BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8372
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 146/209 (69%), Gaps = 15/209 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IKN+ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 101 EIKVKTAELLN-ACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 159
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 160 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 219
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY---------CLNIPT 470
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y + PT
Sbjct: 220 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPT 279
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
TF+ + ++ YG+DKPD R+ KI+
Sbjct: 280 MTFAEV-----LATYGTDKPDTRFGMKII 303
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 153/255 (60%), Gaps = 8/255 (3%)
Query: 633 KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTK-ILPDLNVEEFRNKENLEEGDLIV 691
K I +N A FN ++ V + + W + + I+ +E R E EE D+++
Sbjct: 343 KDIESIRNFAADHFNQ-EILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEE-DVVL 400
Query: 692 VSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGT--L 749
++ G+ SLLG +R E + T + +P FS WVVDFPLFLP + L
Sbjct: 401 LTAGEHNKACSLLGKLRLECADLL--ETRGVVLRDPTLFSFLWVVDFPLFLPKEENPREL 458
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FL 808
ESAHHPFT PHP D HLL + P + R HYDLVLNGNEIGGGSIRIH++ELQ IL L
Sbjct: 459 ESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLL 518
Query: 809 NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGA 868
+ L H++QA YG PPHGGIALG+DRL+ ++ G+ SIRDVIAFPK F G D +S
Sbjct: 519 KEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDLMSNT 578
Query: 869 PCDIPEAERNYYNLK 883
P +P E Y+++
Sbjct: 579 PDSVPPEELKPYHIR 593
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQ 57
+ R++TCG LR S + + VTLCGW+Q +R + F +LRD G VQVI+P +
Sbjct: 8 FVVRTNTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDE 59
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 9/199 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+AS++T++N+ADV +P + N E+ RLK+RYLD R PEM L+ R+K R
Sbjct: 93 EVLASSLTIINRADV-LPLDSNHVNT--EEARLKYRYLDLRRPEMAQRLKTRAKITSLVR 149
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
F+ H F+++ETP L K TP GAR+++VP+ KFY+L QSPQ KQLLM+ DR
Sbjct: 150 RFMDDH-GFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR 208
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRTFS 474
Y+QI +C+RDE R DRQPEFTQ+D+E SF T V ++E L+ + + F
Sbjct: 209 YYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFP 268
Query: 475 RISYNDAISLYGSDKPDLR 493
+++ +A YGSDKPDLR
Sbjct: 269 VMTFAEAERRYGSDKPDLR 287
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 16/257 (6%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD---SLEWTNK-LTKILPDLNVEE 677
L +P T K+I EY N K + ++ +KV + LE N + K L +E+
Sbjct: 321 LRVPGGASLTRKQIDEYGNFVK-IYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIED 379
Query: 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737
++ ++GD+I ++ V +G +R +KV L L + ++ WV+D
Sbjct: 380 ILDRTAAQDGDMIFFGADNKKIVADAMGALR-----LKVGKDLGLT--DESKWAPLWVID 432
Query: 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS 797
FP+F G L + HHPFT P L + P YD+V+NG E+GGGS+RIH+
Sbjct: 433 FPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHN 492
Query: 798 SELQESILHFLNI----ETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853
++Q+++ L I + ++ A KYG PPH G+A G+DRL +L GT +IRDVI
Sbjct: 493 GDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVI 552
Query: 854 AFPKGFGGKDHLSGAPC 870
AFPK ++ AP
Sbjct: 553 AFPKTTAAACLMTEAPS 569
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDMFAL----LRDAYGQVQV 51
R+ CG LRLS V + VTLCGW+ N+R D+ +L +RD G VQV
Sbjct: 2 RTEYCGQLRLSHVGQQVTLCGWV-NRRRDLGSLIFIDMRDREGIVQV 47
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 9/199 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+AS++T++N+ADV +P + N E+ RLK+RYLD R PEM L+ R+K R
Sbjct: 93 EVLASSLTIINRADV-LPLDSNHVNT--EEARLKYRYLDLRRPEMAQRLKTRAKITSLVR 149
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
F+ H F+++ETP L K TP GAR+++VP+ KFY+L QSPQ KQLLM+ DR
Sbjct: 150 RFMDDH-GFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR 208
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL----NIPTRTFS 474
Y+QI +C+RDE R DRQPEFTQ+D+E SF T V ++E L+ + + F
Sbjct: 209 YYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFP 268
Query: 475 RISYNDAISLYGSDKPDLR 493
+++ +A YGSDKPDLR
Sbjct: 269 VMTFAEAERRYGSDKPDLR 287
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 16/257 (6%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD---SLEWTNK-LTKILPDLNVEE 677
L +P T K+I EY N K + ++ +KV + LE N + K L +E+
Sbjct: 321 LRVPGGASLTRKQIDEYGNFVK-IYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIED 379
Query: 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737
++ ++GD+I ++ V +G +R +KV L L + ++ WV+D
Sbjct: 380 ILDRTAAQDGDMIFFGADNKKIVADAMGALR-----LKVGKDLGLT--DESKWAPLWVID 432
Query: 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS 797
FP+F G L + HHPFT P L + P YD+V+NG E+GGGS+RIH+
Sbjct: 433 FPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHN 492
Query: 798 SELQESILHFLNI----ETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853
++Q+++ L I + ++ A KYG PPH G+A G+DRL +L GT +IRDVI
Sbjct: 493 GDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVI 552
Query: 854 AFPKGFGGKDHLSGAPC 870
AFPK ++ AP
Sbjct: 553 AFPKTTAAACLMTEAPS 569
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDMFAL----LRDAYGQVQV 51
R+ CG LRLS V + VTLCGW+ N+R D+ +L +RD G VQV
Sbjct: 2 RTEYCGQLRLSHVGQQVTLCGWV-NRRRDLGSLIFIDMRDREGIVQV 47
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 152/287 (52%), Gaps = 20/287 (6%)
Query: 596 FQIKNVDN-FRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTV 654
++K V FR + E V + L LPK L + K++ E + +AK+ ++
Sbjct: 297 LELKEVGPLFRQSGFRVFQEAESV-KALALPKAL--SRKEVAELEEVAKR-HKAQGLAWA 352
Query: 655 KVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKI 714
+V++ ++ + K L + E GD ++ G ++ + LG +R +
Sbjct: 353 RVEEG-GFSGGVAKFLEPVR-EALLQATEARPGDTLLFVAGPRKVAATALGAVR-----L 405
Query: 715 KVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLE 773
+ + L L+ + F WVVDFPL + HHPFT PHPED LL +P
Sbjct: 406 RAADLLGLKREG---FRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGR 462
Query: 774 VRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNI----ETSSLQHMIQAFKYGCPPH 829
VR L YDLVLNG E+GGGSIRIH LQ + L I + ++A +YG PPH
Sbjct: 463 VRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPH 522
Query: 830 GGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
GGIA G+DRL++++ G+ SIR+VIAFPK GKD L+GAP +PE +
Sbjct: 523 GGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQ 569
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/176 (52%), Positives = 119/176 (67%), Gaps = 9/176 (5%)
Query: 330 LRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVV 389
LRLK+RYLD R MQ NLR R + + +FL FV+VETP L K TP GAR+F+V
Sbjct: 126 LRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFL-DREGFVQVETPFLTKSTPEGARDFLV 184
Query: 390 P-THEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSF 448
P HEP FY+L QSPQ KQ+LMV +DRYFQIARC+RDE R DRQP+FTQLD+E+SF
Sbjct: 185 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSF 244
Query: 449 TTRDDVMRLIEELLCYC------LNIPTRTFSRISYNDAISLYGSDKPDLRYDCKI 498
+DV+ L E L+ + + +P F R+SY +A+ YGSDKPDLR+ ++
Sbjct: 245 VEVEDVLELNERLMAHVFREALGVELPL-PFPRLSYEEAMERYGSDKPDLRFGLEL 299
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDMFAL----LRDAYGQVQVIVPNHQVPNIYRT 64
R+H G+LR + V + V L GW+ N+R D+ L LRD G VQ++ H Y T
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWV-NRRRDLGGLIFLDLRDREGLVQLVA--HPASPAYAT 59
Query: 65 S 65
+
Sbjct: 60 A 60
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 123/210 (58%), Gaps = 5/210 (2%)
Query: 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 142
+ YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD G
Sbjct: 28 KQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCG 87
Query: 143 AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI 202
AGIGRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE +
Sbjct: 88 AGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS- 146
Query: 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKNEYDDEDSSVVR 261
YDVIWIQWV+ + D+ + +FL CK L NGII+IKDN+A GV DD DSSV R
Sbjct: 147 -YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI--LDDVDSSVCR 203
Query: 262 SLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291
L + A L + E+ E P +++
Sbjct: 204 DLDVVRRIICSAGLSLLAEERQENLPDEIY 233
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 9/211 (4%)
Query: 80 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVL 139
D + Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R L
Sbjct: 44 DPEKGWYGKALEYWRTVPATVSGVLGGXDHVHDVDIEGSRNFIASLPGH-----GTSRAL 98
Query: 140 DVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 199
D GAGIGRI+K LL K + DLLE +E+AK E+ + P
Sbjct: 99 DCGAGIGRITKNLLTKLYATTDLLEPVKHXLEEAKRELAGXPVGKFILASXETATLPPN- 157
Query: 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 259
YD+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+
Sbjct: 158 ---TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSL 214
Query: 260 VRSLPQFCLLFSKANLKCVKSEKGEFSPMDL 290
RS + LF+++ ++ VK E P DL
Sbjct: 215 TRSDIHYKRLFNESGVRVVKEAFQEEWPTDL 245
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 42/272 (15%)
Query: 199 DLNIKYD---VIWIQWVLMFILDEDIIKFLNLCKQILNKNG---IIIIKDNVASGVKNEY 252
D+ +YD VIW WV + + D KF+ L +K G +++ K++ A G+ E
Sbjct: 9 DVTPEYDGKEVIWAGWVHL-LRDLGGKKFIILR----DKTGLGQVVVDKNSSAFGISQEL 63
Query: 253 DDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKA 312
E VR + VK++K +P + E+ A IT+L+KA
Sbjct: 64 TQESVIQVRGI--------------VKADKR--APRGI---------ELHAEEITLLSKA 98
Query: 313 DVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372
+P + KA D RL+ R LD R EMQ ++ +S L RE L F+E+
Sbjct: 99 KAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKE-GFIEIF 157
Query: 373 TPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYR-DES 430
TP + T GGA+ F V F L QSPQ K+ LM G V+R F++A +R +ES
Sbjct: 158 TPKIIASATEGGAQLFPVIYFGKEAF--LAQSPQLYKE-LMAGVVERVFEVAPAWRAEES 214
Query: 431 TRPDRQPEFTQLDIELSFTTRDDVMRLIEELL 462
P EF +D+E++F +DVM+L+E++L
Sbjct: 215 DTPFHLAEFISMDVEMAFADYNDVMQLLEKIL 246
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 21/127 (16%)
Query: 732 IFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790
++++VD+P S PF T+ E+ L S +DL+ EI
Sbjct: 316 LYFIVDWP-----------SDARPFYTKSKSENPELSES---------FDLIYKFLEIVS 355
Query: 791 GSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIR 850
GS R H E+ E L ++ S + ++ F YG PPH G +G+ RLM +L G QS++
Sbjct: 356 GSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVK 415
Query: 851 DVIAFPK 857
+++ FP+
Sbjct: 416 EIVPFPR 422
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 38/259 (14%)
Query: 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
L E++ I VLN+A+ +P KA+ D RL +R++D R PE+ + RS
Sbjct: 86 LGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFK 145
Query: 357 RTREFLATHRDFVEVETPTLFK-RTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415
R+F + F+E+ TP + T GG F + E + F L QSPQ KQ++M
Sbjct: 146 AVRDFFHEN-GFIEIHTPKIIATATEGGTELFPMKYFEEDAF--LAQSPQLYKQIMMASG 202
Query: 416 VDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNI----- 468
+DR ++IA +R E R E +D E++F ++VM +E L+ + +N
Sbjct: 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHN 262
Query: 469 -------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515
P F R+SY+ A+ + G + ++ PW T
Sbjct: 263 AKELDILNFELEEPKLPFPRVSYDKALEILGD--------------LGKEIPWGEDIDTE 308
Query: 516 LPRRAGEPGFDSRRGPSFF 534
R G+ ++ P +F
Sbjct: 309 GERLLGKYMMENENAPLYF 327
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
+DL G EI G R H ++ + + S + ++AF+YG PPHGG LG +R
Sbjct: 353 FDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAER 412
Query: 839 LMSILCGTQSIRDVIAFPK 857
L+ + +IR+VI FP+
Sbjct: 413 LIKQMLDLPNIREVILFPR 431
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 38/259 (14%)
Query: 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
L E++ I VLN+A+ +P KA+ D RL +R++D R PE+ + RS
Sbjct: 86 LGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFK 145
Query: 357 RTREFLATHRDFVEVETPTLFK-RTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415
R+F + F+E+ TP + T GG F + E + F L +SPQ K+++M
Sbjct: 146 AVRDFFHEN-GFIEIHTPKIIATATEGGTELFPMKYFEEDAF--LAESPQLYKEIMMASG 202
Query: 416 VDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNI----- 468
+DR ++IA +R E R E +D E++F ++VM +E L+ + +N
Sbjct: 203 LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHN 262
Query: 469 -------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515
P F R+SY+ A+ + G + ++ PW T
Sbjct: 263 AKELDILNFELEEPKLPFPRVSYDKALEILGD--------------LGKEIPWGEDIDTE 308
Query: 516 LPRRAGEPGFDSRRGPSFF 534
R G+ ++ P +F
Sbjct: 309 GERLLGKYMMENENAPLYF 327
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
+DL G EI G R H ++ + + S + ++AF+YG PPHGG LG +R
Sbjct: 353 FDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAER 412
Query: 839 LMSILCGTQSIRDVIAFPK 857
L+ + +IR+VI FP+
Sbjct: 413 LIKQMLDLPNIREVILFPR 431
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 300 EVIASNITVLNKADVNIPFHI-KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT 358
EV A + VL+ A P I K +A D L++RY+ R + + L+ ++ +
Sbjct: 76 EVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGF 135
Query: 359 REFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVD 417
R +L +DF E+ TP + + GG+ F V E + L QSPQ KQ+ MVG +
Sbjct: 136 RRYL-DRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAY--LAQSPQLYKQI-MVGVFE 191
Query: 418 RYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNIPTRTFSR 475
R +++A +R E R E+ LD+E+ F +D+MRL E LL L T
Sbjct: 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNT--- 248
Query: 476 ISYNDAISLYGSDKPDLRYDCKIMI------AIKEQPPWPSG 511
D I L G+ P D + +KE+ +P G
Sbjct: 249 --AGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVG 288
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
+DL+ G EI G RIH E L ++ + ++ FKYG PPHGG A+G +R
Sbjct: 337 FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAER 396
Query: 839 LMSILCGTQSIRDVIAFPK 857
L L G ++R AFP+
Sbjct: 397 LTQKLLGLPNVRYARAFPR 415
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 317 PFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
P K + A ++ R + RY+D PE + R R+K + R+F+ DF+EVETP
Sbjct: 172 PLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDA-DFMEVETPM 230
Query: 376 LFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP 433
L PGGA + FV + + L +P+ + L+VG +R F+I R +R+E P
Sbjct: 231 LHP-IPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSP 289
Query: 434 DRQPEFTQLDIELSFT----TRDDVMRLIEELLCYCLNIPT-----------RTFSRISY 478
PEFT ++ ++T D RLI + L T + F R++
Sbjct: 290 RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTI 349
Query: 479 NDAISLYG--------SDKPDLRYDCKIMIAIKEQPPW 508
AI Y SD LR + K + QP +
Sbjct: 350 TQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAF 387
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 739 PLFLPSDSGTL------ESAHHPFTQP-----HPEDEHLLSSNPLEVRGL--HYDLVLNG 785
P FL + G L E+A +P +P + L+ V G+ ++L + G
Sbjct: 385 PAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFITG 444
Query: 786 NEIGGGSIRIHSSELQESIL--HFLNIETSSLQHM------IQAFKYGCPPHGGIALGID 837
EI G ++ E Q + + + M I+A +YG PP GG +GID
Sbjct: 445 REIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGID 504
Query: 838 RLMSILCGTQSIRDVIAFP 856
RL+ +L + +IRDV+ FP
Sbjct: 505 RLVMLLTDSPTIRDVLLFP 523
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 317 PFHIKNYNKAKEDLRLKHRYLDF-RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
P K + ++ R + RYLD E ++ + RS+ L R+F+ +R F+EVETP
Sbjct: 151 PLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFM-VNRGFMEVETP- 208
Query: 376 LFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP 433
+ + PGGA R F+ + + L +P+ + L+VG +R F+I R +R+E
Sbjct: 209 MMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV 268
Query: 434 DRQPEFTQLDIELSFTTRDDVMRLIEELL-CYCLNIPTRTFSRISYNDAISLYG 486
PEFT +++ +++ D++ L E L +I +T ++Y D +G
Sbjct: 269 RHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKT--EVTYGDVTLDFG 320
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSL----------QHMIQAFKYGCPP 828
++ + G EIG G ++ +E Q FL+ + + + A ++G PP
Sbjct: 413 FEFFIGGREIGNGFSELNDAEDQAQ--RFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPP 470
Query: 829 HGGIALGIDRLMSILCGTQSIRDVIAFP 856
G+ +GIDR++ + + +IRDVI FP
Sbjct: 471 TAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLD 338
K++KGE S +I IT+L+ +P H+ K KE R + RYLD
Sbjct: 122 KTKKGELS--------------IIPYEITLLSPCLHMLP-HLHFGLKDKET-RYRQRYLD 165
Query: 339 FRFPE-MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTHEPN 395
+ ++ RSK + R FL F+E+ETP + PGGA + F+ +E +
Sbjct: 166 LILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETP-MMNIIPGGAVAKPFITYHNELD 223
Query: 396 KFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455
+ +P+ ++L+VG +DR ++I R +R+E PEFT + +++ D+M
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283
Query: 456 RLIEELL 462
+ E+++
Sbjct: 284 EITEKMV 290
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 821 AFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
A +YG PP G +GIDR+ L + +I++V+ FP
Sbjct: 468 ALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLD 338
K++KGE S +I IT+L+ +P H+ K KE R + RYLD
Sbjct: 122 KTKKGELS--------------IIPYEITLLSPCLHMLP-HLHFGLKDKET-RYRQRYLD 165
Query: 339 FRFPE-MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTHEPN 395
+ ++ RSK + R FL F+E+ETP + PGGA + F+ +E +
Sbjct: 166 LILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETP-MMNIIPGGAVAKPFITYHNELD 223
Query: 396 KFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455
+ +P+ ++L+VG +DR ++I R +R+E PEFT + +++ D+M
Sbjct: 224 MNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 283
Query: 456 RLIEELL 462
+ E+++
Sbjct: 284 EITEKMV 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 821 AFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
A +YG PP G +GIDR+ L + +I++V+ FP
Sbjct: 468 ALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 329 DLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREF 387
D RL +R +D R Q R ++ RE+LAT + F EV TP L + GG+ F
Sbjct: 159 DTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKK-FTEVHTPKLLGAPSEGGSSVF 217
Query: 388 VVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIEL 446
V T+ K Y L QSPQ KQ L+V +R ++I +R E++ R EFT LD+E+
Sbjct: 218 EV-TYFKGKAY-LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEM 275
Query: 447 SFTTR-DDVMRLIEELLCYCLN-IPTR 471
+F +V+ + EL + + +P R
Sbjct: 276 AFEEHYHEVLDTLSELFVFIFSELPKR 302
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 763 DEHLLSSNPLEVRGLH-------------YDLVLNGNEIGGGSIRIHSSEL-QESI-LHF 807
D ++L PLE+R + YD + G EI G+ RIH L QE + H
Sbjct: 371 DFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHG 430
Query: 808 LNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
L+ E L+ F YGCPPH G +G++R++ ++IR FP+
Sbjct: 431 LSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 480
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Query: 317 PFHIKNYNKAKEDLRLKHRYLDF-RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
P K + +++R + RYLD + + RSK L R+F+ R F+EVETP
Sbjct: 151 PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVA-RGFMEVETP- 208
Query: 376 LFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP 433
+ + PGGA R F+ + + L +P+ + L+VG +R F+I R +R+E
Sbjct: 209 MMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV 268
Query: 434 DRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYG 486
PEFT +++ +++ D++ L E L L ++++Y + + +G
Sbjct: 269 RHNPEFTMMELYMAYADYHDLIELTESLF-RTLAQEVLGTTKVTYGEHVFDFG 320
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQ-ESILHFLNIETSSL-------QHMIQAFKYGCPPHG 830
++ + G EIG G ++ +E Q E +N + + + + A +YG PP
Sbjct: 413 FEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTA 472
Query: 831 GIALGIDRLMSILCGTQSIRDVIAFP 856
G+ +GIDR++ + + +IRDVI FP
Sbjct: 473 GLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 329 DLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREF 387
D RL +R +D R Q R ++ RE+LAT + F EV TP L + GG+ F
Sbjct: 162 DTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKK-FTEVHTPKLLGAPSEGGSSVF 220
Query: 388 VVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIEL 446
V T+ K Y L QSPQ KQ L+V +R ++I +R E++ R EFT LD+E+
Sbjct: 221 EV-TYFKGKAY-LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEM 278
Query: 447 SFTTR-DDVMRLIEELLCYCLN-IPTR 471
+F +V+ + EL + + +P R
Sbjct: 279 AFEEHYHEVLDTLSELFVFIFSELPKR 305
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 763 DEHLLSSNPLEVRGLH-------------YDLVLNGNEIGGGSIRIHSSEL-QESI-LHF 807
D ++L PLE+R + YD + G EI G+ RIH L QE + H
Sbjct: 374 DFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHG 433
Query: 808 LNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
L+ E L+ F YGCPPH G +G++R++ ++IR FP+
Sbjct: 434 LSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 483
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 10/186 (5%)
Query: 301 VIASNITVLNKADVNIPFHIKNYNKAKE-DLRLKHRYLDFRF-PEMQHNLRFRSKFLMRT 358
+ S+ L KA +P + Y+ K+ + R + RYLD PE + RS +
Sbjct: 128 IKVSSYEFLTKALRPLP---EKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSM 184
Query: 359 REFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEP--NKFYSLVQSPQQLKQLLMVGSV 416
R +L +H ++EVETP + G A + H Y + LK+L+ VG +
Sbjct: 185 RRYLDSH-GYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLI-VGGL 242
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRI 476
++ ++I R +R+E PEFT L++ ++ D+M+L E L+ + T ++I
Sbjct: 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGT-TKI 301
Query: 477 SYNDAI 482
Y + +
Sbjct: 302 QYGEHL 307
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
++A +YG PP GG+ +G+DRL+ +L + SIRDV+ FP+
Sbjct: 451 LEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 321 KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFK-R 379
+ Y K +D RL +R LD R R +S REFL + + FVE+ TP L
Sbjct: 217 QKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQK-FVEIHTPKLIGCS 275
Query: 380 TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PE 438
+ GG+ F V + + L QSPQ KQ+ ++G + F++ +R E++ R E
Sbjct: 276 SEGGSNIFEVKYFDRKAY--LAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTE 333
Query: 439 FTQLDIELSFTTR-DDVMRLIEELLCYCLN-IPT--------------------RTFSRI 476
F LDIE+ + + ++E+L + + IP R F R+
Sbjct: 334 FEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRL 393
Query: 477 SYNDAISL 484
+Y +AI +
Sbjct: 394 TYKEAIEM 401
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
YD+ + G EI G+ RIH E ++ ++L+ I++F++G PH G +G++R
Sbjct: 463 YDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLER 522
Query: 839 LMSILCGTQSIRDVIAFPK 857
+ + G +IR V FP+
Sbjct: 523 ITMLYLGIPNIRKVTLFPR 541
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 331 RLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFK-RTPGGAREFVV 389
++++R++ R Q L+ RS+ R++ + F E++ PT+ K + GG+ F +
Sbjct: 139 KMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNH-FTEIQPPTIVKTQCEGGSTLFKL 197
Query: 390 PTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSF 448
N+ L QS QL ++ S+ + F + YR E +R R E+ L+ EL F
Sbjct: 198 QYF--NEPAYLTQS-SQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254
Query: 449 TTRDDVMRLIEELLCYC------------------LNIPTRTFSRISYNDAI------SL 484
+ +D++ +E+L+C L +PTR F R++Y DAI +
Sbjct: 255 ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGI 314
Query: 485 YGSDKP 490
DKP
Sbjct: 315 LNKDKP 320
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 780 DLVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
DL++ G EI GGS+RI + + + Q KYG PHGG LG++R
Sbjct: 371 DLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVER 430
Query: 839 LMSILCGTQSIRDVIAFPK 857
L+ L G IR V +P+
Sbjct: 431 LVMWLLGEDHIRKVCLYPR 449
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 321 KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFK-R 379
+N +A +L L +R+L R P+ ++ + +M RE+L + EV P L
Sbjct: 108 ENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKD-GWHEVFPPILVTGA 166
Query: 380 TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PE 438
GGA F + +K+ L QS Q + + G +++ + + +R E +R R E
Sbjct: 167 VEGGATLFKLKYF--DKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRTRRHLTE 223
Query: 439 FTQLDIELSFTTRDDVMRLIEELLCY---------------------CLNIPTRTFSRIS 477
F L++E ++ D+M++ EEL+ Y L F RIS
Sbjct: 224 FWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRIS 283
Query: 478 YNDAISLYGSDKPDLRY-------DCKIMIAIKEQPPWPSGYPTRL 516
Y++AI + S ++ + + +++ ++P + GYP +
Sbjct: 284 YDEAIDILQSKGVNVEWGDDLGADEERVLTEEFDRPFFVYGYPKHI 329
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 823 KYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
+YG PH G LG++RL++ + IR FP+
Sbjct: 393 RYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPR 427
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-------PGGAREFVVPTHEPNKFYS 399
NL R+ + R F A R +EVETP + + T P R FV P H
Sbjct: 18 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFETR-FVGPGHSQGMNLW 75
Query: 400 LVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIE 459
L+ SP+ + L+V FQ+ R +R+E PEFT L+ +M ++
Sbjct: 76 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVD 135
Query: 460 ELLCYCLNIPTRTFSRISYNDAISLY------GSDKPDLR 493
+LL L+ P +SY A Y +DK LR
Sbjct: 136 DLLQQVLDCPAA--ESLSYQQAFLRYLEIDPLSADKTQLR 173
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 816 QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855
Q++I+A K G P G+ALG+DRL+ + G +++ +VIAF
Sbjct: 284 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAF 323
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-------PGGAREFVVPTHEPNKFYS 399
NL R+ + R F A R +EVETP + + T P R FV P H
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFETR-FVGPGHSQGMNLW 92
Query: 400 LVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIE 459
L+ SP+ + L+V FQ+ R +R+E PEFT L+ +M ++
Sbjct: 93 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVD 152
Query: 460 ELLCYCLNIPTRTFSRISYNDAISLY------GSDKPDLR 493
+LL L+ P +SY A Y +DK LR
Sbjct: 153 DLLQQVLDCPAA--ESLSYQQAFLRYLEIDPLSADKTQLR 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 816 QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855
Q++I+A K G P G+ALG+DRL+ + G +++ +VIAF
Sbjct: 301 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAF 340
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 780 DLVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
DL++ G EI GGS+RI + + I+ + YG PHGG LG++R
Sbjct: 350 DLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLER 409
Query: 839 LMSILCGTQSIRDVIAFPKGFG 860
+ L T IRDV +P+ G
Sbjct: 410 FICWLTNTNHIRDVCLYPRFVG 431
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 368 FVEVETPTLFK-RTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426
+VEV PTL + + GG+ F + F L QS QL + ++ F IA+ Y
Sbjct: 151 YVEVAPPTLVQTQVEGGSTLFNLDYFGEQSF--LTQS-SQLYLETCIPTLGDVFCIAQSY 207
Query: 427 RDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLN------------------ 467
R E +R R E+ ++ E F T DD+M IEEL+C ++
Sbjct: 208 RAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPK 267
Query: 468 --IPTRTFSRISYNDAI 482
P R F R+ Y DAI
Sbjct: 268 FQPPERPFLRMEYKDAI 284
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 780 DLVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
DL++ G EI GGS+RI + + I+ + YG PHGG LG++R
Sbjct: 352 DLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLER 411
Query: 839 LMSILCGTQSIRDVIAFPKGFG 860
+ L T IRDV +P+ G
Sbjct: 412 FICWLTNTNHIRDVCLYPRFVG 433
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 368 FVEVETPTLFK-RTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426
+VEV PTL + + GG+ F + F L QS QL + ++ F IA+ Y
Sbjct: 153 YVEVAPPTLVQTQVEGGSTLFNLDYFGEQSF--LTQS-SQLYLETCIPTLGDVFCIAQSY 209
Query: 427 RDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLN------------------ 467
R E +R R E+ ++ E F T DD+M IEEL+C ++
Sbjct: 210 RAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPK 269
Query: 468 --IPTRTFSRISYNDAI 482
P R F R+ Y DAI
Sbjct: 270 FQPPERPFLRMEYKDAI 286
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 408 KQLLMVGSVDRYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464
KQL + +++ F ++ R ES R D EFTQLD E+ DVMRLIEEL+ Y
Sbjct: 80 KQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEGAKMKDVMRLIEELI-Y 138
Query: 465 CL----------NIP-TRTFSRISYNDAISLYGSDK 489
L P R F Y D + +GSD+
Sbjct: 139 GLFRKAEEWTGREFPRARHFKVYDYKDILEEFGSDE 174
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 778 HYDLVL--NGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYG-CPPHGGIAL 834
+YDL+L E+ G R E + + ++ S + ++ + G P G +
Sbjct: 204 NYDLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAGAGI 263
Query: 835 GIDRLMSILCGTQSIRDVIAFPK 857
G++RL+ + G + I +V FP+
Sbjct: 264 GVERLVRFIVGAKHIAEVQPFPR 286
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-------PGGAREFVVPTHEPNKFYS 399
NL R+ + R F A R +EVETP + + T P R FV P H
Sbjct: 16 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLFPFETR-FVGPGHSQGINLY 73
Query: 400 LVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIE 459
L+ SP+ + L+ FQ+ R +R+E PEFT L+ + D+ RL+
Sbjct: 74 LMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEW---YRPHYDMYRLMN 130
Query: 460 EL 461
E+
Sbjct: 131 EV 132
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 816 QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855
Q+++ A G P G+ALG+DRL+ + G +S+ DVIAF
Sbjct: 282 QNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAF 321
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 408 KQLLMVGSVDRYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464
KQL + + + F ++ R ES + D EFTQLD E+ +D+MRLIE L+ Y
Sbjct: 80 KQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLV-Y 138
Query: 465 CL----------NIP-TRTFSRISYNDAISLYGSDK 489
L P T+ F Y++ + +GSD+
Sbjct: 139 GLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDE 174
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 20/176 (11%)
Query: 692 VSWGKQEDVLSLL-----GMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS 746
V K ED++ L+ G+ R K + EF K F +F + SD
Sbjct: 121 VERAKMEDIMRLIERLVYGLFR------KAEEWTGREFPKTKRFEVFEYSEVLEEFGSDE 174
Query: 747 GTLESAHHPFTQPHPEDEHLLSSNPLEVRGL--HYDLVL--NGNEIGGGSIRIHSSELQE 802
+ PF + E EV G +YDL+L E+ G R E
Sbjct: 175 KASQEMEEPFWIINIPREFY----DREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIV 230
Query: 803 SILHFLNIETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
+ + + S + ++ K G P G +G++RL+ + G + I +V FP+
Sbjct: 231 AKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPR 286
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
G T ++DVG G G ++ ++AK+ S I +++D ++G
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKY--------PSINAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
F D K D I+I+W+ DE +K L C L +G +I+ + +
Sbjct: 255 MF---DGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
PGKT LD+G G GR S YL A +D +D ++++ I A E +K + LD + +
Sbjct: 33 PGKT--LDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI--ANVERIKSIENLDNLH-TRV 86
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFI 216
D + +YD I VLMF+
Sbjct: 87 VDLNNLTFDRQYDFILSTVVLMFL 110
>pdb|3Q3Y|A Chain A, Complex Structure Of Hevb Ev93 Main Protease 3c With
Compound 1 (Ag7404)
pdb|3Q3Y|B Chain B, Complex Structure Of Hevb Ev93 Main Protease 3c With
Compound 1 (Ag7404)
pdb|3RUO|A Chain A, Complex Structure Of Hevb Ev93 Main Protease 3c With
Rupintrivir (Ag7088)
pdb|3RUO|B Chain B, Complex Structure Of Hevb Ev93 Main Protease 3c With
Rupintrivir (Ag7088)
Length = 191
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 7 EFAVAMMKRNASTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 59
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA R+ VEV L
Sbjct: 60 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--REEVEVNEAVL 104
>pdb|3Q3X|A Chain A, Crystal Structure Of The Main Protease (3c) From Human
Enterovirus B Ev93
pdb|3Q3X|B Chain B, Crystal Structure Of The Main Protease (3c) From Human
Enterovirus B Ev93
Length = 191
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 7 EFAVAMMKRNASTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 59
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA R+ VEV L
Sbjct: 60 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--REEVEVNEAVL 104
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 138 VLDVGAGIGRI--SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
VLDVG G G + + L A H + L+E + E+A+ D D+ F
Sbjct: 186 VLDVGGGNGGMLAAIALRAPHL-RGTLVELAGP-AERARRRF-ADAGLADRVTVAEGDFF 242
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
KP L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 243 KP--LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
PGKT LD+G G GR S YL A +D +D ++++ I A E +K + LD + +
Sbjct: 34 PGKT--LDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI--ANVERIKSIENLDNLH-TRV 87
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFI 216
D + +YD I VLMF+
Sbjct: 88 VDLNNLTFDGEYDFILSTVVLMFL 111
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCXYINEKYGAHTHGIDI 86
Query: 166 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 225
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNXANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 226 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 278
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 279 KSE 281
S+
Sbjct: 202 VSK 204
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 166 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 225
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 226 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 278
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 279 KSE 281
S+
Sbjct: 202 VSK 204
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 166 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 225
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 226 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 278
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 279 KSE 281
S+
Sbjct: 202 VSK 204
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 138 VLDVGAGIGRISKYLLAKHFDK-IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ--- 193
+LD+GAG G +S +L+ K+ + L++ S K +E AK N+ ++
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---------NLKVKYIE 98
Query: 194 -DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
D+ D KYD++ + + DED + IL ++GI I D V
Sbjct: 99 ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 166 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 225
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILALSLENKNKLF 142
Query: 226 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 278
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 279 KSE 281
S+
Sbjct: 202 VSK 204
>pdb|3ZZ3|A Chain A, Crystal Structure Of 3c Protease Mutant (N126y) Of
Coxsackievirus B3
pdb|3ZZ3|B Chain B, Crystal Structure Of 3c Protease Mutant (N126y) Of
Coxsackievirus B3
Length = 184
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 6 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 58
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 59 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 103
>pdb|3ZYD|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
pdb|3ZZ5|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 74
pdb|3ZZ6|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Michael Receptor Inhibitor 75
pdb|3ZZ7|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 81
pdb|3ZZ8|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 82
pdb|3ZZ9|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 83
pdb|3ZZA|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 84
pdb|3ZZB|A Chain A, Crystal Structure Of 3c Protease Of Coxsackievirus B3
Complexed With Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor 85
Length = 184
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 6 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 58
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 59 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 103
>pdb|2ZU1|A Chain A, Crystal Structure Of Cvb3 3c Protease Mutant C147a
pdb|2ZU1|B Chain B, Crystal Structure Of Cvb3 3c Protease Mutant C147a
Length = 183
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 5 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 57
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 58 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 102
>pdb|2ZTX|A Chain A, Complex Structure Of Cvb3 3c Protease With Epdtc
pdb|2ZTY|A Chain A, Crystal Structure Of 3c Protease From Cvb3 In Space Group
C2
pdb|2ZTZ|A Chain A, Crystal Structure Of 3c Protease From Cvb3 In Space Group
P21
pdb|2ZTZ|B Chain B, Crystal Structure Of 3c Protease From Cvb3 In Space Group
P21
pdb|2ZU3|A Chain A, Complex Structure Of Cvb3 3c Protease With Tg-0204998
Length = 183
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 5 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 57
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 58 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 102
>pdb|2VB0|A Chain A, Crystal Structure Of Coxsackievirus B3 Proteinase 3c
Length = 183
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 5 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 57
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 58 DAKELVDKDGTNLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 102
>pdb|3ZZC|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3 Complexed With Alpha,
Beta-Unsaturated Ethyl Ester Inhibitor 83
pdb|3ZZD|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3 Complexed With Alpha,
Beta-Unsaturated Ethyl Ester Inhibitor 85
Length = 183
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 5 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 57
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 58 DAKELVDKDGANLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 102
>pdb|3ZZ4|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3
pdb|3ZZ4|B Chain B, Crystal Structure Of 3c Protease Mutant (T68a And N126y)
Of Coxsackievirus B3
Length = 184
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 6 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 58
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 59 DAKELVDKDGANLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 103
>pdb|3ZYE|A Chain A, Crystal Structure Of 3c Protease Mutant (T68a) Of
Coxsackievirus B3
Length = 184
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
+F + K N VK+E GEF+ + +++ W +L + ++N +V +
Sbjct: 6 EFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVL------- 58
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
AKE + L+ ++ N +FR R FLA ++ VEV L
Sbjct: 59 DAKELVDKDGANLELTLLKLNRNEKFRD-----IRGFLA--KEEVEVNEAVL 103
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
G ++DVG G G + +++K+ + K I +++D +VG
Sbjct: 200 GLKSLVDVGGGTGAVINTIVSKY--------PTIKGINFDLPHVIEDAPSYPGVEHVGGD 251
Query: 194 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
F ++I K D ++++W+ DE +KFL C + L NG +I+ + +
Sbjct: 252 MF----VSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 299
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 104 LNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDL 162
++GYS L + + L L P +VL+ G GIG + L + D +I
Sbjct: 7 VHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITS 66
Query: 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-EDI 221
++ S + +E+A+E K+ K K I ED + +D I++ +VL + E+
Sbjct: 67 IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSS--FDHIFVCFVLEHLQSPEEA 124
Query: 222 IKFLNLCKQILNKNGIIII 240
+K L K++L G I +
Sbjct: 125 LKSL---KKVLKPGGTITV 140
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
FKP L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 242 FKP--LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 114 DIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 161
+I SN +F L ++ G +++DVG GIG IS +L KHF ++D
Sbjct: 169 EIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAML-KHFPELD 216
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194
+ + LD+GAG G +++L+ K ID L + ++ + E + L V
Sbjct: 83 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP--VQNKRNEEYNNQAGLADNITVKYGS 140
Query: 195 FK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
F P + N YD IW Q F+ D +K C ++L G+ I D
Sbjct: 141 FLEIPCEDN-SYDFIWSQ--DAFLHSPDKLKVFQECARVLKPRGVXAITD 187
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 25/114 (21%)
Query: 134 GKTRVLDVGAGIGR-----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
G + ++DVG G GR ISKY L K + DL +++++ L
Sbjct: 209 GISTLVDVGGGSGRNLELIISKYPLIKGIN-FDL------------PQVIENAPPLSGIE 255
Query: 189 NVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+VG F P+ D ++ V DE I+FL+ C + L+ NG +II
Sbjct: 256 HVGGDXFASVPQG-----DAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVII 304
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 134 GKTRVLDVGAGIGR-----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
G + ++DVG G GR ISKY L K + DL +++++ L
Sbjct: 209 GISTLVDVGGGSGRNLELIISKYPLIKGIN-FDL------------PQVIENAPPLSGIE 255
Query: 189 NVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
+VG F P+ + + W DE I+FL+ C + L+ NG +II + +
Sbjct: 256 HVGGDMFASVPQGDAMILKAVCHNWS-----DEKCIEFLSNCHKALSPNGKVIIVEFILP 310
Query: 247 GVKNEYDDEDSSVVRSL 263
N E+S +V +L
Sbjct: 311 EEPN--TSEESKLVSTL 325
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP-TRTF--- 473
R F+I CYR ES EFT L++ T ++ + +E++ + L R F
Sbjct: 171 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELV 230
Query: 474 --SRISYNDAISLYGSD 488
S + Y D + + D
Sbjct: 231 TESSVVYGDTVDVMKGD 247
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP-TRTF--- 473
R F+I CYR ES EFT L++ T ++ + +E++ + L R F
Sbjct: 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELV 210
Query: 474 --SRISYNDAISLYGSD 488
S + Y D + + D
Sbjct: 211 TESSVVYGDTVDVMKGD 227
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC 181
RVLD+G G G+ S +L + F+ + L++ S + +E A+E+ +K+
Sbjct: 57 RVLDLGGGTGKWSLFLQERGFEVV-LVDPSKEXLEVAREKGVKNV 100
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 138 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197
VL+ G G G ++ LL L ++ IE ++E + +KL K +++ DF
Sbjct: 49 VLEFGVGTGNLTNKLL--------LAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS 100
Query: 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD 253
++ D I + + D++ + Q+LNK G I+ D + + ++ YD
Sbjct: 101 FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYD 155
>pdb|2J6J|A Chain A, Prefusion Form Of The Vesicular Stomatitis Virus
Glycoprotein G Ectodomain
Length = 422
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 283 GEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFP 342
G + +LW+DW I N + + P ++ + DL L + F P
Sbjct: 349 GTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHP 408
Query: 343 EMQ 345
+Q
Sbjct: 409 HIQ 411
>pdb|2CMZ|A Chain A, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|B Chain B, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|C Chain C, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
Length = 423
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 283 GEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFP 342
G + +LW+DW I N + + P ++ + DL L + F P
Sbjct: 349 GTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHP 408
Query: 343 EMQ 345
+Q
Sbjct: 409 HIQ 411
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194
+VLD+G G GR S YL +D D E S F+ + KE K + + + D
Sbjct: 123 KVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKE-------KENLNISTALYD 175
Query: 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ YD I V F+ E + + K+ N G +I
Sbjct: 176 INAANIQENYDFIVSTVVFXFLNRERVPSIIKNXKEHTNVGGYNLI 221
>pdb|1S9A|A Chain A, Crystal Structure Of 4-chlorocatechol 1,2-dioxygenase From
Rhodococcus Opacus 1cp
pdb|1S9A|B Chain B, Crystal Structure Of 4-chlorocatechol 1,2-dioxygenase From
Rhodococcus Opacus 1cp
pdb|3O32|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3O32|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3O5U|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Protocatechuate
pdb|3O5U|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Protocatechuate
pdb|3O6J|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Hydroxyquinol
pdb|3O6J|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Hydroxyquinol
pdb|3O6R|A Chain A, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Pyrogallol
pdb|3O6R|B Chain B, Crystal Structure Of 4-Chlorocatechol Dioxygenase From
Rhodococcus Opacus 1cp In Complex With Pyrogallol
Length = 257
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 503 KEQPPWPSGYPTRLPRRAGEPGFDSR--------RGPSFFGSVLGVW-----GALSLMSS 549
KE P +G P LP RA EPG R G G+V+ VW G S S
Sbjct: 80 KEGAPLLTGKPATLPMRADEPGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSP 139
Query: 550 YFIREYCYQG 559
+Y +G
Sbjct: 140 ALPDQYLLRG 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,142,448
Number of Sequences: 62578
Number of extensions: 1178073
Number of successful extensions: 3477
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3355
Number of HSP's gapped (non-prelim): 113
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)