RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8371
(528 letters)
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 689 bits (1781), Expect = 0.0
Identities = 238/407 (58%), Positives = 305/407 (74%), Gaps = 12/407 (2%)
Query: 1 MAL-NKLSV-DLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVV 48
L NKLS+ DL ++ K+VL+RVDFNVP++ A L TI + +GA ++
Sbjct: 2 HHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKII 61
Query: 49 LMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLE 108
L+SH GRPDG +N KY+LKPVAE LK LL +++ FL+DCVG +VE+ S+ILLE
Sbjct: 62 LISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLE 121
Query: 109 NLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEG 168
NLRF++EEEGKGV+A G KVKA+ EDV+KF+ L KL D+++NDAFGTAHRAHSSM+G
Sbjct: 122 NLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVK 181
Query: 169 FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGM 228
+ASGFL+KKEL+YFSKAL+NP++P LAILGGAKV+DKIQLI+NLLDKV+ MIIGGGM
Sbjct: 182 LNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGM 241
Query: 229 SYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGE 288
+YTF K L M IG SL+D G+KIV +++EKA+ NV++ PVDF AD F +A T
Sbjct: 242 AYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKF 301
Query: 289 ATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVV 348
T E G+PD WMGLD GPKS E +K+ I +K ++WNGP GVFE NFAKG+ ++ VV
Sbjct: 302 VTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVV 361
Query: 349 DVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
+VT KGAITI+GGGDTA+ + N ++++SHVSTGGGASLELLEGK
Sbjct: 362 EVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKE 408
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 683 bits (1766), Expect = 0.0
Identities = 284/404 (70%), Positives = 333/404 (82%), Gaps = 11/404 (2%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSH 52
NKL++D L++ GKRV+MRVDFNVPMK AA+ +IK+ LD GAKSVVLMSH
Sbjct: 3 SNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSH 62
Query: 53 LGRPDGSKN-LKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLR 111
LGRPDG KYSL+PVA ELK+LL KD+ FL DCVGP+VE+ACA+P AGS+ILLENLR
Sbjct: 63 LGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLR 122
Query: 112 FYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQ 171
F+VEEEGKG +A+G KVKA ++ FR SL KLGD+YVNDAFGTAHRAHSSM+G Q
Sbjct: 123 FHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQ 182
Query: 172 RASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYT 231
+A GFL+KKEL+YF+KAL++PE+PFLAILGGAKVADKIQLI N+LDKVNEMIIGGGM++T
Sbjct: 183 KAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFT 242
Query: 232 FLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATV 291
FLK L M IG SL+D EGAKIVK L+ KAEKN VK+ PVDF+TADKF E+AKTG+ATV
Sbjct: 243 FLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATV 302
Query: 292 ESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVT 351
SG+P GWMGLD GP+S + + E + RAK IVWNGP GVFE+E FA+GTK +MD VV T
Sbjct: 303 ASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKAT 362
Query: 352 TKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
++G ITIIGGGDTATC AKWNTEDKVSHVSTGGGASLELLEGK+
Sbjct: 363 SRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKV 406
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 678 bits (1752), Expect = 0.0
Identities = 246/403 (61%), Positives = 299/403 (74%), Gaps = 11/403 (2%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSH 52
+KLSV L+L KRV +RVDFNVP+ AAL TIKY L+ + VVL SH
Sbjct: 3 SSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASH 62
Query: 53 LGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRF 112
LG+P+G +N KYSL PVA+EL++LL KD+TFL+DCVGP+VE A GS+ILLENLR+
Sbjct: 63 LGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRY 122
Query: 113 YVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQR 172
++EEEG G+KVKAS EDV+KFR L L D+Y+NDAFGTAHRAHSSM+G QR
Sbjct: 123 HIEEEGSR-KVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQR 181
Query: 173 ASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTF 232
A+GFLL+KEL YF KAL+NP +PFLAILGGAKVADKIQLI+NLLDKV+ +IIGGGM++TF
Sbjct: 182 AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTF 241
Query: 233 LKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVE 292
K L+ IG S++D GA+IV KL+EKA+ V++ PVDFI AD F+ DA T T +
Sbjct: 242 KKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDK 301
Query: 293 SGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTT 352
G+P GW GLD GP+SR+LF +A+AK IVWNGP GVFEFE FA GTK ++D VV +
Sbjct: 302 EGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA 361
Query: 353 KGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
G IIGGGDTAT A K+ DK+SHVSTGGGASLELLEGK
Sbjct: 362 AGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKE 404
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 630 bits (1627), Expect = 0.0
Identities = 189/402 (47%), Positives = 266/402 (66%), Gaps = 28/402 (6%)
Query: 5 KLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLG 54
K+++ ++L GKRV+MRVDFNVP+K+ AAL TIKYAL++GAK V+L+SHLG
Sbjct: 2 KMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAK-VILLSHLG 60
Query: 55 RPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYV 114
RP G + ++SL PVA+ L LL K++ F+ VG +V++A + G ++LLEN RF+
Sbjct: 61 RPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHP 120
Query: 115 EEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG-EGFEQRA 173
E K E + L DI+VNDAFGTAHRAH+S +G F
Sbjct: 121 GET-----------KNDPE----LAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIPSV 165
Query: 174 SGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFL 233
+GFL++KE+ + SK NPEKP++ +LGGAKV+DKI +I NL++K + ++IGG M +TFL
Sbjct: 166 AGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFL 225
Query: 234 KELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVES 293
K G +G S + + + K+LVEKA++ V++ PVD + A K + ++
Sbjct: 226 KA-LGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDD 284
Query: 294 GVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTK 353
G+P+GWMGLDIGP++ ELFK+ ++ AK +VWNGP GVFE ++FA+GTK + A+ +T K
Sbjct: 285 GIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEK 344
Query: 354 GAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
GAIT++GGGD+A K+ EDK SHVSTGGGASLE LEGK
Sbjct: 345 GAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKE 386
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 609 bits (1572), Expect = 0.0
Identities = 171/420 (40%), Positives = 248/420 (59%), Gaps = 45/420 (10%)
Query: 5 KLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLG 54
K S++ +L GK+VL+RVDFNVP+K +AL T+K L +G VLMSHLG
Sbjct: 2 KKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGS-CVLMSHLG 60
Query: 55 RPDGSK----------------NLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACAD 98
RP G K +LKPVA+ L LL + +TF DC+ + +
Sbjct: 61 RPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AADVVSK 118
Query: 99 PPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAH 158
G ++LLEN+RFY EE K A+D + + L GD+Y++DAFGTAH
Sbjct: 119 MSPGDVVLLENVRFYKEEGSK-----------KAKDREAMAKILASYGDVYISDAFGTAH 167
Query: 159 RAHSSMLG--EGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLL 216
R ++M G + A+G+L++KE+ YF+K L NP +P +AI+GGAKV+DKIQL++N+L
Sbjct: 168 RDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNML 227
Query: 217 DKVNEMIIGGGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFIT 276
+++ ++IGG M+YTFLK +G +IG S + + + L++KAE V++ P+D +
Sbjct: 228 QRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVC 286
Query: 277 ADKFAEDAKTGEATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENF 336
+F T + +P+G M LDIGPK+ E + + I + K +WNGP GVFE +
Sbjct: 287 HTEFKAVDSP-LITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPY 345
Query: 337 AKGTKGIMDAVVDVTTK-GAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
+KGT I A+ T + G ++IIGGGD+A+ A ++SHVSTGGGASLELLEGK
Sbjct: 346 SKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKT 405
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 601 bits (1553), Expect = 0.0
Identities = 164/411 (39%), Positives = 243/411 (59%), Gaps = 38/411 (9%)
Query: 1 MAL-NKLSVDLLNLAGKRVLMRVDFNVPMKE-----------AALDTIKYALDKGAKSVV 48
A+ + +S+ ++LA K+V +R DFNVP + +A+ TI+Y LD G V+
Sbjct: 2 NAMSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCS-VI 60
Query: 49 LMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLE 108
L SHLGRP + KYSL+PVA+ L LL K+I D +G + + AG I+LLE
Sbjct: 61 LASHLGRPKE-ISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLE 119
Query: 109 NLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG-- 166
NLRF E + + L + +Y+NDAFG HRAHSS+
Sbjct: 120 NLRFEKGETKND---------------ENLAKELASMVQVYINDAFGVCHRAHSSVEAIT 164
Query: 167 --EGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMII 224
+ + +GFLL+KE+D+ S + +P +PF+A++GG+KV+ K+Q + NLL KV+++II
Sbjct: 165 KFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLII 224
Query: 225 GGGMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDA 284
GGGM++TFLK G +IG SL + E + K++ K + VK++ PVD + A ++D
Sbjct: 225 GGGMAFTFLKA-LGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDV 283
Query: 285 KTGEATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIM 344
+ +P+GWMGLDIGP S LFKE I+ A+ I WNGP GVFE + F+KG+ +
Sbjct: 284 PMKFVPAQ-EIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMS 342
Query: 345 DAVVDVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
+ + A +++GGGDTA A+ D+++ +STGGGASLEL+EGK
Sbjct: 343 HYISE---GHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKE 390
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 589 bits (1522), Expect = 0.0
Identities = 176/404 (43%), Positives = 256/404 (63%), Gaps = 31/404 (7%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSH 52
+NK ++ +++ GKRV RVDFNVPM++ AAL TI+Y ++ GAK V+L SH
Sbjct: 1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAK-VILASH 59
Query: 53 LGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRF 112
LGRP G + L VA+ L LL++ + ++ VG +V+ A G ++LLEN+RF
Sbjct: 60 LGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRF 119
Query: 113 YVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG-EGFEQ 171
Y EE + ++ +L D+YVNDAFG AHRAH+S G +
Sbjct: 120 YPGEEKND---------------PELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLP 164
Query: 172 RASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYT 231
+GFL++KEL+ KAL NP++PF AI+GGAKV DKI +I+NLL+KV+ +IIGGG++YT
Sbjct: 165 AVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYT 224
Query: 232 FLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATV 291
F+K G ++G SL + + ++ K +EKA++ V+ + PVD + AD+FA DA T +
Sbjct: 225 FVKA-LGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPI 283
Query: 292 ESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVT 351
+ +P W LDIGPK+REL+++ I +K++VWNGP GVFE + FA GTK I +A+ +
Sbjct: 284 D-AIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEAL 342
Query: 352 TKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
++IGGGD+A K+ DK+ H+STGGGASLE +EGK
Sbjct: 343 --DTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQ 384
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 582 bits (1502), Expect = 0.0
Identities = 212/333 (63%), Positives = 256/333 (76%), Gaps = 1/333 (0%)
Query: 63 KYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVN 122
KYSL PVA+EL++LL KD+TFL+DCVGP+VE A GS+ILLENLR+++EEEG
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSR-K 61
Query: 123 AAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKEL 182
G+KVKAS EDV+KFR L L D+Y+NDAFGTAHRAHSSM+G QRA+GFLL+KEL
Sbjct: 62 VDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKEL 121
Query: 183 DYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKELKGMNIG 242
YF KAL+NP +PFLAILGGAKVADKIQLI+NLLDKV+ +IIGGGM++TF K L+ IG
Sbjct: 122 KYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIG 181
Query: 243 GSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGVPDGWMGL 302
S++D GA+IV KL+EKA+ V++ PVDFI AD F+ DA T T + G+P GW GL
Sbjct: 182 DSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGL 241
Query: 303 DIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGG 362
D GP+SR+LF +A+AK IVWNGP GVFEFE FA GTK ++D VV + G IIGGG
Sbjct: 242 DNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGG 301
Query: 363 DTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
DTAT A K+ DK+SHVSTGGGASLELLEGK
Sbjct: 302 DTATVAKKYGVTDKISHVSTGGGASLELLEGKE 334
Score = 94.6 bits (236), Expect = 5e-21
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 1 MALNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLM 50
+KLSV L+L KRV +RVDFNVP+ AAL TIKY L+ + VVL
Sbjct: 346 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLA 405
Query: 51 SHLGRPDGSKN 61
SHLGRP+G +N
Sbjct: 406 SHLGRPNGERN 416
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 523 bits (1351), Expect = 0.0
Identities = 147/400 (36%), Positives = 226/400 (56%), Gaps = 32/400 (8%)
Query: 7 SVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGRP 56
++ L+ GKRVL+RVD+NVP+++ +L T+++ L GA +VL+SHLGRP
Sbjct: 3 TLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGAS-LVLLSHLGRP 61
Query: 57 DGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEE 116
G + KYSL PV E L+ L + + G ++LLEN+RF E
Sbjct: 62 KG-PDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGE 120
Query: 117 EGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG-EGFEQRASG 175
E + +LG+ +V DAFG+AHRAH+S++G +G
Sbjct: 121 EKND---------------PELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAG 165
Query: 176 FLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKE 235
FL++KE+ S+ L +PE+P+ +LGGAKV+DKI +IE+LL +++ ++IGG M++TFLK
Sbjct: 166 FLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKA 225
Query: 236 LKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGV 295
G +G SL + + + K L+ +AE V+++ P D + A++ +T + +
Sbjct: 226 -LGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARA-I 283
Query: 296 PDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGA 355
P +MGLDIGPK+RE F + A+ + WNGP GVFE F +GT + A+ + GA
Sbjct: 284 PVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALE--GA 341
Query: 356 ITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
T++GGGD+ + +++ HVSTGGGASLE LE
Sbjct: 342 FTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGT 381
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 519 bits (1339), Expect = 0.0
Identities = 121/406 (29%), Positives = 201/406 (49%), Gaps = 34/406 (8%)
Query: 6 LSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSHLGR 55
++ N K V +RVD N PMK+ A L TI+Y ++ GAK VV+ +H G+
Sbjct: 2 FRLEDFNFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAK-VVIGTHQGK 60
Query: 56 PDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVE 115
P + + A L LL + + +++D G E + +G + +LENLRF E
Sbjct: 61 PYSED--YTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAE 118
Query: 116 EEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEG-FEQRAS 174
E + + L K+ D VNDAF TAHR+ S++G +
Sbjct: 119 EVKNK--------PIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIM 170
Query: 175 GFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLL--DKVNEMIIGGGMSYTF 232
GFL++KE++ +A + + P + +LGGAKV D ++++EN+L ++ + ++ GG ++ F
Sbjct: 171 GFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVF 230
Query: 233 LKELKGMNIGGSLYDPEGAKIVKKLVEKA----EKNNVKLHFPVDFITADKFAEDAKTGE 288
KG ++G + K + V+ A ++ + PVDF K
Sbjct: 231 TL-AKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLL 289
Query: 289 ATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVV 348
+ G+ + +DIG ++ E ++E + +A++IV NGP GVFE E FA GT + A+
Sbjct: 290 SENR-GLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIA 348
Query: 349 DVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
D A +++GGG + K+ ++H+STGGGA L G+
Sbjct: 349 D---SPAFSVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGE 390
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 512 bits (1320), Expect = e-180
Identities = 158/407 (38%), Positives = 238/407 (58%), Gaps = 40/407 (9%)
Query: 2 ALNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMS 51
A++ L++ ++L K+VL+RVDFNVP+K+ AA+ TI+Y LD+G V+LMS
Sbjct: 3 AMSFLTLKDVDLKDKKVLVRVDFNVPVKDGKVTSKVRIEAAIPTIQYILDQGGA-VILMS 61
Query: 52 HLGRPD-GSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENL 110
HLGRP G + ++SL+PVA+ L ++ K + F D + D AG I++ EN+
Sbjct: 62 HLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDG------VDVKAGEIVMCENV 115
Query: 111 RFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG--EG 168
RF E+ + + + LGD++V DAF TAHRA +S G +
Sbjct: 116 RFNSGEK---------------KSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGVAKY 160
Query: 169 FEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGM 228
+G LL E+ KAL +P+KP AI+GG+KV+ K+ ++ NLLDKV +I+GGG+
Sbjct: 161 IPVACAGILLTNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGI 220
Query: 229 SYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGE 288
+ TF+K +G ++G SLY+ + +++ KA+ V + PVD A +F+E+A+
Sbjct: 221 ANTFIKA-EGFDVGNSLYEQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAII 279
Query: 289 ATVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVV 348
V V M LDIGP+S+++ E + A I+WNGP GVFEF+NFA+GTK + A+
Sbjct: 280 KKVSD-VVADEMILDIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIA 338
Query: 349 DVTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKI 395
A ++ GGGDT K+ +D+VS++ST GGA LE LEGK
Sbjct: 339 Q---SHAFSVAGGGDTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKK 382
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 496 bits (1280), Expect = e-174
Identities = 148/405 (36%), Positives = 220/405 (54%), Gaps = 45/405 (11%)
Query: 3 LNKLSVDLLNLAGKRVLMRVDFNVPMKE----------AALDTIKYALDKGAKSVVLMSH 52
++ + + L+LAGKRV +R D NVP+K+ A+L TI+ AL +GAK V++ SH
Sbjct: 1 MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAK-VMVTSH 59
Query: 53 LGRP-DGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADPPAGSIILLENLR 111
LGRP +G N ++SL PV LK L + + D + D G +++LEN+R
Sbjct: 60 LGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENVR 113
Query: 112 FYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLG--EGF 169
F E+ K + L D++V DAFGTAHRA +S G +
Sbjct: 114 FNKGEK-----------KDDET----LSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFA 158
Query: 170 EQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMS 229
+ +G LL ELD KAL P +P +AI+GG+KV+ K+ ++++L +++I+GGG++
Sbjct: 159 DVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA 218
Query: 230 YTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEA 289
TF+ +G ++G SLY+ + K+L+ + P D A +F+E A
Sbjct: 219 NTFIAA-QGHDVGKSLYEADLVDEAKRLLTTC-----NIPVPSDVRVATEFSETAPATLK 272
Query: 290 TVESGVPDGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVD 349
+V V LDIG S + E + AK I+WNGP GVFEF NF KGT+ + +A+ D
Sbjct: 273 SVND-VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIAD 331
Query: 350 VTTKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGK 394
A +I GGGDT + DK+S++STGGGA LE +EGK
Sbjct: 332 ---SEAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGK 373
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 80.0 bits (198), Expect = 3e-18
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 376 KVSHVSTGGGASLELLEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIP 435
++ +S G + + +G G+ A V V Y Y E + P D Y RK+ P
Sbjct: 18 RMLDISGDRG-----VLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-P 71
Query: 436 ERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLF 495
+LG + E +LSM++G E + F +G LGCPP IP +LF
Sbjct: 72 RLMKLGEDITLWGMELGLLSMRRG------ELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125
Query: 496 EVHLINF 502
E+ L++F
Sbjct: 126 EIELLDF 132
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 70.7 bits (173), Expect = 2e-14
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG-LIPAFEYA 452
+I ++G G P + +HY + + ++ + T+ + P LG +
Sbjct: 54 QIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEKKELAGLAIG 112
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINF 502
+ SM+ G E++ +EL +G G P +P ADLL+EV +I F
Sbjct: 113 VASMKSG------ERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 72.0 bits (176), Expect = 1e-13
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 394 KIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
+K G G E P++G V VHY N D ++ R P F LG +I A++
Sbjct: 36 IVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVIKAWDIG 93
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 512
+ +M++G E E +G+ G P+IP+ A L FE+ L++F +
Sbjct: 94 VATMKRG------EICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGG 147
Query: 513 ADIES 517
+
Sbjct: 148 IIRRT 152
Score = 53.1 bits (127), Expect = 1e-07
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG---SSGLIP 447
+ ++ NP GA V++H F +G +
Sbjct: 149 IRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFD--------CRDVAFTVGEGEDHDIPI 200
Query: 448 AFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSIDP 506
+ A+ MQ+ E+ + FG G P I A+L++EV L +F
Sbjct: 201 GIDKALEKMQRE------EQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK 254
Query: 507 QVVRSSADIESLLRLIYCLK 526
+ + I K
Sbjct: 255 ESWEMDTKEKLEQAAIVKEK 274
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 66.5 bits (163), Expect = 1e-13
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 396 KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS 455
PV G V VH E + T +++ F LG +I A + ++
Sbjct: 22 PGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCDVIQALDLSVPL 75
Query: 456 MQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503
M G E + A + C+G G P IP A L EV L
Sbjct: 76 MDVG------ETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 1e-13
Identities = 58/352 (16%), Positives = 97/352 (27%), Gaps = 144/352 (40%)
Query: 3 LNKLSVDLLNL-------------AGKRVL-----------MRVDFNV---PMKE----- 30
KL LL L +GK + ++DF + +K
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 31 ---AALDTIKYALDKGAKSVVLMSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDC 87
L + Y +D + R D S N+K + + EL+ LLK
Sbjct: 197 TVLEMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHSIQAELRRLLKS-------- 240
Query: 88 VGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKL-- 145
K E C +++L N++ +A+ F S + L
Sbjct: 241 ---KPYENC-------LLVLLNVQ-------------------NAKAWNAFNLSCKILLT 271
Query: 146 -GDIYVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKELDYFSKALDNPEK---------- 194
V D A H S+ + + + K LD +
Sbjct: 272 TRFKQVTDFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 195 PFLAILGGAKVADKIQLIENLL----DKVNEMIIGGGMSYTFLK--ELKGMNIGGSLYD- 247
P + + D + +N DK+ +I S L+ E + ++D
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYR------KMFDR 377
Query: 248 ----PEGAKI--------------------VKKLVEK--AEKNN----VKLH 269
P A I V KL + EK + +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Score = 49.5 bits (117), Expect = 3e-06
Identities = 75/544 (13%), Positives = 158/544 (29%), Gaps = 180/544 (33%)
Query: 23 DFNVPMKEAALDTIKYAL-DKGAKSVVLMSHLGRPDGSKNLKYSL--KP---VAEELKTL 76
+F+ K+ D K L + +++ G+ L ++L K V + ++ +
Sbjct: 32 NFDC--KDV-QDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 77 LKKDITFLDDCVGPKVEEACADPPAGSIILLENLRFYVEEEGKGVNAAGEKVKAS---AE 133
L+ + FL ++ P R Y+E+ + N K + +
Sbjct: 87 LRINYKFLMS----PIKTEQRQPSM-------MTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 134 DVKKFRESLRKL---GDIYVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKELDYFSKALD 190
K R++L +L ++ + G +LG G
Sbjct: 136 PYLKLRQALLELRPAKNVLI---DG--------VLGSG---------------------- 162
Query: 191 NPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTFLKELKGMNIGGSLYDPEG 250
K ++A ++ L + + + + +N+
Sbjct: 163 ---KTWVA-------------LDVCLSYKVQCKMDFKIFW--------LNLKNCNSPETV 198
Query: 251 AKIVKKLVEKAEKNNVKLHFPVDFITADKF-AEDAKTGEATVESGVPDGWMGLDIGPKSR 309
++++KL+ + + N D + K + + R
Sbjct: 199 LEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQA--------------------ELR 235
Query: 310 ELFKE-PIARAKVI---VWNGPSGVFE-FENFAKGTKGIMDAVVDVTT--KGAITIIGGG 362
L K P ++ V N + + F K I+ +TT K +
Sbjct: 236 RLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCK----IL-----LTTRFKQVTDFLSAA 284
Query: 363 DTATCAAKWNTEDKVSHVSTG--GGASLELLEGKIKEKGFGENP--VLGAHVQVHYMYYA 418
T T + H S LL K + + P VL + + +
Sbjct: 285 TT--------THISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 419 EANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLN-LSGEKSDFFASYELC 477
+ + ++ ++ + SLN L E +++ ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLT---------------TIIESSLNVL--EPAEYRKMFDRL 378
Query: 478 --FGALGCPP--RIPAK------ADLLFEV------HLINFS-IDPQVVRSSADIESLLR 520
F PP IP D++ L +S ++ Q S+ I S+
Sbjct: 379 SVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 521 LIYC 524
+
Sbjct: 434 ELKV 437
Score = 33.7 bits (76), Expect = 0.16
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 49/151 (32%)
Query: 51 SHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLD-DCVGPKVEEAC-ADPPAGSII-LL 107
SH+G + LK + + L + + FLD + K+ A +GSI+ L
Sbjct: 475 SHIG---------HHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 108 ENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGE 167
+ L+FY K + I ND R +++L
Sbjct: 525 QQLKFY----------------------KPY---------ICDND--PKYERLVNAIL-- 549
Query: 168 GFEQRASGFLLK-KELDYFSKALDNPEKPFL 197
F + L+ K D AL ++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 68.5 bits (167), Expect = 9e-13
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG-LIPAFEYA 452
+I ++G G P + +HY + + ++ + T+ + P LG +
Sbjct: 54 QIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEKKELAGLAIG 112
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINFSIDPQ 507
+ SM+ GE++ +EL +G G +P ADLL+EV +I F +
Sbjct: 113 VASMKS------GERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 64.3 bits (157), Expect = 1e-12
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 396 KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS 455
PV G V VH E + T +++ F LG +I A + ++
Sbjct: 26 PGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCDVIQALDLSVPL 79
Query: 456 MQKGSLNLSGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINFSIDPQVVRSS 512
M G E + A + C+G G P IP A L EV L P + S
Sbjct: 80 MDVG------ETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSG 131
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 63.1 bits (154), Expect = 2e-12
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 372 NTEDKVSHVSTGGGASLELLEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLR 431
E + ++ GG +L K ++G P G V VHY+ E+ D ++ R
Sbjct: 4 EQEFEKVELTADGGVIKTIL--KKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDR 61
Query: 432 KSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKA 491
P +F L +I ++ + SM+K EK +G GC IP +
Sbjct: 62 NV-PFKFHLEQGEVIKGWDICVSSMRKN------EKCLVRIESMYGYGDEGCGESIPGNS 114
Query: 492 DLLFEVHLINF 502
LLFE+ L++F
Sbjct: 115 VLLFEIELLSF 125
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 67.5 bits (165), Expect = 2e-12
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 394 KIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
K+ ++G G + P +G V+VHY + D + R +F+LG +I ++
Sbjct: 16 KLLKEGEGWDTPEVGDEVEVHYTGTLL-DGKKFDSSRDRDD-TFKFKLGQGQVIKGWDQG 73
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 512
I +M+KG E + F EL +G G PP IPA A L F+V L++++ + +
Sbjct: 74 IKTMKKG------ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDG 127
Query: 513 ADIESLLRLIYC 524
+ +L+
Sbjct: 128 GIFKKILKEGDK 139
Score = 65.2 bits (159), Expect = 1e-11
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 395 IKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAIL 454
+KE E P GA V V + + + + + P F+ +I + A+L
Sbjct: 251 LKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQE-PFEFKTDEEAVIEGLDRAVL 309
Query: 455 SMQKGSLNLSGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINF 502
+M+KG E + E +G+ +P + +++EV L++F
Sbjct: 310 NMKKG------EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353
Score = 65.2 bits (159), Expect = 1e-11
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 17/135 (12%)
Query: 395 IKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAIL 454
+KE ENP V V Y E D T + KS F + L PA A+
Sbjct: 134 LKEGDKWENPKDPDEVFVKYEARLE------DGTVVSKSEGVEFTVKDGHLCPALAKAVK 187
Query: 455 SMQKGSLNLSGEKSDFFASYELCFGALGCPPR-----IPAKADLLFEVHLINFSIDPQVV 509
+M+K GEK + FG +G P +P A L+ ++ L+++ ++
Sbjct: 188 TMKK------GEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG 241
Query: 510 RSSADIESLLRLIYC 524
++ +L+
Sbjct: 242 DDKKILKKVLKEXEG 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 3e-12
Identities = 56/326 (17%), Positives = 104/326 (31%), Gaps = 116/326 (35%)
Query: 237 KGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVD--FITADKFAEDAKTGEATVESG 294
+GM G LY +K + + +A+ HF F D + T+ G
Sbjct: 1629 QGM--GMDLYK--TSKAAQDVWNRADN-----HFKDTYGFSILDIVINNPV--NLTIHFG 1677
Query: 295 VPDG------WMGL------DIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKG 342
G + + D K+ ++FKE + + KG
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-------------KG 1724
Query: 343 IMDAVVDVT--TKGAITIIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKIKEKGF 400
++ A T T+ A+T AA E L K KG
Sbjct: 1725 LLSA----TQFTQPALT------LMEKAA------------------FEDL----KSKGL 1752
Query: 401 GENPV------LG---AHVQVHYMYYAEANELP----IDITYLR----KSIPERFQLGSS 443
LG A + A+ + +++ + R + R +LG S
Sbjct: 1753 IPADATFAGHSLGEYAALA-------SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 444 GLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503
Y ++++ G + S + A + R+ + L E+ +N++
Sbjct: 1806 N------YGMIAINPGRVAASFSQE---ALQYVV-------ERVGKRTGWLVEI--VNYN 1847
Query: 504 IDP-QVVRSSADIESLLRLIYCLKSI 528
++ Q V ++ D+ +L + L I
Sbjct: 1848 VENQQYV-AAGDLRALDTVTNVLNFI 1872
Score = 67.8 bits (165), Expect = 5e-12
Identities = 88/553 (15%), Positives = 163/553 (29%), Gaps = 176/553 (31%)
Query: 55 RP----DGSKNLKYSLKPV-------AEELKTLLKKDITFLDDCVGPKVEEACADPPAGS 103
RP GS L++ L V A +L+ + F P A D P
Sbjct: 7 RPLTLSHGS--LEHVL-LVPTASFFIASQLQ-----E-QFNKILPEPTEGFAADDEPTTP 57
Query: 104 IILLENLRF--YV--EEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHR 159
L+ +F YV E V + + + +F + DI H
Sbjct: 58 AELV--GKFLGYVSSLVEPSKVGQFDQVLNLC---LTEFENCYLEGNDI---------HA 103
Query: 160 AHSSMLGE-GFEQRASGFLLKKELDYFSKALDNPEKPFL-----AILGGAKVADKIQLIE 213
+ +L E + L+K +Y A ++PF A+ QL+
Sbjct: 104 LAAKLLQENDTTLVKTKELIK---NYI-TARIMAKRPFDKKSNSALFRAVG-EGNAQLV- 157
Query: 214 NLLDKVNEMIIGG-GMSYTFLKELKGMNIGGSLYDPEGAKIVKKLVEKAEK--------- 263
I GG G + + +EL+ LY +V L++ + +
Sbjct: 158 --------AIFGGQGNTDDYFEELR------DLYQTYHV-LVGDLIKFSAETLSELIRTT 202
Query: 264 NNVKLHFP--VDFI----TADKFAEDAKTGEATV------------------ESGVPDGW 299
+ + F ++ + + + G G
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 300 M-----GL-----DI-------GPKSRELFKEPIARA-KVIVWNG-------------PS 328
+ G + S E F + +A V+ + G PS
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 329 GVFEFENFAKGTKGIMDAVVDVTTKGAITIIGGGDTATCAAKW------NTEDKVSHVST 382
+ + +G M ++ ++T + + ++ A K N + V +
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLVVS 380
Query: 383 GGGASLELLEGKI-KEKG----------FGENPVLGAH----VQV--HYMYYAEANEL-- 423
G SL L + K K F E + ++ V H A++L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 424 ----PIDITYLRKS--IP-------ERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDF 470
++++ K IP ++ S + I+ + + E +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP---VKW--ETTTQ 495
Query: 471 F-ASYELCFGALG 482
F A++ L FG G
Sbjct: 496 FKATHILDFGPGG 508
Score = 45.8 bits (108), Expect = 3e-05
Identities = 65/323 (20%), Positives = 106/323 (32%), Gaps = 108/323 (33%)
Query: 31 AALDTIKYALDKGAKSVVLMSHLG-R-----PDGS---KNLKYSLKPVAEELKT--LLKK 79
A D+ + K++ ++ +G R P+ S L+ SL+ E + + L
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSIS 342
Query: 80 DITFLDDCVGPKVEEACAD-PPAGSI-ILLENLR--FYVEEEG-----KGVNAAGEKVKA 130
++T + V V + + P + I L N V G G+N K KA
Sbjct: 343 NLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKA 398
Query: 131 SAE-DVKK--FRESLRKLGDIYVNDAFGTAHR-----A--HSSMLGEGFEQRASGFLLKK 180
+ D + F E RKL F +R + HS +L + L+K
Sbjct: 399 PSGLDQSRIPFSE--RKL-------KFS--NRFLPVASPFHSHLLVPASDLINKD-LVKN 446
Query: 181 ELDYFSKALDNPEKPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMSYTF----LKEL 236
+ + +K + P V D TF L+ L
Sbjct: 447 NVSFNAKDIQIP------------VYD-----------------------TFDGSDLRVL 471
Query: 237 KGMNIGGSLYDPEGAKIVKKLV--EKAEKNNVKLHFPVDF----------ITADKFAEDA 284
G +I + D I++ V E + H +DF +T +D
Sbjct: 472 SG-SISERIVD----CIIRLPVKWETTTQFKA-THI-LDFGPGGASGLGVLTHR--NKDG 522
Query: 285 KTGEATVESGVPDGWMGLDIGPK 307
TG + +G D D G K
Sbjct: 523 -TGVRVIVAGTLDINPDDDYGFK 544
Score = 42.7 bits (100), Expect = 3e-04
Identities = 42/265 (15%), Positives = 69/265 (26%), Gaps = 106/265 (40%)
Query: 50 MSHLGRPDGSKNLKYSLKPVAEELKTLLKKDITFLDDCVGPKVEEACADP----PAGSII 105
M DG + K + E TF + + PA +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHST-----SYTF----RSE--KGLLSATQFTQPA---L 1736
Query: 106 LLENLRFYVEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIYVNDAF-GTAHRAHSSM 164
L +E KA+ ED L+ G I + F G HS
Sbjct: 1737 TL------ME-------------KAAFED-------LKSKGLIPADATFAG-----HS-- 1763
Query: 165 LGE-----------GFE-------QRASGFLLKKELDYFSKALD-------NPEKPFLAI 199
LGE E R G ++ + NP + A
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINPGR-VAAS 1820
Query: 200 LGGAKVADKIQLIEN----LLDKVN------EMIIGGGMS-----YTFLKELKGMNIGGS 244
+ ++ + L++ VN + + G + L +K I
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI--- 1877
Query: 245 LYDPEGAKIVKKLVEKAEKNNVKLH 269
I+ +L + V+ H
Sbjct: 1878 -------DII-ELQKSLSLEEVEGH 1894
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 60.6 bits (148), Expect = 9e-12
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 399 GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK 458
G G + +HY E + D + + P F LG+ +I ++ +L M +
Sbjct: 1 GSPIKSRKGDVLHMHYTGKLE-DGTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQGLLGMCE 58
Query: 459 GSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 508
G EK EL +G G PP+IP A L+FEV L+ ++
Sbjct: 59 G------EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 62.1 bits (151), Expect = 9e-12
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 396 KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILS 455
PV G V VH E + T +++ F LG +I A + ++
Sbjct: 52 PGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCDVIQALDLSVPL 105
Query: 456 MQKGSLNLSGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINF 502
M G E + A + C+G G P IP A L EV L
Sbjct: 106 MDVG------ETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 60.8 bits (148), Expect = 2e-11
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 394 KIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
IK++G G P G V+VHY+ E N D + R F LG +I ++
Sbjct: 19 LIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGD-QFSFNLGRGNVIKGWDLG 76
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503
+ +M KG E ++F + +G G PP+IP A L+FEV L +S
Sbjct: 77 VATMTKG------EVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 62.2 bits (151), Expect = 6e-11
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 394 KIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
IK +G G E P++G V VHY + + D + RK F LG +I A++ A
Sbjct: 56 VIKREGTGTEMPMIGDRVFVHYTGWLL-DGTKFDSSLDRKD-KFSFDLGKGEVIKAWDIA 113
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 507
I +M+ G E E +G+ G PP+IP A L+FEV L F +
Sbjct: 114 IATMKVG------EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDL 162
Score = 58.0 bits (140), Expect = 2e-09
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG---SSGLIPAFE 450
P GA V+V Y + RF++G + L E
Sbjct: 174 IQTRGEGYAKPNEGAIVEVALEGYYKDKLFD--------QRELRFEIGEGENLDLPYGLE 225
Query: 451 YAILSMQKGSLNLSGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF 502
AI M+KG E S + FG++G +IP A+L +E+HL +F
Sbjct: 226 RAIQRMEKG------EHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 272
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 57.6 bits (140), Expect = 1e-10
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 391 LEGKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 449
++ + G G P G VHY E + D + R P +F LG +I +
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNK-PFKFMLGKQEVIRGW 59
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 502
E + M G +++ S + +GA G P IP A L+F+V L+
Sbjct: 60 EEGVAQMSVG------QRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 56.8 bits (138), Expect = 2e-10
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 391 LEGKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 449
++ G G P G V +HY E N D + R S P + +G +I +
Sbjct: 8 VKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGS-PFQCNIGVGQVIKGW 65
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 503
+ I + G EK+ +G G P IP + L+F+V L+ +
Sbjct: 66 DVGIPKLSVG------EKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 57.3 bits (139), Expect = 3e-10
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 365 ATCAAKWNTEDKVSHVSTGGGASLELLEGKIKEKGFGEN-PVLGAHVQVHYMYYAEANEL 423
A ED G + +K G GE P++G V VHY N
Sbjct: 2 APATVTEQGEDIT--SKKDRG-----VLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGK 53
Query: 424 PIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGC 483
D ++ R P F LG +I A++ + +M+KG E E +G+ G
Sbjct: 54 KFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKKG------EICHLLCKPEYAYGSAGS 106
Query: 484 PPRIPAKADLLFEVHLINF 502
P+IP+ A L FE+ L++F
Sbjct: 107 LPKIPSNATLFFEIELLDF 125
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 56.2 bits (136), Expect = 9e-10
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 394 KIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
+K G GE P++G V VHY N D ++ R P F LG +I A++
Sbjct: 40 IVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVIKAWDIG 97
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 502
+ +M+KG E E +G+ G P+IP+ A L FE+ L++F
Sbjct: 98 VATMKKG------EICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 54.2 bits (131), Expect = 3e-09
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 391 LEGKIKEKGFG-ENPVLGAHVQVHYMYYAE------ANELPIDITYLRKSIPERFQLGSS 443
I +KG P G V Y N P F++G
Sbjct: 6 YTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAK-PLSFKVGVG 64
Query: 444 GLIPAFEYAILSMQKGSLNLSGEKSDFFASYELCFGALGCP-PRIPAKADLLFEVHLINF 502
+I ++ A+L+M KG EK+ E +G G P +IP L+FEV L++
Sbjct: 65 KVIRGWDEALLTMSKG------EKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 54.2 bits (131), Expect = 3e-09
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 391 LEGKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 449
LE K+ G G P G V VHY + D + R P +F LG+ +I +
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFP-DGKQFDSSRSRGK-PFQFTLGAGEVIKGW 83
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 501
+ + +M G EK+ F Y+L +G G PP IP KA L+FEV L+
Sbjct: 84 DQGVATMTLG------EKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 57.6 bits (139), Expect = 3e-09
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 394 KIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG---SSGLIPAF 449
+I+ +G G P GA V+V Y + + D RF++G + L
Sbjct: 30 RIQTRGEGYAKPNEGAIVEVALEGYYK--DKLFD------QRELRFEIGEGENLDLPYGL 81
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSIDP 506
E AI M+KG E S + FG++G +IP A+L +E+HL +F
Sbjct: 82 ERAIQRMEKG------EHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 133
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 53.8 bits (130), Expect = 4e-09
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 392 EGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSGLIPAFE 450
E K G + VHY Y E + T+ + P F LG + ++
Sbjct: 17 EVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWD 76
Query: 451 YAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDP 506
+ M G EK L +G G IP ++ L+F + L+ P
Sbjct: 77 QGLKGMCVG------EKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLEIRNGP 125
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 55.6 bits (134), Expect = 5e-09
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAI 453
+ +G G G V VHY + + D + R P F LG +I ++ +
Sbjct: 109 EDLTEGSGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRND-PFAFVLGGGMVIKGWDEGV 166
Query: 454 LSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 501
M+ G +L +GA G IP A L+FEV L++
Sbjct: 167 QGMKVG------GVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 53.4 bits (129), Expect = 6e-09
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 450
L+ + +G G G V VHY + + D + R P F LG +I ++
Sbjct: 30 LKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRND-PFAFVLGGGMVIKGWD 87
Query: 451 YAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 501
+ M+ G +L +GA G IP A L+FEV L++
Sbjct: 88 EGVQGMKVG------GVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 53.9 bits (130), Expect = 2e-08
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 449
K+ G G P V V Y L D T P FQ+ +IP +
Sbjct: 111 KVINSGNGVKPGKSDTVTVEY-----TGRLIDGTVFDSTEKTGK-PATFQVS--QVIPGW 162
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 500
A+ M GS + + L +G I L+F++HLI
Sbjct: 163 TEALQLMPAGS------TWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLI 207
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 50.1 bits (120), Expect = 1e-07
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 391 LEGKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 450
L K G+G V G ++ HY+ E ++ D +Y R P F++G +I ++
Sbjct: 14 LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKV-FDSSYNRGK-PLTFRIGVGEVIKGWD 71
Query: 451 YAILSMQKGSLNLSGEKSDFFASYELCFGALG-----CPPRIPAKADLLFEVHLINFS 503
IL L+G K EL +G G IP + LLF++ I +
Sbjct: 72 QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGKA 129
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 50.5 bits (121), Expect = 3e-07
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 449
++ E G GE P V V+Y L D +Y R P F+L G+IP +
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNY-----KGTLIDGKEFDNSYTRGE-PLSFRLD--GVIPGW 177
Query: 450 EYAILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 500
+ +++KG K EL +G G P IP + L+F+V L+
Sbjct: 178 TEGLKNIKKGG------KIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELL 221
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 49.7 bits (119), Expect = 4e-07
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 394 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSGLIPAFEYA 452
G G P V+V Y L D +S P+ F+L +I + A
Sbjct: 122 TELTPGTGPKPDANGRVEVRY-----VGRL-PDGKIFDQSTQPQWFRLD--SVISGWTSA 173
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 500
+ +M G+ K + +GA G I L+FE+ LI
Sbjct: 174 LQNMPTGA------KWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELI 215
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 48.1 bits (115), Expect = 8e-07
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 394 KIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYA 452
+ +G G+ P + +VHY + D + R P F+ +I + A
Sbjct: 42 QRIARGSGKRAPAIDDKCEVHYTGRLR-DGTVFDSSRERGK-PTTFRPN--EVIKGWTEA 97
Query: 453 ILSMQKGSLNLSGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 501
+ M++G + F Y+L +G G IP + L F+V LI+
Sbjct: 98 LQLMREGD------RWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 37.4 bits (87), Expect = 0.005
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 407 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGE 466
V + Y E L +D + + P + G LI E A+ + G+
Sbjct: 6 DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEV------GD 56
Query: 467 KSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 508
K D +G +L+ V F ++
Sbjct: 57 KFDVAVGANDAYG--------QYDENLVQRVPKDVFMGVDEL 90
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 35.7 bits (83), Expect = 0.013
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 410 VQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKG 459
+ Y + + + +D ++ P F +G++ +I E A+L Q G
Sbjct: 13 ALIEYEVREQGSSIVLDSNISKE--PLEFIIGTNQIIAGLEKAVLKAQIG 60
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 35.3 bits (82), Expect = 0.018
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 407 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGE 466
V + Y E L +D + + P + G LI E A+ + G+
Sbjct: 6 DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEV------GD 56
Query: 467 KSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 508
K D +G +L+ V F ++
Sbjct: 57 KFDVAVGANDAYG-----QYDE---NLVQRVPKDVFMGVDEL 90
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 33.4 bits (77), Expect = 0.079
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 407 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKG 459
+ V VH+ + + T P F+LG + L E +L ++ G
Sbjct: 28 NSAVLVHFTLKLDDGTT-AESTRNNGK-PALFRLGDASLSEGLEQHLLGLKVG 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.096
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 13/39 (33%)
Query: 254 VKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVE 292
+KKL + ++KL+ D +A A +AT+E
Sbjct: 22 LKKL-----QASLKLYAD-D--SAPALAI-----KATME 47
Score = 31.5 bits (70), Expect = 0.33
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 9/28 (32%)
Query: 126 EKVKASAEDVKKFRESLRKLGDIYVNDA 153
EK + +KK + SL KL Y +D+
Sbjct: 18 EK-----QALKKLQASL-KL---YADDS 36
Score = 29.5 bits (65), Expect = 1.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 233 LKELKGMNIGGSL--YDPEGAK--IVKKLVE 259
LK+L+ SL Y + A +K +E
Sbjct: 22 LKKLQA-----SLKLYADDSAPALAIKATME 47
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 31.9 bits (73), Expect = 0.24
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 407 GAHVQVHYMYYAEANELPIDITY------------LRKSIPERFQLGSSGLIPAFEYAIL 454
G ++V Y+ E+ ++ D + R+ P F +G LI FE A+L
Sbjct: 5 GVKIKVDYIGKLESGDV-FDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 455 SMQKG 459
M+ G
Sbjct: 64 DMEVG 68
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display,
selectively infective phages, viral protein; HET: TRO;
1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1
PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Length = 217
Score = 31.4 bits (70), Expect = 0.62
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 358 IIGGGDTATCAAKWNTEDKVSHVSTGGGASLELLEGKIKEKGFGENPVLGAHVQVHYMYY 417
++ GD C W + GGG+ EG E G + P G Y Y
Sbjct: 44 VVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGSEGGGTKPPEYGDTPIPGYTYI 103
Query: 418 AEANELPIDITY 429
P+D TY
Sbjct: 104 N-----PLDGTY 110
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 30.4 bits (69), Expect = 0.80
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 407 GAHVQVHYMYYA----------EANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSM 456
G V++ Y Y E + P G ++P + AIL M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 457 QKG 459
G
Sbjct: 65 DVG 67
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET:
GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Length = 65
Score = 28.2 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 164 MLGEGFEQRASGFLLKKELDYFSKALDNPEKPFLAILGGAKVADKIQ 210
+L E E +A FLLK+EL YF + L + +L KVA + Q
Sbjct: 8 ILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLLLEAMKVAVRKQ 54
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 29.5 bits (67), Expect = 1.5
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 22/102 (21%)
Query: 407 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGSLNLSGE 466
V + Y E +D + G LIP E A+ ++ GE
Sbjct: 6 DKVVTIRYTLQVEGEV--LD------QGELSYLHGHRNLIPGLEEALEGREE------GE 51
Query: 467 KSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 508
E +G P P + + V L F D +V
Sbjct: 52 AFQAHVPAEKAYG-----PHDP---EGVQVVPLSAFPEDAEV 85
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.4 bits (69), Expect = 1.5
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 18/122 (14%)
Query: 190 DNPEKPFLAILGGAK-VADKIQLIENLLDKVNEMI---IGGGMSYTFLKELKGMNIGGSL 245
D E + G + D +L+ L ++ + + G + LK G + +
Sbjct: 182 DKVEWFIEDAMKGGRQQNDI-KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTH 240
Query: 246 Y----DPEGAKIVKKLVEKAEKNNVKLHFP---VDFITADK------FAEDAKTGEATVE 292
G +I+ L + A++ + V + D TG +
Sbjct: 241 RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIG 300
Query: 293 SG 294
+
Sbjct: 301 AK 302
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 30.1 bits (68), Expect = 1.6
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 114 VEEEGKGVNAAGEKVKASAEDVKKFRESLRKLGDIY-VNDAFGTAHRAHSSMLGEGFEQR 172
E+ + + EDV L K+ + + +FG H + +
Sbjct: 181 EEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVY-----KAGNVV 235
Query: 173 ASGFLLKKELDYFSKALDNPEKPFLAILGGA 203
+ +L+ +Y SK + P + G
Sbjct: 236 LTPTILRDSQEYVSKKHNLPHNSLNFVFHGG 266
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 29.8 bits (67), Expect = 1.8
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 407 GAHVQVHYMYYA----------EANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSM 456
G V++ Y Y E + P G ++P + AIL M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 457 QKG 459
G
Sbjct: 65 DVG 67
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A
{Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A*
1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A*
1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Length = 390
Score = 30.0 bits (67), Expect = 2.0
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 17/56 (30%)
Query: 297 DGWMGLDIGPKSR---ELFK----------EPIARAKVIV----WNGPSGVFEFEN 335
W + R EL+ + +A + V+V S FE ++
Sbjct: 286 GRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAHSGVMVSMKEPGWYSFGFEIKD 341
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.5 bits (66), Expect = 2.8
Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 43/212 (20%)
Query: 255 KKLVEKAEK-NNVKLHFPVDFIT------------ADKFAEDAKTGEATVESGVP----- 296
KLVE ++ N+K P +F + F + K A + +P
Sbjct: 97 LKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVS 156
Query: 297 -DGWMGLDIGPKSRELFKEPIARAKVIVWNGPSGVFEFENFAKGTKGIMDAVVDVTTKGA 355
+ + G G ++ R KV+++ + + + + ++ D T
Sbjct: 157 SNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK 216
Query: 356 ITIIGG-GDTAT-------CAAKWNTEDKVSHVSTGGGASLELLEGKIKEKGFGENPVLG 407
I + + ++S+ + +K+K + E V
Sbjct: 217 TMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISS------QDFLADMKDKSYEEKIVRC 270
Query: 408 AHVQVHYM----------YYAEANELPIDITY 429
Q+ + EA +L ++ Y
Sbjct: 271 HLYQIFFRGDLYNFEIGPNAIEATKLYPEVKY 302
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 29.5 bits (67), Expect = 3.4
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 31/104 (29%)
Query: 185 FSKALDNPEKPFLAILGGAKVADK---------------------IQLIENLLDKVNEMI 223
+KAL P A + + K I ++++LL VNE+
Sbjct: 279 LAKALGGGIMPIGATIFRKDLDFKPGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEI- 337
Query: 224 IGGGMSYTFLKEL------KGMNIGGSLYDPEGAK-IVKKLVEK 260
G + L+ L G+ G + + I+ + ++
Sbjct: 338 --GKIFAEELQGLADDVRGIGLAWGLEYNEKKVRDRIIGESFKR 379
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 29.0 bits (65), Expect = 3.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 26 VPMK--EAALDTIKYALDKGAKSVVLMSHLGRPD 57
VP++ + A A+ G + + +HLG D
Sbjct: 121 VPLQDLDLACKEASRAVAAGHLGIQIGNHLGDKD 154
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding,
glycosylation, ANT hydrolase-hydrolase inhibitor
complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus}
PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A*
1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A*
2aep_A* 2aeq_A*
Length = 469
Score = 29.2 bits (65), Expect = 3.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 17/56 (30%)
Query: 297 DGWMGLDIGPKSR---ELFKEP----------IARAKVIV----WNGPSGVFEFEN 335
D WMG I +SR E FK +VIV W+G SG+F E
Sbjct: 359 DLWMGRTISKESRSGYETFKVIGGWSTPNSKSQVNRQVIVDNNNWSGYSGIFSVEG 414
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.7
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 25/87 (28%)
Query: 123 AAGEKVKASAEDVKKFRESLRKLGDIYVNDAFGTAHRAHSSMLGEGFEQRASGFLLKKEL 182
A +++ E ++K+RE RK + DA E R KK+L
Sbjct: 75 AQADRLTQEPESIRKWREEQRK--RLQELDAASKVMEQ---------EWREKA---KKDL 120
Query: 183 DYF----------SKALD-NPEKPFLA 198
+ + +K + +K F
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQ 147
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance,
bacterial antibiotic resistance, methicillin resistance,
beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus
aureus} PDB: 2iwc_A* 2iwd_A*
Length = 246
Score = 28.0 bits (62), Expect = 7.9
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 14/64 (21%)
Query: 236 LKGMNIGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKFAEDAKTGEATVESGV 295
LK M +D + + V+ + +K+ K KTG V
Sbjct: 154 LKNMKQHNMHFDNKAIEKVENSMTLKQKDTYKYV--------------GKTGTGIVNHKE 199
Query: 296 PDGW 299
+GW
Sbjct: 200 ANGW 203
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 27.9 bits (63), Expect = 8.7
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 241 IGGSLYDPEGAKIVKKLVEKAEKNNVKLHFPVDFITADKF 280
G LY+P+G I L++K + + + D IT ++
Sbjct: 253 ANGGLYNPDGLDI-PYLLDKRDSFGMVTNLFTDVITNEEL 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.392
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,244,604
Number of extensions: 533695
Number of successful extensions: 1668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 83
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)