIKYLLEKGAK-VVLLSHLGRP 59
Query: 57 DGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEE 116
G KYSLKPVA+ L LL K + F+DDC+GP+ E A A G ++LLEN+RFY EE
Sbjct: 60 KGGPKDKYSLKPVAKRLSELLGKPVKFVDDCIGPEAEAAIAALKPGEVLLLENVRFYAEE 119
Query: 117 EGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG--EGFEQRAS 174
EGK ++ +F + L LGDIYVNDAFGTAHRAH+S +G + A+
Sbjct: 120 EGK-----------EEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTVGVAKVLPPSAA 168
Query: 175 GFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLK 234
GFL++KEL+ SKAL+NPE+PF+AILGGAKV+DKI++IENLLDKV++++IGGGM+ TFLK
Sbjct: 169 GFLMEKELEALSKALENPERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLK 228
Query: 235 ELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESG 294
+G NIG SL + + + K+L+EKA++ VK+ PVD + AD+F+ DA+T V+
Sbjct: 229 -AQGYNIGKSLVEEDLIETAKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDE- 286
Query: 295 VPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKG 354
+PDGWMGLDIGPK+ ELF E I AK +VWNGP GVFEFENFAKGTK + A+ + G
Sbjct: 287 IPDGWMGLDIGPKTIELFAEVIKDAKTVVWNGPMGVFEFENFAKGTKAVAKAIAES---G 343
Query: 355 AITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
A +I+GGGDTA K DK SH+STGGGASLELLEGK
Sbjct: 344 AFSIVGGGDTAAAVEKAGLADKFSHISTGGGASLELLEGK 383
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 498 bits (1285), Expect = e-175
Identities = 213/404 (52%), Positives = 275/404 (68%), Gaps = 39/404 (9%)
Query: 5 KLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLG 54
K ++D L+L GKRVL+RVDFNVP+K+ AAL TIKY L+KGAK V+L+SHLG
Sbjct: 1 KKTLDDLDLKGKRVLVRVDFNVPVKDGKITDDTRIRAALPTIKYLLEKGAK-VILLSHLG 59
Query: 55 RPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYV 114
RP G ++ ++SL PVA+ L LL K++ F+DDC+G + EA A G ++LLEN+RF
Sbjct: 60 RPKG-EDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNK 118
Query: 115 EEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQR-- 172
EE K E KK L LGD++VNDAFGTAHRAH+S G +
Sbjct: 119 GEE-----------KNDPELAKK----LASLGDVFVNDAFGTAHRAHAST--VGIAKFLK 161
Query: 173 --ASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSY 230
A+GFL++KEL+ KAL+NPE+PF+AILGGAKV+DKI ++ENLL+KV+++IIGGGM+
Sbjct: 162 PAAAGFLMEKELEALGKALENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMAN 221
Query: 231 TFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEAT 290
TFLK +G N+G SL + + K+L+EKA++ VK+ PVD + A +F DA+ +
Sbjct: 222 TFLKA-QGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEF-SDAEATVVS 279
Query: 291 VESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDV 350
V+ +PD WM LDIGPK+ ELF E I AK IVWNGP GVFEFENFAKGTK + A+ +
Sbjct: 280 VDE-IPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAES 338
Query: 351 TTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
T A +IIGGGDTA K DK SH+STGGGASLE LEGK
Sbjct: 339 T---AFSIIGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGK 379
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 477 bits (1231), Expect = e-167
Identities = 214/405 (52%), Positives = 275/405 (67%), Gaps = 37/405 (9%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSH 52
+ K ++ L+LAGKRVL+RVDFNVP+ + AAL TIKY L+KGAK VVL+SH
Sbjct: 2 MMKKTILDLDLAGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEKGAK-VVLLSH 60
Query: 53 LGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRF 112
LGRP + K SL+PVA+ L LL K++ F+DDCVGP+ +A A+ G ++LLEN+RF
Sbjct: 61 LGRPKEYSD-KTSLEPVAKRLSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVRF 119
Query: 113 YVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQ- 171
Y EEE K E + + L LGD++VNDAFGTAHRAH+S GF +
Sbjct: 120 YSEEE-----------KNDEEARTELVKKLASLGDVFVNDAFGTAHRAHAST--VGFAKF 166
Query: 172 --RASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMS 229
A+GFL++KELD KAL+NPE+PF+AILGGAKV+DKI +IENLL K +++IIGGGM+
Sbjct: 167 LPSAAGFLMEKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMA 226
Query: 230 YTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEA 289
TFLK +G ++G SL + + K+L+EKA+ K+ PVD + A +F+ DA A
Sbjct: 227 NTFLK-AQGYDVGKSLVEFDLIDGAKELLEKAKD---KIVLPVDVVVAKEFSRDA---PA 279
Query: 290 TVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVD 349
TV+ +PD M LDIGPK+ ELF E I AK IVWNGP GVFEFENFAKGT+ + A+
Sbjct: 280 TVKLEIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAK 339
Query: 350 VTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
+ GA +IIGGGDTA K DK+SH+STGGGASLE LEGK
Sbjct: 340 SS--GAFSIIGGGDTAAAIDKLGLADKISHISTGGGASLEFLEGK 382
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 446 bits (1150), Expect = e-151
Identities = 201/404 (49%), Positives = 270/404 (66%), Gaps = 33/404 (8%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVVLMS 51
+NK ++ +++ GKRV++RVDFNVP+ E AAL TIKY LD GAK V+L+S
Sbjct: 1 MNKKTIRDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAK-VILVS 59
Query: 52 HLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLR 111
HLGRP G + K+S+ PVA+ L LL K++ F D +G ++A A G ++LLEN+R
Sbjct: 60 HLGRPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVR 119
Query: 112 FYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG-EGFE 170
F+ EE F + L L DIYVNDAFGTAHRAH+S G +
Sbjct: 120 FHKEETKNDPE---------------FAKELASLADIYVNDAFGTAHRAHASTAGVAEYL 164
Query: 171 QRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSY 230
+GFL++KE+++ KAL NP++PF+AILGGAKV+DKI +IENLL+KV++++IGGGM+Y
Sbjct: 165 PAVAGFLMEKEIEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAY 224
Query: 231 TFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEAT 290
TFLK KG +G SL + + + K+L+ KAE+ VKL PVD + A +F DA+ +
Sbjct: 225 TFLKA-KGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEH-KVV 282
Query: 291 VESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDV 350
+P+ WMGLDIGP++ ELF + IA AK IVWNGP GVFEF+NFA+GT+ + +AV +
Sbjct: 283 PSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAE- 341
Query: 351 TTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
GAITIIGGGD+A K DK+SH+STGGGASLE LEGK
Sbjct: 342 --SGAITIIGGGDSAAAVEKLGFADKMSHISTGGGASLEFLEGK 383
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 351 bits (902), Expect = e-117
Identities = 188/396 (47%), Positives = 254/396 (64%), Gaps = 32/396 (8%)
Query: 12 NLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVVLMSHLGRPDGSK 60
+L GKRV +RVD NVP+ + AA+ TIKY + GA+ V+L SHLGRP G
Sbjct: 14 DLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGAR-VILCSHLGRPKGVT 72
Query: 61 NLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKG 120
KYSLKP+ L LL ++ +DC+G +VE+ A+ P G ++LLEN+RFY EEE
Sbjct: 73 P-KYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEE--- 128
Query: 121 VNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG--EGFEQRASGFLL 178
++ +F + L L D+YVNDAFGTAHRAH+S G + + +GFL+
Sbjct: 129 ------------KNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLM 176
Query: 179 KKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKELKG 238
+KELDY A+ NP+KPF AI+GG+KV+ KI +IE+LL+KV+ +++GGGM +TF K +G
Sbjct: 177 QKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKA-QG 235
Query: 239 MNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDG 298
++G SL + + + L+EKA+ V L P D + ADKFA DA + + S +PDG
Sbjct: 236 YSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANS-KVVPASAIPDG 294
Query: 299 WMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITI 358
WMGLDIGP S + F E + K I+WNGP GVFEFE FA GT+ I + +++ KG TI
Sbjct: 295 WMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTI 354
Query: 359 IGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
IGGGD+ K DK+SH+STGGGASLELLEGK
Sbjct: 355 IGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGK 390
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 346 bits (889), Expect = e-114
Identities = 181/396 (45%), Positives = 250/396 (63%), Gaps = 32/396 (8%)
Query: 12 NLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVVLMSHLGRPDGSK 60
+L GK+V +R D NVP+ + AA+ TIKY + GAK V+L SHLGRP G
Sbjct: 89 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAK-VILSSHLGRPKGVT 147
Query: 61 NLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKG 120
K+SL P+ L LL + DDC+GP+VE+ A P G ++LLEN+RFY EEE
Sbjct: 148 P-KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE--- 203
Query: 121 VNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG--EGFEQRASGFLL 178
++ +F + L L D+YVNDAFGTAHRAH+S G + + +GFLL
Sbjct: 204 ------------KNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLL 251
Query: 179 KKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKELKG 238
+KELDY A+ NP++PF AI+GG+KV+ KI +IE+LL+K + +++GGGM +TF K +G
Sbjct: 252 QKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKA-QG 310
Query: 239 MNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDG 298
+++G SL + + ++ L+ KA+ V L P D + ADKFA DA + + S +PDG
Sbjct: 311 LSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANS-KIVPASAIPDG 369
Query: 299 WMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITI 358
WMGLDIGP S + F E + + ++WNGP GVFEFE FA GT+ + + +++ KG TI
Sbjct: 370 WMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAELSGKGVTTI 429
Query: 359 IGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
IGGGD+ K D +SH+STGGGASLELLEGK
Sbjct: 430 IGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGK 465
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 56.5 bits (137), Expect = 3e-10
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 402 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSL 461
E G V VHY E + D + R P F LGS +IP ++ +L M+
Sbjct: 3 EKAKKGDTVTVHYTGKLE-DGTVFDSSKDRGK-PFEFTLGSGQVIPGWDEGLLGMKV--- 57
Query: 462 NLSGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLI 500
GEK EL +G G IP A L+FEV L+
Sbjct: 58 ---GEKRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 44.3 bits (105), Expect = 5e-05
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 449
K+ + G G P G V VHY L D +Y R P F LG G+IP +
Sbjct: 106 KVLKAGDGAAPKKGDTVTVHY-----TGTLIDGTVFDSSYDRGQ-PAEFPLG--GVIPGW 157
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 500
+ + M+ G K EL +G G P IP + L+FEV L+
Sbjct: 158 DEGLQGMKVG------GKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELL 202
>gnl|CDD|188476 TIGR03961, rSAM_PTO1314, archaeal radical SAM protein, PTO1314
family. Members of this protein family average about
340 residues in length, with a radical SAM domain in the
N-terminal 200 residues. The taxonomic distribution is
restricted to non-methanogenic archaea, including
Picrophilus torridus (locus PTO1314), Sulfolobus sp.,
Thermoplasma sp., Picrophilus torridus, and
Metallosphaera sedula. The gene neighborhood is not
conserved, and the function of this family is unknown
[Unknown function, Enzymes of unknown specificity].
Length = 332
Score = 35.2 bits (81), Expect = 0.077
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 32/135 (23%)
Query: 159 RAHSSMLGEGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDK 218
R H+S++ +G+LLK + S+ LD F++I G +V DK + I ++
Sbjct: 94 RFHTSLV-------TNGWLLKDRIKSISEYLDY---LFVSIDGIGEVHDKQRGIPGSFER 143
Query: 219 VNEMI------IGGGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPV 272
E I + +S+T E N+ + +VE A K V + V
Sbjct: 144 AVEGIKEAKRYLPVSISFTITNE----NLDQ----------IFDVVELARKLGVSVSIQV 189
Query: 273 --DFITADKFAEDAK 285
D+ TA+K + + K
Sbjct: 190 SYDYSTAEKLSPERK 204
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 206
Score = 34.4 bits (79), Expect = 0.097
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI----PERFQLGSSGLI 446
L+ ++ +G G P V+VHY +L ID T S+ P F + +G+I
Sbjct: 104 LQFRVLTQGEGAIPARTDRVRVHY-----TGKL-IDGTVFDSSVARGEPAEFPV--NGVI 155
Query: 447 PAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 500
P + A+ M GS K + +EL +G G IP + L+FEV L+
Sbjct: 156 PGWIEALTLMPVGS------KWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203
>gnl|CDD|184041 PRK13413, mpi, multiple promoter invertase; Provisional.
Length = 200
Score = 32.4 bits (74), Expect = 0.38
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 53 LGRPDGSKNLKYSLKPVAEELKTLLKKDIT 82
LGRP GS KY L E++K LL K +
Sbjct: 145 LGRPKGSTPKKYKLTGKEEKIKKLLDKGTS 174
>gnl|CDD|181924 PRK09514, zntR, zinc-responsive transcriptional regulator;
Provisional.
Length = 140
Score = 30.7 bits (70), Expect = 0.94
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 116 EEGKG-VNAAGEKVKASAEDVKKFRESLRKLGDIYVNDA-FGTAHRA-HSSMLGEGFEQR 172
+E KG V+ +V+A +++ R SL++L NDA GTAH A + S+L E EQ
Sbjct: 80 QEVKGIVDEKLAEVEAKIAELQHMRRSLQRL-----NDACCGTAHSAVYCSIL-EALEQG 133
Query: 173 ASGFLLK 179
ASG
Sbjct: 134 ASGVKSG 140
>gnl|CDD|130546 TIGR01481, ccpA, catabolite control protein A. Catabolite control
protein A is a LacI family global transcriptional
regulator found in Gram-positive bacteria. CcpA is
involved in repressing carbohydrate utilization genes
[ex: alpha-amylase (amyE), acetyl-coenzyme A synthase
(acsA)] and in activating genes involved in transporting
excess carbon from the cell [ex: acetate kinase (ackA),
alpha-acetolactate synthase (alsS)]. Additionally,
disruption of CcpA in Bacillus megaterium,
Staphylococcus xylosus, Lactobacillus casei and
Lactocacillus pentosus also decreases growth rate, which
suggests CcpA is involved in the regulation of other
metabolic pathways [Regulatory functions, DNA
interactions].
Length = 329
Score = 30.9 bits (70), Expect = 1.6
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 25 NVPMKEAALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKK-DITF 83
N+ K+A + + + KG KS+ + G + + + E K L K I F
Sbjct: 157 NIDYKQATKEAVGELIAKGHKSIAFVG------GPLSDSINGEDRLEGYKEALNKAGIQF 210
Query: 84 LDDCV 88
+D V
Sbjct: 211 GEDLV 215
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 30.5 bits (69), Expect = 1.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 84 LDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDV 135
L D +G ++ A D I+L + + ++E G GV AGE A+AE V
Sbjct: 14 LQDALGDQLCVALDDATVVEIMLNPDGKLFIERLGHGVAPAGEMSAAAAEVV 65
>gnl|CDD|218067 pfam04402, SIMPL, Protein of unknown function (DUF541). Members of
this family have so far been found in bacteria and mouse
SwissProt or TrEMBL entries. However possible family
members have also been identified in translated rat
(Genbank:AW144450) and human (Genbank:AI478629) ESTs. A
mouse family member has been named SIMPL (signalling
molecule that associates with mouse pelle-like kinase).
SIMPL appears to facilitate and/or regulate complex
formation between IRAK/mPLK (IL-1 receptor-associated
kinase) and IKK (inhibitor of kappa-B kinase) containing
complexes, and thus regulate NF-kappa-B activity.
Separate experiments demonstrate that a mouse family
member (named LaXp180) binds the Listeria monocytogenes
surface protein ActA, which is a virulence factor that
induces actin polymerisation. It may also bind stathmin,
a protein involved in signal transduction and in the
regulation of microtubule dynamics. In bacteria its
function is unknown, but it is thought to be located in
the periplasm or outer membrane.
Length = 210
Score = 30.0 bits (68), Expect = 2.2
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 110 LRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLG 146
+ V EGK A E+V E + +L+K G
Sbjct: 18 VSLGVSTEGKDAAEALEEV---NERMNAVLAALKKAG 51
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 30.4 bits (69), Expect = 2.7
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 177 LLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFL--- 233
LLK EL+ + L + F+A G A + QL +D++ + + + L
Sbjct: 214 LLKNELEGLQEKLQRALELFMAEDGLAPRLENFQLDLQNIDELIQESL-AQADWNELRKA 272
Query: 234 ----KELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKL 268
K G D + + KL E+A+K KL
Sbjct: 273 VAAFKFKNLKAAKGDEEDADLLEEADKLREEAKKQLEKL 311
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 30.2 bits (68), Expect = 3.3
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 10 LLNLAGKRVLMRVDFNVPMKEAALDTIKYALDKGAKS 46
L + A K+ + N P E LD ++ L +G +
Sbjct: 224 LFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQK 260
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 30.0 bits (68), Expect = 3.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 180 KELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSY 230
++ F ++L+ P K L + GA V I + LL+K ++II GG S+
Sbjct: 52 YSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK-GDIIIDGGNSH 101
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 29.2 bits (66), Expect = 5.1
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 130 ASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKELDYFSKAL 189
S+E + RE LRK A + + L E+ ++ L+ S
Sbjct: 74 PSSELTAELREELRKY-----RGYLEQASES-DAQLRSKLEE------HEENLELLSGPE 121
Query: 190 DNPEK--PFLAILGGAKVADKIQLIENLLDKVNEMI 223
+ E P + +V+++I + LL+K+NE+
Sbjct: 122 EELEALLPSSSPSKTPEVSEQISRLRELLNKLNELK 157
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 29.5 bits (66), Expect = 5.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 338 KGTKGIMDAVVDVTTKGAITIIGGGDTATCAAK 370
+G +G++ V G +TIIGGG T AAK
Sbjct: 152 QGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAK 184
>gnl|CDD|217078 pfam02515, CoA_transf_3, CoA-transferase family III.
CoA-transferases are found in organisms from all lines
of descent. Most of these enzymes belong to two
well-known enzyme families, but recent work on unusual
biochemical pathways of anaerobic bacteria has revealed
the existence of a third family of CoA-transferases. The
members of this enzyme family differ in sequence and
reaction mechanism from CoA-transferases of the other
families. Currently known enzymes of the new family are
a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA:
(R)-benzylsuccinate CoA-transferase, an
(E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase,
and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase.
In addition, a large number of proteins of unknown or
differently annotated function from Bacteria, Archaea
and Eukarya apparently belong to this enzyme family.
Properties and reaction mechanisms of the
CoA-transferases of family III are described and
compared to those of the previously known
CoA-transferases.
Length = 179
Score = 28.7 bits (65), Expect = 6.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 300 MGLDIG-PKSRELFKEPIARAKVIVWNGPSGVFE 332
+ LD+ P+ R L + +A A V++ N GV E
Sbjct: 1 VALDLKSPEGRALLRRLVADADVLIENFRPGVLE 34
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases. Nucleoside
hydrolases cleave the N-glycosidic bond in nucleosides
generating ribose and the respective base. These enzymes
vary in their substrate specificity. This group
contains eukaryotic, bacterial and archeal proteins
similar to the inosine-uridine preferring nucleoside
hydrolase from Crithidia fasciculata, the
xanthosine-inosine-uridine-adenosine-preferring
nucleoside hydrolase RihC from Salmonella enterica
serovar Typhimurium, the purine-specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase from Trypanosoma vivax and,
pyrimidine-specific uridine-cytidine preferring
nucleoside hydrolases such as URH1 from Saccharomyces
cerevisiae, RihA and RihB from Escherichia coli.
Nucleoside hydrolases are of interest as a target for
antiprotozoan drugs as, no nucleoside hydrolase activity
or genes encoding these enzymes have been detected in
humans and, parasitic protozoans lack de novo purine
synthesis relying on nucleoside hydrolase to scavenge
purine and/or pyrimidines from the environment. .
Length = 295
Score = 28.8 bits (65), Expect = 6.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 191 NPEKPFLAILGG-AKVADKIQLIENLLDKVNEMII-GGGMSY----TFLKELKGMNIGGS 244
P++ + LG +A L ++ D+V E++I GG T + E N G
Sbjct: 110 YPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPVAE---ANFYG- 165
Query: 245 LYDPEGAKIV 254
DPE A IV
Sbjct: 166 --DPEAANIV 173
>gnl|CDD|221497 pfam12262, Lipase_bact_N, Bacterial virulence factor lipase
N-terminal. This domain family is found in bacteria,
and is typically between 258 and 271 amino acids in
length. There are two conserved sequence motifs: DGT and
DGWST. This family is the N-terminal region of bacterial
virulence factor lipase. The N-terminal region contains
a potential signalling sequence.
Length = 269
Score = 28.6 bits (64), Expect = 6.8
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 440 LGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGAL-----GCPPRIPAKADLL 494
GS+ +P Y ++ G+L L ++ E+ G P + K L
Sbjct: 50 KGSNADVPTPSYLLMDASDGTLELPSGGDTDLSNPEVAMGQTDGWSTTQPIVLNFKGAGL 109
Query: 495 FE------VHLINFSIDPQVVRSSADIESLL 519
E V+LI + DP + +S E LL
Sbjct: 110 DESTLASGVYLIKLTGDPTLDGASTPPELLL 140
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 28.8 bits (65), Expect = 6.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 337 AKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLE 392
G KG++ V + ++GGG T AAK ++ G GA + +L+
Sbjct: 152 TNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAK---------IAIGLGADVTILD 198
>gnl|CDD|237723 PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.
Length = 568
Score = 29.0 bits (66), Expect = 7.4
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 119 KGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDA-------FGTAHRAHSSMLGEGFEQ 171
+G AA +A+ E L GD + + A +GTA RA LG+ E
Sbjct: 400 RGSKAALAAARAAVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALGDKDEP 459
Query: 172 RASGFLLKKELDYFSKALDNPEKPFLAI--LGGAKVADK 208
A+ F A+D AI LGGA+V DK
Sbjct: 460 TAADF-----AAAVRAAVD-------AIQELGGAQVGDK 486
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.392
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,388,039
Number of extensions: 2784189
Number of successful extensions: 3061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3002
Number of HSP's successfully gapped: 50
Length of query: 528
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 427
Effective length of database: 6,457,848
Effective search space: 2757501096
Effective search space used: 2757501096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)