BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8372
(883 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3KRD0|SYDM_RAT Aspartate--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Dars2
PE=2 SV=1
Length = 652
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A +LN A +PF IK++ K E LRL++RYLD R +MQHNLR RS+ +M+ R
Sbjct: 139 EIKAKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSSQMQHNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L T FV++ETPTLFKRTPGGA+EF+VP+ EP +FYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCTLHGFVDIETPTLFKRTPGGAKEFLVPSREPGRFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL----NIPTRTFSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + L+E LL Y + F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQHLVEGLLHYSWPEDKDPLVAPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 140/223 (62%), Gaps = 6/223 (2%)
Query: 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLP 721
W++ K + + E ++E D+++++ G+ E SLLG +R E + T
Sbjct: 409 WSSPFAKFITEEERLELTRLMEIQEDDMVLLTAGQHEKACSLLGKLRLECADLL--ETRG 466
Query: 722 LEFDNPKSFSIFWVVDFPLFLPSDSG--TLESAHHPFTQPHPEDEHLLSSNPLEVRGLHY 779
L +P FS WV+DFPLFL + LESAHHPFT PHP D HLL + P +VRG HY
Sbjct: 467 LALRDPALFSFLWVLDFPLFLAKEESPTELESAHHPFTAPHPGDIHLLYTEPEKVRGQHY 526
Query: 780 DLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
DLVLNGNEIGGGSIRIH ++LQ IL L + L H++QA YG PPHGGIALG+DR
Sbjct: 527 DLVLNGNEIGGGSIRIHDAQLQRYILETLLKEDVKLLSHLLQALDYGAPPHGGIALGLDR 586
Query: 839 LMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDI-PEAERNYY 880
L+ ++ G SIRDVIAFPK + G D +S AP + PE + Y+
Sbjct: 587 LVCLVTGAPSIRDVIAFPKSYRGHDLMSNAPDTVSPEDLKPYH 629
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQVPNIYRTS 65
+ R++TCG LR S + + VTLCGW+Q +R + F +LRD +G VQ+++P + R
Sbjct: 46 FVARTNTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDCHGLVQILIPQDESAASVR-R 104
Query: 66 TLASLPI 72
TL P+
Sbjct: 105 TLCEAPV 111
>sp|A6QPU5|SYDM_BOVIN Aspartate--tRNA ligase, mitochondrial OS=Bos taurus GN=DARS2 PE=2
SV=1
Length = 651
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 11/207 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 137 EIKVKTAKLLNSCK-KLPFEIKDFMKKTETLRLQYRYLDLRSVQMQYNLRLRSQMVMKMR 195
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV+VETPTLFKRTPGGA+EFV+P+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 196 EYLCNLHGFVDVETPTLFKRTPGGAKEFVIPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 255
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-------LNIPTRT 472
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + V LIE LL Y L +P
Sbjct: 256 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLLQYSWPSDKDPLVVP--- 312
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F + + +A++ YG+DKPD R+ KI+
Sbjct: 313 FPSMPFAEALASYGTDKPDTRFGMKIV 339
Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 633 KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVV 692
K I + A FN+ ++ + ++ + W + + K + + +E D++++
Sbjct: 379 KDIESIRKFAADHFNE-EVLPIFLKTNENWNSPVAKFIMEEQGLGLVKLLETQEEDVVLL 437
Query: 693 SWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGT--LE 750
+ G+ + SL+G +R E + + L +P FS WVVDFPLFLP + LE
Sbjct: 438 TAGEHKKACSLMGKLRLECADLLEARGVVLR--DPALFSFLWVVDFPLFLPKEENPQELE 495
Query: 751 SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLN 809
SAHHPFT PHP D HLL + P +VR HYDLVLNGNEIGGGSIRIH+SELQ +L L
Sbjct: 496 SAHHPFTAPHPSDIHLLYTEPHKVRSQHYDLVLNGNEIGGGSIRIHNSELQHCVLDTVLK 555
Query: 810 IETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAP 869
+ L H++QA YG PPHGGIALG+DRLM ++ G SIRDVIAFPK F G D +S AP
Sbjct: 556 EDVKLLSHLLQALDYGAPPHGGIALGLDRLMCLVTGAPSIRDVIAFPKSFRGHDLMSNAP 615
Query: 870 CDIPEAERNYYNLK 883
IP E Y+++
Sbjct: 616 DSIPPEELKPYHIQ 629
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQ 57
+ R++TCG LR S + + VTLCGW+Q +R ++F +LRD +G VQV++P +
Sbjct: 44 FVARTNTCGELRSSHLGQEVTLCGWIQFRRQNIFLVLRDFHGLVQVVIPQDE 95
>sp|Q8BIP0|SYDM_MOUSE Aspartate--tRNA ligase, mitochondrial OS=Mus musculus GN=Dars2 PE=2
SV=1
Length = 653
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IK++ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 139 EIKVKTAELLN-ACKKLPFEIKDFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 197
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 198 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 257
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL---NIPTRT-FSR 475
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + RL+E LL Y P T F
Sbjct: 258 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVEQTGIQRLVEGLLQYSWPGDKDPLVTPFPS 317
Query: 476 ISYNDAISLYGSDKPDLRYDCKIM 499
+++ +A++ YG+DKPD R+ KI+
Sbjct: 318 MTFAEALATYGTDKPDTRFGMKIV 341
Score = 199 bits (507), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 142/225 (63%), Gaps = 7/225 (3%)
Query: 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE-SHKIKVKNTL 720
W++ K + + E ++E D+++++ G+ E SLLG +R E + ++++ +
Sbjct: 409 WSSPFAKFIMEEERLELARSMEIQEEDIVLLTAGEHEKACSLLGKLRLECADLLEMRGAV 468
Query: 721 PLEFDNPKSFSIFWVVDFPLFLPSDSG--TLESAHHPFTQPHPEDEHLLSSNPLEVRGLH 778
+P FS WVVDFPLFL + LESAHHPFT P+ D HLL + P +VRG H
Sbjct: 469 ---LRDPAVFSFLWVVDFPLFLAKEESPTELESAHHPFTAPNSSDIHLLYTEPEKVRGQH 525
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSSLQHMIQAFKYGCPPHGGIALGID 837
YDLVLNGNEIGGGS+RIH ++LQ IL L + L H++QA YG PPHGGIALG+D
Sbjct: 526 YDLVLNGNEIGGGSVRIHDAQLQRYILETLLKEDVKLLSHLLQALDYGAPPHGGIALGLD 585
Query: 838 RLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNL 882
RL+ ++ G SIRDVIAFPK + G+D +S AP + E Y++
Sbjct: 586 RLVCLVTGAPSIRDVIAFPKSYRGQDLMSNAPDSVSPEELKPYHI 630
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQ 57
+ R++TCG LR S + + VTLCGW+Q +R + F +LRD +G VQ+++P +
Sbjct: 46 FVARTNTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDCHGLVQILIPQDE 97
>sp|Q6PI48|SYDM_HUMAN Aspartate--tRNA ligase, mitochondrial OS=Homo sapiens GN=DARS2 PE=1
SV=1
Length = 645
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 146/209 (69%), Gaps = 15/209 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ +LN A +PF IKN+ K E LRL++RYLD R +MQ+NLR RS+ +M+ R
Sbjct: 140 EIKVKTAELLN-ACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMR 198
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419
E+L FV++ETPTLFKRTPGGA+EF+VP+ EP KFYSL QSPQQ KQLLMVG +DRY
Sbjct: 199 EYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRY 258
Query: 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY---------CLNIPT 470
FQ+ARCYRDE +RPDRQPEFTQ+DIE+SF + + LIE LL Y + PT
Sbjct: 259 FQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPT 318
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
TF+ + ++ YG+DKPD R+ KI+
Sbjct: 319 MTFAEV-----LATYGTDKPDTRFGMKII 342
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 153/255 (60%), Gaps = 8/255 (3%)
Query: 633 KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTK-ILPDLNVEEFRNKENLEEGDLIV 691
K I +N A FN ++ V + + W + + I+ +E R E EE D+++
Sbjct: 382 KDIESIRNFAADHFNQ-EILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEE-DVVL 439
Query: 692 VSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGT--L 749
++ G+ SLLG +R E + T + +P FS WVVDFPLFLP + L
Sbjct: 440 LTAGEHNKACSLLGKLRLECADLL--ETRGVVLRDPTLFSFLWVVDFPLFLPKEENPREL 497
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FL 808
ESAHHPFT PHP D HLL + P + R HYDLVLNGNEIGGGSIRIH++ELQ IL L
Sbjct: 498 ESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLL 557
Query: 809 NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGA 868
+ L H++QA YG PPHGGIALG+DRL+ ++ G+ SIRDVIAFPK F G D +S
Sbjct: 558 KEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDLMSNT 617
Query: 869 PCDIPEAERNYYNLK 883
P +P E Y+++
Sbjct: 618 PDSVPPEELKPYHIR 632
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQ 57
+ R++TCG LR S + + VTLCGW+Q +R + F +LRD G VQVI+P +
Sbjct: 47 FVVRTNTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDE 98
>sp|Q73MC2|SYD_TREDE Aspartate--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=aspS PE=3 SV=1
Length = 590
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 149/209 (71%), Gaps = 10/209 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A I VL+K++V +PF I A EDLRLK+RYLD R MQ ++ RSKF R
Sbjct: 98 EVKALKIEVLSKSEV-LPFQIDEKTNANEDLRLKYRYLDLRSKAMQEHIMLRSKFTFAVR 156
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFL T +DF+E+ETPT K TP GAR+++VP+ P KFY+L QSPQ KQ+LMV D+
Sbjct: 157 EFL-TSKDFLEIETPTFIKSTPEGARDYLVPSRLYPGKFYALPQSPQIYKQILMVSGFDK 215
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPTRT 472
YFQIARCYRDE R DRQPEFTQ+D+E+SF +R+DV+ L E ++ Y +++P +T
Sbjct: 216 YFQIARCYRDEDARGDRQPEFTQIDLEMSFASREDVLSLTEGMMQYAFKKSINVDLP-KT 274
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIMIA 501
F RISY++AI +YG+DKPDLR++ K+ A
Sbjct: 275 FERISYDEAIDIYGTDKPDLRFEMKMQDA 303
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 138/269 (51%), Gaps = 14/269 (5%)
Query: 620 RILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKV-QDSLEWTNKLTKILPDLNVEEF 678
+ L++ ++ ++K E A K + ++ +KV + + ++K E
Sbjct: 326 KALVVKGQAEAYSRKKIEELEAAAKIYKAKGLAWIKVTEGGAKLEGGVSKFFEGKEAE-I 384
Query: 679 RNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDF 738
+K E+GDLI+ K + + LG +RS+ K L NP F W+VDF
Sbjct: 385 CSKLGAEKGDLILFVADKYKIACTALGAVRSKLGK-------DLGLLNPAEFKFAWIVDF 437
Query: 739 PLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS 797
PLF + + AHH F+ P + + NP V+G YDLVLNG E+ GSIRIH+
Sbjct: 438 PLFEWNEEENKWDPAHHMFSAPQEKYIATMEENPEPVKGDLYDLVLNGYEVASGSIRIHN 497
Query: 798 SELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853
ELQ+ I + + S + + +AFKYG PPHGGIA G+DR++ I+ G SI++VI
Sbjct: 498 PELQKRIFKIVGFDESEAEKKFGFLTEAFKYGAPPHGGIAPGLDRIVMIMAGETSIKEVI 557
Query: 854 AFPKGFGGKDHLSGAPCDIPEAERNYYNL 882
AFPK + +P ++ + + + +L
Sbjct: 558 AFPKNSFAVSPMDDSPSEVDQKQLDELHL 586
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
R+ TCG L KTV L GW+ +R F LRD YG QV+V
Sbjct: 6 RTVTCGGLNKDFAGKTVVLNGWIHRKRDHGGITFLNLRDRYGLTQVVV 53
>sp|Q3AA17|SYD_CARHZ Aspartate--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=aspS PE=3 SV=1
Length = 592
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 139/205 (67%), Gaps = 8/205 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV AS + VLNKA PF+I++ E +RL++RYLD R PEMQ L R K R
Sbjct: 96 EVYASKVEVLNKAKTP-PFYIEDGIDVDEQVRLRYRYLDLRRPEMQRALELRHKAAKAVR 154
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL H F E+ETP L K TP GAR+F+VP+ P KFY+L QSPQ KQ+LMV ++R
Sbjct: 155 DFLDRH-GFWEIETPMLTKSTPEGARDFLVPSRLNPGKFYALPQSPQIFKQILMVAGMER 213
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRT-F 473
YFQI RC+RDE R DRQPEFTQ+DIE+SF R+D+M L+EE++ Y + + +T F
Sbjct: 214 YFQIVRCFRDEDLRADRQPEFTQIDIEMSFIDREDIMSLMEEMIAYVFKEAIGVEVKTPF 273
Query: 474 SRISYNDAISLYGSDKPDLRYDCKI 498
RISY +A+ YG+DKPDLR+ +I
Sbjct: 274 KRISYQEAMLKYGTDKPDLRFGLEI 298
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 128/249 (51%), Gaps = 21/249 (8%)
Query: 626 KDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLE 685
KDLD K + N K + ++ +V+ + + K + + N E
Sbjct: 337 KDLDDLTKFVG---NFGAKGLAYLILTPEEVK------SPIAKFFKEEELRALINALQGE 387
Query: 686 EGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPS 744
GD++ K E LG +R + + L L +N F+ WV+DFPL +
Sbjct: 388 PGDILFFVADKPEVAAQALGNLR-----LHLAERLGLIPEN--EFNFLWVIDFPLLEYDN 440
Query: 745 DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESI 804
+ + HHPFT P ED L+ NPL VR YD+VLNG EIGGGSIRIH ++QE +
Sbjct: 441 EEKRFVAMHHPFTAPMDEDLPLMDENPLLVRAKAYDMVLNGVEIGGGSIRIHRRDIQEKM 500
Query: 805 LHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860
+ + + M++AF+YG PPHGGIA G DRL+ ++ G +SIRDVIAFPK
Sbjct: 501 FKLIGLSEEEAKEKFGFMLEAFEYGTPPHGGIAFGFDRLVMLMAGRESIRDVIAFPKTQS 560
Query: 861 GKDHLSGAP 869
D + GAP
Sbjct: 561 ATDLMVGAP 569
Score = 39.7 bits (91), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSH CG LR + V L GW+Q +R +F LRD G VQV+
Sbjct: 4 RSHYCGELRKEHAGQKVILNGWVQRRRDHGGLIFVDLRDRSGIVQVV 50
>sp|Q9RUN7|SYD_DEIRA Aspartate--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=aspS PE=3 SV=1
Length = 577
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 136/209 (65%), Gaps = 10/209 (4%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKF 354
GL EVIAS + VLN A PF + ED+RLK+RYLD R PEMQ L RSK
Sbjct: 87 GLADFEVIASRVKVLNAAKTP-PFELDKGESVAEDIRLKYRYLDLRRPEMQRALMLRSKA 145
Query: 355 LMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMV 413
+ EFL F++VETP L K TP GAR+F+VP+ P +FY+L QSPQ KQLLM+
Sbjct: 146 VTAVTEFLDAE-GFIQVETPMLTKSTPEGARDFLVPSRLNPGEFYALPQSPQLFKQLLMI 204
Query: 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LN 467
DRY+Q+ARC+RDE R DRQP+FTQLD+E+SF +DDV+ + E LL + +
Sbjct: 205 AGFDRYYQLARCFRDEDLRADRQPDFTQLDMEMSFVEQDDVLEVQERLLAHVFRRVLDVE 264
Query: 468 IPTRTFSRISYNDAISLYGSDKPDLRYDC 496
+P F R+SY DA+ YGSDKPDLR+D
Sbjct: 265 LPL-PFPRMSYFDAMDRYGSDKPDLRFDS 292
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 145/279 (51%), Gaps = 19/279 (6%)
Query: 604 FRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWT 663
FR +S V ++L+ P + T K+I E + +AK+ N +D +T
Sbjct: 301 FRGGEFAAFASAPSV-KVLVAP---ELTRKQIDELERVAKQ--NGAGGLAWLRRDGEGFT 354
Query: 664 NKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE 723
++K + + + + + +G ++ + G+ + ++ LG +R + +++ L
Sbjct: 355 GGISKFVGGI-APQLIEQTGVAQGGTLLFAAGEWKKAVTALGAVR-----LALRDLFDLA 408
Query: 724 FDNPKSFSIFWVVDFP-LFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPL-EVRGLHYDL 781
P+ F + WVVDFP L DS + HHPFT PHP D L + E+R YDL
Sbjct: 409 AGGPQ-FHVSWVVDFPQLEFDEDSQSWTYMHHPFTAPHPGDVALFGTERQGEMRAQAYDL 467
Query: 782 VLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGID 837
V+NG EIGGGS+RIH E+Q + + + + + A +YG PPHGGIA G D
Sbjct: 468 VMNGFEIGGGSVRIHDPEVQAKMFQAIGFSEEAAREKFGFFLDALEYGTPPHGGIAWGFD 527
Query: 838 RLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
RL+ ++ G SIR+VIAFPK G D ++ AP + +A+
Sbjct: 528 RLLMLMSGAGSIREVIAFPKNNRGADLMAQAPSPVEDAQ 566
>sp|B2V713|SYD_SULSY Aspartate--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=aspS PE=3 SV=1
Length = 602
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 140/206 (67%), Gaps = 8/206 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + +LN + +PF I++ K E++RLK+RYLD R P MQ N+ R + R
Sbjct: 103 EVAGEELLILNTSKA-LPFPIEDNIKVSEEVRLKYRYLDLRRPSMQRNIILRHEVYQAVR 161
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
EFLA + F+EVETP L K TP GAR+F+VP+ E KFY+L QSPQ KQ+LMV ++R
Sbjct: 162 EFLAGN-GFIEVETPMLTKSTPEGARDFLVPSRLEKGKFYALPQSPQLFKQILMVAGLER 220
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRT-F 473
YFQIA+C+RDE R DRQPEFTQ+D+E+SF T DDVM L E L+ Y L I + F
Sbjct: 221 YFQIAKCFRDEDLRADRQPEFTQIDLEMSFVTEDDVMTLAESLIQYVYKKVLGIDIKIPF 280
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
R+SY +AI+ YG+DKPDLRY +++
Sbjct: 281 RRMSYEEAINKYGTDKPDLRYGLELI 306
Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 145/265 (54%), Gaps = 22/265 (8%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690
+ K+I E AKK F M+ VK+++ E T+ + K + ++ + + ++GDL+
Sbjct: 342 SRKEIDELTEYAKK-FGAKGMAWVKLENG-EATSPILKFFTEEQKQKLFSLMDAKDGDLL 399
Query: 691 VVSWGKQEDVLSLLGMIRSE-SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGT 748
+ K++ +LG +R + K+ + + LEF WVVDFPLF +
Sbjct: 400 IFIADKKDITHKVLGFLRKHIAEKMNLIDNSKLEF--------LWVVDFPLFEWDEEENR 451
Query: 749 LESAHHPFTQPHPED-----EHLLSSN-PLEVRGLHYDLVLNGNEIGGGSIRIHSSELQE 802
L + HHPFT P ED E L S L + YD+VLNG EIGGGSIRIH+ +QE
Sbjct: 452 LVAIHHPFTSPKDEDIDRLDEALNSPEIALSFKSKAYDMVLNGEEIGGGSIRIHTPYIQE 511
Query: 803 SILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKG 858
+ LNI + +I+A YG PPHGG+A G+DR+++++ G++SIRDVIAFPK
Sbjct: 512 KVFQLLNISEEEAKEKFGFLIEALSYGAPPHGGLAFGLDRILALMTGSESIRDVIAFPKT 571
Query: 859 FGGKDHLSGAPCDIPEAERNYYNLK 883
G L+GAP + E + +K
Sbjct: 572 QKGICPLTGAPDYVSEKQLKEVGIK 596
>sp|C1CV34|SYD_DEIDV Aspartate--tRNA ligase OS=Deinococcus deserti (strain VCD115 / DSM
17065 / LMG 22923) GN=aspS PE=3 SV=1
Length = 577
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 139/212 (65%), Gaps = 10/212 (4%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKF 354
G EVIAS + VLN A PF + ED+RLK+RYLD R PEMQ +L RS+
Sbjct: 86 GAADYEVIASRVKVLNTAKTP-PFELDKGESVAEDIRLKYRYLDLRRPEMQRHLLLRSRA 144
Query: 355 LMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMV 413
+ FL + FV+VETP L K TP GAR+F+VP+ P +FY+L QSPQ KQLLM+
Sbjct: 145 MAAVTAFLDSS-GFVQVETPMLTKSTPEGARDFLVPSRLNPGEFYALPQSPQLFKQLLMI 203
Query: 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LN 467
DRY+Q ARC+RDE R DRQP+FTQLD+E+SF +DDV+ L E L+ + ++
Sbjct: 204 AGYDRYYQFARCFRDEDLRADRQPDFTQLDMEMSFVEQDDVLELQEGLMAHVFKATLDVD 263
Query: 468 IPTRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
+P R F R+SY DA+ YGSDKPDLR++ ++
Sbjct: 264 LP-RPFPRLSYFDAMDRYGSDKPDLRFESALV 294
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 15/252 (5%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690
T K+I E + +AK+ N +D +T ++K + + + + +++G +
Sbjct: 323 TRKQIDELERVAKQ--NGAGGLAWLKRDGDSFTGGISKFVGSV-APQLIKRSGVQDGGTL 379
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFP-LFLPSDSGTL 749
+ + G + ++ LG +R + V++ L P+ F + WV DFP L DSGT
Sbjct: 380 LFAAGDWKKAVTALGAVR-----LAVRDLFDLTSSGPR-FHVSWVTDFPQLEFDEDSGTW 433
Query: 750 ESAHHPFTQPHPEDEHLLSS-NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL 808
HHPFT PHP+D L + E+R YDLVLNG E+GGGS+RIH +Q + +
Sbjct: 434 TYMHHPFTAPHPDDAELFGTLRQGEIRAQAYDLVLNGFEVGGGSVRIHDPAVQTKMFEAI 493
Query: 809 NIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDH 864
+ + + A +YG PPHGGIA G DRL+ ++ G SIR+VIAFPK G D
Sbjct: 494 GFTEAQAREKFGFFMDALEYGTPPHGGIAWGFDRLVMVMSGASSIREVIAFPKNNRGADL 553
Query: 865 LSGAPCDIPEAE 876
++ AP + +A+
Sbjct: 554 MAEAPSLVDDAQ 565
>sp|Q6MTR3|SYD_MYCMS Aspartate--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=aspS PE=3 SV=1
Length = 574
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 138/206 (66%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVI + ++NK+++ PF ++N ED RL +RYLD R P MQ+NL R+K R
Sbjct: 89 EVIVKELFIINKSELT-PFVLENDVNVNEDTRLTYRYLDLRRPVMQNNLIIRAKINHIIR 147
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
FL T +F+EVETP K TP GAR+F+VP+ NKFY+L QSPQ KQLLM+ +DR
Sbjct: 148 NFL-TDSNFLEVETPYFAKSTPEGARDFLVPSRLNKNKFYALPQSPQLFKQLLMISGIDR 206
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFS---- 474
Y+QI RC+RDE R DRQPEFTQLD+E+SF T +DVM++ E L+ L + F
Sbjct: 207 YYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILK-EVKNFEIKEP 265
Query: 475 --RISYNDAISLYGSDKPDLRYDCKI 498
R+SY DAI LYGSDKPDLRYD KI
Sbjct: 266 LLRLSYKDAIDLYGSDKPDLRYDLKI 291
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 132/257 (51%), Gaps = 15/257 (5%)
Query: 633 KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKE-NLEEGDLIV 691
KK E N K F+ ++ +K +++ W+ L L + N +E KE +++ IV
Sbjct: 324 KKQLEDLNQQAKQFHFNSIAFIKFENN-NWSGSLASQLTE-NEKELLIKEFDIKNKATIV 381
Query: 692 VSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLE 750
++ GK E + L+G IR K+ + F + WVVDFPLF
Sbjct: 382 LNIGKYEQISQLMGAIRISLAKM-------FNLETKDDFKLLWVVDFPLFEFSEQENRYV 434
Query: 751 SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNI 810
+AHHPFT P E +N + YDLV+NG EIGGGS RI + E+Q+ + + +
Sbjct: 435 AAHHPFTSPKEECLTDFDTNKKDALTCAYDLVMNGFEIGGGSQRITNPEIQQRMFDAVEL 494
Query: 811 ETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLS 866
T ++ + A+KYG P H GIA G+DR+ I+ + SIRDVIAFPK G D +S
Sbjct: 495 TTQQVETNFGWFMNAYKYGAPYHAGIAWGLDRISMIVTDSNSIRDVIAFPKNSLGIDMMS 554
Query: 867 GAPCDIPEAERNYYNLK 883
AP + E + N+K
Sbjct: 555 NAPDLVSEKQLEELNIK 571
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQR---VDMFALLRDAYGQVQVIVPNHQV 58
R+HTCG L ++++D+ V L GW++ R +F L+D YG Q++V +
Sbjct: 3 RTHTCGELTINNIDQEVILQGWVKKIRKLGAMVFIDLKDRYGITQLVVDQQHI 55
>sp|B8H9C7|SYD_ARTCA Aspartate--tRNA ligase OS=Arthrobacter chlorophenolicus (strain A6
/ ATCC 700700 / DSM 12829 / JCM 12360) GN=aspS PE=3 SV=1
Length = 599
Score = 202 bits (514), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 156/264 (59%), Gaps = 31/264 (11%)
Query: 237 IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGL 296
I++ ++ V G++NEY + + V P+ G +P G
Sbjct: 48 IVVREEEVFHGLRNEYVLQVTGTVSKRPE-----------------GNENPA-----LGT 85
Query: 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
EVIA ++TVLN +D +PF I + + E+ RLKHRYLD R P N+R RS+
Sbjct: 86 GEIEVIAEDVTVLNTSD-PLPFQIDEHVEVGEEARLKHRYLDLRRPGPSRNIRLRSEANR 144
Query: 357 RTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGS 415
R+ L H +VE+ETPTL + TP GAR+F+VP P +Y+L QSPQ KQLL VG
Sbjct: 145 VARDLL-HHEGYVEIETPTLTRSTPEGARDFLVPARLAPGSWYALPQSPQLFKQLLQVGG 203
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPT 470
++Y+QIARCYRDE R DRQPEFTQLDIE SF +DDV+RL E ++ + IPT
Sbjct: 204 FEKYYQIARCYRDEDFRADRQPEFTQLDIEASFVDQDDVIRLGENIVKAVWKLIDVEIPT 263
Query: 471 RTFSRISYNDAISLYGSDKPDLRY 494
RI+Y DA++ YGSDKPDLR+
Sbjct: 264 -PIQRITYADAMARYGSDKPDLRF 286
Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 134/273 (49%), Gaps = 25/273 (9%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + + ++ AK+ ++ V ++ E + K L D +
Sbjct: 313 VVMPGGASQARRALDAWQEWAKQR-GAKGLAYVLYKEDGELAGPVAKNLTDTERAGLADA 371
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSE-SHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
+ GD I + G++ +LLG R E H+ + + P ++ WVVD P+
Sbjct: 372 VGAKPGDCIFFAAGEKTPSRALLGAARVEIGHRTGLID--------PTDWAFCWVVDAPM 423
Query: 741 FLPS-----------DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIG 789
F P+ +G + HH FT P PE +P YD+V NGNEIG
Sbjct: 424 FEPAAAAVASGDVAVGAGQWTAVHHAFTSPKPEFLDTFDKDPESALSYAYDIVCNGNEIG 483
Query: 790 GGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCG 845
GGSIRIH ++QE + + ++ Q +++ FKYG PPHGGIA G DR++S+L G
Sbjct: 484 GGSIRIHQRDVQERVFELMGLDKEDAQTKFGFLLEGFKYGAPPHGGIAFGWDRVVSLLAG 543
Query: 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
+SIRDVIAFPK GG D L+ AP I +R
Sbjct: 544 VESIRDVIAFPKSGGGFDPLTAAPAPITAQQRK 576
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+H G+LR + +TVTL GW+ +R F LRDA G Q++V +V
Sbjct: 3 RTHDLGSLRSEHIGQTVTLAGWVGRRRDHGGVAFVDLRDASGVAQIVVREEEV 55
>sp|Q5KWS9|SYD_GEOKA Aspartate--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426)
GN=aspS PE=3 SV=1
Length = 590
Score = 202 bits (514), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 141/209 (67%), Gaps = 10/209 (4%)
Query: 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
S E+ A I ++N+A PF I + A ED+RLK+RYLD R P M L R K
Sbjct: 93 SIEIQAERIEIINEAKTP-PFSISDDTDAAEDVRLKYRYLDLRRPVMFQTLALRHKITKT 151
Query: 358 TREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSV 416
R+FL + R F+E+ETP L K TP GAR+++VP+ P +FY+L QSPQ KQLLMVG V
Sbjct: 152 VRDFLDSER-FLEIETPMLTKSTPEGARDYLVPSRVHPGEFYALPQSPQIFKQLLMVGGV 210
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPT 470
+RY+QIARC+RDE R DRQPEFTQ+DIE+SF + D+M L E ++ ++IP
Sbjct: 211 ERYYQIARCFRDEDLRADRQPEFTQIDIEMSFIEQKDIMDLTERMMAAVVKAAKGIDIP- 269
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
R F RI+Y++A+S YGSDKPD+R+ +++
Sbjct: 270 RPFPRITYDEAMSRYGSDKPDIRFGLELV 298
Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 661 EWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTL 720
E + K D R +E+GDL++ ++ V + LG +R +K+ L
Sbjct: 363 ELKGPIAKFFTDEEQAALRRALAVEDGDLLLFVADEKAIVAAALGALR-----LKLGKEL 417
Query: 721 PLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHY 779
L D K + WV D+PL + G +AHHPFT P +D LL +NP VR Y
Sbjct: 418 GL-IDEAK-LAFLWVTDWPLLEYDEEEGRYYAAHHPFTMPVRDDIPLLETNPSAVRAQAY 475
Query: 780 DLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALG 835
DLVLNG E+GGGS+RI ++QE + L + +++AF+YG PPHGGIALG
Sbjct: 476 DLVLNGYELGGGSLRIFERDVQEKMFRALGFSEEEARRQFGFLLEAFEYGTPPHGGIALG 535
Query: 836 IDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDI 872
+DRL+ +L G ++RD IAFPK L+ AP +
Sbjct: 536 LDRLVMLLAGRTNLRDTIAFPKTASASCLLTEAPGPV 572
>sp|B8E1C0|SYD_DICTD Aspartate--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=aspS PE=3 SV=1
Length = 592
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 139/206 (67%), Gaps = 8/206 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ I + N A +PF++ + E +RLK+RYLD R +MQ N+ FR F++ R
Sbjct: 95 EIEVEKIKIENTAK-PLPFNLWTNKEIDEIVRLKYRYLDLRRDKMQSNIIFRHNFILSIR 153
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
FLA + F+E+ETP L TP GAR+F++P+ +P KFY+L QSPQ KQ+LMV DR
Sbjct: 154 NFLAKN-GFIEIETPYLIVSTPEGARDFIIPSRLQPGKFYALPQSPQLFKQILMVAGFDR 212
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL----LCYCLNIPTRT-F 473
YFQIARC+RDE R DRQPEFTQLD+E+SF +DV +IEEL L +NI T F
Sbjct: 213 YFQIARCFRDEDLRADRQPEFTQLDMEMSFIEVEDVFTIIEELFKTVLKEVMNIEINTPF 272
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
R+SY DA++ YGSDKPDLRYD KI+
Sbjct: 273 PRLSYEDAMNTYGSDKPDLRYDLKIV 298
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 12/195 (6%)
Query: 683 NLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF- 741
NL+ GD G +DV+ +LG++R E ++ + + W+ DFPLF
Sbjct: 383 NLKSGDSFFCIAGTWKDVVKILGILRLEVAEL-------FNMEKKEGLFFLWITDFPLFE 435
Query: 742 LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQ 801
+ + + HHPFT P ED LL +NPL+V+ YDLVLNG E+G GSIRIH E+Q
Sbjct: 436 YDEEERRIVAEHHPFTSPKDEDIPLLDTNPLKVKAKCYDLVLNGTELGSGSIRIHKKEIQ 495
Query: 802 ESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
E + + L I + +++AF+YG PPHGGIALGIDR+++IL + S+R+VIAFPK
Sbjct: 496 EKVFNILGITPEDAKKKFGFLLEAFEYGAPPHGGIALGIDRIIAILTNSNSLREVIAFPK 555
Query: 858 GFGGKDHLSGAPCDI 872
G L+GAP ++
Sbjct: 556 TQSGTCLLTGAPSEV 570
>sp|A0JXA1|SYD_ARTS2 Aspartate--tRNA ligase OS=Arthrobacter sp. (strain FB24) GN=aspS
PE=3 SV=1
Length = 596
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 137/206 (66%), Gaps = 11/206 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVIA +T+LN +D +PF I + + E+ RLKHRYLD R P N+R RS+ R
Sbjct: 89 EVIAEKVTILNTSD-PLPFQIDEHVEVGEEARLKHRYLDLRRPGPARNMRLRSEANRVAR 147
Query: 360 EFLATHRD-FVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVD 417
E L HRD +VE+ETPTL + TP GAR+FVVP P +Y+L QSPQ KQLL VG +
Sbjct: 148 ELL--HRDGYVEIETPTLTRSTPEGARDFVVPARLAPGSWYALPQSPQLFKQLLQVGGFE 205
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPTRT 472
+Y+QIARCYRDE R DRQPEFTQLDIE SF +DD++ L E ++ + IPT
Sbjct: 206 KYYQIARCYRDEDFRADRQPEFTQLDIEASFVEQDDIISLGESIVKALWQLIDVEIPT-P 264
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
RI+Y DA++ YGSDKPDLR+ ++
Sbjct: 265 IQRITYADAMARYGSDKPDLRFGLEL 290
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 25/273 (9%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + + ++ AK+ ++ V ++ E + K L D +
Sbjct: 313 VVMPGGASQARRALDAWQEWAKQR-GAKGLAYVLFKEDGELAGPVAKNLTDTERAGLADA 371
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSE-SHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
+ GD I + G++ +LLG R E H+ + N P ++ WVVD P+
Sbjct: 372 VGAKPGDCIFFAAGEKTPSRALLGAARVEIGHRTGLIN--------PADWAFCWVVDAPM 423
Query: 741 FLPS-----------DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIG 789
F P+ +G + HH FT P PE +P YD+V NGNEIG
Sbjct: 424 FEPAAAAVASGDVAVGAGQWTAVHHAFTSPKPEFMDSFDKDPESALSYAYDIVCNGNEIG 483
Query: 790 GGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCG 845
GGSIRIH ++QE + + ++ + + +++ FK+G PPHGGIA G DR++++L G
Sbjct: 484 GGSIRIHERDVQERVFELMGLDKADAETKFGFLLEGFKFGAPPHGGIAFGWDRVVALLAG 543
Query: 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
+SIRDVIAFPK GG D L+ AP I +R
Sbjct: 544 VESIRDVIAFPKSGGGYDPLTQAPAPITAQQRK 576
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+H G+LR + +TVTL GW+ +R F LRDA G QV+V +V
Sbjct: 3 RTHDLGSLRSEHIGQTVTLAGWVGRRRDHGGVAFVDLRDASGVSQVVVREEEV 55
>sp|Q1IZB4|SYD_DEIGD Aspartate--tRNA ligase OS=Deinococcus geothermalis (strain DSM
11300) GN=aspS PE=3 SV=1
Length = 577
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 136/210 (64%), Gaps = 14/210 (6%)
Query: 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKF 354
GL EVIA +TVL+ A PF + ED+RLK+RYLD R PEMQ +L RS+
Sbjct: 86 GLADYEVIALRVTVLSAAKTP-PFELDKGESVAEDIRLKYRYLDLRRPEMQRHLMLRSRA 144
Query: 355 LMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMV 413
+ FL FV+VETP L + TP GAR+F+VP+ P +FY+L QSPQ KQLLM+
Sbjct: 145 VAAATAFLDAE-GFVQVETPMLTRSTPEGARDFLVPSRLNPGEFYALPQSPQLFKQLLMI 203
Query: 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC--------YC 465
DRY+Q ARC+RDE R DRQP+FTQLD+E+SF T++DV+ + E LL Y
Sbjct: 204 AGFDRYYQFARCFRDEDLRADRQPDFTQLDMEMSFVTQEDVLDVQERLLAHVFRTVLDYE 263
Query: 466 LNIPTRTFSRISYNDAISLYGSDKPDLRYD 495
L +P F R+SY +A+ YGSDKPDLR+D
Sbjct: 264 LPLP---FPRLSYQEAMDRYGSDKPDLRFD 290
Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 19/282 (6%)
Query: 601 VDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSL 660
D FR + E V ++L P T K++ E + +AK+ N K ++
Sbjct: 297 TDLFRGGEFGAFADAETV-KVLAAPA---LTRKQLDELERVAKQ--NGAKGLAWARREGD 350
Query: 661 EWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTL 720
T +++ L + + +E G ++ S G+ + ++ LG +R + +++
Sbjct: 351 GLTGGISRFLGE-QAAALLERTGVEPGGTLLFSAGEWKKAVTALGAVR-----LALRDLF 404
Query: 721 PLEFDNPKSFSIFWVVDFP-LFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPL-EVRGLH 778
L P+ F + WV+DFP L ++G+ HHPFT P PED L + E+R
Sbjct: 405 DLAAGGPR-FQVAWVLDFPQLEFDEEAGSWTYMHHPFTAPRPEDIPLFGTERQGEIRAQA 463
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIAL 834
YDLVLNG E+GGGSIRIH +Q + + + + + + A YG PPHGGIA
Sbjct: 464 YDLVLNGFEVGGGSIRIHDPAVQTQMFQAIGLSEAEAREKFGFFLDALSYGTPPHGGIAW 523
Query: 835 GIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
G DRL+ ++ G SIR+VIAFPK G D ++GAP + A+
Sbjct: 524 GFDRLVMVMAGASSIREVIAFPKNNRGVDLMAGAPSPVSPAQ 565
>sp|Q6NGZ4|SYD_CORDI Aspartate--tRNA ligase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=aspS PE=3 SV=1
Length = 601
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 140/209 (66%), Gaps = 12/209 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKE---DLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
EV +++ +LN+A +PF I + ++ E + RLK+RYLD R P LR RS+
Sbjct: 94 EVNVTDLEILNEA-APLPFQIDDVSQGGEVGEETRLKYRYLDLRRPNQGAALRLRSQANK 152
Query: 357 RTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGS 415
R L +H DFVE+ETPTL + TP GAR+F+VP +P +Y+L QSPQ KQLLMV
Sbjct: 153 AARNVLDSH-DFVEIETPTLTRSTPEGARDFLVPARLKPGSWYALPQSPQLFKQLLMVAG 211
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLN-----IPT 470
++RY+QIARCYRDE R DRQPEFTQLDIE+SF +DDV+ L EE++ IPT
Sbjct: 212 MERYYQIARCYRDEDFRADRQPEFTQLDIEMSFVDQDDVIALAEEIVSSLWKLIGYEIPT 271
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
R++Y DA+ LYGSDKPDLR+D KI+
Sbjct: 272 -PIPRMTYADAMRLYGSDKPDLRFDIKIV 299
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 122/242 (50%), Gaps = 22/242 (9%)
Query: 651 MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
++ + V ++ E T ++K + D + GD I + G+ + +LLG R+E
Sbjct: 349 LAYILVGENGELTGPVSKNITDEERAGIAAHVGAKPGDCIFFAAGETKSSRALLGAARNE 408
Query: 711 SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLE-----------SAHHPFTQP 759
K L+ ++ WVVD PLF PS T + HH FT P
Sbjct: 409 IAK-------KLDLIKEGDWAFTWVVDAPLFEPSSDATASGDVALGHSKWTAVHHAFTSP 461
Query: 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH-- 817
PE NP E YD+V NGNEIGGGSIRIH ++QE + + I +
Sbjct: 462 KPEWLDSFDENPGEATAYAYDIVCNGNEIGGGSIRIHRRDVQERVFKVMGITEDEAREKF 521
Query: 818 --MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEA 875
++ AF +G PPHGGIA G DR++S+L G SIRDVIAFPK GG D L+ AP IP
Sbjct: 522 GFLLDAFAFGAPPHGGIAFGWDRIVSLLGGFSSIRDVIAFPKSGGGVDPLTDAPAPIPLE 581
Query: 876 ER 877
+R
Sbjct: 582 QR 583
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 5 VYTTRSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
++ R+H G L +TVTL GW+ +R +F LRD+ G VQV+ + V
Sbjct: 1 MHVLRTHLAGDLGKETAGQTVTLTGWVSRRRDHGGVIFIDLRDSSGLVQVVFRENDV 57
>sp|Q48979|SYD_MYCCT Aspartate--tRNA ligase OS=Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC 27343 / NCTC 10154)
GN=aspS PE=3 SV=2
Length = 575
Score = 199 bits (506), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 137/206 (66%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EVI ++ V+NK+++ PF ++N ED RL +RYLD R MQ+NL R+K R
Sbjct: 89 EVIVKDLLVINKSELT-PFVLENDVNVNEDTRLTYRYLDLRRQVMQNNLIIRAKINHIIR 147
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+L T +F+EVETP K TP GAR F+VP+ NKFY+L QSPQ KQLLM+ +DR
Sbjct: 148 NYL-TDLNFLEVETPYFAKSTPEGARHFLVPSRLNKNKFYALPQSPQLFKQLLMISGIDR 206
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFS---- 474
Y+QI RC+RDE R DRQPEFTQLD+E+SF T +DVM++ E L+ L + F
Sbjct: 207 YYQIVRCFRDEDLRIDRQPEFTQLDLEMSFATSEDVMQISESLIKKILK-EVKNFEIKEP 265
Query: 475 --RISYNDAISLYGSDKPDLRYDCKI 498
R+SY DAI LYGSDKPDLRY+ KI
Sbjct: 266 LLRLSYKDAIDLYGSDKPDLRYELKI 291
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 134/256 (52%), Gaps = 13/256 (5%)
Query: 633 KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVV 692
KK E N K F+ ++ +KV+++ W+ L L ++ ++ + N++ I++
Sbjct: 325 KKQLEELNQQAKQFHFNSIAFIKVENN-AWSGSLASQLTEVQKKQLIEEFNIQNKATIIL 383
Query: 693 SWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLES 751
+ GK E++ L+G IR K+ + F + WVVDFPLF +
Sbjct: 384 NIGKYEEISQLMGAIRISLAKM-------FNLETKDDFKLLWVVDFPLFEFSEQENRYVA 436
Query: 752 AHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIE 811
AHHPFT P E +N + YDLV+NG EIGGGS RI +SE+Q+ + + +
Sbjct: 437 AHHPFTSPKEESLADFDTNKKDALACAYDLVMNGFEIGGGSQRITNSEIQQRMFDAVELN 496
Query: 812 TSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSG 867
++ + A+KYG P H GIA G+DR+ IL + SIRDVIAFPK G D +S
Sbjct: 497 QKQVEANFGWFMNAYKYGAPYHAGIAWGLDRISMILTDSNSIRDVIAFPKNSLGIDMMSN 556
Query: 868 APCDIPEAERNYYNLK 883
AP + + + + N+K
Sbjct: 557 APDLVSDKQLDELNIK 572
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQR---VDMFALLRDAYGQVQVIV 53
R+HTCG L L +VD+ V L GW++ R +F L+D YG Q+++
Sbjct: 3 RTHTCGELTLQNVDQKVILQGWVKKIRKLGAMVFIDLKDRYGITQLVI 50
>sp|A5GPL9|SYD_SYNPW Aspartate--tRNA ligase OS=Synechococcus sp. (strain WH7803) GN=aspS
PE=3 SV=1
Length = 611
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 144/208 (69%), Gaps = 11/208 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK--AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
EV+AS ITVLN N+PF + +++ +E+LRL+HRYLD R M NLR R++ +
Sbjct: 94 EVLASGITVLNSVKGNLPFPVSVHDEENTREELRLRHRYLDLRRKRMNDNLRLRAQTIQA 153
Query: 358 TREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSV 416
R FL F+EVETP L + TP GAR++V+P+ ++++L QSPQ KQLLMVG +
Sbjct: 154 ARRFLEDE-GFIEVETPVLTRSTPEGARDYVLPSRVCGGEWFALPQSPQLFKQLLMVGGI 212
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPT 470
+RY+Q+ARC+RDE R DRQPEFTQLDIE+SF ++++++L E L+C +++P
Sbjct: 213 ERYYQVARCFRDEDLRADRQPEFTQLDIEMSFMDQEEILQLNESLICSIWKAVKGIDLP- 271
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKI 498
R F R++++DA+ YG+D+PD RY ++
Sbjct: 272 RPFPRMTWHDAMERYGTDRPDTRYGMEL 299
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 20/240 (8%)
Query: 651 MSTVKVQDS--LEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708
++ ++V+D ++ + L D +E ++ E G L++ G V L +R
Sbjct: 359 LAFIRVRDGGEIDTIGAIKDNLSDEQKQELLSRTGAEPGTLLLFGAGDTATVNKALDRVR 418
Query: 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLL 767
+ K + + DN + ++ WVVDFP+F SD E+ HHPF P+ ED L
Sbjct: 419 Q--YLAKELGMVKADRDNDQ-WNFLWVVDFPMFEFNSDENRYEALHHPFCAPNAED---L 472
Query: 768 SSNPLE-------VRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH--- 817
S+ + R YDLVLNG E+GGGS+RIH S LQ +L + + Q
Sbjct: 473 GSDASQWADTLPGARAQAYDLVLNGLELGGGSLRIHDSALQRQVLQTVGLPLEEAQEQFG 532
Query: 818 -MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
++ A G PPHGG+A G+DR++ +L G +SIRD IAFPK + ++ AP + + +
Sbjct: 533 FLMDALDVGAPPHGGLAFGVDRMVMLLAGEESIRDTIAFPKTQQARCLMTNAPGGVADKQ 592
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
RS+ CG LR +D +V LCGW+ +R +F LRD G VQ+ V
Sbjct: 2 RSNGCGDLRKEHIDNSVQLCGWVDRRRDHGGVIFIDLRDRTGTVQITV 49
>sp|B2S4M2|SYD_TREPS Aspartate--tRNA ligase OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=aspS PE=3 SV=1
Length = 602
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 138/202 (68%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VL++ V +PF + + A ED+RLK+RYLD R MQ + RS+ + R
Sbjct: 111 EVHARTLYVLSENAV-LPFRVDDVVHAHEDIRLKYRYLDLRSQRMQERIALRSRVALAIR 169
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL+ + F+E+ETPT TP GAR+FVVP+ P +FY+L QSPQ KQLLMV DR
Sbjct: 170 QFLSM-KGFIEIETPTFICSTPEGARDFVVPSRVCPGRFYALPQSPQLYKQLLMVAGFDR 228
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPTRT 472
YFQ+ARCYRDE R DRQPEFTQ+D+E+SF +RDDVMR+ E++L Y + +PT
Sbjct: 229 YFQLARCYRDEDARGDRQPEFTQIDLEMSFVSRDDVMRVNEDMLRYVFRTSIGVELPT-F 287
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F R++Y A+ YG+DKPD+R+
Sbjct: 288 FPRLTYAQALDQYGTDKPDMRF 309
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 20/202 (9%)
Query: 677 EFRNKENLEEGDLIV-VSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWV 735
E R + + ++ DL++ V+ + LG +RS + + F + FS W+
Sbjct: 394 EVRRRLSAQDEDLLLFVADCRHRVCCVALGAVRSALIRDE-------SFPEKELFSFVWI 446
Query: 736 VDFPLFL--PSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSI 793
VDFPLF P+++ + AHH F+ P + L +P V+G YDLVLNG E+ GSI
Sbjct: 447 VDFPLFEWNPAEN-KWDPAHHMFSAPQEQYLETLEQDPGSVKGDLYDLVLNGYELASGSI 505
Query: 794 RIHSSELQESILHFLNIE----TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSI 849
RIH ++LQ+ I + ++ + +AFKYG PPHGGIA G+DRL+ ++ G++SI
Sbjct: 506 RIHDTQLQKRIFKIVGLDPEEAGEKFGFLTEAFKYGAPPHGGIAHGLDRLVMLMTGSESI 565
Query: 850 RDVIAFPKGFGGKDHLSGAPCD 871
RDVIAFP K+ L+ +P D
Sbjct: 566 RDVIAFP-----KNTLAASPLD 582
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIY 62
Y R+ CG LR V V L GW+ +R F +RD G VQVIV + +++
Sbjct: 16 YPRRTIACGELRRCHVGTVVVLNGWVHRKRSHGTVSFFNMRDRSGIVQVIVSQEENASLW 75
Query: 63 RT 64
T
Sbjct: 76 ST 77
>sp|O83950|SYD_TREPA Aspartate--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=aspS PE=3 SV=1
Length = 602
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 138/202 (68%), Gaps = 10/202 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A + VL++ V +PF + + A ED+RLK+RYLD R MQ + RS+ + R
Sbjct: 111 EVHARTLYVLSENAV-LPFRVDDVVHAHEDIRLKYRYLDLRSQRMQERIALRSRVALAIR 169
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL+ + F+E+ETPT TP GAR+FVVP+ P +FY+L QSPQ KQLLMV DR
Sbjct: 170 QFLSM-KGFIEIETPTFICSTPEGARDFVVPSRVCPGRFYALPQSPQLYKQLLMVAGFDR 228
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPTRT 472
YFQ+ARCYRDE R DRQPEFTQ+D+E+SF +RDDVMR+ E++L Y + +PT
Sbjct: 229 YFQLARCYRDEDARGDRQPEFTQIDLEMSFVSRDDVMRVNEDMLRYVFRTSIGVELPT-F 287
Query: 473 FSRISYNDAISLYGSDKPDLRY 494
F R++Y A+ YG+DKPD+R+
Sbjct: 288 FPRLTYAQALDQYGTDKPDMRF 309
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 20/202 (9%)
Query: 677 EFRNKENLEEGDLIV-VSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWV 735
E R + + ++ DL++ V+ + LG +RS + + F + FS W+
Sbjct: 394 EVRRRLSAQDEDLLLFVADCRHRVCCVALGAVRSALIRDE-------SFPEKELFSFVWI 446
Query: 736 VDFPLFL--PSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSI 793
VDFPLF P+++ + AHH F+ P + L +P V+G YDLVLNG E+ GSI
Sbjct: 447 VDFPLFEWNPAEN-KWDPAHHMFSAPQEQYLETLEQDPGSVKGDLYDLVLNGYELASGSI 505
Query: 794 RIHSSELQESILHFLNIE----TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSI 849
RIH ++LQ+ I + ++ + +AFKYG PPHGGIA G+DRL+ ++ G++SI
Sbjct: 506 RIHDTQLQKRIFKIVGLDPEEAGEKFGFLTEAFKYGAPPHGGIAHGLDRLVMLMTGSESI 565
Query: 850 RDVIAFPKGFGGKDHLSGAPCD 871
RDVIAFP K+ L+ +P D
Sbjct: 566 RDVIAFP-----KNTLAASPLD 582
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 6 YTTRSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIY 62
Y R+ CG LR V V L GW+ +R F +RD G VQVIV + +++
Sbjct: 16 YPRRTIACGELRRCHVGTVVVLNGWVHRKRSHGTVSFFNMRDRSGIVQVIVSQEENASLW 75
Query: 63 RT 64
T
Sbjct: 76 ST 77
>sp|A0LUJ6|SYD_ACIC1 Aspartate--tRNA ligase OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=aspS PE=3 SV=1
Length = 592
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 179/317 (56%), Gaps = 43/317 (13%)
Query: 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII--IIKDNVASGVKNEY 252
+P D + V+ WV D + FL+L + +GI+ + ++ VA V
Sbjct: 10 LRPADAGSR--VVLAGWVARR-RDLGGVVFLDL----RDASGIVQVVAREGVAGQV---- 58
Query: 253 DDEDSSVVRSLPQFCL-LFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNK 311
+S VR+ +FCL + + L+ +E E D+ EV+A I VL++
Sbjct: 59 ----ASRVRA--EFCLRVAGEVRLRPAGNENPELETGDV---------EVVADEIEVLSE 103
Query: 312 ADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEV 371
A +PF + + E+ RLK+RYLD R P LR RS+ RE +A HR FVEV
Sbjct: 104 A-APLPFPVTGPVEVNEETRLKYRYLDLRRPGPARALRLRSEMNRLAREVMARHR-FVEV 161
Query: 372 ETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDES 430
ETP L + TP GAR+F+VP +P +Y+L QSPQ KQLLMV ++RY+Q+ARC+RDE
Sbjct: 162 ETPYLTRSTPEGARDFLVPARLQPGHWYALPQSPQLFKQLLMVAGLERYYQLARCFRDED 221
Query: 431 TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC--------LNIPTRTFSRISYNDAI 482
R DRQPEFTQLDIE+SF T DDVM L E+++ L +P R++Y +A+
Sbjct: 222 FRADRQPEFTQLDIEMSFVTEDDVMALAEDVIATLWSQLAGVELALP---LPRLTYAEAM 278
Query: 483 SLYGSDKPDLRYDCKIM 499
+GSDKPDLR+ +I+
Sbjct: 279 RRFGSDKPDLRFGQEIV 295
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 134/265 (50%), Gaps = 10/265 (3%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + ++ E+ A+ + V E T + K L D
Sbjct: 317 VVMPGGAGQSRSELDEWTTFAR---SRGAKGLAYVLVGAELTGPIAKNLSDAERAGLPAA 373
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741
GD I + G+Q LLG +R E + + + T P ++S+ W+VD PLF
Sbjct: 374 TGARPGDAIFFAAGEQRASQELLGAVRLEIAR-RCRLTDPA--SGAPAWSLCWIVDPPLF 430
Query: 742 LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQ 801
P +G S HHPFT P PE + P E YD+V NGNEIGGGSIRIH +++Q
Sbjct: 431 EPDGAGGWTSVHHPFTAPKPEWMDRFADKPGEALAAAYDIVANGNEIGGGSIRIHRADVQ 490
Query: 802 ESILHFLNIE----TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
+ + L I + +++AF+YG PPHGGIA G DR+ ++L G +SIRDVIAFPK
Sbjct: 491 QRVFEVLGISEAEANAKFGFLLEAFRYGPPPHGGIAFGWDRIAALLAGVESIRDVIAFPK 550
Query: 858 GFGGKDHLSGAPCDIPEAERNYYNL 882
G D L+GAP I +R +
Sbjct: 551 TASGTDPLTGAPTPITPEQRKEAGI 575
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQR---VDMFALLRDAYGQVQVIV 53
R+H G LR +D V L GW+ +R +F LRDA G VQV+
Sbjct: 3 RTHEAGTLRPADAGSRVVLAGWVARRRDLGGVVFLDLRDASGIVQVVA 50
>sp|Q0S0P3|SYD_RHOSR Aspartate--tRNA ligase OS=Rhodococcus sp. (strain RHA1) GN=aspS
PE=3 SV=1
Length = 602
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 138/205 (67%), Gaps = 9/205 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV +++ VLN++ +PF + + +A E+ RLK+RYLD R H +R RSK R
Sbjct: 92 EVNVTDLEVLNES-APLPFQLDD--QAGEEARLKYRYLDLRREGPGHAIRLRSKVNAAAR 148
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
LA H +FVEVETPTL + TP GAR+F+VP +P FY+L QSPQ KQLLMVG ++R
Sbjct: 149 AVLA-HHEFVEVETPTLTRSTPEGARDFLVPARLQPGSFYALPQSPQLFKQLLMVGGIER 207
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRT----FS 474
Y+QIARCYRDE R DRQPEFTQLDIE+SF +DDV+ L EE+L + +
Sbjct: 208 YYQIARCYRDEDFRADRQPEFTQLDIEMSFVNQDDVILLAEEVLSSLWKLVGHEIKTPIA 267
Query: 475 RISYNDAISLYGSDKPDLRYDCKIM 499
R++Y +A+ YGSDKPDLR+ +++
Sbjct: 268 RMTYAEAMRRYGSDKPDLRFGVELV 292
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 130/272 (47%), Gaps = 23/272 (8%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P K++ ++ AK+ ++ V V + + K L D E
Sbjct: 314 VVMPGGASQPRKQLDAWQEWAKQR-GAKGLAYVLVGEDGTLGGPVAKNLTDTEREGLAAH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741
+ GD I + G + +LLG R E I K L +P +++ WVVD PLF
Sbjct: 373 VGAKPGDCIFFAAGTTKSSRALLGAARGE---IARKQNL----IDPDAWAFVWVVDAPLF 425
Query: 742 LPSDSGTLE-----------SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790
P+ T + HH FT P PE ++P YD+V NGNEIGG
Sbjct: 426 EPTADATASGDVALGYSAWTAVHHAFTSPKPESIDTFDTDPGSALAYAYDIVCNGNEIGG 485
Query: 791 GSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGT 846
GSIRIH ++QE + + I + ++ AF +G PPHGGIA G DR+ ++L G
Sbjct: 486 GSIRIHRKDIQERVFKVMGISHEEAEEKFGFLLDAFAFGAPPHGGIAFGWDRITALLAGV 545
Query: 847 QSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
SIR+VIAFPK GG D L+ AP I +R
Sbjct: 546 DSIREVIAFPKSGGGVDPLTNAPAPITAQQRK 577
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
R+H G+LR +TVTL GW+ +R +F LRDA G QV+
Sbjct: 3 RTHLAGSLRAEQAQQTVTLTGWVARRRDHGGVIFIDLRDASGVSQVV 49
>sp|Q8FT19|SYD_COREF Aspartate--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=aspS PE=3 SV=2
Length = 600
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 139/210 (66%), Gaps = 16/210 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKE---DLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
EV ++ TVLN++ +PF I++ + A E + RLK+RYLD R P + LR RS
Sbjct: 92 EVSVTDFTVLNES-APLPFQIEDASSAGEVGEETRLKYRYLDLRRPVQANALRLRSAANK 150
Query: 357 RTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGS 415
R L +H DF E+ETPTL + TP GAR+F+VP +P FY+L QSPQ KQLL V
Sbjct: 151 AARTVLDSH-DFTEIETPTLTRSTPEGARDFLVPARLKPGTFYALPQSPQLFKQLLQVAG 209
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-------YCLNI 468
++RY+QIARCYRDE R DRQPEFTQLD+E+SF ++DV+ L EE+L Y ++
Sbjct: 210 MERYYQIARCYRDEDFRADRQPEFTQLDVEMSFVDQEDVIALAEEILTEVWKLIGYEIST 269
Query: 469 PTRTFSRISYNDAISLYGSDKPDLRYDCKI 498
P RI+Y DA+ LYGSDKPDLR+D +I
Sbjct: 270 P---IPRITYADAMRLYGSDKPDLRFDIQI 296
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 651 MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
++ + V + E + K + D E E GD I + G +LLG R E
Sbjct: 347 LAYILVGEDGELGGPVAKNITDAEREGIAAHVGAEPGDCIFFAAGDTRSSRALLGAARDE 406
Query: 711 SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLE-----------SAHHPFTQP 759
+ L L D SF WVVD P+F + T + HH FT P
Sbjct: 407 -----IARKLDLIRDGEWSF--VWVVDAPMFESAADATASGDVALGNSKWTAVHHAFTSP 459
Query: 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH-- 817
PE NP E YD+V NGNEIGGGSIRIH ++QE + + I +
Sbjct: 460 KPEFLDTFDENPGEALAYAYDIVCNGNEIGGGSIRIHQRDVQERVFKVMGISEEEARDKF 519
Query: 818 --MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEA 875
++ AF +G PPHGGIA G DR++S+L G SIRDVIAFPK GG D L+ AP I
Sbjct: 520 GFLLDAFAFGAPPHGGIAFGWDRIVSLLGGFDSIRDVIAFPKSGGGVDPLTDAPAPITPL 579
Query: 876 ERN 878
+R
Sbjct: 580 QRK 582
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+H G LR + ++VTL GW+ +R +F LRD G QV+ N V
Sbjct: 3 RTHLSGELRKENAGQSVTLTGWVARRRDHGGVIFIDLRDRSGIAQVVFRNEDV 55
>sp|C3PGN5|SYD_CORA7 Aspartate--tRNA ligase OS=Corynebacterium aurimucosum (strain ATCC
700975 / DSM 44827 / CN-1) GN=aspS PE=3 SV=1
Length = 606
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 136/211 (64%), Gaps = 16/211 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKN---YNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
EV S++ VLNK+ +PF I + + E+ RLK+RYLD R LR RS
Sbjct: 92 EVNVSDLEVLNKS-AALPFQIDDPSSSGEVGEETRLKYRYLDLRRERQHEALRLRSAANR 150
Query: 357 RTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGS 415
RE L +H DF E+ETPTL + TP GAR+F+VP +P +Y+L QSPQ KQLLMV
Sbjct: 151 AAREVLDSH-DFTEIETPTLTRSTPEGARDFLVPARLKPGSWYALPQSPQLFKQLLMVAG 209
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEE-------LLCYCLNI 468
++RY+QIARCYRDE R DRQPEFTQLD+E+SF +DDV+ L EE L+ Y +
Sbjct: 210 MERYYQIARCYRDEDFRADRQPEFTQLDVEMSFVDQDDVIALAEEIVSALWKLIGYEIKT 269
Query: 469 PTRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
P R++Y DA+ YGSDKPDLR+D KI+
Sbjct: 270 P---IPRMTYADAMKYYGSDKPDLRFDIKIV 297
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 115/228 (50%), Gaps = 22/228 (9%)
Query: 666 LTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFD 725
+ K + D E + GD I + G + +LLG R E + L L D
Sbjct: 362 VAKNITDAEREGIAEHVGAKPGDAIFFAAGDVKSSRALLGAARGE-----IAKKLDLIKD 416
Query: 726 NPKSFSIFWVVDFPLFLPSDSGTLE-----------SAHHPFTQPHPEDEHLLSSNPLEV 774
+F+ WVVD PLF P+ T + HH FT P PE NP E
Sbjct: 417 GDWAFT--WVVDAPLFEPAADATASGDVALGHSKWTAVHHAFTSPKPEYLDSFDENPGEA 474
Query: 775 RGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHG 830
YD+V NGNEIGGGSIRIH ++Q+ + + I Q ++ AF++G PPHG
Sbjct: 475 LAYAYDIVCNGNEIGGGSIRIHDQDVQKRVFDVMGIGEEEAQEKFGFLLDAFQFGAPPHG 534
Query: 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
GIA G DR++S+L G SIRDVIAFPK GG D L+ AP IP +R
Sbjct: 535 GIAFGWDRIVSLLGGFDSIRDVIAFPKSGGGVDPLTDAPGTIPAEQRK 582
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+H G LR +TVTL GW+ +R +F LRD G QV+ +V
Sbjct: 3 RTHLAGELRKEMAGETVTLTGWVARRRDHGGVIFIDLRDRSGVAQVVFRESEV 55
>sp|A5D3E3|SYD_PELTS Aspartate--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=aspS PE=3 SV=1
Length = 603
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+ + +LN+A PF+I++ E+LRL++RYLD R PEMQ L FR + R
Sbjct: 102 EVLGCELRILNRAKTP-PFYIEDGVDVDENLRLRYRYLDLRRPEMQEALIFRHRAAKSVR 160
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL H F+E+ETP L + TP GAR+++VP+ P +FY+L QSPQ KQ+LMV +DR
Sbjct: 161 DFLDEH-GFLEIETPMLTRSTPEGARDYLVPSRVNPGRFYALPQSPQLFKQILMVAGMDR 219
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LC---YCLNIPTRT 472
YFQIARC+RDE R DRQPEFTQ+DIE+SF DDV+ L E + LC L+IP R
Sbjct: 220 YFQIARCFRDEDLRADRQPEFTQIDIEMSFVDVDDVLELTEGMVARLCREVAGLDIP-RP 278
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
F R+SY +A+ +GSDKPD R+ ++
Sbjct: 279 FPRLSYREAMDRFGSDKPDTRFGMEL 304
Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 121/218 (55%), Gaps = 12/218 (5%)
Query: 664 NKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE 723
+ ++K + + + + + GDL++ K E V + LG +R H + +P
Sbjct: 372 SAISKFFTEAELSAILERMDAKPGDLLLFVADKPEVVAASLGALRL--HLGERLGLIP-- 427
Query: 724 FDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLV 782
++ WVVDFPL + G E+ HHPFT P D LL S+P VR YDLV
Sbjct: 428 ---EGTYHFLWVVDFPLLEYNQEEGRYEAMHHPFTSPRETDIPLLESDPGRVRAKAYDLV 484
Query: 783 LNGNEIGGGSIRIHSSELQESILHFLNIE----TSSLQHMIQAFKYGCPPHGGIALGIDR 838
LNG E+GGGSIRIH ++QE + + I+ + +++AF+YG PPHGGIALG DR
Sbjct: 485 LNGTEVGGGSIRIHRRDVQEKVFTAIGIDREEASEKFGFLLEAFEYGTPPHGGIALGFDR 544
Query: 839 LMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
L+ +L G +IRDVIAFPK D ++ AP + E +
Sbjct: 545 LVMLLAGKNTIRDVIAFPKTQSATDLMTMAPGPVAEEQ 582
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSH CG LR+ V L GW+Q +R +F LRD G VQV+
Sbjct: 10 RSHYCGELRVEHAGLEVVLTGWVQRRRDHGGLIFIDLRDRTGIVQVV 56
>sp|B1VDL1|SYD_CORU7 Aspartate--tRNA ligase OS=Corynebacterium urealyticum (strain ATCC
43042 / DSM 7109) GN=aspS PE=3 SV=1
Length = 606
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 137/210 (65%), Gaps = 16/210 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKE---DLRLKHRYLDFRFPEMQHNLRFRSKFLM 356
EV S + VLN++ +PF I + + A E + RLK+RYLD R LR RSK
Sbjct: 92 EVNVSELEVLNES-AALPFQIDDPSSAGEVGEETRLKYRYLDLRRASQGDALRLRSKANA 150
Query: 357 RTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGS 415
R+ L H DF E+ETPTL + TP GAR+F+VP +P FY+L QSPQ KQLLMV
Sbjct: 151 AARKVLERH-DFTEIETPTLTRSTPEGARDFLVPARLKPGTFYALPQSPQLFKQLLMVAG 209
Query: 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-------YCLNI 468
++RY+QIARCYRDE R DRQPEFTQLD+E+SF ++DV+ L EE+L Y +
Sbjct: 210 MERYYQIARCYRDEDFRADRQPEFTQLDVEMSFVDQEDVIALAEEILTEVWSTAGYEVQT 269
Query: 469 PTRTFSRISYNDAISLYGSDKPDLRYDCKI 498
P F R++Y DA+ LYGSDKPDLR+D +I
Sbjct: 270 P---FPRMTYADAMRLYGSDKPDLRFDIQI 296
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 651 MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
++ + V + E + + K + D + + GD I + G + +LLG R E
Sbjct: 347 LAYILVGEDGELSGPVAKNITDDERAGIADHVGAKPGDCIFFAAGDTKSSRALLGAARGE 406
Query: 711 SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLE-----------SAHHPFTQP 759
+ L L D+ +F+ WVVD P+F P+ E + HH FT P
Sbjct: 407 -----IAQKLGLIDDSKWAFT--WVVDAPMFEPAADARAEGDVALGNSAWTAVHHAFTSP 459
Query: 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH-- 817
PE +P YD+V NGNEIGGGSIRIH ++QE + + I +
Sbjct: 460 KPEFLDSFDQDPGSALAYAYDIVCNGNEIGGGSIRIHQRDVQERVFQVMGISQEEAREKF 519
Query: 818 --MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEA 875
++ AF +G PPHGGIA G DR++S+L G SIRDVIAFPK GG D L+ AP +I
Sbjct: 520 GFLLDAFAFGAPPHGGIAFGWDRIVSLLGGFDSIRDVIAFPKSGGGVDPLTDAPSEITPE 579
Query: 876 ERN 878
+R
Sbjct: 580 QRK 582
Score = 40.0 bits (92), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+H G LR D+D VTL GW+ +R +F LRD G QV+ +V
Sbjct: 3 RTHLAGELRPGDIDSEVTLTGWVGRRRDHGGVIFIDLRDRSGVAQVVFRESEV 55
>sp|C1B4G8|SYD_RHOOB Aspartate--tRNA ligase OS=Rhodococcus opacus (strain B4) GN=aspS
PE=3 SV=1
Length = 602
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 137/205 (66%), Gaps = 9/205 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + + VLN++ +PF + + +A E+ RLK+RYLD R H +R RSK R
Sbjct: 92 EVNVTELEVLNES-APLPFQLDD--QAGEEARLKYRYLDLRREGPGHAIRLRSKVNAAAR 148
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
LA H +FVEVETPTL + TP GAR+F+VP +P FY+L QSPQ KQLLMVG ++R
Sbjct: 149 AVLA-HHEFVEVETPTLTRSTPEGARDFLVPARLQPGSFYALPQSPQLFKQLLMVGGIER 207
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRT----FS 474
Y+QIARCYRDE R DRQPEFTQLDIE+SF +DDV+ L EE+L + +
Sbjct: 208 YYQIARCYRDEDFRADRQPEFTQLDIEMSFVNQDDVILLAEEVLTSLWKLVGHEIKTPIA 267
Query: 475 RISYNDAISLYGSDKPDLRYDCKIM 499
R++Y +A+ YGSDKPDLR+ +++
Sbjct: 268 RMTYAEAMRRYGSDKPDLRFGVELV 292
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 130/272 (47%), Gaps = 23/272 (8%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P K++ ++ AK+ ++ V V + + K L D +
Sbjct: 314 VVMPGGASQPRKQLDAWQEWAKQR-GAKGLAYVLVGEDGTLGGPVAKNLTDAERDGLAAH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741
+ GD I + G + +LLG R E I K L +P +++ W+VD PLF
Sbjct: 373 VGAKPGDCIFFAAGATKSSRALLGAARGE---IARKQNL----IDPDAWAFVWIVDAPLF 425
Query: 742 LPSDSGTLE-----------SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790
P+ T + HH FT P PE ++P YD+V NGNEIGG
Sbjct: 426 EPTADATASGDVALGYSAWTAVHHAFTSPKPESIDTFDTDPGSALAYAYDIVCNGNEIGG 485
Query: 791 GSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGT 846
GSIRIH ++QE + + I + ++ AF +G PPHGGIA G DR+ ++L G
Sbjct: 486 GSIRIHRKDIQERVFKVMGISHEEAEEKFGFLLDAFAFGAPPHGGIAFGWDRITALLAGV 545
Query: 847 QSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
SIR+VIAFPK GG D L+ AP I +R
Sbjct: 546 DSIREVIAFPKSGGGVDPLTSAPAPITAQQRK 577
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
R+H G+LR +TVTL GW+ +R +F LRDA G QV+
Sbjct: 3 RTHLAGSLRAEQAQQTVTLTGWVARRRDHGGVIFIDLRDASGVSQVV 49
>sp|Q3AVS9|SYD_SYNS9 Aspartate--tRNA ligase OS=Synechococcus sp. (strain CC9902) GN=aspS
PE=3 SV=1
Length = 610
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 142/209 (67%), Gaps = 11/209 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK--AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
EV+AS I VLNK N+PF + +++ +E+LRL+HRYLD R M NLR R++ +
Sbjct: 94 EVLASEIVVLNKVTGNLPFPVSVHDEENTREELRLRHRYLDLRRKRMNDNLRLRARTIQA 153
Query: 358 TREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSV 416
R FL F+EVETP L + TP GAR++V+P+ +++L QSPQ KQLLMVG +
Sbjct: 154 ARRFLEDE-GFIEVETPVLTRSTPEGARDYVLPSRVCGGDWFALPQSPQLFKQLLMVGGI 212
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPT 470
+RY+Q+ARC+RDE R DRQPEFTQLDIE+SF + +++L E+L+C + +P
Sbjct: 213 ERYYQVARCFRDEDLRADRQPEFTQLDIEMSFMGEEQILQLNEDLICAIWKSVKGIELP- 271
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKIM 499
R F R++++DA+ YG+D+PD RY +++
Sbjct: 272 RPFPRMTWHDAMERYGTDRPDTRYGMELV 300
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 729 SFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLE-------VRGLHYD 780
+++ WVVDFP+F SD E+ HHPF P+ +D L S+P + R YD
Sbjct: 436 AWNFLWVVDFPMFEFNSDENRYEALHHPFCAPNTDD---LGSDPAQWATTLPKARAQAYD 492
Query: 781 LVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGI 836
LVLNG E+GGGS+RIH S LQ +L + + Q +I A G PPHGG+A G+
Sbjct: 493 LVLNGLELGGGSLRIHDSALQRQVLQTVGLPLEEAQAQFGFLINALDMGAPPHGGLAFGV 552
Query: 837 DRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
DR++ +L G SIRD IAFPK + ++ AP + E +
Sbjct: 553 DRMVMLLAGEDSIRDTIAFPKTQQARCLMTDAPSSVAEKQ 592
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
RS+ CG LR +D V LCGW+ +R +F LRD G VQ+ V
Sbjct: 2 RSNGCGDLRKDSIDAVVQLCGWVDRRRDHGGVIFIDLRDRSGTVQITV 49
>sp|B7GPT0|SYD_BIFLS Aspartate--tRNA ligase OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=aspS PE=3 SV=1
Length = 599
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 138/210 (65%), Gaps = 20/210 (9%)
Query: 300 EVIASNITVLNKADVNIPFHI----KNYNKAK---EDLRLKHRYLDFRFPEMQHNLRFRS 352
EV+A I +L K+D +PF + +N ++ K ED+RLK+RYLD R P MQHNL+ RS
Sbjct: 93 EVVAETIEILAKSDA-LPFQVSTALENESENKLPGEDVRLKYRYLDLRRPSMQHNLKLRS 151
Query: 353 KFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLL 411
R L DF EVETPT K TP GAR+FVVP P +Y+L QSPQ LKQLL
Sbjct: 152 DMAKAARHAL-EDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLL 210
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-------Y 464
MV V+RY+Q+ARCYRDE R DRQPEFTQLD+E+++ ++DVM + E+++ Y
Sbjct: 211 MVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMAYVDQEDVMAMTEKVIAAIWKSAGY 270
Query: 465 CLNIPTRTFSRISYNDAISLYGSDKPDLRY 494
+ +P RI++ DA+ YGSDKPDLR+
Sbjct: 271 EVQLP---LPRITWKDAMDKYGSDKPDLRF 297
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 661 EWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTL 720
E + K L D R EEGD + + G +E LLG +R E + + L
Sbjct: 362 ELKGPVAKNLSDEERNGLREAVGAEEGDAVFFAAGSRESAQLLLGAVRVE---LASREGL 418
Query: 721 PLEFDNPKSFSIFWVVDFPLFLPSDS----------GTLESAHHPFTQPHPEDEHLLSSN 770
+PK F+ WVVDFPLF P+D S HHPFT P + +
Sbjct: 419 L----DPKKFAFTWVVDFPLFKPTDDPDDDDVAVGHSKWTSMHHPFTMPSKDWIDKFDKD 474
Query: 771 PLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGC 826
P YD+V NG E+GGGS+RIH ++Q +L L I +++AFKYG
Sbjct: 475 PEHAMSDSYDIVCNGEEMGGGSVRIHRDDIQARVLDVLGITKEEADEKFGFLLEAFKYGA 534
Query: 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAER 877
PPH G+ALG DR +SIL G SIRDVIAFPK GG+D L+GAP I + +R
Sbjct: 535 PPHAGLALGWDRTVSILAGADSIRDVIAFPKAGGGRDPLTGAPAPISDEQR 585
>sp|B3DPM0|SYD_BIFLD Aspartate--tRNA ligase OS=Bifidobacterium longum (strain DJO10A)
GN=aspS PE=3 SV=1
Length = 599
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 138/210 (65%), Gaps = 20/210 (9%)
Query: 300 EVIASNITVLNKADVNIPFHI----KNYNKAK---EDLRLKHRYLDFRFPEMQHNLRFRS 352
EV+A I +L K+D +PF + +N ++ K ED+RLK+RYLD R P MQHNL+ RS
Sbjct: 93 EVVAETIEILAKSDA-LPFQVSTALENESENKLPGEDVRLKYRYLDLRRPSMQHNLKLRS 151
Query: 353 KFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLL 411
R L DF EVETPT K TP GAR+FVVP P +Y+L QSPQ LKQLL
Sbjct: 152 DMAKAARHAL-EDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLL 210
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-------Y 464
MV V+RY+Q+ARCYRDE R DRQPEFTQLD+E+++ ++DVM + E+++ Y
Sbjct: 211 MVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMAYVDQEDVMAMTEKVIAAIWKSAGY 270
Query: 465 CLNIPTRTFSRISYNDAISLYGSDKPDLRY 494
+ +P RI++ DA+ YGSDKPDLR+
Sbjct: 271 EVQLP---LPRITWKDAMDKYGSDKPDLRF 297
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 119/231 (51%), Gaps = 21/231 (9%)
Query: 661 EWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTL 720
E + K L D R EEGD + + G +E LLG +R E + + L
Sbjct: 362 ELKGPVAKNLSDEERNGLREAVGAEEGDAVFFAAGSRESAQLLLGAVRVE---LASREGL 418
Query: 721 PLEFDNPKSFSIFWVVDFPLFLPSDS----------GTLESAHHPFTQPHPEDEHLLSSN 770
+PK F+ WVVDFPLF P+D S HHPFT P + +
Sbjct: 419 L----DPKKFAFTWVVDFPLFKPTDDPDDDDVAVGHSKWTSMHHPFTMPSKDWIDKFDKD 474
Query: 771 PLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGC 826
P YD+V NG E+GGGS+RIH ++Q +L L I +++AFKYG
Sbjct: 475 PEHAMSDSYDIVCNGEEMGGGSVRIHRDDIQARVLDVLGITKEEADEKFGFLLEAFKYGA 534
Query: 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAER 877
PPH G+ALG DR +SIL G SIRDVIAFPK GG+D L+GAP I + +R
Sbjct: 535 PPHAGLALGWDRTVSILAGADSIRDVIAFPKAGGGRDPLTGAPAPISDEQR 585
>sp|Q7U3K6|SYD_SYNPX Aspartate--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=aspS
PE=3 SV=1
Length = 610
Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 143/208 (68%), Gaps = 11/208 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK--AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
EV+AS I VLN N+PF + +++ +E+LRL+HRYLD R M NLR R++ +
Sbjct: 94 EVLASGIIVLNNVKGNLPFPVSVHDEENTREELRLRHRYLDLRRKRMNDNLRLRAQTIQA 153
Query: 358 TREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSV 416
R FL F+EVETP L + TP GAR++V+P+ ++++L QSPQ KQLLMVG +
Sbjct: 154 ARRFLEDE-GFIEVETPVLTRSTPEGARDYVLPSRVCGGEWFALPQSPQLFKQLLMVGGI 212
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPT 470
+RY+Q+ARC+RDE R DRQPEFTQLDIE+SF ++++++L E L+C +++P
Sbjct: 213 ERYYQVARCFRDEDLRADRQPEFTQLDIEMSFMDQEEILQLNESLICSIWKAVKGIDLP- 271
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKI 498
R F R++++DA+ YG+D+PD RY ++
Sbjct: 272 RPFPRMTWHDAMERYGTDRPDTRYGMEL 299
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 670 LPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKS 729
L D +E ++ E G L++ G V L +R + K + + DN +
Sbjct: 380 LSDEQKQELLSRTGAEPGTLLLFGAGDTATVNKALDRVRQ--YLAKELGMVKADQDNDQ- 436
Query: 730 FSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLE-------VRGLHYDL 781
++ WVVDFP+F S+ E+ HHPF P+ ED LSS+ + R YDL
Sbjct: 437 WNFLWVVDFPMFEFNSEENRYEALHHPFCAPNAED---LSSDASQWADTLPGARAQAYDL 493
Query: 782 VLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGID 837
VLNG E+GGGS+RIH S LQ +L + + Q ++ A G PPHGG+A G+D
Sbjct: 494 VLNGLELGGGSLRIHDSALQRQVLQTVGLPLEEAQEQFGFLMDALDVGAPPHGGLAFGVD 553
Query: 838 RLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
R++ +L G +SIRD IAFPK + ++ AP + + +
Sbjct: 554 RMVMLLAGEESIRDTIAFPKTQQARCLMTNAPGGVADKQ 592
Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
RS+ CG LR ++D+ V LCGW+ +R +F LRD G VQ+ V
Sbjct: 2 RSNGCGDLREQNIDQQVQLCGWVDRRRDHGGVIFIDLRDRSGTVQIKV 49
>sp|C5BPP4|SYD_TERTT Aspartate--tRNA ligase OS=Teredinibacter turnerae (strain ATCC
39867 / T7901) GN=aspS PE=3 SV=1
Length = 600
Score = 196 bits (498), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 141/211 (66%), Gaps = 10/211 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ + +T+LN AD PF + ++ ED+RL++RYLD R EMQHNLRFRSK R
Sbjct: 93 EIYGTGLTILNTADTP-PFQLDSFTSVGEDVRLRYRYLDLRRKEMQHNLRFRSKVTNAIR 151
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLLMVGSVD 417
+L H F+++ETP L + TP GAR+++VP THE +KF++L QSPQ KQLLMV D
Sbjct: 152 NYLDEH-GFLDIETPILTRATPEGARDYLVPSRTHE-SKFFALPQSPQLFKQLLMVSGFD 209
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMR----LIEELLCYCLNIPTRTF 473
RY+QIA+C+RDE R DRQPEFTQ+DIE SF + +M +I +L L+I F
Sbjct: 210 RYYQIAKCFRDEDLRADRQPEFTQIDIETSFMDEEQIMSVTEGMIRKLFNDVLSIDLGDF 269
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIMIAIKE 504
R+ Y++A+ YGSDKPD+R + M+ IK+
Sbjct: 270 PRMPYSEAMEKYGSDKPDMRIPLE-MVEIKD 299
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 129/256 (50%), Gaps = 22/256 (8%)
Query: 624 LPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL----TKILPDLNVEEFR 679
+P+ + KKI Y + ++ +KV D + N L K LP +
Sbjct: 325 VPQGGEIPRKKIDAYTKFVS-IYGAKGLAYIKVNDKDDLENGLQSPIVKFLPAEVCKAIL 383
Query: 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFP 739
+ E GDLI + V LG +R K+ L L ++ WVVDFP
Sbjct: 384 ERVGAENGDLIFFGADTTKVVTEALGALRC-----KLGEDLDL---YTCEWAPLWVVDFP 435
Query: 740 LFLPSDSGTLESAHHPFTQPH--PEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS 797
+F +D G L + HHPFT P PED L +NP YD+VLNG E+GGGS+RIH+
Sbjct: 436 MFEETDEGGLTALHHPFTAPSCSPED---LQANPATALSRAYDMVLNGTELGGGSVRIHN 492
Query: 798 SELQESILHFLNI----ETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853
++Q+++ L I + ++ A K+G PPHGG+A G+DRL+ ++ G SIRDVI
Sbjct: 493 QDMQQAVFKILGISPEEQREKFGFLLDALKFGAPPHGGLAFGLDRLIMLMTGADSIRDVI 552
Query: 854 AFPKGFGGKDHLSGAP 869
AFPK ++ AP
Sbjct: 553 AFPKTQSAACLMTDAP 568
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RS CG L +++ + VTLCGW+ +R +F LRD G VQV+
Sbjct: 2 RSVYCGVLTAANIGEEVTLCGWVDRRRDHGGVIFVDLRDRDGIVQVV 48
>sp|B5RM04|SYD_BORDL Aspartate--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=aspS
PE=3 SV=1
Length = 585
Score = 196 bits (498), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 146/216 (67%), Gaps = 11/216 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+IA NI +++K + +PF I+N N A ++ +L++RYLD R E + + RSK + R
Sbjct: 92 EIIAENIDIISKCN-ELPFMIENNNNASDNSKLEYRYLDLRREEQKQKIILRSKVIHIIR 150
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
L T +DF+E+ETPT K TP GAR+F+VP+ FY+L QSPQ KQL M+ +D+
Sbjct: 151 NHL-TKQDFLELETPTFVKSTPEGARDFLVPSRIHKGHFYALPQSPQIYKQLAMIAGLDK 209
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPT-RTF 473
YFQIARCYRDE +R DRQPEFTQLD+E+SF ++++ +LIE L+ LNI + F
Sbjct: 210 YFQIARCYRDEDSRGDRQPEFTQLDLEMSFIKKENIFKLIENLIFTIFKNSLNITLPKKF 269
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM---IAIKEQP 506
+I+Y DA+++YGSDKPD RY+ I A+K+ P
Sbjct: 270 KKITYKDAMNIYGSDKPDTRYELLIQDMSKALKQSP 305
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 105/204 (51%), Gaps = 12/204 (5%)
Query: 684 LEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-L 742
L+ DLI E +G IR +K L N F W+ DFPLF
Sbjct: 382 LKNNDLIFFIADLWETACKAIGQIR-------IKIATELNLINKNIFEFLWIYDFPLFEY 434
Query: 743 PSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQE 802
D+ + ++AHH F+ P + + L SNP EV G YDLVLNG E+G GSIR+H+ ELQ+
Sbjct: 435 DEDTQSYKAAHHMFSMPQAKYINTLESNPSEVLGEVYDLVLNGTELGSGSIRVHTKELQQ 494
Query: 803 SILHFL----NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKG 858
I + + I ++A +YG P HGGIA+GIDRL+ ++ + SI+DVI FPK
Sbjct: 495 RIFNIVGFNDKIAEERFGFFLKALEYGAPIHGGIAIGIDRLLMLMTNSNSIKDVILFPKN 554
Query: 859 FGGKDHLSGAPCDIPEAERNYYNL 882
L +P I + NL
Sbjct: 555 SFAASPLDKSPSKISNEQLKELNL 578
>sp|Q55C99|SYDM_DICDI Aspartate--tRNA ligase, mitochondrial OS=Dictyostelium discoideum
GN=maspS PE=3 SV=1
Length = 692
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKA-KEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT 358
E+ + +LN V++PF +++ + A E+LRLK+RY+D R ++Q N+R RSK M
Sbjct: 183 EISVDQLQLLNNC-VDLPFTVEHDSTAVSEELRLKYRYVDLRRDKVQSNIRLRSKVAMAA 241
Query: 359 REFLATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
R +L + F+EVETPTLF+ TP GARE++VPT +FYSL QSPQQ KQLLMVG +DR
Sbjct: 242 RNYLINQQ-FIEVETPTLFRPTPEGAREYLVPTRHQGQFYSLPQSPQQYKQLLMVGGIDR 300
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPTRTF 473
YFQ+ARCYRDE R DRQPEFTQ+D+ELSF + R+IE L+ NI F
Sbjct: 301 YFQLARCYRDEDLRSDRQPEFTQIDMELSFVNTQMIYRIIEGLVKTLWKEAGFNIDYE-F 359
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
+Y +S YG DKPD RYD K++
Sbjct: 360 PFYTYEQVLSTYGIDKPDTRYDMKLV 385
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 148/239 (61%), Gaps = 18/239 (7%)
Query: 653 TVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESH 712
TV+++ + EW + ++K + + + NL+EGD++++S G + V S LG R +
Sbjct: 448 TVQIKSNNEWKSLISKSISEQEKTLITERMNLKEGDVLLISVGPRFQVESTLGKTRI--Y 505
Query: 713 KIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSD----SGTLESAHHPFTQPHPEDEHLLS 768
+ L L +P+ F+ WVVDFPLF PSD L S HHPFT PHPED LL
Sbjct: 506 CANLLKELNLLKLDPQQFNFLWVVDFPLFTPSDYMNEQSALLSTHHPFTAPHPEDIDLLL 565
Query: 769 SNPL-------EVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSSLQ---H 817
NPL ++RG HYD+V+NG E+GGGSIRIH+S++Q +L L +E +Q H
Sbjct: 566 -NPLSTPSDYSKIRGQHYDIVINGVELGGGSIRIHNSDVQLRVLEKVLKLEPHMVQRFNH 624
Query: 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
++ A GCPPHGGIALG DRL S+L + SIRDVIAFPK GGK+ ++ +P + ++E
Sbjct: 625 LLTALSMGCPPHGGIALGFDRLCSLLVNSNSIRDVIAFPKTSGGKELMTSSPATVTKSE 683
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 9 RSHTCGALRLSDVDKTVTLCGW---LQNQRVDMFALLRDAYGQVQVIVPNHQ-------V 58
RSH+CG + D+ K V + GW L+N ++F ++RD +G+VQ V Q V
Sbjct: 76 RSHSCGEITSKDIGKEVIIYGWINSLRNLGDNVFLVIRDGHGKVQCYVDLKQQCILKSSV 135
Query: 59 PNI 61
PNI
Sbjct: 136 PNI 138
>sp|A9WGJ7|SYD_CHLAA Aspartate--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=aspS PE=3 SV=1
Length = 589
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ AS VLN A P +I E +RLK+RYLD R MQ NL R + + R
Sbjct: 94 ELEASEAQVLNPARTP-PIYIAKEGGEDESVRLKYRYLDLRRERMQRNLILRHRVVKFIR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL F+E+ETP L K TP GAR+++VP+ P KFY+L QSPQQLKQLLMV D+
Sbjct: 153 DFLDAE-GFLEIETPILIKSTPEGARDYLVPSRLHPGKFYALPQSPQQLKQLLMVAGYDK 211
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LCYCL----NIPTR 471
YFQIARC+RDE R DRQPEFTQLD+E+SF +DDV+ LIE + LC + ++PT
Sbjct: 212 YFQIARCFRDEDQRADRQPEFTQLDMEMSFVDQDDVLDLIERMFTALCRTVVPHKHLPT- 270
Query: 472 TFSRISYNDAISLYGSDKPDLRYDCKIM 499
F R+SY +A+ YGSDKPDLRY +++
Sbjct: 271 PFRRLSYAEAMERYGSDKPDLRYGLELV 298
Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 127/249 (51%), Gaps = 12/249 (4%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690
+ K+I E ++ + V D E + K L + E GDL+
Sbjct: 334 SRKQIDELTDVVRAGGAKGLAWAVLPTDGGEVRSSFAKNLAPGEFAAIVERMQAEAGDLL 393
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTL 749
++ V ++ + K++ L+ +P + W+VDFPL D
Sbjct: 394 LI-------VADQPAVVAASLDKLRRNLAERLQLADPNTLCFAWIVDFPLVEWNEDEQRW 446
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN 809
++ HHPFT P ED HLL+++P +VR YDL+LNG E GGGSIRIH ++Q+ I L
Sbjct: 447 DAVHHPFTAPKDEDMHLLATDPGKVRAKAYDLILNGYEAGGGSIRIHRRDVQQQIFSLLG 506
Query: 810 IETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHL 865
I Q HM++AF+YG PPHGGIA GIDRL+ IL +IR+V+AFPK D +
Sbjct: 507 ISEELAQAQFGHMLEAFEYGAPPHGGIAPGIDRLVMILADEPTIREVMAFPKTQQAVDLM 566
Query: 866 SGAPCDIPE 874
+ AP + E
Sbjct: 567 TNAPSPVDE 575
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSHTCG LR + + VTL GW+ +R +F LRD YG QV+
Sbjct: 3 RSHTCGELRPAHAGQEVTLAGWVHRRRDHGDLIFIDLRDRYGITQVV 49
>sp|B9LJ78|SYD_CHLSY Aspartate--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=aspS PE=3 SV=1
Length = 589
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ AS VLN A P +I E +RLK+RYLD R MQ NL R + + R
Sbjct: 94 ELEASEAQVLNPARTP-PIYIAKEGGEDESVRLKYRYLDLRRERMQRNLILRHRVVKFIR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL F+E+ETP L K TP GAR+++VP+ P KFY+L QSPQQLKQLLMV D+
Sbjct: 153 DFLDAE-GFLEIETPILIKSTPEGARDYLVPSRLHPGKFYALPQSPQQLKQLLMVAGYDK 211
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LCYCL----NIPTR 471
YFQIARC+RDE R DRQPEFTQLD+E+SF +DDV+ LIE + LC + ++PT
Sbjct: 212 YFQIARCFRDEDQRADRQPEFTQLDMEMSFVDQDDVLDLIERMFTALCRTVVPHKHLPT- 270
Query: 472 TFSRISYNDAISLYGSDKPDLRYDCKIM 499
F R+SY +A+ YGSDKPDLRY +++
Sbjct: 271 PFRRLSYAEAMERYGSDKPDLRYGLELV 298
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 127/249 (51%), Gaps = 12/249 (4%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690
+ K+I E ++ + V D E + K L + E GDL+
Sbjct: 334 SRKQIDELTDVVRAGGAKGLAWAVLPTDGGEVRSSFAKNLAPGEFAAIVERMQAEAGDLL 393
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTL 749
++ V ++ + K++ L+ +P + W+VDFPL D
Sbjct: 394 LI-------VADQPAVVAASLDKLRRNLAERLQLADPNTLCFAWIVDFPLVEWNEDEQRW 446
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN 809
++ HHPFT P ED HLL+++P +VR YDL+LNG E GGGSIRIH ++Q+ I L
Sbjct: 447 DAVHHPFTAPKDEDMHLLATDPGKVRAKAYDLILNGYEAGGGSIRIHRRDVQQQIFSLLG 506
Query: 810 IETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHL 865
I Q HM++AF+YG PPHGGIA GIDRL+ IL +IR+V+AFPK D +
Sbjct: 507 ISEEQAQAQFGHMLEAFEYGAPPHGGIAPGIDRLVMILADEPTIREVMAFPKTQQAVDLM 566
Query: 866 SGAPCDIPE 874
+ AP + E
Sbjct: 567 TNAPSPVDE 575
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSHTCG LR + + VTL GW+ +R +F LRD YG QV+
Sbjct: 3 RSHTCGELRPAHAGQEVTLAGWVHRRRDHGDLIFIDLRDRYGITQVV 49
>sp|B5YDT0|SYD_DICT6 Aspartate--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=aspS PE=3 SV=1
Length = 593
Score = 196 bits (497), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 132/189 (69%), Gaps = 7/189 (3%)
Query: 316 IPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375
+PF++ + + E +RLK+RYLD R +MQ N+ FR F++ R FLA + F+E+ETP
Sbjct: 110 LPFNLWSNKEIDETVRLKYRYLDLRRDKMQSNIIFRHNFILAIRNFLAQN-GFIEIETPY 168
Query: 376 LFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPD 434
L TP GAR+F++P+ +P KFY+L QSPQ KQ+LMV DRYFQIARC+RDE R D
Sbjct: 169 LIVSTPEGARDFIIPSRLQPGKFYALPQSPQLFKQILMVSGFDRYFQIARCFRDEDLRAD 228
Query: 435 RQPEFTQLDIELSFTTRDDVMRLIEEL----LCYCLNIP-TRTFSRISYNDAISLYGSDK 489
RQPEFTQLD+E+SF +D+ +IE L L +NI T F RI+Y +A++ YGSDK
Sbjct: 229 RQPEFTQLDMEMSFVEIEDIFNIIENLFKTTLKNLMNIDITVPFPRITYEEAMNTYGSDK 288
Query: 490 PDLRYDCKI 498
PDLRYD KI
Sbjct: 289 PDLRYDLKI 297
Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 12/195 (6%)
Query: 683 NLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF- 741
NL EGD G+ ++V+ +LG +R E ++ + + WV DFPLF
Sbjct: 383 NLREGDSFFCIAGEWKEVVKILGTLRLEIAEL-------FNIEKKEGLYFLWVTDFPLFE 435
Query: 742 LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQ 801
+ + + HHPFT P ED LL ++PL+V+ YDLVLNG E+G GSIRIH E+Q
Sbjct: 436 YDEEERRIVAEHHPFTSPKDEDIPLLDTDPLKVKAKCYDLVLNGTELGSGSIRIHKKEIQ 495
Query: 802 ESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPK 857
E + + LNI + +++AF+YG PPHGGIALGIDR+++IL + S+RDVIAFPK
Sbjct: 496 EKVFNILNITPEDAKKKFGFLLEAFEYGAPPHGGIALGIDRIIAILTKSNSLRDVIAFPK 555
Query: 858 GFGGKDHLSGAPCDI 872
G L+GAP ++
Sbjct: 556 TQSGTCLLTGAPSEV 570
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
R+H CG + + +V + V+L GW+ R +F LRD G VQ++V
Sbjct: 3 RTHYCGEINIKNVGEKVSLSGWVHRIRHHGGLIFIDLRDRSGIVQLVV 50
>sp|B5RRQ0|SYD_BORRA Aspartate--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=aspS
PE=3 SV=1
Length = 583
Score = 196 bits (497), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 146/216 (67%), Gaps = 11/216 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+IA NI +++K + +PF I+N N A ++ +L++RYLD R E + + RSK + R
Sbjct: 92 EIIAENIDIISKCN-ELPFMIENNNNASDNSKLEYRYLDLRREEQKQKIILRSKVIHIIR 150
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
L T +DF+E+ETPT K TP GAR+F+VP+ FY+L QSPQ KQL M+ +D+
Sbjct: 151 NHL-TKQDFLELETPTFVKSTPEGARDFLVPSRIHKGHFYALPQSPQIYKQLAMIAGLDK 209
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPT-RTF 473
YFQIARCYRDE +R DRQPEFTQLD+E+SF ++++ +LIE L+ LNI + F
Sbjct: 210 YFQIARCYRDEDSRGDRQPEFTQLDLEMSFIKKENIFKLIENLIFTIFKNSLNITLPKKF 269
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM---IAIKEQP 506
+I+Y DA+++YGSDKPD RY+ I A+K+ P
Sbjct: 270 KKITYKDAMNIYGSDKPDTRYELLIQDMSKALKQSP 305
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 99/175 (56%), Gaps = 5/175 (2%)
Query: 713 KIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSSNP 771
+I++K L N F W+ DFPLF D+ + ++AHH F+ P + + L SNP
Sbjct: 404 QIRIKIATELNLINKNIFEFLWIYDFPLFEYDEDTQSYKAAHHMFSMPQAKYINTLESNP 463
Query: 772 LEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL----NIETSSLQHMIQAFKYGCP 827
+V G YD+VLNG E+G GSIR+H+ ELQ+ I + + I ++A +YG P
Sbjct: 464 SKVLGEVYDIVLNGTELGSGSIRVHTKELQQRIFNIVGFNDKIAEERFDFFLKALEYGAP 523
Query: 828 PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNL 882
HGGIA+GIDRL+ ++ + SI+DVI FPK L +P I + + NL
Sbjct: 524 IHGGIAIGIDRLLMLMTNSNSIKDVILFPKNSFAASPLDKSPSKISDEQLKELNL 578
>sp|A7NQH9|SYD_ROSCS Aspartate--tRNA ligase OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=aspS PE=3 SV=1
Length = 589
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A+ T+LN A N P +I E +RLK+RYLD R MQ N+ R + + R
Sbjct: 95 EVHATEATILNPAK-NPPLYINKEGGEDETIRLKYRYLDLRRERMQRNIILRHRIVKFIR 153
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL FVE+ETP L K TP GAR+++VP+ P KFY+L QSPQQLKQLLMV DR
Sbjct: 154 DFL-DREGFVEIETPILIKSTPEGARDYLVPSRLHPGKFYALPQSPQQLKQLLMVAGFDR 212
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LCYCLNIPTR---T 472
YFQIARC+RDE R DRQPEFTQLD+E+SF +DDV+ +IE L LC + R
Sbjct: 213 YFQIARCFRDEDQRADRQPEFTQLDMEMSFVDQDDVLDIIERLFTALCREITPHKRLLTP 272
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F R+++ +A+ +GSDKPDLRY +++
Sbjct: 273 FPRLTFAEAMERFGSDKPDLRYGLELV 299
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 135/252 (53%), Gaps = 14/252 (5%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTK-ILPDLNVEEFRNKENLEEGDL 689
+ K+I E +LA++A + + + E + K + PD R E GDL
Sbjct: 335 SRKQIDEVVDLARQAGAKGLLWAIVPEMGGEVRSSFGKQVSPDEMTAIIRRMEG-APGDL 393
Query: 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GT 748
+++ + V L +R E L +P + + WV+DFPL +D
Sbjct: 394 LLIVADTPKIVAQTLDRLRREFGA-------RLNLADPNTLAWAWVLDFPLVEWNDEEQR 446
Query: 749 LESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL 808
++ HHPFT P ED HL+ S+P +VR YDL+LNG E GGGSIRIH ++Q+ + L
Sbjct: 447 WDAVHHPFTAPKDEDLHLMDSDPGKVRAKAYDLILNGYEAGGGSIRIHQRDVQQRLFDLL 506
Query: 809 NI--ETSSLQ--HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDH 864
I ET+ Q HM++AF+YG PPHGGIA GIDR+ IL +IR+V+AFPK D
Sbjct: 507 GIDRETAMRQFGHMLEAFEYGAPPHGGIAPGIDRICMILADEVTIREVMAFPKTQQAVDL 566
Query: 865 LSGAPCDIPEAE 876
++ AP + E +
Sbjct: 567 MTNAPSPVDERQ 578
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSHTCG LR+ + V L GW+ +R +F LRD YG QV+
Sbjct: 3 RSHTCGELRVEHAGQEVLLAGWVHRRRDHGPLIFIDLRDRYGLTQVV 49
>sp|A0QI91|SYD_MYCA1 Aspartate--tRNA ligase OS=Mycobacterium avium (strain 104) GN=aspS
PE=3 SV=1
Length = 591
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/276 (44%), Positives = 163/276 (59%), Gaps = 22/276 (7%)
Query: 233 NKNGIIIIKDNVASGVKNE-YDDED--SSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMD 289
+ G+I I ASG+ + D D R +FC+ + A L ++ E G +P
Sbjct: 30 DHGGVIFIDLRDASGITQVVFRDPDVLKQAHRLRAEFCV--AVAGLVEIRPE-GNANPEI 86
Query: 290 LWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLR 349
D EV AS++TVL ++ +PF + A E+LRLK+RYLD R +R
Sbjct: 87 ATGD-----IEVNASSLTVLGES-APLPFQLDE--PAGEELRLKYRYLDLRRDAPAAAIR 138
Query: 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLK 408
RSK RE L H DFVE+ETPT+ + TP GAR+F+VP P FY+L QSPQ K
Sbjct: 139 LRSKVNAAAREVLDRH-DFVEIETPTITRSTPEGARDFLVPARLHPGSFYALPQSPQLFK 197
Query: 409 QLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC--- 465
QLLMV ++RY+QIARCYRDE R DRQPEFTQLD+E+SF +DV+ + EE+L
Sbjct: 198 QLLMVAGMERYYQIARCYRDEDFRADRQPEFTQLDMEMSFVDAEDVIAISEEILAALWAL 257
Query: 466 --LNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIM 499
IP R RISY DA++ YGSDKPDLR+ +++
Sbjct: 258 IGYEIP-RPIPRISYADAMARYGSDKPDLRFGLELV 292
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + + ++ AK+ ++ V V + E + K L +
Sbjct: 314 VVMPGGASQPRRTLDGWQEWAKQR-GAKGLAYVLVGEDGELGGPVAKNLSEAERAGLAGH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSE-SHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
GD I + G + +LLG RSE +H+ L +P++++ WVVD PL
Sbjct: 373 VGAAPGDCIFFAAGPAKPSRALLGAARSEIAHR--------LGLIDPQAWAFVWVVDPPL 424
Query: 741 FLPSD-----------SGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIG 789
F P+D SG + HH FT P P E + ++ V YD+V NGNEIG
Sbjct: 425 FEPADDATAAGDVAVGSGAWTAVHHAFTAPKPGYEDAIETDTGNVLADAYDIVCNGNEIG 484
Query: 790 GGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCG 845
GGSIRIH ++QE + + ++ + + +++AF +G PPHGGIA G DR+ ++L
Sbjct: 485 GGSIRIHRRDIQERVFAVMGLDNAEAREKFGFLLEAFTFGAPPHGGIAFGWDRINALLSR 544
Query: 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
SIR+VIAFPK GG D L+ AP I E +R
Sbjct: 545 VDSIREVIAFPKTGGGVDPLTDAPAPITEQQRK 577
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSH G+LR SD + VTL GW+ +R +F LRDA G QV+
Sbjct: 3 RSHAAGSLRSSDAGQQVTLAGWVARRRDHGGVIFIDLRDASGITQVV 49
>sp|A4TBU4|SYD_MYCGI Aspartate--tRNA ligase OS=Mycobacterium gilvum (strain PYR-GCK)
GN=aspS PE=3 SV=1
Length = 590
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A+++TVL ++ +PF + A E+ RLK+RYLD R + +R RSK R
Sbjct: 92 EVNATSLTVLGES-AALPFQLDE--TAGEEARLKYRYLDLRREVPGNAIRLRSKVNAAAR 148
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
LA H DFVE+ETPTL + TP GAR+F+VP +P FY+L QSPQ KQLLMV ++R
Sbjct: 149 GVLAGH-DFVEIETPTLTRSTPEGARDFLVPARLQPGSFYALPQSPQLFKQLLMVAGMER 207
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELL-------CYCLNIPTR 471
Y+QIARCYRDE R DRQPEFTQLD+E+SF DDVM L EE+L Y L +P
Sbjct: 208 YYQIARCYRDEDFRADRQPEFTQLDMEMSFVDADDVMALSEEVLRAVWATIGYDLPLP-- 265
Query: 472 TFSRISYNDAISLYGSDKPDLRYDCKIM 499
RISY DA+ +GSDKPDLR+ +++
Sbjct: 266 -LPRISYADAMRRFGSDKPDLRFGLELV 292
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 133/272 (48%), Gaps = 23/272 (8%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + + ++ AK+ + ++ V V E T + K L D
Sbjct: 314 VVMPGGASQPRRTLDGWQEFAKQRGHK-GLAYVLVGKDGELTGPVAKNLTDAERAGLTAH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741
GD + + G + +LLG R E K L+ +P +++ WVVD+P+F
Sbjct: 373 VGANPGDCVFFAAGTAKSARALLGATRIEVAKR-------LDLIDPDAWAFTWVVDWPMF 425
Query: 742 -----------LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790
+ SG + HH FT P PE E ++P YD+V NGNEIGG
Sbjct: 426 ESAAEATASGDVAVGSGAWTAMHHAFTAPTPESEATFDTDPGSALSNAYDIVCNGNEIGG 485
Query: 791 GSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGT 846
GS+RIH ++QE + + I + +++AF +G PPHGGIA G DR++++L G
Sbjct: 486 GSLRIHRRDVQERVFAMMGISQEEAEDKFGFLLEAFTFGAPPHGGIAFGWDRIVALLAGL 545
Query: 847 QSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
SIR+VIAFPK GG D L+ AP I +R
Sbjct: 546 DSIREVIAFPKSGGGVDPLTEAPAPITAQQRK 577
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQV 58
R+ T G+LR +D +TVTL GW+ +R +F LRDA G QV+ + V
Sbjct: 3 RTRTAGSLRPADAGQTVTLAGWVARRRDHGGVIFIDLRDASGVSQVVFRDGAV 55
>sp|Q5YTJ4|SYD_NOCFA Aspartate--tRNA ligase OS=Nocardia farcinica (strain IFM 10152)
GN=aspS PE=3 SV=1
Length = 597
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 133/205 (64%), Gaps = 11/205 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + VLN++ +PF + + E+ RLKHRYLD R H +R RSK R
Sbjct: 92 EVNVRELEVLNES-APLPFQLDE--QPGEEARLKHRYLDLRREGPAHAIRLRSKVNAAAR 148
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
E LA H +FVEVETPTL K TP GAR+F+VP +P FY+L QSPQ KQLLMVG ++R
Sbjct: 149 EVLARH-EFVEVETPTLTKSTPEGARDFLVPARLQPGNFYALPQSPQLFKQLLMVGGIER 207
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPTRTF 473
YFQIARCYRDE R DRQPEFTQLDIE+SF + DV+ L EE+L IPT
Sbjct: 208 YFQIARCYRDEDFRADRQPEFTQLDIEMSFVEQADVILLAEEILVALWKLIGYEIPT-PI 266
Query: 474 SRISYNDAISLYGSDKPDLRYDCKI 498
++Y +A+ +GSDKPDLR+ +I
Sbjct: 267 PHMTYAEAMRRFGSDKPDLRFGVEI 291
Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 133/276 (48%), Gaps = 23/276 (8%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P +++ ++ AK+ ++ V V + + K L D E
Sbjct: 314 VVMPGGASQPRRQLDAWQEWAKQR-GAKGLAYVLVNEDGSLGGPVAKNLSDAEREGLAKH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741
E GD + + G + +LLG R E + + L +N ++S W+VD PLF
Sbjct: 373 VGAEPGDCVFFAAGPAKAQRALLGAARGE-----IARKVGLIDEN--AWSFVWIVDAPLF 425
Query: 742 LPSDSGTLE-----------SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGG 790
P+D T + HH FT P PE ++P YD+V NGNEIGG
Sbjct: 426 EPADDATASGDVALGHSAWTAVHHAFTSPKPESLDTFDTDPGSALAYAYDIVCNGNEIGG 485
Query: 791 GSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGT 846
GSIRIH ++QE + + I Q ++ AF YG PPHGGIA G DR++++L G
Sbjct: 486 GSIRIHRRDVQERVFKVMGIGEQEAQEKFGFLLDAFAYGAPPHGGIAFGWDRIVALLAGL 545
Query: 847 QSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNL 882
SIR+VIAFPK GG D L+ AP I +R L
Sbjct: 546 DSIREVIAFPKTGGGVDPLTDAPAPITAQQRKEAGL 581
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
R+H G+LR +TVTL GW+ +R +F LRDA G Q +
Sbjct: 3 RTHLAGSLRSEHAGQTVTLTGWVARRRDHGGVIFIDLRDASGVSQAV 49
>sp|Q3AGF9|SYD_SYNSC Aspartate--tRNA ligase OS=Synechococcus sp. (strain CC9605) GN=aspS
PE=3 SV=1
Length = 609
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 141/208 (67%), Gaps = 11/208 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK--AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
EV+AS ITVLN N+PF + +++ +E+LRL+HRYLD R M NLR R++ +
Sbjct: 94 EVLASGITVLNSVKGNLPFPVSVHDEENTREELRLRHRYLDLRRKRMNDNLRLRAQTIQA 153
Query: 358 TREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSV 416
R FL F+EVETP L + TP GAR++++P+ ++++L QSPQ KQLLMVG +
Sbjct: 154 ARRFLEDA-GFIEVETPVLTRSTPEGARDYLLPSRVCGGEWFALPQSPQLFKQLLMVGGI 212
Query: 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC------LNIPT 470
+RY+Q+ARC+RDE R DRQPEFTQLDIE+SF ++ ++ L E L+C + +P
Sbjct: 213 ERYYQMARCFRDEDLRADRQPEFTQLDIEMSFMDQEQILELNESLICAIWKTVKGIELP- 271
Query: 471 RTFSRISYNDAISLYGSDKPDLRYDCKI 498
R F RI+++DA+ YG+D+PD RY ++
Sbjct: 272 RPFPRITWHDAMEHYGTDRPDTRYGMEL 299
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 14/237 (5%)
Query: 651 MSTVKVQDS--LEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708
++ ++V+D ++ + L D +E ++ E G L++ G V L +R
Sbjct: 359 LAFIRVRDGGEIDTIGAIKDNLSDEQRQELLSRTGAEPGTLLLFGAGDTATVNKALDRVR 418
Query: 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLL 767
+ K + + DN + ++ WVVDFP+F D E+ HHPF P+ ED
Sbjct: 419 Q--YLAKELGMVKADRDNDQ-WNFLWVVDFPMFEFNGDENRYEALHHPFCAPNAEDLGGD 475
Query: 768 SSNPLE----VRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MI 819
+S E R YDLVLNG E+GGGS+RIH S LQ +L + + Q ++
Sbjct: 476 ASKWSETLPGARAQAYDLVLNGLELGGGSLRIHDSTLQRQVLQTVGLTLEEAQEQFGFLM 535
Query: 820 QAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAE 876
A G PPHGG+A G+DR++ +L G +SIRD IAFPK + ++ AP + + +
Sbjct: 536 DALDVGAPPHGGLAFGVDRMVMLLAGEESIRDTIAFPKTQQARCLMTSAPGGVADKQ 592
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
RS+ CG LR ++D+ V LCGW+ +R +F LRD G VQ+ V
Sbjct: 2 RSNGCGDLREQNIDQQVQLCGWVDRRRDHGGVIFIDLRDRSGTVQITV 49
>sp|Q741M7|SYD_MYCPA Aspartate--tRNA ligase OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=aspS PE=3 SV=1
Length = 591
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 137/206 (66%), Gaps = 11/206 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV AS++TVL ++ +PF + A E+LRLK+RYLD R +R RSK R
Sbjct: 92 EVNASSLTVLGES-APLPFQLDE--PAGEELRLKYRYLDLRRDAPASAIRLRSKVNAAAR 148
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
E L H DFVE+ETPT+ + TP GAR+F+VP P FY+L QSPQ KQLLMV ++R
Sbjct: 149 EVLDRH-DFVEIETPTITRSTPEGARDFLVPARLHPGSFYALPQSPQLFKQLLMVAGMER 207
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC-----LNIPTRTF 473
Y+QIARCYRDE R DRQPEFTQLD+E+SF +DV+ + EE+L +IP R
Sbjct: 208 YYQIARCYRDEDFRADRQPEFTQLDMEMSFVDAEDVIAISEEILAALWALIGYDIP-RPI 266
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
RISY DA++ YGSDKPDLR+ +++
Sbjct: 267 PRISYADAMARYGSDKPDLRFGLELV 292
Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + + ++ AK+ ++ V V + E + K L +
Sbjct: 314 VVMPGGASQPRRTLDGWQEWAKQR-GAKGLAYVLVGEDGELGGPVAKNLSEAERAGLAGH 372
Query: 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSE-SHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
GD I + G + +LLG RSE +H+ L +P++++ WVVD PL
Sbjct: 373 VGAAPGDCIFFAAGPAKPSRALLGAARSEIAHR--------LGLIDPQAWAFVWVVDPPL 424
Query: 741 FLPSD-----------SGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIG 789
F P+D SG + HH FT P P E + ++ V YD+V NGNEIG
Sbjct: 425 FEPADDATAAGDVAVGSGAWTAVHHAFTAPKPGYEDAIETDTGNVLADAYDIVCNGNEIG 484
Query: 790 GGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCG 845
GGSIRIH ++QE + + ++ + Q +++AF +G PPHGGIA G DR+ ++L
Sbjct: 485 GGSIRIHRRDIQERVFAVMGLDHAEAQEKFGFLLEAFTFGAPPHGGIAFGWDRINALLSR 544
Query: 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERN 878
SIR+VIAFPK GG D L+ AP I E +R
Sbjct: 545 VDSIREVIAFPKTGGGVDPLTDAPAPITEQQRK 577
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSH G+LR SD + VTL GW+ +R +F LRDA G QV+
Sbjct: 3 RSHAAGSLRSSDAGQQVTLAGWVARRRDHGGVIFIDLRDASGITQVV 49
>sp|Q0AYS1|SYD_SYNWW Aspartate--tRNA ligase OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=aspS PE=3 SV=1
Length = 586
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 140/206 (67%), Gaps = 8/206 (3%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV +I VL+ A PF+I+N E+LRLK+RYLD R PEM+ NL R + + R
Sbjct: 95 EVYVEDIEVLSPAKTP-PFYIENDIDVDENLRLKYRYLDLRRPEMRDNLLLRHRVVKCMR 153
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL + R F+E+ETP L K TP GAR+++VP+ P +FY+L QSPQ KQ+LMV +++
Sbjct: 154 DFLDS-RGFIEIETPILTKSTPEGARDYLVPSRVHPGEFYALPQSPQIFKQILMVAGMEK 212
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL-----NIPTRTF 473
YFQIARC+RDE R DRQPEFTQLD+E+SF +D++ L+EE++ + F
Sbjct: 213 YFQIARCFRDEDLRADRQPEFTQLDMEMSFVDEEDIIVLVEEMMAEIFFKAAGKVIRTPF 272
Query: 474 SRISYNDAISLYGSDKPDLRYDCKIM 499
R++Y+DA+ YGSDKPDLR+ +I+
Sbjct: 273 PRLAYDDAMINYGSDKPDLRFGLEIV 298
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 13/227 (5%)
Query: 651 MSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSE 710
M+ + VQ++ E + +TK L + +E+ E GDLI+ + E V ++G++R E
Sbjct: 353 MAWILVQEN-ELRSPITKFLSEEEIEQILMTTGAEAGDLILFGADQAEIVARVMGILRLE 411
Query: 711 SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTLESAHHPFTQPHPEDEHLLSS 769
+ K L E + + WV DFPL + ++ HHPFT P ED ++ S
Sbjct: 412 LGR---KKGLIAE----EELNFVWVTDFPLLEYDEEEKRYQAKHHPFTSPRLEDIEIMDS 464
Query: 770 NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQH----MIQAFKYG 825
P V+ YDLVLNG E+GGGSIRIH E QE + L + + M++AF+YG
Sbjct: 465 EPGRVKARAYDLVLNGTELGGGSIRIHRREWQEKMFSVLGMSQEEARDKFGFMLEAFEYG 524
Query: 826 CPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDI 872
PPHGGIA G+DRL+ +L G S+RDV+AFPK ++ AP +
Sbjct: 525 TPPHGGIAFGVDRLLMLLAGRNSVRDVMAFPKTQSASCPMTEAPSTV 571
>sp|A8LXY1|SYD_SALAI Aspartate--tRNA ligase OS=Salinispora arenicola (strain CNS-205)
GN=aspS PE=3 SV=1
Length = 604
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 165/273 (60%), Gaps = 19/273 (6%)
Query: 233 NKNGIIIIKDNVASGVKNEY-DDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291
+ G+I + SGV +ED+ V+R+ ++C+ + + + +G +P
Sbjct: 30 DHGGVIFVDLRDGSGVAQVVLREEDAHVLRN--EYCVRITG---EVTRRPEGNENP---- 80
Query: 292 EDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFR 351
+ EV A + VL++A +P + + +A +D+RL++RYLD R + LR R
Sbjct: 81 -ELATGEVEVTADELEVLSEA-APLPLPVDDQIEAGDDIRLRYRYLDLRRSGPANALRLR 138
Query: 352 SKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQL 410
S+ R L RDF+E+ETPTL + TP GAR+F+VP +P +Y+L QSPQ KQL
Sbjct: 139 SRANQIARTVL-HERDFLEIETPTLTRSTPEGARDFLVPVRLQPGTWYALPQSPQLFKQL 197
Query: 411 LMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-----YC 465
LMVG ++RY+QIARCYRDE R DRQPEFTQLDIE+SF T DDV+ L E ++
Sbjct: 198 LMVGGMERYYQIARCYRDEDFRADRQPEFTQLDIEMSFVTEDDVIDLGEAIVSRLWRQLA 257
Query: 466 LNIPTRTFSRISYNDAISLYGSDKPDLRYDCKI 498
+ TR RI+++DA++ YGSDKPDLRY ++
Sbjct: 258 GHQITRPIPRITWHDAMARYGSDKPDLRYGVEL 290
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681
+++P + K++ +++ AK V ++ E + K L ++ +
Sbjct: 318 VVMPGGAAQSRKELDGWQDWAKARGAKGLAYVVLDAETGEARGPVAKNLSAEHLAGLADA 377
Query: 682 ENLEEGDLIVVSWGKQEDVLS-LLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
+ GD I + G + LLG R E I + L E +++ WVVD P+
Sbjct: 378 VGAKPGDAIFFAAGAESRAAQELLGAARVE---IARRANLVDE----SAWAFCWVVDAPM 430
Query: 741 F---LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHS 797
F S+ G + HHPFT P+ E P YD+V NGNEIGGGSIRIH
Sbjct: 431 FERVSDSEEGGWTAVHHPFTAPNAEWVDRFEEAPDRALAYAYDIVCNGNEIGGGSIRIHR 490
Query: 798 SELQESILHFLNIETSSLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853
++Q+ + L I + +++AFKYG PPHGGIALG DR+ +L G SIR+VI
Sbjct: 491 GDVQQRVFDLLGITPEQARDKFGFLLEAFKYGPPPHGGIALGWDRICMLLAGADSIREVI 550
Query: 854 AFPKGFGGKDHLSGAPCDIPEAER 877
AFPK GG D L+ AP I A+R
Sbjct: 551 AFPKTRGGFDPLTSAPTPITAAQR 574
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIV 53
R+H G+LR +D TVTL GW+ +R +F LRD G QV++
Sbjct: 3 RTHDAGSLRATDAGTTVTLAGWVARRRDHGGVIFVDLRDGSGVAQVVL 50
>sp|A5UUR3|SYD_ROSS1 Aspartate--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=aspS
PE=3 SV=1
Length = 589
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A+ TVLN A P +I +E LRLK+RYLD R MQ N+ R + + R
Sbjct: 95 EVHATEATVLNPAKTP-PLYINKEGGEEETLRLKYRYLDLRRERMQRNIMLRHRIVKFIR 153
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL FVE+ETP L K TP GAR+++VP+ P KFY+L QSPQQLKQLLMV DR
Sbjct: 154 DFL-DREGFVEIETPILIKSTPEGARDYLVPSRLHPGKFYALPQSPQQLKQLLMVAGFDR 212
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELL-CYCLNI-PTRT---- 472
YFQIARC+RDE R DRQPEFTQLD+E+SF + DV+ +IE L C I P +
Sbjct: 213 YFQIARCFRDEDQRADRQPEFTQLDMEMSFVDQGDVLDIIERLFTALCREIVPHKRLVTP 272
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F R++Y +A+ +GSDKPDLRY +++
Sbjct: 273 FPRLTYAEAMERFGSDKPDLRYGLELV 299
Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 133/259 (51%), Gaps = 14/259 (5%)
Query: 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTK-ILPDLNVEEFRN 680
L +P + K+I E LAK+A + V + E + + + PD R
Sbjct: 326 LRIPGAGSYSRKQIDEVVELAKQAGARGLLWAVVPGEGGEVRSSFGRQVSPDEMAAIIRR 385
Query: 681 KENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPL 740
E GDL+++ + V L +R E L +P + WV+DFPL
Sbjct: 386 MEG-APGDLLLIVADPPKIVAQTLDRLRREFGA-------RLNLADPNVLAWAWVIDFPL 437
Query: 741 F-LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSE 799
+ ++ HHPFT P ED HL+ ++P VR YDL+LNG E GGGSIRIH +
Sbjct: 438 VEWNEEEQRWDAVHHPFTAPKDEDLHLMDTDPGRVRAKAYDLILNGYEAGGGSIRIHRRD 497
Query: 800 LQESILHFLNI--ETSSLQ--HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855
+Q+ + L I ET+ Q HM++AF+YG PPHGGIA GIDR+ IL +IR+V+AF
Sbjct: 498 VQQRLFDLLGIDRETAMRQFGHMLEAFEYGAPPHGGIAPGIDRICMILADEVTIREVMAF 557
Query: 856 PKGFGGKDHLSGAPCDIPE 874
PK D ++ AP + E
Sbjct: 558 PKTQQAVDLMTNAPSPVDE 576
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPNIYRTS 65
RSHTCG LR + + V L GW+ +R +F LRD YG Q++ + P + +
Sbjct: 3 RSHTCGELRAEHIGQEVLLAGWVHRRRDHGPLIFIDLRDRYGITQIVFDSADSPVAHAVA 62
Query: 66 TLASL 70
+ A +
Sbjct: 63 SDARV 67
>sp|Q3ZX84|SYD_DEHSC Aspartate--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1)
GN=aspS PE=3 SV=1
Length = 598
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 138/206 (66%), Gaps = 9/206 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+A N +LN A PF+I + E LRLK+RYLD R M++NL R K + R
Sbjct: 94 EVVAVNAKILNAAKTP-PFYINEEVEVDESLRLKYRYLDIRRQGMKNNLIIRHKAVRFMR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDR 418
EFL + F+E+ETP L K TP GAR+++VP+ P KF++L QSPQQLKQLLMV +++
Sbjct: 153 EFL-NDQGFIEIETPILIKSTPEGARDYLVPSRLFPGKFFALPQSPQQLKQLLMVAGMEK 211
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLC-YCLNIP-----TRT 472
Y+Q+ARC+RDE R DRQPEFTQLD+E+SF +D+M+L+E+L N+ +
Sbjct: 212 YYQVARCFRDEDLRADRQPEFTQLDMEMSFVDEEDMMKLMEDLFTGLVANVRPDMKYNKK 271
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKI 498
F RIS+ DA+ YG DKPDLR+ ++
Sbjct: 272 FPRISFADAMEKYGCDKPDLRFGMEL 297
Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 119/205 (58%), Gaps = 15/205 (7%)
Query: 673 LNVEEFRN---KENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKS 729
L +EE + + + GDLI++ G ++ V ++LG +R++ + VK L +
Sbjct: 381 LALEEIKTIAERSGAKPGDLILIVAGARKMVNTVLGEMRNQ---LAVK----LNLCDKNE 433
Query: 730 FSIFWVVDFPLFLPSDSGT-LESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEI 788
S +VVDFPLF + G +S HHPFT P D L+ ++P V YD+V NG EI
Sbjct: 434 LSFAFVVDFPLFQWDEEGKRWDSVHHPFTAPLESDMPLMDTDPGRVGSRAYDVVCNGYEI 493
Query: 789 GGGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILC 844
GGSIRIH ++LQ + H L + H+++AF++G PPHGG+A GIDR + +L
Sbjct: 494 AGGSIRIHQADLQRKVFHLLGYNDEQIDERFGHLLEAFEFGAPPHGGVAPGIDRFVMLLA 553
Query: 845 GTQSIRDVIAFPKGFGGKDHLSGAP 869
G SIR+VI+FPK +D L GAP
Sbjct: 554 GETSIREVISFPKNQAAQDLLFGAP 578
>sp|B8G6W9|SYD_CHLAD Aspartate--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=aspS PE=3 SV=1
Length = 588
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV A VLN A P +I E +RLK+RYLD R MQ NL R + + R
Sbjct: 94 EVDAFEAQVLNPARTP-PIYIAKEAGEDESVRLKYRYLDLRRERMQRNLILRHRVVKFIR 152
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDR 418
+FL F+E+ETP L K TP GAR+++VP+ P KFY+L QSPQQLKQLLMV D+
Sbjct: 153 DFLDAE-GFIEIETPILIKSTPEGARDYLVPSRLHPGKFYALPQSPQQLKQLLMVAGYDK 211
Query: 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEEL---LCYCLNIPTR---T 472
YFQIARC+RDE R DRQPEFTQLD+E+SF ++DV+ LIE L LC + R
Sbjct: 212 YFQIARCFRDEDQRADRQPEFTQLDMEMSFVDQEDVINLIERLFTELCRTVTPHKRLLTP 271
Query: 473 FSRISYNDAISLYGSDKPDLRYDCKIM 499
F R++Y +A+ YGSDKPDLRYD +++
Sbjct: 272 FRRLTYAEAMERYGSDKPDLRYDLELV 298
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 129/249 (51%), Gaps = 12/249 (4%)
Query: 631 TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690
+ K+I E +A+ V D + + K L + + + GDL+
Sbjct: 334 SRKQIDELTEVARSGGAKGLAWAVVPTDGGDVRSSFAKNLAPGEFDALAQRMGAQPGDLL 393
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF-LPSDSGTL 749
++ + V + L +R + + L+ +P + WVVDFPL +
Sbjct: 394 LIVADRPVVVAASLDKLRRKLADL-------LQLADPDTLCFAWVVDFPLVEWNEEEQRW 446
Query: 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN 809
++ HHPFT P ED HLL+++P +VR YDL+LNG E GGGSIRIH ++Q+ + L
Sbjct: 447 DAVHHPFTSPKDEDLHLLATDPGKVRAKAYDLILNGYEAGGGSIRIHRRDVQQQVFSLLG 506
Query: 810 IETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHL 865
I Q HM++AF+YG PPHGGIA GIDRL+ IL +IR+V+AFPK D +
Sbjct: 507 IGEEKAQAQFGHMLEAFEYGAPPHGGIAPGIDRLVMILADEPTIREVMAFPKTQQAVDLM 566
Query: 866 SGAPCDIPE 874
+ AP + E
Sbjct: 567 TNAPSPVDE 575
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVI 52
RSHTCG LR + + VTL GW+ +R +F LRD YG QV+
Sbjct: 3 RSHTCGELRPAHAGQEVTLAGWVHRRRDHGDLIFIDLRDRYGITQVV 49
>sp|Q8EWB7|SYD_MYCPE Aspartate--tRNA ligase OS=Mycoplasma penetrans (strain HF-2)
GN=aspS PE=3 SV=1
Length = 580
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 132/188 (70%), Gaps = 7/188 (3%)
Query: 317 PFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376
PF I++ EDLRLK+RYLD R P MQ+N+ R K + R FL + +F E+ETP L
Sbjct: 109 PFLIQDDTDGLEDLRLKYRYLDLRRPVMQNNIINRGKIINLFRSFLVKN-NFNEIETPYL 167
Query: 377 FKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ 436
K+TP GAR+++VPT KF++L QSPQ KQLLMV +DRYFQIARC+RDE R DRQ
Sbjct: 168 SKQTPEGARDYLVPTR-SKKFFALPQSPQIYKQLLMVSGMDRYFQIARCFRDEDLRADRQ 226
Query: 437 PEFTQLDIELSFTTRDDVMRLIEELLCYC----LNIPTRT-FSRISYNDAISLYGSDKPD 491
PEFTQ+DIE SF + ++ +++E+ Y NI +T F+R+SY+DAI YGSDKPD
Sbjct: 227 PEFTQIDIETSFLSDLEIQSIVQEMFIYVFKEFFNIKLKTPFTRMSYSDAIEYYGSDKPD 286
Query: 492 LRYDCKIM 499
+R++ KIM
Sbjct: 287 IRFENKIM 294
Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 130/243 (53%), Gaps = 30/243 (12%)
Query: 639 KNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQE 698
K LA + KMS+ + + +E + + KI D NK L G L V+ K E
Sbjct: 345 KGLAYLYIENGKMSSGSIANVIE-SEIIEKICKD-------NK--LSNGTLFFVA-DKYE 393
Query: 699 DVLSLLGMIRSE----SHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAH 753
LG IR E S KIK+ + F+ WVVD+PLF S+ SAH
Sbjct: 394 ITQQALGAIRKEFVNISKKIKMN----------EEFAFLWVVDWPLFEYSEEEKRYVSAH 443
Query: 754 HPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
HPFT P E +P + + YDLVLNG EIGGGS+RI++SELQ + FL + S
Sbjct: 444 HPFTMPTAETLDTFDKDPANAKAIAYDLVLNGFEIGGGSLRIYNSELQTRMFKFLGLNDS 503
Query: 814 SLQH----MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAP 869
++ +I AFKYG PPHGGIA GI+R++ I+ T SIRDVIAFPK G D L P
Sbjct: 504 QVKEKFGFIINAFKYGVPPHGGIAFGIERILMIMLNTNSIRDVIAFPKNSSGVDLLFETP 563
Query: 870 CDI 872
D+
Sbjct: 564 SDV 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,851,967
Number of Sequences: 539616
Number of extensions: 14959276
Number of successful extensions: 45395
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 37214
Number of HSP's gapped (non-prelim): 4042
length of query: 883
length of database: 191,569,459
effective HSP length: 126
effective length of query: 757
effective length of database: 123,577,843
effective search space: 93548427151
effective search space used: 93548427151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)