Query psy8372
Match_columns 883
No_of_seqs 670 out of 4925
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0173 AspS Aspartyl-tRNA syn 100.0 1E-138 3E-143 1153.1 48.2 482 295-883 89-581 (585)
2 PLN02903 aminoacyl-tRNA ligase 100.0 6E-123 1E-127 1076.7 50.5 477 297-883 148-646 (652)
3 PRK12820 bifunctional aspartyl 100.0 2E-122 4E-127 1082.2 48.4 480 297-883 95-599 (706)
4 TIGR00459 aspS_bact aspartyl-t 100.0 2E-121 4E-126 1062.2 49.6 479 297-883 89-578 (583)
5 PRK00476 aspS aspartyl-tRNA sy 100.0 3E-120 6E-125 1062.1 48.1 480 297-883 91-583 (588)
6 KOG2411|consensus 100.0 2E-117 5E-122 958.9 37.2 484 295-883 121-622 (628)
7 COG0017 AsnS Aspartyl/asparagi 100.0 1E-75 2.2E-80 648.0 35.2 322 297-861 85-432 (435)
8 PRK00484 lysS lysyl-tRNA synth 100.0 3.1E-73 6.8E-78 656.2 32.0 341 298-860 123-489 (491)
9 PRK05159 aspC aspartyl-tRNA sy 100.0 3E-72 6.6E-77 642.8 35.0 326 298-860 86-433 (437)
10 TIGR00458 aspS_arch aspartyl-t 100.0 8.1E-72 1.8E-76 636.5 37.5 321 298-860 83-424 (428)
11 PLN02502 lysyl-tRNA synthetase 100.0 1.1E-69 2.4E-74 628.7 37.8 345 298-860 180-551 (553)
12 TIGR00499 lysS_bact lysyl-tRNA 100.0 1.1E-69 2.3E-74 626.8 32.2 350 294-860 119-494 (496)
13 PRK12445 lysyl-tRNA synthetase 100.0 3.4E-69 7.4E-74 622.2 32.0 347 294-860 131-503 (505)
14 PTZ00401 aspartyl-tRNA synthet 100.0 1.9E-68 4.1E-73 618.1 30.0 369 293-860 150-546 (550)
15 PLN02850 aspartate-tRNA ligase 100.0 1.5E-67 3.3E-72 610.8 32.5 349 297-860 157-526 (530)
16 PTZ00385 lysyl-tRNA synthetase 100.0 2.4E-67 5.2E-72 611.2 33.7 355 294-861 174-565 (659)
17 PF00152 tRNA-synt_2: tRNA syn 100.0 7.8E-69 1.7E-73 598.2 20.4 313 327-860 1-335 (335)
18 PRK02983 lysS lysyl-tRNA synth 100.0 3.6E-67 7.8E-72 649.7 36.5 341 298-860 721-1092(1094)
19 COG1190 LysU Lysyl-tRNA synthe 100.0 1.3E-67 2.7E-72 585.0 28.6 350 293-861 126-501 (502)
20 KOG0556|consensus 100.0 4.9E-68 1.1E-72 563.7 21.6 382 262-860 127-529 (533)
21 PLN02532 asparagine-tRNA synth 100.0 3.9E-67 8.4E-72 607.2 30.3 327 296-860 185-629 (633)
22 PTZ00417 lysine-tRNA ligase; P 100.0 6.8E-66 1.5E-70 598.7 31.2 349 293-860 200-583 (585)
23 PTZ00425 asparagine-tRNA ligas 100.0 9.2E-66 2E-70 593.6 30.4 350 296-861 159-583 (586)
24 TIGR00457 asnS asparaginyl-tRN 100.0 7.4E-65 1.6E-69 582.0 30.0 349 298-860 88-449 (453)
25 PLN02603 asparaginyl-tRNA synt 100.0 1.1E-64 2.4E-69 586.5 28.6 353 296-861 177-562 (565)
26 PLN02221 asparaginyl-tRNA synt 100.0 2.8E-64 6E-69 583.0 28.9 329 297-862 122-570 (572)
27 PRK03932 asnC asparaginyl-tRNA 100.0 1.1E-64 2.3E-69 581.4 25.2 323 298-860 86-446 (450)
28 cd00776 AsxRS_core Asx tRNA sy 100.0 2.5E-62 5.5E-67 540.4 27.2 294 326-859 2-321 (322)
29 cd00777 AspRS_core Asp tRNA sy 100.0 3.7E-62 8.1E-67 527.9 23.7 270 348-860 1-280 (280)
30 PRK06462 asparagine synthetase 100.0 1.1E-60 2.5E-65 529.2 28.3 293 326-861 8-332 (335)
31 KOG1885|consensus 100.0 6.1E-61 1.3E-65 518.1 19.6 374 293-860 171-556 (560)
32 cd00775 LysRS_core Lys_tRNA sy 100.0 1.6E-59 3.4E-64 519.3 29.8 303 341-859 1-328 (329)
33 TIGR00462 genX lysyl-tRNA synt 100.0 1.9E-59 4E-64 513.3 26.5 291 348-855 1-304 (304)
34 cd00669 Asp_Lys_Asn_RS_core As 100.0 6.6E-59 1.4E-63 499.8 26.0 262 348-859 1-268 (269)
35 KOG0554|consensus 100.0 5.1E-56 1.1E-60 473.5 20.4 327 294-862 81-444 (446)
36 PRK09350 poxB regulator PoxA; 100.0 3.7E-54 7.9E-59 472.0 26.8 291 345-852 2-306 (306)
37 KOG0555|consensus 100.0 1E-51 2.3E-56 437.3 17.0 328 293-858 189-539 (545)
38 COG2269 Truncated, possibly in 100.0 2.1E-43 4.6E-48 363.7 21.0 294 345-859 13-321 (322)
39 PF05891 Methyltransf_PK: AdoM 99.9 7.4E-25 1.6E-29 223.7 11.2 209 82-292 2-211 (218)
40 PF01209 Ubie_methyltran: ubiE 99.7 5.7E-18 1.2E-22 179.3 10.8 146 133-282 46-220 (233)
41 COG2226 UbiE Methylase involve 99.7 3.5E-17 7.5E-22 172.0 12.5 157 114-279 36-221 (238)
42 PLN02233 ubiquinone biosynthes 99.7 1.8E-16 4E-21 171.1 12.6 146 133-282 72-248 (261)
43 PLN02244 tocopherol O-methyltr 99.7 1.8E-15 3.8E-20 169.5 18.5 146 133-282 117-278 (340)
44 PLN02396 hexaprenyldihydroxybe 99.7 1.2E-15 2.6E-20 168.5 15.2 145 134-283 131-290 (322)
45 PTZ00098 phosphoethanolamine N 99.6 3.2E-15 6.8E-20 161.7 16.2 159 114-281 37-201 (263)
46 PRK11207 tellurite resistance 99.6 8.9E-15 1.9E-19 151.5 15.5 141 134-282 30-170 (197)
47 PF13489 Methyltransf_23: Meth 99.6 3.4E-15 7.5E-20 147.9 11.9 144 118-279 9-160 (161)
48 COG2230 Cfa Cyclopropane fatty 99.6 2E-14 4.4E-19 153.7 16.6 149 129-282 67-223 (283)
49 TIGR02752 MenG_heptapren 2-hep 99.6 1.1E-14 2.4E-19 154.1 14.4 147 133-283 44-219 (231)
50 TIGR00452 methyltransferase, p 99.6 1.7E-14 3.6E-19 158.8 16.1 145 133-282 120-273 (314)
51 PF02353 CMAS: Mycolic acid cy 99.6 1.5E-14 3.2E-19 156.7 15.1 190 83-278 11-213 (273)
52 COG2227 UbiG 2-polyprenyl-3-me 99.6 2.5E-15 5.5E-20 155.4 8.5 108 134-247 59-166 (243)
53 PRK14103 trans-aconitate 2-met 99.6 7.9E-15 1.7E-19 157.9 12.4 134 133-278 28-180 (255)
54 PRK11036 putative S-adenosyl-L 99.6 1.5E-14 3.2E-19 155.8 14.5 143 133-279 43-204 (255)
55 PF08241 Methyltransf_11: Meth 99.6 1.5E-14 3.2E-19 129.9 10.9 95 139-240 1-95 (95)
56 PF12847 Methyltransf_18: Meth 99.6 3.4E-14 7.3E-19 132.6 13.3 106 134-242 1-111 (112)
57 PRK15068 tRNA mo(5)U34 methylt 99.6 2.8E-14 6.1E-19 158.4 14.7 144 134-282 122-274 (322)
58 TIGR00477 tehB tellurite resis 99.5 8.5E-14 1.8E-18 143.9 16.1 140 134-282 30-169 (195)
59 smart00828 PKS_MT Methyltransf 99.5 7.2E-14 1.6E-18 147.2 13.9 141 137-282 2-144 (224)
60 PRK10258 biotin biosynthesis p 99.5 3.9E-14 8.4E-19 152.0 12.1 119 113-246 26-144 (251)
61 PF13847 Methyltransf_31: Meth 99.5 8.1E-14 1.8E-18 138.0 13.4 109 133-244 2-112 (152)
62 PRK15451 tRNA cmo(5)U34 methyl 99.5 9.3E-14 2E-18 148.9 13.2 108 133-244 55-166 (247)
63 KOG1540|consensus 99.5 1E-13 2.2E-18 143.2 12.7 157 119-279 85-278 (296)
64 PLN02336 phosphoethanolamine N 99.5 1.7E-13 3.8E-18 160.5 15.9 143 133-280 265-412 (475)
65 KOG1270|consensus 99.5 4.9E-14 1.1E-18 146.6 9.8 140 135-282 90-249 (282)
66 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.2E-13 2.7E-18 153.1 13.5 143 133-282 112-256 (340)
67 TIGR00740 methyltransferase, p 99.5 1.3E-13 2.8E-18 147.0 13.1 144 133-280 52-225 (239)
68 PLN02336 phosphoethanolamine N 99.5 2.7E-13 5.9E-18 158.9 15.4 146 134-282 37-182 (475)
69 PF03848 TehB: Tellurite resis 99.5 3.1E-13 6.6E-18 138.0 13.5 137 134-279 30-166 (192)
70 PRK11873 arsM arsenite S-adeno 99.5 2.1E-13 4.6E-18 148.2 13.2 145 133-281 76-229 (272)
71 PRK12335 tellurite resistance 99.5 6E-13 1.3E-17 145.8 16.3 138 135-281 121-258 (287)
72 TIGR03840 TMPT_Se_Te thiopurin 99.5 6.3E-13 1.4E-17 139.1 15.3 134 133-272 33-178 (213)
73 PF08242 Methyltransf_12: Meth 99.5 1.3E-14 2.7E-19 132.9 2.0 98 139-238 1-99 (99)
74 TIGR02072 BioC biotin biosynth 99.5 3.9E-13 8.5E-18 142.1 12.4 154 113-277 15-171 (240)
75 PF08003 Methyltransf_9: Prote 99.4 9.3E-13 2E-17 141.0 14.8 143 134-281 115-266 (315)
76 PF13649 Methyltransf_25: Meth 99.4 3.4E-13 7.4E-18 124.1 8.6 96 138-236 1-101 (101)
77 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.7E-12 5.8E-17 134.4 15.9 144 133-282 38-210 (223)
78 PRK01683 trans-aconitate 2-met 99.4 6.6E-13 1.4E-17 143.1 11.5 111 117-242 19-130 (258)
79 TIGR02021 BchM-ChlM magnesium 99.4 1.9E-12 4.1E-17 136.2 13.9 144 133-282 54-206 (219)
80 PRK00216 ubiE ubiquinone/menaq 99.4 3.2E-12 6.9E-17 135.3 14.5 145 134-282 51-225 (239)
81 PRK08317 hypothetical protein; 99.4 4.4E-12 9.6E-17 133.9 15.4 107 133-244 18-126 (241)
82 PRK13255 thiopurine S-methyltr 99.4 5.7E-12 1.2E-16 132.4 15.4 134 133-272 36-181 (218)
83 PRK11705 cyclopropane fatty ac 99.4 7.4E-12 1.6E-16 142.2 17.1 105 133-245 166-270 (383)
84 PRK07580 Mg-protoporphyrin IX 99.4 4.9E-12 1.1E-16 133.6 14.6 144 133-282 62-214 (230)
85 TIGR03587 Pse_Me-ase pseudamin 99.4 5.9E-12 1.3E-16 131.1 14.8 104 133-246 42-146 (204)
86 TIGR02716 C20_methyl_CrtF C-20 99.4 4.5E-12 9.7E-17 140.2 14.7 143 132-279 147-303 (306)
87 TIGR01983 UbiG ubiquinone bios 99.4 5.1E-12 1.1E-16 133.0 14.3 150 134-287 45-208 (224)
88 PLN02585 magnesium protoporphy 99.4 8.3E-12 1.8E-16 137.7 15.8 140 134-281 144-298 (315)
89 PRK05134 bifunctional 3-demeth 99.4 9.5E-12 2.1E-16 132.0 15.7 144 133-281 47-204 (233)
90 KOG4300|consensus 99.4 3.4E-12 7.3E-17 128.1 11.2 148 133-284 75-234 (252)
91 TIGR00138 gidB 16S rRNA methyl 99.4 6.4E-12 1.4E-16 128.3 13.4 127 134-285 42-172 (181)
92 PRK00107 gidB 16S rRNA methylt 99.4 1E-11 2.2E-16 127.4 14.7 139 115-279 27-166 (187)
93 PRK06202 hypothetical protein; 99.4 7.3E-12 1.6E-16 132.9 14.2 140 133-280 59-220 (232)
94 PRK05785 hypothetical protein; 99.4 6.6E-12 1.4E-16 132.8 13.8 129 83-235 12-140 (226)
95 COG4106 Tam Trans-aconitate me 99.4 1.3E-12 2.8E-17 132.0 7.7 115 116-245 17-132 (257)
96 PF05401 NodS: Nodulation prot 99.3 7.6E-12 1.7E-16 126.5 10.8 129 133-273 42-171 (201)
97 TIGR00537 hemK_rel_arch HemK-r 99.3 3.6E-11 7.8E-16 122.5 15.2 132 134-286 19-169 (179)
98 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.2E-16 133.2 12.3 107 134-242 99-242 (264)
99 TIGR02469 CbiT precorrin-6Y C5 99.3 4.1E-11 8.9E-16 113.4 13.9 104 133-242 18-122 (124)
100 KOG1271|consensus 99.3 1E-11 2.2E-16 122.2 9.8 130 136-283 69-206 (227)
101 PRK08287 cobalt-precorrin-6Y C 99.3 3.7E-11 7.9E-16 123.3 14.0 124 133-280 30-154 (187)
102 KOG3178|consensus 99.3 3.6E-11 7.9E-16 130.9 14.5 200 81-291 115-323 (342)
103 COG4976 Predicted methyltransf 99.3 2.5E-12 5.4E-17 130.8 4.5 141 135-283 126-266 (287)
104 PF07021 MetW: Methionine bios 99.3 3.1E-11 6.7E-16 121.9 12.3 138 133-282 12-167 (193)
105 PRK06922 hypothetical protein; 99.3 3E-11 6.5E-16 141.8 13.2 110 134-244 418-539 (677)
106 PRK00121 trmB tRNA (guanine-N( 99.3 1.8E-11 3.8E-16 127.4 9.9 130 134-278 40-177 (202)
107 KOG2361|consensus 99.2 3.4E-11 7.3E-16 124.0 11.3 187 84-282 30-237 (264)
108 TIGR02081 metW methionine bios 99.2 5.9E-11 1.3E-15 122.6 13.2 139 133-283 12-168 (194)
109 PF05175 MTS: Methyltransferas 99.2 1.5E-10 3.2E-15 117.2 15.5 107 134-243 31-141 (170)
110 TIGR02367 PylS pyrrolysyl-tRNA 99.2 7.9E-11 1.7E-15 132.1 14.6 100 348-449 239-351 (453)
111 COG2264 PrmA Ribosomal protein 99.2 1.1E-10 2.5E-15 126.1 13.7 146 110-284 144-290 (300)
112 PRK13256 thiopurine S-methyltr 99.2 3E-10 6.4E-15 119.3 14.9 142 133-280 42-197 (226)
113 PRK00517 prmA ribosomal protei 99.2 1.4E-10 2.9E-15 124.8 12.6 121 133-282 118-238 (250)
114 PRK04266 fibrillarin; Provisio 99.2 2.1E-10 4.6E-15 121.1 13.7 140 132-283 70-211 (226)
115 PRK15001 SAM-dependent 23S rib 99.2 2.6E-10 5.6E-15 128.6 14.2 106 135-243 229-341 (378)
116 PF06325 PrmA: Ribosomal prote 99.1 4.4E-10 9.6E-15 122.7 14.2 141 111-283 144-284 (295)
117 PRK00377 cbiT cobalt-precorrin 99.1 5E-10 1.1E-14 116.1 14.0 124 132-276 38-164 (198)
118 cd00645 AsnA Asparagine synthe 99.1 2.3E-09 4.9E-14 113.7 19.0 68 785-854 229-298 (309)
119 TIGR00406 prmA ribosomal prote 99.1 5.1E-10 1.1E-14 122.8 14.6 123 133-280 158-281 (288)
120 PRK00488 pheS phenylalanyl-tRN 99.1 1.1E-09 2.4E-14 120.4 17.1 109 351-466 110-237 (339)
121 PRK13944 protein-L-isoaspartat 99.1 4.5E-10 9.9E-15 117.1 13.1 100 133-242 71-173 (205)
122 PRK09537 pylS pyrolysyl-tRNA s 99.1 1.2E-10 2.7E-15 131.1 9.4 151 309-465 163-333 (417)
123 PLN03075 nicotianamine synthas 99.1 3.5E-10 7.5E-15 122.8 12.4 106 134-242 123-233 (296)
124 PRK14968 putative methyltransf 99.1 6.7E-10 1.5E-14 113.3 13.9 130 133-281 22-172 (188)
125 PF01409 tRNA-synt_2d: tRNA sy 99.1 2.7E-10 5.9E-15 121.5 11.3 114 351-465 19-153 (247)
126 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.1E-10 4.6E-15 118.5 9.9 109 134-242 16-132 (194)
127 PRK13942 protein-L-isoaspartat 99.1 6.9E-10 1.5E-14 116.3 13.4 100 133-242 75-176 (212)
128 TIGR03438 probable methyltrans 99.1 8.6E-10 1.9E-14 121.8 14.4 114 133-246 62-181 (301)
129 PF13659 Methyltransf_26: Meth 99.1 2.8E-10 6.1E-15 107.0 9.0 109 135-243 1-116 (117)
130 TIGR00080 pimt protein-L-isoas 99.1 8.6E-10 1.9E-14 115.8 13.5 100 133-242 76-177 (215)
131 TIGR03534 RF_mod_PrmC protein- 99.1 8.1E-10 1.8E-14 118.2 13.3 129 134-281 87-240 (251)
132 TIGR01177 conserved hypothetic 99.1 1.5E-09 3.3E-14 121.3 15.8 126 133-280 181-313 (329)
133 PRK14967 putative methyltransf 99.1 9.1E-10 2E-14 116.3 13.1 127 133-278 35-180 (223)
134 PRK09489 rsmC 16S ribosomal RN 99.1 1.3E-09 2.7E-14 122.2 14.7 106 134-244 196-305 (342)
135 PRK05425 asparagine synthetase 99.1 1.7E-08 3.7E-13 108.1 22.3 74 779-854 232-308 (327)
136 KOG1541|consensus 99.1 8.4E-10 1.8E-14 112.1 11.7 121 113-243 32-161 (270)
137 PF05724 TPMT: Thiopurine S-me 99.1 4.3E-10 9.2E-15 118.1 9.8 145 133-284 36-192 (218)
138 PRK11088 rrmA 23S rRNA methylt 99.0 1E-09 2.3E-14 119.4 12.2 95 134-244 85-183 (272)
139 PLN02232 ubiquinone biosynthes 99.0 3.2E-10 7E-15 113.6 7.6 118 161-282 1-147 (160)
140 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.4E-09 5.3E-14 120.3 15.3 109 134-242 122-235 (390)
141 PTZ00213 asparagine synthetase 99.0 1E-08 2.2E-13 109.9 18.9 73 780-854 259-334 (348)
142 PF05219 DREV: DREV methyltran 99.0 4.2E-09 9E-14 110.9 15.4 170 99-283 60-241 (265)
143 TIGR03533 L3_gln_methyl protei 99.0 3.9E-09 8.4E-14 115.6 15.8 128 134-281 121-273 (284)
144 PRK04028 glutamyl-tRNA(Gln) am 99.0 1.1E-09 2.3E-14 129.3 10.5 82 622-712 309-397 (630)
145 PTZ00146 fibrillarin; Provisio 99.0 5.1E-09 1.1E-13 113.4 14.6 139 132-282 130-271 (293)
146 COG2242 CobL Precorrin-6B meth 99.0 6.6E-09 1.4E-13 104.6 14.3 131 131-284 31-163 (187)
147 TIGR00536 hemK_fam HemK family 99.0 5.8E-09 1.3E-13 114.3 15.3 104 136-242 116-244 (284)
148 PRK00312 pcm protein-L-isoaspa 99.0 3.6E-09 7.7E-14 110.8 13.0 100 133-243 77-176 (212)
149 PRK07402 precorrin-6B methylas 99.0 4.4E-09 9.5E-14 108.8 13.5 104 133-243 39-143 (196)
150 PRK14966 unknown domain/N5-glu 99.0 4.8E-09 1E-13 118.6 14.6 142 116-280 236-403 (423)
151 cd02440 AdoMet_MTases S-adenos 99.0 4E-09 8.7E-14 94.5 11.3 103 137-241 1-103 (107)
152 PRK09328 N5-glutamine S-adenos 99.0 7.5E-09 1.6E-13 112.5 15.4 129 133-280 107-260 (275)
153 TIGR03704 PrmC_rel_meth putati 99.0 7.5E-09 1.6E-13 111.3 15.1 130 135-283 87-241 (251)
154 PHA03411 putative methyltransf 99.0 4E-09 8.6E-14 113.0 12.4 128 134-278 64-210 (279)
155 PF03291 Pox_MCEL: mRNA cappin 99.0 5.4E-09 1.2E-13 116.3 13.6 113 134-246 62-190 (331)
156 COG4123 Predicted O-methyltran 99.0 2.9E-09 6.2E-14 112.5 10.8 133 133-281 43-193 (248)
157 PRK11188 rrmJ 23S rRNA methylt 99.0 4.9E-09 1.1E-13 109.7 12.5 101 133-244 50-167 (209)
158 PRK11783 rlmL 23S rRNA m(2)G24 99.0 4.7E-09 1E-13 128.3 14.2 146 113-282 524-680 (702)
159 TIGR00669 asnA aspartate--ammo 98.9 6.5E-08 1.4E-12 103.5 20.2 68 785-854 246-315 (330)
160 COG2813 RsmC 16S RNA G1207 met 98.9 9.4E-09 2E-13 110.8 13.8 117 118-243 147-267 (300)
161 PRK15128 23S rRNA m(5)C1962 me 98.9 8.3E-09 1.8E-13 117.7 13.5 126 111-243 204-340 (396)
162 PF06080 DUF938: Protein of un 98.9 1.7E-08 3.7E-13 103.6 14.3 161 115-280 11-190 (204)
163 PLN02853 Probable phenylalanyl 98.9 1.9E-08 4.2E-13 115.1 15.8 30 418-447 344-373 (492)
164 PRK11805 N5-glutamine S-adenos 98.9 1.4E-08 3.1E-13 112.3 14.1 126 136-281 135-285 (307)
165 PF00891 Methyltransf_2: O-met 98.9 1.5E-08 3.2E-13 108.3 13.7 102 133-246 99-203 (241)
166 COG2518 Pcm Protein-L-isoaspar 98.9 1.3E-08 2.7E-13 104.7 12.5 101 132-243 70-170 (209)
167 COG0016 PheS Phenylalanyl-tRNA 98.9 2E-08 4.4E-13 109.9 14.6 114 350-464 112-242 (335)
168 PTZ00326 phenylalanyl-tRNA syn 98.9 1.8E-08 4E-13 115.8 14.2 34 417-450 358-391 (494)
169 PRK00811 spermidine synthase; 98.9 1.4E-08 3E-13 111.2 12.1 109 133-242 75-191 (283)
170 PF01135 PCMT: Protein-L-isoas 98.8 1.2E-08 2.6E-13 106.4 10.4 114 115-243 58-173 (209)
171 PF02938 GAD: GAD domain; Int 98.8 1E-09 2.2E-14 100.2 1.4 81 622-704 14-95 (95)
172 PRK13943 protein-L-isoaspartat 98.8 2.4E-08 5.2E-13 110.7 12.3 100 133-242 79-180 (322)
173 COG2890 HemK Methylase of poly 98.8 5.5E-08 1.2E-12 106.1 14.5 123 137-281 113-262 (280)
174 KOG1975|consensus 98.8 1.1E-08 2.4E-13 109.3 8.5 129 114-245 98-240 (389)
175 PRK10901 16S rRNA methyltransf 98.8 5E-08 1.1E-12 112.9 14.7 111 133-244 243-374 (427)
176 KOG3010|consensus 98.8 1.1E-08 2.3E-13 105.9 8.0 101 137-243 36-138 (261)
177 PRK01544 bifunctional N5-gluta 98.8 3.7E-08 7.9E-13 116.1 13.6 128 134-280 138-291 (506)
178 TIGR00438 rrmJ cell division p 98.8 3.6E-08 7.8E-13 101.3 11.7 99 133-242 31-146 (188)
179 PRK14904 16S rRNA methyltransf 98.8 5.8E-08 1.2E-12 113.0 14.3 110 133-245 249-380 (445)
180 PRK14901 16S rRNA methyltransf 98.8 5.9E-08 1.3E-12 112.6 13.8 113 133-245 251-387 (434)
181 PRK04457 spermidine synthase; 98.8 3.2E-08 6.9E-13 107.1 10.8 109 133-242 65-177 (262)
182 PRK13168 rumA 23S rRNA m(5)U19 98.8 8.7E-08 1.9E-12 111.5 14.8 150 115-288 279-430 (443)
183 TIGR00446 nop2p NOL1/NOP2/sun 98.7 7.4E-08 1.6E-12 104.5 12.9 110 133-244 70-201 (264)
184 PRK14903 16S rRNA methyltransf 98.7 7.6E-08 1.7E-12 111.3 13.4 112 133-245 236-369 (431)
185 TIGR00563 rsmB ribosomal RNA s 98.7 8.8E-08 1.9E-12 110.9 13.8 113 133-245 237-371 (426)
186 cd00768 class_II_aaRS-like_cor 98.7 1.6E-08 3.5E-13 104.8 6.8 114 351-465 2-132 (211)
187 PRK10909 rsmD 16S rRNA m(2)G96 98.7 8.2E-08 1.8E-12 99.5 11.6 107 134-244 53-161 (199)
188 PRK14902 16S rRNA methyltransf 98.7 1.2E-07 2.7E-12 110.3 13.9 111 133-244 249-381 (444)
189 PRK03522 rumB 23S rRNA methylu 98.7 1.5E-07 3.2E-12 104.8 12.9 129 134-287 173-301 (315)
190 PLN02781 Probable caffeoyl-CoA 98.7 1.6E-07 3.5E-12 100.0 12.6 110 133-247 67-183 (234)
191 PLN02366 spermidine synthase 98.7 1.9E-07 4.1E-12 103.1 12.8 124 117-242 76-206 (308)
192 TIGR00417 speE spermidine synt 98.6 1.8E-07 4E-12 101.7 12.3 108 134-242 72-186 (270)
193 smart00650 rADc Ribosomal RNA 98.6 2E-07 4.2E-12 94.2 11.2 103 133-243 12-114 (169)
194 PF12147 Methyltransf_20: Puta 98.6 6.1E-07 1.3E-11 95.8 14.9 150 133-282 134-298 (311)
195 COG2519 GCD14 tRNA(1-methylade 98.6 4E-07 8.8E-12 95.7 12.6 104 132-245 92-198 (256)
196 TIGR02085 meth_trns_rumB 23S r 98.6 4.8E-07 1E-11 103.0 14.1 129 134-287 233-361 (374)
197 PLN02672 methionine S-methyltr 98.6 3E-07 6.5E-12 115.0 13.0 129 135-280 119-301 (1082)
198 PRK01581 speE spermidine synth 98.6 3.1E-07 6.8E-12 102.1 11.6 155 113-281 131-296 (374)
199 PHA03412 putative methyltransf 98.6 2.5E-07 5.5E-12 97.2 10.0 132 134-277 49-197 (241)
200 PF05148 Methyltransf_8: Hypot 98.6 2E-07 4.2E-12 95.4 8.7 131 113-282 55-185 (219)
201 KOG2899|consensus 98.5 3.2E-07 6.9E-12 94.9 9.8 112 134-246 58-213 (288)
202 PF01739 CheR: CheR methyltran 98.5 3.3E-07 7.2E-12 94.7 9.8 107 134-242 31-175 (196)
203 PF02390 Methyltransf_4: Putat 98.5 3.4E-07 7.4E-12 94.7 9.3 106 137-242 20-133 (195)
204 PRK10611 chemotaxis methyltran 98.5 3.6E-07 7.8E-12 99.6 9.9 107 135-242 116-262 (287)
205 PRK03612 spermidine synthase; 98.5 3.2E-07 6.9E-12 108.7 10.0 131 133-275 296-437 (521)
206 COG2263 Predicted RNA methylas 98.5 4E-07 8.6E-12 91.6 8.9 123 133-281 44-167 (198)
207 KOG1499|consensus 98.5 4.1E-07 8.9E-12 99.5 9.7 106 133-241 59-166 (346)
208 KOG2940|consensus 98.5 1.5E-07 3.4E-12 96.0 5.5 156 116-280 57-225 (325)
209 TIGR00479 rumA 23S rRNA (uraci 98.5 6.5E-07 1.4E-11 104.0 11.5 133 133-287 291-425 (431)
210 PF10672 Methyltrans_SAM: S-ad 98.5 6.2E-07 1.3E-11 97.6 10.2 126 111-243 107-239 (286)
211 PLN02476 O-methyltransferase 98.4 1.4E-06 3E-11 94.4 12.3 111 133-248 117-234 (278)
212 COG4122 Predicted O-methyltran 98.4 1.6E-06 3.5E-11 90.5 12.2 123 116-247 45-171 (219)
213 COG1092 Predicted SAM-dependen 98.4 5.5E-07 1.2E-11 101.7 9.3 125 113-244 203-338 (393)
214 PF08704 GCD14: tRNA methyltra 98.4 1.5E-06 3.2E-11 92.8 10.7 141 132-312 38-183 (247)
215 cd04316 ND_PkAspRS_like_N ND_P 98.4 2.2E-07 4.7E-12 86.9 3.3 47 11-57 1-50 (108)
216 PF10294 Methyltransf_16: Puta 98.4 2.5E-06 5.4E-11 86.7 11.2 108 133-243 44-157 (173)
217 PF01596 Methyltransf_3: O-met 98.4 1.7E-06 3.7E-11 90.1 10.1 120 119-247 34-160 (205)
218 TIGR00095 RNA methyltransferas 98.3 2.5E-06 5.3E-11 88.0 10.4 107 134-243 49-160 (189)
219 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 9.3E-07 2E-11 94.6 7.4 148 134-282 56-239 (256)
220 KOG1500|consensus 98.3 2.2E-06 4.8E-11 91.9 9.5 105 134-242 177-282 (517)
221 COG0220 Predicted S-adenosylme 98.3 2E-06 4.3E-11 90.8 9.0 107 136-242 50-164 (227)
222 cd00773 HisRS-like_core Class 98.3 5.3E-06 1.2E-10 89.8 12.2 101 348-450 2-116 (261)
223 KOG3045|consensus 98.3 2.8E-06 6E-11 88.7 9.0 127 115-282 165-291 (325)
224 PRK05031 tRNA (uracil-5-)-meth 98.3 6.4E-06 1.4E-10 93.4 12.8 147 114-287 188-348 (362)
225 PF05185 PRMT5: PRMT5 arginine 98.3 4.3E-06 9.3E-11 96.9 11.4 103 135-240 187-295 (448)
226 TIGR00478 tly hemolysin TlyA f 98.3 4.7E-06 1E-10 88.1 10.5 95 133-242 74-171 (228)
227 TIGR00469 pheS_mito phenylalan 98.2 1.4E-05 3.1E-10 91.1 14.8 67 752-852 270-338 (460)
228 PF02527 GidB: rRNA small subu 98.2 1.1E-05 2.3E-10 82.7 12.1 121 113-242 27-148 (184)
229 COG2521 Predicted archaeal met 98.2 2.4E-06 5.3E-11 88.0 6.9 142 133-282 133-277 (287)
230 PRK14896 ksgA 16S ribosomal RN 98.2 1.3E-05 2.7E-10 86.8 12.9 95 108-214 8-102 (258)
231 PRK00274 ksgA 16S ribosomal RN 98.2 5.3E-06 1.1E-10 90.4 9.8 89 113-212 26-114 (272)
232 PRK11727 23S rRNA mA1618 methy 98.2 7.3E-06 1.6E-10 90.8 10.3 83 134-216 114-202 (321)
233 PLN02589 caffeoyl-CoA O-methyl 98.2 9.4E-06 2E-10 86.9 10.8 123 117-248 66-196 (247)
234 TIGR02143 trmA_only tRNA (urac 98.2 1.7E-05 3.7E-10 89.6 13.5 127 136-287 199-339 (353)
235 COG1352 CheR Methylase of chem 98.2 1.4E-05 3.1E-10 86.2 12.2 107 134-242 96-241 (268)
236 KOG2904|consensus 98.2 2.6E-05 5.5E-10 82.4 13.3 107 134-243 148-286 (328)
237 COG1041 Predicted DNA modifica 98.2 1.3E-05 2.8E-10 88.3 11.7 109 132-243 195-311 (347)
238 PF00587 tRNA-synt_2b: tRNA sy 98.1 5.1E-06 1.1E-10 84.2 7.9 113 350-465 1-134 (173)
239 cd00779 ProRS_core_prok Prolyl 98.1 7.7E-06 1.7E-10 88.3 9.2 127 346-474 29-177 (255)
240 PF03602 Cons_hypoth95: Conser 98.1 4.9E-06 1.1E-10 85.2 7.0 126 115-245 26-156 (183)
241 PF03141 Methyltransf_29: Puta 98.1 2.3E-06 5.1E-11 97.5 4.9 121 117-245 100-222 (506)
242 PTZ00338 dimethyladenosine tra 98.1 1.3E-05 2.8E-10 88.2 10.3 91 113-213 20-111 (294)
243 PRK04148 hypothetical protein; 98.1 2E-05 4.4E-10 76.0 10.3 97 134-246 16-113 (134)
244 cd04317 EcAspRS_like_N EcAspRS 98.1 1.7E-06 3.7E-11 84.2 2.9 47 9-55 1-50 (135)
245 PRK04338 N(2),N(2)-dimethylgua 98.1 1.8E-05 4E-10 90.1 11.1 100 135-242 58-158 (382)
246 COG0124 HisS Histidyl-tRNA syn 98.1 1.1E-05 2.3E-10 92.4 9.3 120 345-465 15-154 (429)
247 PLN02823 spermine synthase 98.1 2.4E-05 5.3E-10 87.4 11.9 105 134-242 103-220 (336)
248 TIGR00755 ksgA dimethyladenosi 98.1 3E-05 6.6E-10 83.6 11.9 91 113-216 13-106 (253)
249 cd00496 PheRS_alpha_core Pheny 98.0 3.4E-05 7.4E-10 81.3 11.9 109 353-465 5-131 (218)
250 cd00772 ProRS_core Prolyl-tRNA 98.0 2.4E-05 5.2E-10 84.9 10.6 129 347-476 31-186 (264)
251 TIGR00442 hisS histidyl-tRNA s 98.0 2.9E-05 6.2E-10 89.3 11.6 105 344-450 10-131 (397)
252 COG3963 Phospholipid N-methylt 98.0 4E-05 8.6E-10 75.5 10.7 107 133-244 47-158 (194)
253 cd00670 Gly_His_Pro_Ser_Thr_tR 98.0 2.2E-05 4.8E-10 83.3 9.9 102 348-450 2-125 (235)
254 PRK00037 hisS histidyl-tRNA sy 98.0 3.1E-05 6.8E-10 89.4 11.9 116 344-461 14-147 (412)
255 PF11968 DUF3321: Putative met 98.0 3.6E-05 7.7E-10 79.6 10.8 125 135-284 52-183 (219)
256 PF07942 N2227: N2227-like pro 98.0 8.8E-05 1.9E-09 80.0 14.2 148 133-283 55-243 (270)
257 PRK09194 prolyl-tRNA synthetas 98.0 3.8E-05 8.2E-10 92.2 11.8 129 345-475 44-194 (565)
258 PRK11933 yebU rRNA (cytosine-C 98.0 5.6E-05 1.2E-09 88.1 12.8 112 133-245 112-245 (470)
259 TIGR00409 proS_fam_II prolyl-t 98.0 3.3E-05 7.3E-10 92.2 10.9 128 345-474 44-193 (568)
260 PF01170 UPF0020: Putative RNA 97.9 4.7E-05 1E-09 77.8 10.5 100 133-234 27-143 (179)
261 CHL00201 syh histidine-tRNA sy 97.9 5.1E-05 1.1E-09 88.2 11.8 117 344-462 14-152 (430)
262 cd00778 ProRS_core_arch_euk Pr 97.9 1.6E-05 3.5E-10 86.1 7.0 128 346-474 30-184 (261)
263 cd00774 GlyRS-like_core Glycyl 97.9 2.4E-05 5.1E-10 84.5 8.0 98 346-449 30-143 (254)
264 TIGR03439 methyl_EasF probable 97.9 8.3E-05 1.8E-09 82.5 12.4 110 133-242 75-197 (319)
265 PF09243 Rsm22: Mitochondrial 97.9 9.8E-05 2.1E-09 80.6 12.2 147 117-280 17-166 (274)
266 KOG1331|consensus 97.9 1.4E-05 3E-10 85.3 5.3 115 114-246 32-147 (293)
267 KOG3420|consensus 97.9 1.4E-05 3.1E-10 76.6 4.8 78 134-214 48-125 (185)
268 COG0421 SpeE Spermidine syntha 97.9 6.4E-05 1.4E-09 81.9 10.4 106 136-242 78-190 (282)
269 KOG3987|consensus 97.9 6.3E-06 1.4E-10 83.3 2.2 165 99-280 80-258 (288)
270 PRK01544 bifunctional N5-gluta 97.9 4.2E-05 9.2E-10 90.4 9.6 109 134-242 347-462 (506)
271 cd00771 ThrRS_core Threonyl-tR 97.9 7.9E-05 1.7E-09 82.4 11.0 102 345-449 27-148 (298)
272 TIGR00308 TRM1 tRNA(guanine-26 97.8 5E-05 1.1E-09 86.2 9.1 101 135-242 45-147 (374)
273 COG0357 GidB Predicted S-adeno 97.8 0.00011 2.3E-09 76.9 10.7 121 112-242 45-168 (215)
274 COG0500 SmtA SAM-dependent met 97.8 0.00028 6E-09 66.5 12.5 103 138-246 52-159 (257)
275 TIGR00443 hisZ_biosyn_reg ATP 97.8 8.7E-05 1.9E-09 82.6 10.2 119 345-465 5-140 (314)
276 COG0742 N6-adenine-specific me 97.8 0.00011 2.3E-09 74.8 9.7 111 134-244 43-156 (187)
277 PRK12292 hisZ ATP phosphoribos 97.8 0.00011 2.3E-09 84.5 10.9 120 345-465 14-151 (391)
278 PRK04172 pheS phenylalanyl-tRN 97.8 0.00012 2.5E-09 86.4 11.5 120 345-465 229-401 (489)
279 KOG1661|consensus 97.8 0.00013 2.9E-09 74.5 10.1 100 133-242 81-193 (237)
280 KOG1269|consensus 97.8 4.4E-05 9.6E-10 85.9 7.4 109 133-245 109-218 (364)
281 PF04672 Methyltransf_19: S-ad 97.7 0.00012 2.6E-09 78.5 9.6 161 115-278 49-232 (267)
282 PLN02972 Histidyl-tRNA synthet 97.7 0.00015 3.3E-09 87.8 11.7 121 342-465 335-471 (763)
283 PRK12421 ATP phosphoribosyltra 97.7 0.00019 4.1E-09 82.3 12.0 121 344-465 17-154 (392)
284 PF02475 Met_10: Met-10+ like- 97.7 0.0001 2.2E-09 76.5 8.7 98 133-239 100-199 (200)
285 PF01564 Spermine_synth: Sperm 97.7 0.00011 2.3E-09 79.0 9.0 110 133-242 75-191 (246)
286 PF13393 tRNA-synt_His: Histid 97.7 0.00016 3.5E-09 80.3 10.3 117 345-463 7-139 (311)
287 PLN02530 histidine-tRNA ligase 97.7 0.00021 4.6E-09 84.3 11.5 119 344-464 80-216 (487)
288 PLN02788 phenylalanine-tRNA sy 97.6 0.00021 4.7E-09 81.0 10.4 112 353-467 72-212 (402)
289 PRK12420 histidyl-tRNA synthet 97.6 0.00022 4.7E-09 82.8 10.8 120 344-465 14-152 (423)
290 TIGR00414 serS seryl-tRNA synt 97.6 0.00023 5E-09 82.2 10.8 126 345-476 170-321 (418)
291 COG2265 TrmA SAM-dependent met 97.6 0.00022 4.9E-09 82.3 10.5 133 133-287 292-425 (432)
292 TIGR00468 pheS phenylalanyl-tR 97.6 0.00017 3.7E-09 79.5 8.9 112 351-465 74-201 (294)
293 PRK12293 hisZ ATP phosphoribos 97.6 0.0004 8.7E-09 76.0 11.2 111 345-463 16-137 (281)
294 PRK00536 speE spermidine synth 97.6 0.00057 1.2E-08 73.7 12.1 110 118-242 58-171 (262)
295 PRK00413 thrS threonyl-tRNA sy 97.6 0.00025 5.4E-09 86.6 10.0 104 344-449 266-389 (638)
296 PRK14799 thrS threonyl-tRNA sy 97.5 0.00023 5.1E-09 84.4 9.1 116 345-464 165-300 (545)
297 COG2520 Predicted methyltransf 97.5 0.00059 1.3E-08 75.9 11.4 107 133-247 187-294 (341)
298 TIGR00418 thrS threonyl-tRNA s 97.5 0.00056 1.2E-08 82.3 11.8 110 345-457 197-326 (563)
299 PRK05431 seryl-tRNA synthetase 97.5 0.0004 8.6E-09 80.4 10.0 126 345-475 167-318 (425)
300 PF05958 tRNA_U5-meth_tr: tRNA 97.5 0.00096 2.1E-08 75.5 12.7 147 114-287 178-338 (352)
301 KOG2352|consensus 97.5 0.00069 1.5E-08 77.5 11.3 105 136-243 50-162 (482)
302 PF01728 FtsJ: FtsJ-like methy 97.5 0.0002 4.4E-09 73.0 6.4 100 134-244 23-141 (181)
303 PRK12325 prolyl-tRNA synthetas 97.5 0.00052 1.1E-08 80.0 10.6 116 346-463 45-179 (439)
304 PRK12305 thrS threonyl-tRNA sy 97.4 0.00048 1E-08 83.1 10.3 115 345-462 203-337 (575)
305 KOG3191|consensus 97.4 0.0011 2.4E-08 66.5 10.8 126 135-279 44-190 (209)
306 PRK12444 threonyl-tRNA synthet 97.4 0.00044 9.5E-09 84.4 9.8 124 346-473 272-418 (639)
307 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.00064 1.4E-08 75.5 10.1 124 116-243 32-184 (311)
308 TIGR00134 gatE_arch glutamyl-t 97.4 0.00057 1.2E-08 81.6 10.0 79 622-709 302-387 (620)
309 TIGR00408 proS_fam_I prolyl-tR 97.4 0.00044 9.5E-09 81.2 8.9 128 348-476 38-192 (472)
310 PF04816 DUF633: Family of unk 97.4 0.0009 2E-08 69.8 10.2 122 138-282 1-124 (205)
311 PLN02908 threonyl-tRNA synthet 97.4 0.00052 1.1E-08 84.2 9.8 118 344-465 317-454 (686)
312 PRK08661 prolyl-tRNA synthetas 97.4 0.00042 9.2E-09 81.5 8.6 129 345-475 41-196 (477)
313 cd04317 EcAspRS_like_N EcAspRS 97.3 0.00018 3.9E-09 70.0 4.2 47 296-343 88-134 (135)
314 PRK00050 16S rRNA m(4)C1402 me 97.3 0.00039 8.4E-09 76.3 7.2 76 133-210 18-97 (296)
315 COG0030 KsgA Dimethyladenosine 97.3 0.001 2.2E-08 71.4 10.1 96 113-218 14-109 (259)
316 cd00770 SerRS_core Seryl-tRNA 97.3 0.00069 1.5E-08 74.9 9.2 114 345-464 49-185 (297)
317 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.0024 5.2E-08 78.8 14.5 110 133-242 189-347 (702)
318 COG0144 Sun tRNA and rRNA cyto 97.3 0.0022 4.9E-08 72.6 13.1 116 131-246 153-292 (355)
319 KOG0820|consensus 97.3 0.0011 2.4E-08 70.3 9.4 79 131-214 55-134 (315)
320 PF13679 Methyltransf_32: Meth 97.3 0.003 6.4E-08 62.0 11.8 117 118-244 9-133 (141)
321 PRK12295 hisZ ATP phosphoribos 97.2 0.0015 3.2E-08 74.5 10.7 109 352-465 8-133 (373)
322 COG1189 Predicted rRNA methyla 97.2 0.0014 3E-08 68.8 9.2 139 133-282 78-224 (245)
323 PLN02837 threonine-tRNA ligase 97.2 0.0011 2.3E-08 80.4 9.7 125 345-473 244-392 (614)
324 KOG1663|consensus 97.2 0.0043 9.2E-08 64.8 12.3 120 119-247 62-188 (237)
325 KOG3201|consensus 97.2 0.00044 9.5E-09 67.8 4.6 135 133-283 28-167 (201)
326 TIGR02987 met_A_Alw26 type II 97.2 0.0016 3.5E-08 77.7 10.6 81 134-214 31-123 (524)
327 COG3897 Predicted methyltransf 97.2 0.0018 4E-08 65.7 9.0 104 133-244 78-181 (218)
328 PF08123 DOT1: Histone methyla 97.1 0.0011 2.3E-08 69.2 7.6 120 114-241 27-157 (205)
329 COG4076 Predicted RNA methylas 97.1 0.00065 1.4E-08 68.1 5.5 102 135-241 33-134 (252)
330 PRK03991 threonyl-tRNA synthet 97.1 0.0018 4E-08 78.0 10.0 128 345-475 224-375 (613)
331 PF09445 Methyltransf_15: RNA 97.1 0.0005 1.1E-08 68.8 4.3 74 137-211 2-77 (163)
332 PLN02320 seryl-tRNA synthetase 97.1 0.00084 1.8E-08 78.2 6.5 130 347-478 232-384 (502)
333 KOG1709|consensus 97.1 0.0021 4.5E-08 66.0 8.5 107 133-242 100-206 (271)
334 PRK11760 putative 23S rRNA C24 97.1 0.0023 5.1E-08 70.8 9.6 87 133-235 210-296 (357)
335 PLN02678 seryl-tRNA synthetase 97.1 0.0011 2.4E-08 76.7 7.5 128 346-477 172-327 (448)
336 cd04323 AsnRS_cyto_like_N AsnR 97.0 0.00041 9E-09 61.7 2.9 34 24-57 1-37 (84)
337 KOG2798|consensus 97.0 0.0046 9.9E-08 66.9 10.5 158 121-281 137-336 (369)
338 cd04319 PhAsnRS_like_N PhAsnRS 96.9 0.0005 1.1E-08 63.7 2.7 33 24-56 1-36 (103)
339 KOG2187|consensus 96.9 0.0033 7.2E-08 72.3 9.7 79 118-197 367-445 (534)
340 COG0116 Predicted N6-adenine-s 96.9 0.0064 1.4E-07 68.4 11.8 108 133-242 190-344 (381)
341 cd04321 ScAspRS_mt_like_N ScAs 96.9 0.00061 1.3E-08 61.0 2.8 33 24-56 1-38 (86)
342 cd04320 AspRS_cyto_N AspRS_cyt 96.9 0.0006 1.3E-08 63.0 2.8 33 24-56 1-37 (102)
343 COG0293 FtsJ 23S rRNA methylas 96.9 0.0046 9.9E-08 64.0 9.3 104 131-245 42-162 (205)
344 PLN02850 aspartate-tRNA ligase 96.8 0.00076 1.6E-08 79.9 3.5 47 10-56 69-118 (530)
345 cd04318 EcAsnRS_like_N EcAsnRS 96.8 0.00089 1.9E-08 59.3 2.8 34 24-57 1-39 (82)
346 PRK03932 asnC asparaginyl-tRNA 96.8 0.00089 1.9E-08 78.1 3.6 47 10-56 3-53 (450)
347 TIGR01444 fkbM_fam methyltrans 96.7 0.0036 7.8E-08 60.9 7.1 58 137-194 1-59 (143)
348 cd04100 Asp_Lys_Asn_RS_N Asp_L 96.7 0.00078 1.7E-08 60.0 2.1 34 24-57 1-37 (85)
349 PLN02221 asparaginyl-tRNA synt 96.7 0.00091 2E-08 79.5 3.2 38 18-55 46-90 (572)
350 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.7 0.0049 1.1E-07 67.6 8.7 113 133-245 84-222 (283)
351 cd04322 LysRS_N LysRS_N: N-ter 96.7 0.0011 2.3E-08 62.0 2.8 34 24-57 1-37 (108)
352 KOG2784|consensus 96.7 0.002 4.4E-08 70.3 5.0 53 413-465 328-384 (483)
353 PF00398 RrnaAD: Ribosomal RNA 96.6 0.019 4.2E-07 62.3 12.5 114 108-234 9-123 (262)
354 KOG2915|consensus 96.6 0.02 4.3E-07 61.1 11.3 124 133-278 104-231 (314)
355 PLN02603 asparaginyl-tRNA synt 96.6 0.0017 3.8E-08 77.1 3.9 47 9-55 88-145 (565)
356 PRK12294 hisZ ATP phosphoribos 96.6 0.014 3.1E-07 63.5 10.7 103 345-455 4-116 (272)
357 KOG0555|consensus 96.5 0.00095 2.1E-08 73.4 1.2 37 19-55 120-159 (545)
358 COG2384 Predicted SAM-dependen 96.4 0.04 8.6E-07 57.4 12.0 126 134-282 16-143 (226)
359 PF01269 Fibrillarin: Fibrilla 96.4 0.034 7.3E-07 58.2 11.6 108 131-244 70-180 (229)
360 COG4262 Predicted spermidine s 96.4 0.015 3.2E-07 64.1 9.3 107 133-243 288-408 (508)
361 COG4798 Predicted methyltransf 96.4 0.027 5.8E-07 57.3 10.4 148 132-287 46-210 (238)
362 TIGR00457 asnS asparaginyl-tRN 96.3 0.0022 4.9E-08 74.8 2.8 38 19-56 13-55 (453)
363 PRK12445 lysyl-tRNA synthetase 96.3 0.0019 4.1E-08 76.2 2.1 49 9-57 42-103 (505)
364 KOG1936|consensus 96.3 0.015 3.2E-07 65.3 8.7 115 347-465 73-206 (518)
365 COG4627 Uncharacterized protei 96.2 0.0015 3.2E-08 63.9 0.7 80 201-280 45-136 (185)
366 PTZ00425 asparagine-tRNA ligas 96.2 0.0033 7.2E-08 74.7 3.8 38 18-55 77-121 (586)
367 PTZ00401 aspartyl-tRNA synthet 96.2 0.0035 7.7E-08 74.4 3.6 45 11-55 66-114 (550)
368 TIGR00389 glyS_dimeric glycyl- 96.1 0.011 2.5E-07 69.9 7.3 31 348-378 37-67 (551)
369 KOG1122|consensus 96.0 0.033 7.2E-07 62.7 10.1 110 131-244 238-373 (460)
370 TIGR00415 serS_MJ seryl-tRNA s 96.0 0.067 1.5E-06 62.4 12.7 130 346-476 221-401 (520)
371 TIGR00499 lysS_bact lysyl-tRNA 96.0 0.0032 7E-08 74.2 2.0 49 9-57 30-91 (496)
372 COG0442 ProS Prolyl-tRNA synth 95.9 0.026 5.6E-07 66.1 9.1 115 347-463 46-179 (500)
373 KOG3115|consensus 95.9 0.021 4.7E-07 58.3 7.0 104 135-242 61-183 (249)
374 PF03059 NAS: Nicotianamine sy 95.7 0.061 1.3E-06 58.5 10.2 105 135-242 121-230 (276)
375 COG2502 AsnA Asparagine synthe 95.7 1 2.2E-05 47.6 18.3 116 354-469 15-144 (330)
376 PF13578 Methyltransf_24: Meth 95.6 0.0044 9.6E-08 57.3 1.1 100 139-242 1-105 (106)
377 PTZ00385 lysyl-tRNA synthetase 95.6 0.0051 1.1E-07 73.9 1.7 49 9-57 85-145 (659)
378 KOG2324|consensus 95.6 0.055 1.2E-06 59.5 9.3 128 347-476 51-201 (457)
379 PRK04173 glycyl-tRNA synthetas 95.5 0.021 4.6E-07 66.8 6.4 50 415-465 184-237 (456)
380 cd04322 LysRS_N LysRS_N: N-ter 95.4 0.013 2.8E-07 54.7 3.3 41 297-339 68-108 (108)
381 KOG2730|consensus 95.3 0.017 3.7E-07 59.7 3.9 77 134-211 94-173 (263)
382 PRK10742 putative methyltransf 95.2 0.043 9.3E-07 58.6 7.0 78 137-216 91-177 (250)
383 TIGR00470 sepS O-phosphoseryl- 95.2 0.024 5.1E-07 65.0 5.3 48 418-465 209-259 (533)
384 PF07091 FmrO: Ribosomal RNA m 95.2 0.092 2E-06 56.0 9.2 146 118-277 92-239 (251)
385 COG5459 Predicted rRNA methyla 95.1 0.065 1.4E-06 59.0 8.0 106 135-243 114-226 (484)
386 COG1889 NOP1 Fibrillarin-like 95.0 0.26 5.7E-06 50.7 11.3 141 131-283 73-215 (231)
387 PRK00960 seryl-tRNA synthetase 94.7 0.047 1E-06 64.4 6.1 120 345-465 220-387 (517)
388 COG0423 GRS1 Glycyl-tRNA synth 94.7 0.071 1.5E-06 61.7 7.2 30 349-378 41-71 (558)
389 PLN02788 phenylalanine-tRNA sy 94.6 0.049 1.1E-06 62.2 5.7 55 777-851 230-286 (402)
390 PLN02668 indole-3-acetate carb 94.5 0.27 5.9E-06 56.0 11.4 46 201-246 160-241 (386)
391 PF03492 Methyltransf_7: SAM d 94.4 0.26 5.6E-06 55.5 11.0 112 133-247 15-188 (334)
392 COG0172 SerS Seryl-tRNA synthe 94.4 0.13 2.9E-06 59.0 8.6 133 346-480 172-326 (429)
393 KOG4589|consensus 94.3 0.2 4.3E-06 50.9 8.5 104 132-246 67-188 (232)
394 COG3705 HisZ ATP phosphoribosy 94.2 0.12 2.5E-06 58.9 7.6 118 345-465 14-148 (390)
395 PF05971 Methyltransf_10: Prot 94.2 0.15 3.2E-06 56.1 8.2 84 135-218 103-192 (299)
396 PHA01634 hypothetical protein 94.2 0.22 4.7E-06 47.5 8.0 47 134-180 28-74 (156)
397 PF01795 Methyltransf_5: MraW 94.2 0.078 1.7E-06 58.6 6.0 76 133-209 19-99 (310)
398 PF01861 DUF43: Protein of unk 94.0 0.6 1.3E-05 49.7 11.8 103 134-241 44-148 (243)
399 TIGR00468 pheS phenylalanyl-tR 94.0 0.067 1.5E-06 59.1 5.1 57 777-852 221-281 (294)
400 PF06962 rRNA_methylase: Putat 93.9 0.23 5.1E-06 48.5 7.9 85 159-245 1-95 (140)
401 COG0275 Predicted S-adenosylme 93.8 0.49 1.1E-05 51.7 11.0 62 133-195 22-85 (314)
402 KOG1501|consensus 93.8 0.093 2E-06 59.2 5.7 97 136-233 68-165 (636)
403 PRK14894 glycyl-tRNA synthetas 93.8 0.31 6.7E-06 56.8 10.1 101 349-450 41-201 (539)
404 COG1867 TRM1 N2,N2-dimethylgua 93.2 0.28 6.1E-06 54.9 8.1 104 135-245 53-157 (380)
405 PRK09537 pylS pyrolysyl-tRNA s 93.2 0.09 1.9E-06 60.3 4.3 55 777-852 349-403 (417)
406 PF07757 AdoMet_MTase: Predict 93.0 0.28 6.1E-06 45.5 6.5 47 118-165 42-88 (112)
407 PF06859 Bin3: Bicoid-interact 92.8 0.087 1.9E-06 49.1 3.0 43 203-245 1-47 (110)
408 PTZ00417 lysine-tRNA ligase; P 92.8 0.051 1.1E-06 65.2 1.9 50 8-57 109-171 (585)
409 KOG2920|consensus 92.8 0.086 1.9E-06 57.0 3.3 107 133-242 115-234 (282)
410 KOG2793|consensus 92.7 0.57 1.2E-05 50.2 9.3 105 135-243 87-200 (248)
411 COG1064 AdhP Zn-dependent alco 92.5 0.63 1.4E-05 52.1 9.8 97 132-244 164-261 (339)
412 PF02005 TRM: N2,N2-dimethylgu 92.5 0.27 5.9E-06 56.2 7.1 102 134-242 49-154 (377)
413 TIGR00006 S-adenosyl-methyltra 92.5 0.35 7.5E-06 53.6 7.7 47 133-179 19-66 (305)
414 cd00315 Cyt_C5_DNA_methylase C 92.4 0.3 6.4E-06 53.5 7.0 74 137-216 2-75 (275)
415 KOG2198|consensus 92.4 0.81 1.7E-05 51.3 10.3 118 129-246 150-300 (375)
416 PF03141 Methyltransf_29: Puta 92.3 0.15 3.3E-06 59.1 4.7 98 136-243 367-468 (506)
417 cd00768 class_II_aaRS-like_cor 92.1 0.064 1.4E-06 55.3 1.3 52 777-839 155-211 (211)
418 PF03269 DUF268: Caenorhabditi 92.1 0.41 8.9E-06 47.6 6.7 136 135-284 2-147 (177)
419 PRK09616 pheT phenylalanyl-tRN 91.8 0.64 1.4E-05 56.0 9.5 113 352-465 362-489 (552)
420 TIGR00027 mthyl_TIGR00027 meth 91.2 1.4 3E-05 47.9 10.5 144 135-280 82-248 (260)
421 COG0441 ThrS Threonyl-tRNA syn 91.0 0.62 1.3E-05 55.9 8.0 115 348-466 220-354 (589)
422 PF04445 SAM_MT: Putative SAM- 90.5 0.62 1.3E-05 49.5 6.7 79 136-216 77-164 (234)
423 PRK04172 pheS phenylalanyl-tRN 90.4 0.36 7.9E-06 57.2 5.5 57 777-854 420-479 (489)
424 cd04319 PhAsnRS_like_N PhAsnRS 89.9 0.32 6.9E-06 45.0 3.6 36 297-337 68-103 (103)
425 PF04989 CmcI: Cephalosporin h 89.8 0.71 1.5E-05 48.2 6.3 118 115-245 21-150 (206)
426 COG0286 HsdM Type I restrictio 89.7 2.8 6E-05 49.8 12.1 126 114-243 170-327 (489)
427 KOG4058|consensus 89.3 1.6 3.5E-05 42.8 7.8 101 133-242 71-172 (199)
428 COG0270 Dcm Site-specific DNA 89.1 1.6 3.6E-05 49.0 9.2 127 135-276 3-141 (328)
429 KOG1562|consensus 88.6 1 2.3E-05 49.0 6.7 110 133-242 120-236 (337)
430 PF10354 DUF2431: Domain of un 87.4 4.8 0.0001 40.7 10.4 127 141-282 3-152 (166)
431 PLN02734 glycyl-tRNA synthetas 86.6 0.39 8.5E-06 58.3 2.3 88 395-483 246-352 (684)
432 KOG2539|consensus 86.3 2.3 5E-05 49.1 8.1 109 134-243 200-316 (491)
433 PF01336 tRNA_anti-codon: OB-f 85.7 0.59 1.3E-05 39.7 2.4 31 25-55 1-35 (75)
434 PRK11524 putative methyltransf 85.5 2.4 5.2E-05 46.6 7.7 58 119-179 195-252 (284)
435 cd08283 FDH_like_1 Glutathione 85.0 2 4.3E-05 49.2 7.1 107 133-242 183-306 (386)
436 PRK01747 mnmC bifunctional tRN 84.6 2.7 6E-05 51.8 8.5 127 134-280 57-225 (662)
437 PF01555 N6_N4_Mtase: DNA meth 84.3 1.8 3.9E-05 45.0 5.8 42 133-175 190-231 (231)
438 KOG2651|consensus 84.3 2.4 5.1E-05 47.7 6.7 43 133-176 152-195 (476)
439 COG4301 Uncharacterized conser 84.2 8.4 0.00018 41.2 10.3 110 133-242 77-193 (321)
440 cd00769 PheRS_beta_core Phenyl 84.0 2 4.2E-05 44.6 5.8 109 352-465 3-137 (198)
441 KOG1035|consensus 83.9 3.9 8.5E-05 52.3 9.1 134 344-484 928-1073(1351)
442 KOG1596|consensus 83.6 3.9 8.5E-05 43.3 7.6 107 131-243 153-262 (317)
443 TIGR00470 sepS O-phosphoseryl- 83.3 0.57 1.2E-05 54.1 1.6 46 786-852 295-340 (533)
444 KOG1099|consensus 83.2 1.3 2.9E-05 46.4 4.1 98 135-243 42-164 (294)
445 KOG0822|consensus 82.9 2.6 5.7E-05 49.2 6.6 105 135-242 368-478 (649)
446 PF02636 Methyltransf_28: Puta 82.5 3.7 8.1E-05 44.2 7.5 77 135-217 19-109 (252)
447 PRK13699 putative methylase; P 82.4 4.2 9.1E-05 43.3 7.6 47 133-180 162-208 (227)
448 PF00145 DNA_methylase: C-5 cy 81.8 2.6 5.7E-05 46.5 6.2 126 137-278 2-138 (335)
449 PRK09424 pntA NAD(P) transhydr 81.6 7.5 0.00016 46.3 10.1 101 133-242 163-285 (509)
450 KOG2783|consensus 81.4 0.8 1.7E-05 51.2 1.8 102 346-449 73-184 (436)
451 COG3129 Predicted SAM-dependen 81.4 4.5 9.8E-05 42.7 7.1 82 133-216 77-166 (292)
452 COG1568 Predicted methyltransf 79.8 7.8 0.00017 42.0 8.4 105 134-242 152-260 (354)
453 KOG1227|consensus 78.5 1.6 3.5E-05 47.6 2.9 103 133-244 193-299 (351)
454 KOG2509|consensus 77.8 6.7 0.00015 44.9 7.6 130 345-478 182-337 (455)
455 PF11599 AviRa: RRNA methyltra 76.7 7.8 0.00017 40.6 7.1 65 112-177 30-97 (246)
456 PRK09348 glyQ glycyl-tRNA synt 76.4 2.1 4.5E-05 45.5 2.9 56 776-855 127-183 (283)
457 KOG2671|consensus 76.2 5.7 0.00012 44.3 6.3 112 133-246 207-358 (421)
458 cd08254 hydroxyacyl_CoA_DH 6-h 76.2 6.7 0.00014 43.3 7.2 95 133-242 164-263 (338)
459 KOG1253|consensus 76.1 1.8 4E-05 50.2 2.6 105 133-243 108-217 (525)
460 cd00733 GlyRS_alpha_core Class 75.9 2.1 4.5E-05 45.4 2.8 55 776-854 123-178 (279)
461 COG1565 Uncharacterized conser 75.3 8.9 0.00019 43.3 7.6 48 133-180 76-132 (370)
462 TIGR00675 dcm DNA-methyltransf 74.8 6.8 0.00015 43.8 6.8 125 138-278 1-136 (315)
463 COG3510 CmcI Cephalosporin hyd 74.8 15 0.00033 37.8 8.4 108 134-248 69-186 (237)
464 KOG0024|consensus 73.9 8.9 0.00019 42.6 7.0 103 131-245 166-276 (354)
465 PRK13699 putative methylase; P 73.7 4.5 9.7E-05 43.0 4.7 76 187-278 4-92 (227)
466 PF05711 TylF: Macrocin-O-meth 72.8 15 0.00034 39.5 8.5 108 133-244 73-214 (248)
467 cd05188 MDR Medium chain reduc 71.5 13 0.00028 39.2 7.8 97 133-243 133-233 (271)
468 PRK09880 L-idonate 5-dehydroge 71.4 14 0.00029 41.5 8.2 96 134-242 169-266 (343)
469 KOG2298|consensus 70.9 2.2 4.8E-05 49.0 1.7 105 395-500 180-324 (599)
470 PF02254 TrkA_N: TrkA-N domain 70.9 9.9 0.00021 35.2 5.9 88 143-242 4-96 (116)
471 PF11899 DUF3419: Protein of u 70.4 7.1 0.00015 44.8 5.7 63 182-244 274-336 (380)
472 TIGR00388 glyQ glycyl-tRNA syn 69.5 3.4 7.4E-05 44.1 2.6 56 776-855 124-180 (293)
473 PRK11524 putative methyltransf 68.9 4.6 9.9E-05 44.4 3.6 57 186-242 10-80 (284)
474 TIGR00471 pheT_arch phenylalan 65.6 21 0.00046 43.1 8.6 114 351-465 364-491 (551)
475 COG2933 Predicted SAM-dependen 65.5 19 0.0004 38.9 7.0 87 133-235 210-296 (358)
476 cd08230 glucose_DH Glucose deh 65.0 32 0.00069 38.7 9.6 96 133-243 171-270 (355)
477 PF00107 ADH_zinc_N: Zinc-bind 64.8 18 0.00039 34.0 6.4 88 144-245 1-92 (130)
478 PF05206 TRM13: Methyltransfer 64.0 44 0.00095 36.4 9.9 76 121-198 6-88 (259)
479 PF11312 DUF3115: Protein of u 64.0 11 0.00023 41.9 5.2 111 135-245 87-245 (315)
480 TIGR02822 adh_fam_2 zinc-bindi 64.0 49 0.0011 36.9 10.8 92 132-243 163-255 (329)
481 TIGR00561 pntA NAD(P) transhyd 63.5 17 0.00037 43.3 7.1 98 134-240 163-282 (511)
482 COG2024 Phenylalanyl-tRNA synt 63.2 4.5 9.8E-05 45.2 2.1 34 823-857 318-352 (536)
483 KOG0556|consensus 63.1 6.1 0.00013 44.7 3.1 47 11-57 71-120 (533)
484 PRK07080 hypothetical protein; 62.8 6.3 0.00014 43.6 3.1 47 418-465 153-201 (317)
485 KOG0554|consensus 62.1 4.5 9.8E-05 45.7 1.9 42 15-56 13-59 (446)
486 COG0752 GlyQ Glycyl-tRNA synth 61.8 32 0.00069 36.6 7.8 55 776-854 128-183 (298)
487 cd08237 ribitol-5-phosphate_DH 61.7 33 0.00071 38.5 8.8 92 133-242 162-256 (341)
488 cd08232 idonate-5-DH L-idonate 59.6 34 0.00073 37.9 8.4 93 134-242 165-262 (339)
489 PTZ00357 methyltransferase; Pr 59.4 31 0.00066 42.0 8.0 102 136-238 702-831 (1072)
490 cd08245 CAD Cinnamyl alcohol d 58.4 64 0.0014 35.5 10.4 95 133-242 161-256 (330)
491 COG3315 O-Methyltransferase in 56.3 50 0.0011 36.7 8.8 145 135-281 93-263 (297)
492 COG1190 LysU Lysyl-tRNA synthe 56.3 5 0.00011 46.9 1.0 50 8-57 37-99 (502)
493 PF03590 AsnA: Aspartate-ammon 56.0 80 0.0017 33.7 9.7 104 364-468 23-141 (244)
494 COG1255 Uncharacterized protei 55.6 1.1E+02 0.0025 29.0 9.5 92 134-245 13-105 (129)
495 TIGR00497 hsdM type I restrict 54.1 76 0.0016 37.9 10.6 110 134-243 217-356 (501)
496 COG1063 Tdh Threonine dehydrog 53.1 39 0.00085 38.3 7.6 103 134-245 168-272 (350)
497 cd04320 AspRS_cyto_N AspRS_cyt 51.4 16 0.00035 33.5 3.4 27 295-321 75-101 (102)
498 KOG3924|consensus 50.3 39 0.00085 38.6 6.7 123 114-244 177-310 (419)
499 TIGR03451 mycoS_dep_FDH mycoth 49.8 36 0.00078 38.3 6.7 96 133-242 175-276 (358)
500 cd08281 liver_ADH_like1 Zinc-d 49.1 34 0.00073 38.8 6.3 96 133-242 190-290 (371)
No 1
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-138 Score=1153.14 Aligned_cols=482 Identities=44% Similarity=0.751 Sum_probs=453.8
Q ss_pred cccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 295 GLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 295 ~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
..+++||.+++++|+|++ .++||.+.+.....+++||+|||||||++.++.++++|++++.++|+|| +++||+||+||
T Consensus 89 ~TGeiEv~a~~i~vln~s-~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~l-d~~gF~EiETP 166 (585)
T COG0173 89 PTGEIEVLAEEIEVLNAS-KTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFL-DDQGFLEIETP 166 (585)
T ss_pred CcceEEEEeeeEEEEecC-CCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-hhcCCeEeecC
Confidence 346899999999999999 8999999887778999999999999999999999999999999999999 78999999999
Q ss_pred eeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHH
Q psy8372 375 TLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDD 453 (883)
Q Consensus 375 ~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~d 453 (883)
+|++|||+||+.|.||++ ++|++|+|+||||+|||+||++|++|||||++|||+|+.+.+|+|||||+|+||+|.+.+|
T Consensus 167 iLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ed 246 (585)
T COG0173 167 ILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDEED 246 (585)
T ss_pred ccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCHHH
Confidence 999999999999999998 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 454 VMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSR 528 (883)
Q Consensus 454 vm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 528 (883)
||+++|+|++++|+. +++||+||||+|||.+||+||||+||+++|+| +++.
T Consensus 247 v~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~d-vt~~----------------------- 302 (585)
T COG0173 247 VMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELID-VTDL----------------------- 302 (585)
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehh-HHHH-----------------------
Confidence 999999999999986 67899999999999999999999999999999 8877
Q ss_pred CCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCc
Q psy8372 529 RGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNR 608 (883)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (883)
|+ +++| ++|+... ..+|.|++
T Consensus 303 ----~~-----------------------------~~~F--------~vF~~~~-----~~~~~v~a------------- 323 (585)
T COG0173 303 ----FK-----------------------------DSEF--------KVFSNAL-----ANGGRVKA------------- 323 (585)
T ss_pred ----hc-----------------------------CCCc--------ceehhhh-----hcCCeEEE-------------
Confidence 43 2233 3333333 44556666
Q ss_pred ccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCc
Q psy8372 609 SETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGD 688 (883)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 688 (883)
|++|+++.+||+++++|.++|+. +|.+++.|++++++. +.++++|+++++..++|.+++++++||
T Consensus 324 -------------i~vp~~~~~sRk~id~~~~~ak~-~gakGLa~ikv~~~~-~~gpi~kfl~e~~~~~l~~~~~~~~gD 388 (585)
T COG0173 324 -------------IVVPGGASLSRKQIDELTEFAKI-YGAKGLAYIKVEEDG-LKGPIAKFLSEEILEELIERLGAEDGD 388 (585)
T ss_pred -------------EEcCCccccCHHHHHHHHHHHHH-cCCCceEEEEEecCC-ccchHHHhcCHHHHHHHHHHhCCCCCC
Confidence 99999988999999999999987 679999999998776 899999999999999999999999999
Q ss_pred EEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCChhhh
Q psy8372 689 LIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPEDEHLL 767 (883)
Q Consensus 689 ~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d~~~~ 767 (883)
+++|.++....+.++||++|.+++ +.+ ++.+++.|+|+||||||||||+|+ |+|.++|||||||+++|...+
T Consensus 389 ~iff~A~~~~~~~~~lGalR~~l~-----~~l--~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l 461 (585)
T COG0173 389 IIFFVADKKKVVNKALGALRLKLG-----KEL--GLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELL 461 (585)
T ss_pred EEEEecCcHHHHHHHHHHHHHHHH-----HHh--CCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhh
Confidence 999999998899999999999999 655 899999999999999999999988 999999999999999999988
Q ss_pred ccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHH
Q psy8372 768 SSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSIL 843 (883)
Q Consensus 768 ~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l 843 (883)
.++|..++|.+||||+||+||||||+|||++++|+++|+.+|++++ .|+++|+||+||+|||||+|+|||||||+|
T Consensus 462 ~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll 541 (585)
T COG0173 462 EADPESVRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLL 541 (585)
T ss_pred hcCHHHhhhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred hCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 844 CGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 844 ~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 542 ~g~~sIReVIAFPKt~~a~dllt~APs~v~~~qL~El~i~ 581 (585)
T COG0173 542 TGAESIRDVIAFPKTQQAADLLTNAPSEVDEKQLKELSIK 581 (585)
T ss_pred cCCCchhheeecCCCccccccccCCCCcCCHHHHHhccee
Confidence 9999999999999999999999999999999999999985
No 2
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=6e-123 Score=1076.74 Aligned_cols=477 Identities=39% Similarity=0.665 Sum_probs=431.7
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc----CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcC-CCeEEE
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY----NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATH-RDFVEV 371 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~----~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~-~gF~EV 371 (883)
+++||.++++++++++..++||.+.+. ...++++|++|||||||++.++++|++||+|++++|+|| .+ +||+||
T Consensus 148 GeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl-~~~~gFiEV 226 (652)
T PLN02903 148 GSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYL-EDVHGFVEI 226 (652)
T ss_pred CCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 368999999999999977899887542 236799999999999999999999999999999999999 65 899999
Q ss_pred cCCeeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 372 ETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 372 ~TP~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
+||+|++++++||++|.++++ .++.+|||+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|.|
T Consensus 227 eTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 227 ETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred ECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 999999999999999888766 4578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGF 525 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 525 (883)
++|+|+++|+||+++++. +..||+||||.|||++||+||||+||+++|.| +++.
T Consensus 307 ~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~d-v~~~-------------------- 365 (652)
T PLN02903 307 LEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVD-VSDV-------------------- 365 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeE-hHHh--------------------
Confidence 999999999999999974 55799999999999999999999999999999 8877
Q ss_pred CCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccc
Q psy8372 526 DSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFR 605 (883)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (883)
|. +++| +.++..+ .++|.|+|
T Consensus 366 -------~~-----------------------------~~~f--------~~f~~~~-----~~~~~v~~---------- 386 (652)
T PLN02903 366 -------FA-----------------------------ESSF--------KVFAGAL-----ESGGVVKA---------- 386 (652)
T ss_pred -------hc-----------------------------CCCc--------hhhhhhh-----ccCCeEEE----------
Confidence 33 2233 2222222 45777777
Q ss_pred cCcccccCCCccceeeeecCCccccchhhH----HHHHHHHHHhcCCCcceEEEecCcccccc--cccccCChhhHHHHH
Q psy8372 606 SNRSETKSSGEDVYRILILPKDLDSTNKKI----TEYKNLAKKAFNDVKMSTVKVQDSLEWTN--KLTKILPDLNVEEFR 679 (883)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 679 (883)
|++|++++++++.+ +.+.+.++. |.+++.|+++.++..|.+ +++|+++++..++|.
T Consensus 387 ----------------i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 448 (652)
T PLN02903 387 ----------------ICVPDGKKISNNTALKKGDIYNEAIKS--GAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLL 448 (652)
T ss_pred ----------------EEeCCCCccchhhhcccHHHHHHHHHc--CCCceEEEEEcCCCCccCccchhhcCCHHHHHHHH
Confidence 89998777888888 777777764 788899999854435766 899999999999999
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQ 758 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~ 758 (883)
+.+++++||+|+|.+++...++++||+||.+++ +.+ ++.+++.|+|+||||||||+++|+ ++|.|+|||||+
T Consensus 449 ~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~-----~~l--~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTa 521 (652)
T PLN02903 449 AACGAGPGDLILFAAGPTSSVNKTLDRLRQFIA-----KTL--DLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTA 521 (652)
T ss_pred HHhCCCCCcEEEEECCcchHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCC
Confidence 999999999999999988889999999999999 655 788888999999999999999997 999999999999
Q ss_pred CCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceec
Q psy8372 759 PHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIAL 834 (883)
Q Consensus 759 p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~gl 834 (883)
|+++|...+ .++++++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||||+
T Consensus 522 p~~~d~~~l----~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~al 597 (652)
T PLN02903 522 PNPEDMGDL----SSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAY 597 (652)
T ss_pred CCCcchhhh----hhhhhhcceeEecceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceee
Confidence 999997654 489999999999999999999999999999999999999986 499999999999999999999
Q ss_pred cHHHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 835 GIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 835 GldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|||||||+|+|.+||||||+||||.+|+|||++||+.|+++||+||||+
T Consensus 598 GldRlvmll~~~~~IrdviaFPKt~~g~dlm~~aPs~v~~~qL~el~i~ 646 (652)
T PLN02903 598 GLDRLVMLLAGAKSIRDVIAFPKTTTAQCALTRAPSEVDDKQLQDLSIA 646 (652)
T ss_pred cHHHHHHHHcCCCchHheEecCCCCCccccccCCCCcCCHHHHHhcceE
Confidence 9999999999999999999999999999999999999999999999985
No 3
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=2.1e-122 Score=1082.21 Aligned_cols=480 Identities=38% Similarity=0.651 Sum_probs=435.5
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcC
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY-----------NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATH 365 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~-----------~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~ 365 (883)
+++||.++++++++++ .++||.+.+. ...++++|++|||||||++.++++|++||+|++++|+|| .+
T Consensus 95 g~iEl~~~~i~iL~~a-~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl-~~ 172 (706)
T PRK12820 95 GDIEVFVRELSILAAS-EALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFL-DS 172 (706)
T ss_pred CcEEEEeeEEEEEecC-CCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3689999999999998 4788877543 235789999999999999999999999999999999999 68
Q ss_pred CCeEEEcCCeeccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccc
Q psy8372 366 RDFVEVETPTLFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDI 444 (883)
Q Consensus 366 ~gF~EV~TP~l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~ 444 (883)
+||+||+||+|++++++||++|.++++ ..+.+|+|+||||+|||++|++|++|||||+||||+|+++++|||||||||+
T Consensus 173 ~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~ 252 (706)
T PRK12820 173 RGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDI 252 (706)
T ss_pred CCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccce
Confidence 999999999999999999999877765 3567788999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHhcc----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCC
Q psy8372 445 ELSFTTRDDVMRLIEELLCYCLNI----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRA 520 (883)
Q Consensus 445 e~~~~~~~dvm~~~E~li~~i~~~----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~ 520 (883)
||+|+|++|+|+++|+||+++++. ++.||+||||.|||++||+||||+||+++|.| +++.
T Consensus 253 E~af~d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d-~~~~--------------- 316 (706)
T PRK12820 253 EASFIDEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFAD-ATDI--------------- 316 (706)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEE-HHHH---------------
Confidence 999999999999999999999952 56799999999999999999999999999999 8766
Q ss_pred CCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecc
Q psy8372 521 GEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKN 600 (883)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (883)
|. +++| ..++.++ +++|.|+|
T Consensus 317 ------------~~-----------------------------~~~f--------~~f~~~~-----~~~g~v~~----- 337 (706)
T PRK12820 317 ------------FE-----------------------------NTRY--------GIFKQIL-----QRGGRIKG----- 337 (706)
T ss_pred ------------hc-----------------------------cCCc--------hhhhhhh-----ccCCeEEE-----
Confidence 33 2233 2333332 56788887
Q ss_pred ccccccCcccccCCCccceeeeecCCcc-ccchhhHHH-HH-HHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 601 VDNFRSNRSETKSSGEDVYRILILPKDL-DSTNKKITE-YK-NLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|++|+++ .++++.++. |. ++++. ++.+++.|++++++ .+.++++|++++++.++
T Consensus 338 ---------------------i~~~~~~~~~s~~~~~~~~~~~~~~~-~g~~gl~~~~~~~~-~~~~~~~~~~~~~~~~~ 394 (706)
T PRK12820 338 ---------------------INIKGQSEKLSKNVLQNEYAKEIAPS-FGAKGMTWMRAEAG-GLDSNIVQFFSADEKEA 394 (706)
T ss_pred ---------------------EEeCCCccccCHHHHHHHHHHHHHHH-cCCCceEEEEECCC-CcCCchhccCCHHHHHH
Confidence 8899876 489999998 76 88875 68889999988655 48899999999999999
Q ss_pred HHHHcCCCCCcEEEEecCCc-hhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 678 FRNKENLEEGDLIVVSWGKQ-EDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~-~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
|.+.+++++||+++|.+++. ..++++||+||.+++ +.+ ++.+++.|+|+||||||||+++++|+|.|+||||
T Consensus 395 l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~-----~~~--~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF 467 (706)
T PRK12820 395 LKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLA-----DRL--GLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF 467 (706)
T ss_pred HHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC
Confidence 99999999999999999865 568999999999999 555 7888889999999999999999999999999999
Q ss_pred CCCCCCChhhhcc-CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcc
Q psy8372 757 TQPHPEDEHLLSS-NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 757 t~p~~~d~~~~~~-~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG 831 (883)
|||+++|++++.+ ||.++|+++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||
T Consensus 468 T~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG 547 (706)
T PRK12820 468 TAPDREDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGG 547 (706)
T ss_pred CCcCccChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999985 99999999999999999999999999999999999999999875 489999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
||+|+|||||+|+|.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 548 ~a~G~dRlvm~l~~~~sirdviaFPK~~~g~dlm~~aPs~v~~~qL~el~i~ 599 (706)
T PRK12820 548 IALGLDRVVSMILQTPSIREVIAFPKNRSAACPLTGAPSEVAQEQLAELGLL 599 (706)
T ss_pred eeccHHHHHHHHcCCccHHHhcccCCCCCCCCcccCCCCcCCHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999985
No 4
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=2e-121 Score=1062.17 Aligned_cols=479 Identities=41% Similarity=0.707 Sum_probs=436.6
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++ .++|+.+. ....++++|++|||||||++.++++|++||+|++++|+|| .++||+||+||+|
T Consensus 89 g~iEl~~~~i~iL~~a-~~~P~~~~-~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff-~~~gFiEVeTP~L 165 (583)
T TIGR00459 89 GEIEILAESITLLNKS-KTPPLIIE-KTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFL-DQQGFLEIETPML 165 (583)
T ss_pred CcEEEEEeEEEEeecC-CCCCCccc-ccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 4689999999999999 57888775 3457889999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 377 FKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 377 ~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
++++++||++|.++++ ..+.+|+|+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|+|++|+|
T Consensus 166 ~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm 245 (583)
T TIGR00459 166 TKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVM 245 (583)
T ss_pred ccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHH
Confidence 9999999999999876 356778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRG 530 (883)
Q Consensus 456 ~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 530 (883)
+++|+||+++++. +++||+||||.|||++||+||||+||++++.| +++.
T Consensus 246 ~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d-~~~~------------------------- 299 (583)
T TIGR00459 246 ELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELID-VTDL------------------------- 299 (583)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCccccc-HHHh-------------------------
Confidence 9999999999974 56899999999999999999999999999999 7766
Q ss_pred CcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCccc
Q psy8372 531 PSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSE 610 (883)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (883)
|. +++| +.++..+ .++|.|+|
T Consensus 300 --~~-----------------------------~~~f--------~~~~~~~-----~~~~~v~~--------------- 320 (583)
T TIGR00459 300 --FK-----------------------------DSEF--------KVFSNLI-----NDGGRVKA--------------- 320 (583)
T ss_pred --hc-----------------------------cCCc--------chhhhhh-----ccCCeEEE---------------
Confidence 32 1222 2233222 45677776
Q ss_pred ccCCCccceeeeecCCc-cccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcE
Q psy8372 611 TKSSGEDVYRILILPKD-LDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDL 689 (883)
Q Consensus 611 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 689 (883)
|++|++ .+++++.+++|.++++. .+.+++.|+.++++. +.++++|+++++..++|.+.+++++||+
T Consensus 321 -----------i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~gd~ 387 (583)
T TIGR00459 321 -----------IRVPGGWAELSRKSIKELRKFAKE-YGAKGLAYLKVNEDG-INSPIKKFLDEKKGKILLERTDAQNGDI 387 (583)
T ss_pred -----------EEecCCcCccCHhHHHHHHHHHHH-cCCCcceEEEEcCCc-CCCchhhhcCHHHHHHHHHHhCCCCCCE
Confidence 889987 36899999999999985 577788899886553 5688999999999999999999999999
Q ss_pred EEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhcc
Q psy8372 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSS 769 (883)
Q Consensus 690 i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~ 769 (883)
+++.+++...++++||+||.+++ +.+ ++.+++.++|+||||||||+++|+|+|.|+|||||+|+++|+.++.+
T Consensus 388 ~~~~a~~~~~~~~~lG~lr~~l~-----~~~--~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~ 460 (583)
T TIGR00459 388 LLFGAGSKKIVLDALGALRLKLG-----KDL--GLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEA 460 (583)
T ss_pred EEEecCcchhHHHHHHHHHHHHH-----HHc--CCcCCCCceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhc
Confidence 99999988889999999999998 555 57778889999999999999997799999999999999999999999
Q ss_pred CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHHhC
Q psy8372 770 NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSILCG 845 (883)
Q Consensus 770 ~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~ 845 (883)
||.++++++||||+||+||||||+|||||++|+++|+++|++++ .|++||+||+||||||||+|||||||||+|||
T Consensus 461 ~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~ 540 (583)
T TIGR00459 461 APEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTG 540 (583)
T ss_pred ChhhhhhheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999876 39999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 846 TQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 846 ~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
.+|||||||||||.+|.|||++||+.|+++||+||||+
T Consensus 541 ~~sIRDVIaFPKt~~g~dlm~~aP~~v~~~qL~e~~i~ 578 (583)
T TIGR00459 541 TDNIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIK 578 (583)
T ss_pred CCchhheeecCCCCCCcccccCCCCcCCHHHHHHhCCc
Confidence 99999999999999999999999999999999999985
No 5
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-120 Score=1062.11 Aligned_cols=480 Identities=42% Similarity=0.728 Sum_probs=440.4
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++. ++|+.+.+....++++|++|||||+|++.+++++++||+|++++|+|| .++||+||+||+|
T Consensus 91 g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff-~~~gFiEV~TP~L 168 (588)
T PRK00476 91 GEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFL-DDNGFLEIETPIL 168 (588)
T ss_pred CcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 46899999999999996 899988654557899999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 377 FKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 377 ~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
++++++||++|.++++ ..+.+|+|+||||+|||++|++|++||||||||||+|+++++|||||||||+||+|++++|+|
T Consensus 169 ~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm 248 (588)
T PRK00476 169 TKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVM 248 (588)
T ss_pred ecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHH
Confidence 9999999999999876 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRG 530 (883)
Q Consensus 456 ~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 530 (883)
+++|+||+++++. +++||+||||.|||++||+||||+||+++|.| +++.
T Consensus 249 ~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~D-VT~i------------------------- 302 (588)
T PRK00476 249 ALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVD-VTDL------------------------- 302 (588)
T ss_pred HHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehh-HHHH-------------------------
Confidence 9999999999974 56899999999999999999999999999999 8877
Q ss_pred CcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCccc
Q psy8372 531 PSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSE 610 (883)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (883)
|. ++++ ..++.++ +.+|.|+|
T Consensus 303 --f~-----------------------------~s~f--------~vf~~~l-----~~gg~Vka--------------- 323 (588)
T PRK00476 303 --FK-----------------------------DSGF--------KVFAGAA-----NDGGRVKA--------------- 323 (588)
T ss_pred --hc-----------------------------cCCc--------hhhhhhh-----ccCCeEEE---------------
Confidence 32 2223 2232222 35677776
Q ss_pred ccCCCccceeeeecCCccccc-hhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcE
Q psy8372 611 TKSSGEDVYRILILPKDLDST-NKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDL 689 (883)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 689 (883)
|++|+.+.++ ++.++++.++++. ++.+++.|++..++. |.+++++++++++.++|.+.+++++||+
T Consensus 324 -----------I~vp~~~~~~~rk~id~L~e~AK~-~gakGL~~i~~~~~~-l~~~~akflsee~~~~L~e~l~~k~GDl 390 (588)
T PRK00476 324 -----------IRVPGGAAQLSRKQIDELTEFAKI-YGAKGLAYIKVNEDG-LKGPIAKFLSEEELAALLERTGAKDGDL 390 (588)
T ss_pred -----------EEecCCCCccchhHHHHHHHHHHH-cCCCceEEEEEcCCC-CcCchhhcCCHHHHHHHHHHhCCCCCCE
Confidence 8899776666 9999999999994 688889999876553 7889999999999999999999999999
Q ss_pred EEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCChhhhc
Q psy8372 690 IVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPEDEHLLS 768 (883)
Q Consensus 690 i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d~~~~~ 768 (883)
+++++++.+.++++||+||.+++ +.+ ++.+++.|+|+||||||||+++|+ |+|.|+|||||||+++|++++.
T Consensus 391 l~~~A~~~~~v~~aLG~LR~~L~-----~~~--~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~ 463 (588)
T PRK00476 391 IFFGADKAKVVNDALGALRLKLG-----KEL--GLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELE 463 (588)
T ss_pred EEEECCchHHHHHHHHHHHHHHH-----HHc--CCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhh
Confidence 99999988889999999999999 555 677778899999999999999997 9999999999999999999999
Q ss_pred c-CCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHHhhcCCCCCcceeccHHHHHHHH
Q psy8372 769 S-NPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQAFKYGCPPHGGIALGIDRLMSIL 843 (883)
Q Consensus 769 ~-~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a~~~G~pPhgG~glGldRlvm~l 843 (883)
+ ||.+++|++||||+||+||||||+||||+++|+++|+.+|++++ .|+|||+||+||+|||||||||||||||+|
T Consensus 464 ~~~p~~~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~ 543 (588)
T PRK00476 464 TTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLL 543 (588)
T ss_pred cCCHHHhhhheeeeEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999887 599999999999999999999999999999
Q ss_pred hCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 844 CGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 844 ~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|.+||||||||||+.+|+|||++||+.|+++||+||||+
T Consensus 544 ~~~~~irdvi~fp~~~~g~d~~~~aP~~v~~~ql~~~~~~ 583 (588)
T PRK00476 544 AGADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIR 583 (588)
T ss_pred cCCccHHheeeccCCCCccccccCCCCcCCHHHHHhcCcc
Confidence 9999999999999999999999999999999999999985
No 6
>KOG2411|consensus
Probab=100.00 E-value=2.4e-117 Score=958.87 Aligned_cols=484 Identities=46% Similarity=0.800 Sum_probs=413.2
Q ss_pred cccceEEEEeeeeeecccCCCCCccccccC----ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy8372 295 GLLSKEVIASNITVLNKADVNIPFHIKNYN----KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVE 370 (883)
Q Consensus 295 ~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~----~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~E 370 (883)
..+.+|+.+++++++|++.+.+|+.+.+.. ...+.+||++||||||++.++.++++||.+...||+||.+..||+|
T Consensus 121 ~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFve 200 (628)
T KOG2411|consen 121 KTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFVE 200 (628)
T ss_pred cccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCeee
Confidence 345688999999999999889999987654 4678999999999999999999999999999999999988788999
Q ss_pred EcCCeeccCCCCCCccceeccCCC-CceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 371 VETPTLFKRTPGGAREFVVPTHEP-NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 371 V~TP~l~~~~~~ga~~f~v~~~~~-~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+||+|.+.+||||++|.||++.+ |++|.|+||||+|||+||++|++||||||+|||+|+++.+|+|||||+|+||+|+
T Consensus 201 vETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~ 280 (628)
T KOG2411|consen 201 VETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFT 280 (628)
T ss_pred ccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEecc
Confidence 999999999999999999999966 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPG 524 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 524 (883)
+.+|+|+++|++|.++|.. +..||+||||+|||++||+||||+||+++|.| +++..+|.
T Consensus 281 ~~~dim~liEdll~~~ws~~k~~~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~d-v~~~~~~~--------------- 344 (628)
T KOG2411|consen 281 DQEDIMKLIEDLLRYVWSEDKGIQLPVPFPRITYADAMDKYGSDKPDTRFPLKLKD-VSESISKS--------------- 344 (628)
T ss_pred CHHHHHHHHHHHHHHhchhhcCCCCCCCcccccHHHHHHHhCCCCCcccCCcEecc-hHHhhhhh---------------
Confidence 9999999999999999987 56799999999999999999999999999999 77663221
Q ss_pred CCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecccccc
Q psy8372 525 FDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNF 604 (883)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (883)
|. +..+ +.+..++.
T Consensus 345 --------~~----------------------------------------~~~~--------~d~l~~~~---------- 358 (628)
T KOG2411|consen 345 --------FE----------------------------------------EALL--------SDGLISVE---------- 358 (628)
T ss_pred --------hh----------------------------------------hhhh--------cCCccceE----------
Confidence 00 0000 00000000
Q ss_pred ccCcccccCCCccceeeeecCCcccc--ch-hhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHH
Q psy8372 605 RSNRSETKSSGEDVYRILILPKDLDS--TN-KKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681 (883)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (883)
+++-.+... ++ +..+.++.+.+.+++...+. +.......|.+++.++..+....++.+.
T Consensus 359 -----------------~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~-~~~~~~~~w~~~~~~l~~e~~~~el~~~ 420 (628)
T KOG2411|consen 359 -----------------IVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFP-IEHDANKNWFKKFSSLTDEAVAIELIKQ 420 (628)
T ss_pred -----------------EEEeccccccchhhHHhHHHHHHhhcccccceee-eeccchhhhhhhchhhccchHHHHHHHH
Confidence 111111111 11 22233333333323222222 2222223599999888666677899999
Q ss_pred cCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-C-CccccccCcCCC
Q psy8372 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-G-TLESAHHPFTQP 759 (883)
Q Consensus 682 ~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~-~~~~~h~PFt~p 759 (883)
+++++||+|++..|.+..+.+.||++|..+. ..+..++.+++.+.|+||+|||||++.+| + +++|+|||||+|
T Consensus 421 ~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~-----~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP 495 (628)
T KOG2411|consen 421 LGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQ-----DLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAP 495 (628)
T ss_pred hCCCCCCEEEEeccCCccCCCchHHHHHHHH-----HHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCC
Confidence 9999999999999998889999999998887 66666788999999999999999996666 5 899999999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-hCCCCccc--HHHHHHHhhcCCCCCcceeccH
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSS--LQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-~~~~~~~~--~~~~l~a~~~G~pPhgG~glGl 836 (883)
+++|++.+++.|.++|+++||||+||+||||||+||||+++|+.+|+ .++++.+. ++|+|+||.+|||||||||+|+
T Consensus 496 ~~~Di~~L~s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGl 575 (628)
T KOG2411|consen 496 HPKDIDLLESAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGL 575 (628)
T ss_pred ChhhhhHhhcCchhhhcceeeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecH
Confidence 99999999999999999999999999999999999999999999996 67776654 4699999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|||+|+|||+.||||||||||+.+|+|+|++||+.|+++||+.|||+
T Consensus 576 DRlvaml~~a~sIRDVIAFPKt~~G~Dlls~sPs~ip~e~L~~Y~I~ 622 (628)
T KOG2411|consen 576 DRLVAMLTGAPSIRDVIAFPKTTTGADLLSNSPSEIPEEQLEDYNIR 622 (628)
T ss_pred HHHHHHHcCCCchheeeeccccCCccccccCCCCCCCHHHhhhccee
Confidence 99999999999999999999999999999999999999999999984
No 7
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-75 Score=647.97 Aligned_cols=322 Identities=33% Similarity=0.550 Sum_probs=269.2
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.+++++|++.+..++|++.+.+. +.++++++||||+|++..++++++|+.|++++|+|| .++||+||+||+|
T Consensus 85 ~g~El~v~~i~Vl~~a~~~~Pi~~~~~~--~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff-~~~gF~eV~tP~i 161 (435)
T COG0017 85 QGFELQVEKIEVLGEADPPYPIDKKEHS--ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFF-YENGFTEVHTPII 161 (435)
T ss_pred CCEEEEEEEEEEeeccCCCCCcCccccc--CHHHHHhchheeccccchHHHHhHHHHHHHHHHHHH-HhCCcEEecCceE
Confidence 4688999999999999546777765433 689999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCC-ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA-REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dv 454 (883)
++++++|+ ..|++.|+ +..+||+||||||||+++++ ++|||+|||+||+|+++|+|| +||||+|.||+|++++|+
T Consensus 162 ~~~~~EGg~elF~v~yf--~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~ 238 (435)
T COG0017 162 TASATEGGGELFKVDYF--DKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDV 238 (435)
T ss_pred eccCCCCCceeEEEeec--CcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHH
Confidence 99876555 56999987 56689999999999986655 999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------------C-CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------------P-TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------------~-~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
|+++|+||+++++. + +.||+||||.||++.+....
T Consensus 239 m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~----------------------- 295 (435)
T COG0017 239 MDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKG----------------------- 295 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcC-----------------------
Confidence 99999999999865 1 24677777777777743210
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
+.
T Consensus 296 --------------------~e---------------------------------------------------------- 297 (435)
T COG0017 296 --------------------FE---------------------------------------------------------- 297 (435)
T ss_pred --------------------Cc----------------------------------------------------------
Confidence 00
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
. -+|..++
T Consensus 298 --------------------------------------------------------~----------~~~GdDl------ 305 (435)
T COG0017 298 --------------------------------------------------------K----------VEWGDDL------ 305 (435)
T ss_pred --------------------------------------------------------c----------cCCCCcc------
Confidence 0 0011110
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
....++.||+ .... .|+||||||..
T Consensus 306 ------------------------~~e~Er~l~e----------------~~~~----~~vfv~~yP~~----------- 330 (435)
T COG0017 306 ------------------------GTEHERYLGE----------------EYFK----PPVFVTNYPKE----------- 330 (435)
T ss_pred ------------------------CCHHHHHHHH----------------HhCC----CcEEEEeCccc-----------
Confidence 1123444552 1111 25999999997
Q ss_pred ccCcC-CCCCCChhhhccCCCCccceeeEEEecC-eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCc
Q psy8372 753 HHPFT-QPHPEDEHLLSSNPLEVRGLHYDLVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 753 h~PFt-~p~~~d~~~~~~~~~~~~~~~~Dlv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhg 830 (883)
.+||+ +++++++.+ +.+|||+++| .||.|||||+||++.+.++++.+|+++++|+|||+++|||+||||
T Consensus 331 ~kpFYm~~~~d~p~~---------~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHa 401 (435)
T COG0017 331 IKPFYMRPDPDNPGT---------VASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHA 401 (435)
T ss_pred ccccccccCCCCCCe---------EEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCc
Confidence 89995 555655454 3899999999 899999999999999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||||+|||+|++||++||||||+|||+.+-
T Consensus 402 GfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 402 GFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred ccccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 9999999999999999999999999998653
No 8
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-73 Score=656.23 Aligned_cols=341 Identities=30% Similarity=0.468 Sum_probs=276.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|+... +..+.++|+++|||||| ++.++++|++||+|++++|+|| .++||+||+||+|
T Consensus 123 e~el~~~~~~vls~~~~plP~~~~--~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~-~~~gF~EVeTPiL 199 (491)
T PRK00484 123 ELSVKATELTLLTKSLRPLPDKFH--GLTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFL-DNRGFLEVETPML 199 (491)
T ss_pred cEEEEEeEEEEEeccCCCCCcccc--cccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCce
Confidence 478999999999999888887653 45678999999999998 6999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ ++++|| ++|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+|++|+|++|+
T Consensus 200 ~-~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~ 278 (491)
T PRK00484 200 Q-PIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDM 278 (491)
T ss_pred e-ccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHH
Confidence 6 457776 5798776656788899999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||++++.. ++.||+||||.||++++....+. +
T Consensus 279 m~~~E~li~~i~~~~~~~~~i~~~~~~~~~~~pf~rity~eai~~~~g~~~~--------~------------------- 331 (491)
T PRK00484 279 MDLTEELIRHLAQAVLGTTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFD--------D------------------- 331 (491)
T ss_pred HHHHHHHHHHHHHHHhCCceEecCCEeecCCCCceEEEHHHHHHHHhCCCcc--------c-------------------
Confidence 99999999999764 34699999999999986421000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
.
T Consensus 332 -------------~------------------------------------------------------------------ 332 (491)
T PRK00484 332 -------------M------------------------------------------------------------------ 332 (491)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
..+++.+++++
T Consensus 333 ----------------------------------~~~~~~~~~~~----------------------------------- 343 (491)
T PRK00484 333 ----------------------------------TDEEARALAKE----------------------------------- 343 (491)
T ss_pred ----------------------------------CHHHHHHHHHH-----------------------------------
Confidence 00011111111
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
++++.. ..+..|.+..+++ ++.++..+.+| +||+|||.. ..||+++
T Consensus 344 --~~~~~~------------~~~~~~~l~~~l~----~~~ve~~~~~P-----~Fi~dyP~~-----------~~pf~k~ 389 (491)
T PRK00484 344 --LGIEVE------------KSWGLGKLINELF----EEFVEPKLIQP-----TFITDYPVE-----------ISPLAKR 389 (491)
T ss_pred --cCCCCC------------CCCCHHHHHHHHH----HHHhhhhcCCc-----EEEECCChH-----------Hhhhhcc
Confidence 111100 0112344444444 24445556555 899999987 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcc-cH-HHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETS-SL-QHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~-~~-~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||+++|+||+||++|+|||++|+++|+. .|.++. .+ +|||+|++||||||||
T Consensus 390 ~~~~~~~---------~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG 460 (491)
T PRK00484 390 HREDPGL---------TERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGG 460 (491)
T ss_pred CCCCCCe---------EEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCe
Confidence 8887765 48999999999999999999999999999953 243333 23 6999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||+|+|+|++||||||+||+++.
T Consensus 461 ~GiGiDRLvm~ltg~~~Irdvi~FP~~~~ 489 (491)
T PRK00484 461 LGIGIDRLVMLLTDSPSIRDVILFPLMRP 489 (491)
T ss_pred EEEeHHHHHHHHhCCCcHHhcccCCCCCC
Confidence 99999999999999999999999999875
No 9
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-72 Score=642.77 Aligned_cols=326 Identities=35% Similarity=0.620 Sum_probs=271.3
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+.+.+....+.++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 86 ~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~ 164 (437)
T PRK05159 86 GVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFL-YENGFTEIFTPKIV 164 (437)
T ss_pred CEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCccc
Confidence 57899999999999987899877654455689999999999999999999999999999999999 68999999999998
Q ss_pred cCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHH
Q psy8372 378 KRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDV 454 (883)
Q Consensus 378 ~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dv 454 (883)
.+++ +|+..|++.++ ++.+||+||||+|||+++++|++|||||+||||||+++++|| |||||||+||+|.| ++++
T Consensus 165 ~~~~eg~~~~f~~~~~--~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~l 242 (437)
T PRK05159 165 ASGTEGGAELFPIDYF--EKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDV 242 (437)
T ss_pred ccCCCCCcceEeEEec--CCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHH
Confidence 7665 55666888764 688999999999999999999999999999999999998665 99999999999998 9999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
|+++|+||+++++. ++.||+||||.||++.+.... + .
T Consensus 243 m~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~------------~--~----------- 297 (437)
T PRK05159 243 MDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKG------------N--E----------- 297 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcC------------C--C-----------
Confidence 99999999998853 236888888888888753210 0 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. | +.++
T Consensus 298 ----------------~~------~----------------------~~~~----------------------------- 304 (437)
T PRK05159 298 ----------------IS------W----------------------GDDL----------------------------- 304 (437)
T ss_pred ----------------CC------C----------------------CCCC-----------------------------
Confidence 00 0 0000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
+
T Consensus 305 ----------------------------------~--------------------------------------------- 305 (437)
T PRK05159 305 ----------------------------------D--------------------------------------------- 305 (437)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
......|+.+.. +.+.. .++||+|||.. ..||
T Consensus 306 ---------------------~~~e~~l~~~~~------------~~~~~----~p~fi~~~P~~-----------~~pf 337 (437)
T PRK05159 306 ---------------------TEGERLLGEYVK------------EEYGS----DFYFITDYPSE-----------KRPF 337 (437)
T ss_pred ---------------------cHHHHHHHHHHh------------hhcCC----ceEEEecCchh-----------cCcc
Confidence 001122332211 11211 26999999987 6899
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++++++++.+ +++|||+++|+||+|||+|+||+++|+++|+..|++++.++|||+|++||+|||||||||
T Consensus 338 y~~~~~~~~~~---------~~~fdl~~~g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giG 408 (437)
T PRK05159 338 YTMPDEDDPEI---------SKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLG 408 (437)
T ss_pred eeeecCCCCCE---------EEEEEEEECCEEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEh
Confidence 6677777654 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+++|++|||||++|||+.+
T Consensus 409 idRl~m~~~g~~~Irdv~~FPr~~~ 433 (437)
T PRK05159 409 LERLTMKLLGLENIREAVLFPRDRH 433 (437)
T ss_pred HHHHHHHHcCCCchhEEeeccCCCC
Confidence 9999999999999999999999864
No 10
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=8.1e-72 Score=636.50 Aligned_cols=321 Identities=33% Similarity=0.597 Sum_probs=270.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++|+.++++++++++..++|+.+++....+.++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 83 ~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff-~~~gf~EV~TP~L~ 161 (428)
T TIGR00458 83 GFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFL-AEEGFIEVHTPKLV 161 (428)
T ss_pred cEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCcee
Confidence 37899999999999988899988766667889999999999999999999999999999999999 68999999999998
Q ss_pred cCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHH
Q psy8372 378 KRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 378 ~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm 455 (883)
++.+ +|+..|++.++ +..+||+||||+|||+++++|++||||||||||||+++++|| |||||||+||+|.|++|+|
T Consensus 162 ~~~~eg~~~~f~v~~~--~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm 239 (428)
T TIGR00458 162 ASATEGGTELFPITYF--EREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVM 239 (428)
T ss_pred cCCCCCCcceeeeEec--CCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHH
Confidence 7765 45566888765 577899999999999999999999999999999999998666 9999999999999999999
Q ss_pred HHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLP 517 (883)
Q Consensus 456 ~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~ 517 (883)
+++|+||++++.. .+.||+||||.||++.+.... + .
T Consensus 240 ~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g------------~--~------------ 293 (428)
T TIGR00458 240 DILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKG------------V--E------------ 293 (428)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcC------------C--C------------
Confidence 9999999999853 134788888888876531100 0 0
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEee
Q psy8372 518 RRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQ 597 (883)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (883)
+. |
T Consensus 294 ---------------~~------~-------------------------------------------------------- 296 (428)
T TIGR00458 294 ---------------IG------W-------------------------------------------------------- 296 (428)
T ss_pred ---------------CC------C--------------------------------------------------------
Confidence 00 0
Q ss_pred eccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 598 IKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|.++
T Consensus 297 -----------------~~~l----------------------------------------------------------- 300 (428)
T TIGR00458 297 -----------------GEDL----------------------------------------------------------- 300 (428)
T ss_pred -----------------cccc-----------------------------------------------------------
Confidence 0000
Q ss_pred HHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-
Q psy8372 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF- 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF- 756 (883)
....++.||+ .+..| +||+|||.. ..||
T Consensus 301 -------------------~~~~E~~l~~----------------~~~~p-----~fi~d~P~~-----------~~pfy 329 (428)
T TIGR00458 301 -------------------STEAEKALGE----------------EMDGL-----YFITDWPTE-----------IRPFY 329 (428)
T ss_pred -------------------chHHHHHHHH----------------HhCCC-----EEEEeCchh-----------cCccc
Confidence 0011223331 12233 899999987 7899
Q ss_pred CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccH
Q psy8372 757 TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 757 t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGl 836 (883)
++++++|+.+ +++|||+++|.||+||++|+||++.|+++++..|++++.++|||+|++|||||||||||||
T Consensus 330 ~~~~~~~p~~---------~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGi 400 (428)
T TIGR00458 330 TMPDEDNPEI---------SKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGA 400 (428)
T ss_pred ccccCCCCCE---------EEEEEEEeCCeEEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecH
Confidence 5787777655 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||+|+++|++|||||++|||+.+
T Consensus 401 dRL~m~l~g~~~Irdv~~FPr~~~ 424 (428)
T TIGR00458 401 ERFVMFLLGLKNIREAVLFPRDRK 424 (428)
T ss_pred HHHHHHHcCCCchheEEeccCCCC
Confidence 999999999999999999999864
No 11
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=1.1e-69 Score=628.71 Aligned_cols=345 Identities=28% Similarity=0.418 Sum_probs=276.8
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|... ++..+.++|+++||||+| ++..+++|++||.|+++||+|| +++||+||+||+|
T Consensus 180 elel~~~~i~vLs~~l~plP~k~--~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl-~~~gF~EVeTPiL 256 (553)
T PLN02502 180 ELSIFPTSFEVLTKCLLMLPDKY--HGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFL-DDRGFLEVETPML 256 (553)
T ss_pred CEEEEEeEEEEEeccCCCCCccc--ccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCee
Confidence 46899999999999987888643 345789999999999996 7999999999999999999999 6899999999999
Q ss_pred ccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+. ++|||. +|.+.++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|++|+
T Consensus 257 ~~-~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dl 335 (553)
T PLN02502 257 NM-IAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDM 335 (553)
T ss_pred ec-cCCCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHH
Confidence 75 466764 688766666888999999999999989999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCC-CCCCccccchhhhhhcCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGS-DKPDLRYDCKIMIAIKEQPPWPSGYPTRLPR 518 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~-~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~ 518 (883)
|+++|+||++++.. +..||+|+||.||++.+.. +.+. +
T Consensus 336 m~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~--------~------------------ 389 (553)
T PLN02502 336 MELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA--------D------------------ 389 (553)
T ss_pred HHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc--------C------------------
Confidence 99999999999853 3468999999999888632 2110 0
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeee
Q psy8372 519 RAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQI 598 (883)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (883)
..
T Consensus 390 --------------~~---------------------------------------------------------------- 391 (553)
T PLN02502 390 --------------LK---------------------------------------------------------------- 391 (553)
T ss_pred --------------CC----------------------------------------------------------------
Confidence 00
Q ss_pred ccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHH
Q psy8372 599 KNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEF 678 (883)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (883)
.....+.|.+++++
T Consensus 392 --------------------------------~~~~~~~l~~~~~~---------------------------------- 405 (553)
T PLN02502 392 --------------------------------SDEANAYLIAACEK---------------------------------- 405 (553)
T ss_pred --------------------------------HHHHHHHHHHHHHH----------------------------------
Confidence 00001112222221
Q ss_pred HHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCC
Q psy8372 679 RNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQ 758 (883)
Q Consensus 679 ~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~ 758 (883)
.+++.. ....+|.+..+++ ++.+++.+.+| +||+|||.. ..||++
T Consensus 406 ---~~~~~~------------~~~~~~~~l~~l~----~~~ve~~l~~P-----tFV~dyP~~-----------~splak 450 (553)
T PLN02502 406 ---FDVKCP------------PPQTTGRLLNELF----EEFLEETLVQP-----TFVLDHPVE-----------MSPLAK 450 (553)
T ss_pred ---cCCCCC------------CCCCHhHHHHHHH----HHHHHhhcCCC-----EEEECCccc-----------cCcccc
Confidence 111110 0112455555544 35566667666 899999987 799999
Q ss_pred CCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh----CCCC-cc---cHHHHHHHhhcCCCCCc
Q psy8372 759 PHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF----LNIE-TS---SLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 759 p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~----~~~~-~~---~~~~~l~a~~~G~pPhg 830 (883)
++++|+.+ +++|||+++|+||+||++|+|||.+|+++|+. .+.. .+ -.++||+|++|||||||
T Consensus 451 ~~~~~p~~---------~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~g 521 (553)
T PLN02502 451 PHRSKPGL---------TERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTG 521 (553)
T ss_pred cCCCCCCe---------EEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCc
Confidence 99988776 49999999999999999999999999999933 2221 11 24779999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||||||+|+|||++||||||+||..+.
T Consensus 522 G~GiGiDRLvMlltg~~sIrdVi~FP~~k~ 551 (553)
T PLN02502 522 GWGLGIDRLVMLLTDSASIRDVIAFPAMKP 551 (553)
T ss_pred eEEehHHHHHHHHcCCcchheeecCCcCCC
Confidence 999999999999999999999999998864
No 12
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=1.1e-69 Score=626.78 Aligned_cols=350 Identities=29% Similarity=0.480 Sum_probs=284.2
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
...+++||.++++++++++..++|... ++.++.++|+++||||+| ++..+++|++||.|++++|+|| .++||+||+
T Consensus 119 t~~gelel~~~~i~ilsk~~~plP~k~--~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl-~~~gF~EVe 195 (496)
T TIGR00499 119 TKTGELSVHVTELQILTKALRPLPDKF--HGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFL-DDRGFIEVE 195 (496)
T ss_pred CCCCcEEEEeeEEEEEecCCCCCCccc--cccCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCcCEEEe
Confidence 335679999999999999988888654 345688999999999999 5899999999999999999999 689999999
Q ss_pred CCeeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 373 TPTLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
||+|++ .+||| ++|.++++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|
T Consensus 196 TP~L~~-~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 196 TPMLQV-IPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred CCeeec-CCCCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 999964 46776 569988766678899999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~ 515 (883)
++|+|+++|+||++++.. ++.||+||||.||++.|+... ..
T Consensus 275 ~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~~~pf~rit~~eai~~~~~~~--------------g~---------- 330 (496)
T TIGR00499 275 YEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEAIKKYDMET--------------GI---------- 330 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHHHhc--------------CC----------
Confidence 999999999999998654 346999999999999765310 00
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEE
Q psy8372 516 LPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVL 595 (883)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (883)
.+. ++
T Consensus 331 ----------------~~~-------------------------------~~---------------------------- 335 (496)
T TIGR00499 331 ----------------DFD-------------------------------DL---------------------------- 335 (496)
T ss_pred ----------------Cch-------------------------------hc----------------------------
Confidence 000 00
Q ss_pred eeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhH
Q psy8372 596 FQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNV 675 (883)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (883)
...+++.+++++
T Consensus 336 -------------------------------------~~~~~l~~~~~~------------------------------- 347 (496)
T TIGR00499 336 -------------------------------------KDFETAKALAKK------------------------------- 347 (496)
T ss_pred -------------------------------------CCHHHHHHHHHH-------------------------------
Confidence 001222223322
Q ss_pred HHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccC
Q psy8372 676 EEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHP 755 (883)
Q Consensus 676 ~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~P 755 (883)
.+++.. .....+|++..+++ ++.+++.+.+| +||+|||.. ..|
T Consensus 348 ------~~~~~~-----------~~~~~~~~~l~~~~----~~~ve~~l~~P-----~fv~dyP~~-----------~sp 390 (496)
T TIGR00499 348 ------IGIEVA-----------EKSLTLGHILNELF----EQFLEHTLIQP-----TFITHYPAE-----------ISP 390 (496)
T ss_pred ------cCCCcC-----------CCCCCHHHHHHHHH----HHHHHhccCCC-----EEEECCchh-----------cCc
Confidence 111100 00013455555555 35556666655 899999997 799
Q ss_pred cCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH------hCCCCcccH--HHHHHHhhcCCC
Q psy8372 756 FTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH------FLNIETSSL--QHMIQAFKYGCP 827 (883)
Q Consensus 756 Ft~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~------~~~~~~~~~--~~~l~a~~~G~p 827 (883)
|++++++|+.+ +++|||+++|+||+||++|+|||++|+++|+ ..|.+++.+ +|||+|++||||
T Consensus 391 lak~~~~~p~~---------~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~P 461 (496)
T TIGR00499 391 LAKRNPSNPEF---------TDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMP 461 (496)
T ss_pred ccccCCCCCCe---------EEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCC
Confidence 99998887765 4899999999999999999999999999984 356776654 899999999999
Q ss_pred CCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||||+|+|||++||||||+||++++
T Consensus 462 P~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 462 PTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 999999999999999999999999999999875
No 13
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.4e-69 Score=622.23 Aligned_cols=347 Identities=24% Similarity=0.432 Sum_probs=282.1
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
...+++||.++++++++++..++|..+. +.++.++|+++||||+| ++..+++|++||+|++++|+|| +++||+||+
T Consensus 131 t~~gelel~~~~~~llsk~~~plP~~~~--~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~-~~~gFiEVe 207 (505)
T PRK12445 131 TQTGELSIHCTELRLLTKALRPLPDKFH--GLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVE 207 (505)
T ss_pred cCCCcEEEEEeEEEEEecCCCCCCcccc--cccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEee
Confidence 3357899999999999999888887653 44689999999999999 5899999999999999999999 689999999
Q ss_pred CCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 373 TPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
||+|. +++|||. +|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+|
T Consensus 208 TPiL~-~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 208 TPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred CCeeE-ecCCCCcccceecccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeecCC
Confidence 99996 4578875 68776666678889999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTR 515 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~ 515 (883)
++|+|+++|+||++++.. +++||+||||.||++.|+.. . + +...
T Consensus 287 ~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~~~-~---------~-~~~~---------- 345 (505)
T PRK12445 287 YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-T---------D-MADL---------- 345 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCceeccCCCCceEEEHHHHHHHHhCC-C---------C-cccc----------
Confidence 999999999999998653 24699999999999997531 0 0 0000
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEE
Q psy8372 516 LPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVL 595 (883)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (883)
T Consensus 346 -------------------------------------------------------------------------------- 345 (505)
T PRK12445 346 -------------------------------------------------------------------------------- 345 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhH
Q psy8372 596 FQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNV 675 (883)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (883)
...+++.+++++
T Consensus 346 -------------------------------------~~~~~~~~~~~~------------------------------- 357 (505)
T PRK12445 346 -------------------------------------DNFDAAKALAES------------------------------- 357 (505)
T ss_pred -------------------------------------CCHHHHHHHHHH-------------------------------
Confidence 011222233332
Q ss_pred HHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccC
Q psy8372 676 EEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHP 755 (883)
Q Consensus 676 ~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~P 755 (883)
.+++.. ....+|++..+++ +..+|+.+.+| +||+|||.. ..|
T Consensus 358 ------~~~~~~------------~~~~~~~l~~~~~----~~~vE~~l~~P-----~Fv~dyP~~-----------~sp 399 (505)
T PRK12445 358 ------IGITVE------------KSWGLGRIVTEIF----DEVAEAHLIQP-----TFITEYPAE-----------VSP 399 (505)
T ss_pred ------cCCCCC------------CCCCHHHHHHHHH----HHHHHhhcCCC-----EEEECCCch-----------hCc
Confidence 111100 0012344555444 34445556655 899999987 799
Q ss_pred cCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcccH--HHHHHHhhcCCC
Q psy8372 756 FTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSSL--QHMIQAFKYGCP 827 (883)
Q Consensus 756 Ft~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~~--~~~l~a~~~G~p 827 (883)
|++++++|+.+ +++|||+++|.||+||++|+|||++|+++|+. .|.+++.. +|||+|++||||
T Consensus 400 lak~~~~~p~~---------~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~P 470 (505)
T PRK12445 400 LARRNDVNPEI---------TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 470 (505)
T ss_pred ccccCCCCCCc---------eEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCC
Confidence 99988887665 48999999999999999999999999999953 36655543 799999999999
Q ss_pred CCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||||+|+|||++||||||+||+++.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999875
No 14
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-68 Score=618.12 Aligned_cols=369 Identities=25% Similarity=0.465 Sum_probs=279.4
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccC--------ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhc
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYN--------KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLAT 364 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~--------~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~ 364 (883)
+...+++||.++++++++++..++|+.+++.. ..+.++||+|||||||++..+++|++||.|++++|+|| .
T Consensus 150 ~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~~~~R~fl-~ 228 (550)
T PTZ00401 150 STSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFL-I 228 (550)
T ss_pred CCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45667899999999999999888999886531 24689999999999999999999999999999999999 6
Q ss_pred CCCeEEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecc
Q psy8372 365 HRDFVEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQL 442 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~l 442 (883)
++||+||+||+|+.+. ++|++.|.++|+ +..+||+||||+|||+++++|++||||||||||+|+++|+|| ||||||
T Consensus 229 ~~gFiEV~TP~L~~~~~egga~~F~v~yf--~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~L 306 (550)
T PTZ00401 229 DSDFCEIHSPKIINAPSEGGANVFKLEYF--NRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGL 306 (550)
T ss_pred HCCCEEEeCCccccCCCCccccccccccC--CCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhh
Confidence 8999999999998875 568888999876 688999999999999998899999999999999999998777 999999
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHhccCCC------------Cceee--ehHHHHHH-hCCCCCCccccchhhhhhcCCC
Q psy8372 443 DIELSFT-TRDDVMRLIEELLCYCLNIPTR------------TFSRI--SYNDAISL-YGSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 443 e~e~~~~-~~~dvm~~~E~li~~i~~~~~~------------~f~ri--ty~ea~~~-yg~~~~d~r~~~~~~~~~~~~~ 506 (883)
|+||+|. +++++|+++|+||.+++..+.. ||..+ ++.+++.+ .|.+... ..
T Consensus 307 e~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~------------~~- 373 (550)
T PTZ00401 307 DVEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVIS------------EG- 373 (550)
T ss_pred hhhhHhcCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCccc------------cc-
Confidence 9999986 6999999999999999865322 22222 22222222 1221100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
.. |. ..+....
T Consensus 374 --------------------------~~-------------------------~~--------------~~l~~~~---- 384 (550)
T PTZ00401 374 --------------------------VE-------------------------PT--------------DKYQARV---- 384 (550)
T ss_pred --------------------------cc-------------------------ch--------------HHHHHHH----
Confidence 00 00 0000000
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.+ .+. .+.+....+..+++++.++..
T Consensus 385 ~~-------------------------~~~------------~~~rl~y~eai~lL~~~~~~~----------------- 410 (550)
T PTZ00401 385 HN-------------------------MDS------------RMLRINYMHCIELLNTVLEEK----------------- 410 (550)
T ss_pred Hh-------------------------cCC------------CcccccHHHHHHHHHHhcccC-----------------
Confidence 00 000 011222233333433321100
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe-cCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD-FPLFLPSD 745 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d-fPl~~~~~ 745 (883)
.+.|+ +-.......||++..+ .+..| +||+| ||..
T Consensus 411 -----------------~~~~~------dl~~~~E~~L~~~v~~------------~~~~~-----~fI~d~yP~~---- 446 (550)
T PTZ00401 411 -----------------MAPTD------DINTTNEKLLGKLVKE------------RYGTD-----FFISDRFPSS---- 446 (550)
T ss_pred -----------------CCccc------ccCchHHHHHHHHHHH------------hcCCC-----EEEECCCChh----
Confidence 00110 0112344567765432 23333 89998 9997
Q ss_pred CCCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhc
Q psy8372 746 SGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKY 824 (883)
Q Consensus 746 ~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~ 824 (883)
..|| +|++++|+.+ +++|||+++|.||+||++|+|||++|+++|+.+|++++.++|||+|++|
T Consensus 447 -------~rpFY~~~~~~dp~~---------s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~ 510 (550)
T PTZ00401 447 -------ARPFYTMECKDDERF---------TNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRL 510 (550)
T ss_pred -------hCchhcCcCCCCCCE---------EEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHc
Confidence 7998 6898888765 4999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 825 GCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 825 G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||||||||||||+|+++|++|||||++|||+.+
T Consensus 511 G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~ 546 (550)
T PTZ00401 511 GAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQ 546 (550)
T ss_pred CCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCC
Confidence 999999999999999999999999999999999864
No 15
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=1.5e-67 Score=610.84 Aligned_cols=349 Identities=28% Similarity=0.499 Sum_probs=276.5
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------------CccchhhhcccccccccChhhhHHHHHHHHHHHHHH
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY-----------------NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~-----------------~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR 359 (883)
+++||.++++++++++..++|+.+++. ...+.++||+|||||||++..+++|++||.|++++|
T Consensus 157 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs~i~~~~R 236 (530)
T PLN02850 157 QQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFR 236 (530)
T ss_pred ccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 379999999999999988999988652 234679999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-c
Q psy8372 360 EFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-P 437 (883)
Q Consensus 360 ~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~ 437 (883)
+|| .++||+||+||+|+.+.+ +|+..|.++|+ ++.+||+||||+|||+++++|++||||||||||||+++++|| +
T Consensus 237 ~fl-~~~gF~EV~TP~L~~~~~egga~~F~v~yf--~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~ 313 (530)
T PLN02850 237 EFL-LSKGFVEIHTPKLIAGASEGGSAVFRLDYK--GQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLC 313 (530)
T ss_pred HHH-HHCCcEEEeCCccccCCCccccceeeeccC--CcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccch
Confidence 999 689999999999987765 66778999876 688999999999999999999999999999999999988888 9
Q ss_pred ceecccccccCC-CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 438 EFTQLDIELSFT-TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 438 EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
||||||+||+|. +++|+|+++|+||++++..+.. +|.+.++.++. ..+|..
T Consensus 314 EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~-----~~~~el~~i~~-----------------~~~~~~------ 365 (530)
T PLN02850 314 EFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNE-----RCKKELEAIRE-----------------QYPFEP------ 365 (530)
T ss_pred hhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHhhcc-----------------cCCcch------
Confidence 999999999998 4999999999999999876432 12222222111 100000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. ++.
T Consensus 366 ----------------~~------------------------------------------~~~----------------- 370 (530)
T PLN02850 366 ----------------LK------------------------------------------YLP----------------- 370 (530)
T ss_pred ----------------hh------------------------------------------hcC-----------------
Confidence 00 000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
...+...+++.+++++
T Consensus 371 --------------------------------~~~rit~~ea~~~L~~-------------------------------- 386 (530)
T PLN02850 371 --------------------------------KTLRLTFAEGIQMLKE-------------------------------- 386 (530)
T ss_pred --------------------------------CcccCCHHHHHHHHHH--------------------------------
Confidence 0011123333344332
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
.|++..+. .+........||.+..+.+ .. .|+||+|||.. ..||
T Consensus 387 -----~g~~~~~~----~dl~~~~E~~Lg~~v~~~~------------~~----~~~ii~~yP~~-----------~~pf 430 (530)
T PLN02850 387 -----AGVEVDPL----GDLNTESERKLGQLVKEKY------------GT----DFYILHRYPLA-----------VRPF 430 (530)
T ss_pred -----cCCCCCCC----CCcchHHHHHHHHHHHHhc------------CC----CeEEEECCccc-----------cCch
Confidence 11111100 0112235567777655432 12 36889999997 7999
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++|+++|+.+ +++|||+++|.||+||++|+|||+.|+++++.+|++++.++|||+|++||||||||||||
T Consensus 431 Y~~~~~~d~~~---------~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiG 501 (530)
T PLN02850 431 YTMPCPDDPKY---------SNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVG 501 (530)
T ss_pred hccccCCCCCe---------EEEEEEEeCCEEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEc
Confidence 7888888765 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+++|++|||||++|||+.+
T Consensus 502 lERLvM~l~g~~nIr~v~~FPR~p~ 526 (530)
T PLN02850 502 LERVVMLFCGLNNIRKTSLFPRDPQ 526 (530)
T ss_pred HHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999865
No 16
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-67 Score=611.24 Aligned_cols=355 Identities=22% Similarity=0.335 Sum_probs=279.8
Q ss_pred ccccceEEEEeeeeeecccC-CCCCc---cccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCe
Q psy8372 294 WGLLSKEVIASNITVLNKAD-VNIPF---HIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDF 368 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~-~~lP~---~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF 368 (883)
...++++|.++++++++++. .++|. .++-++..+.++|+++|||||| ++..+++|++||+|+++||+|| +++||
T Consensus 174 t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff-~~~gF 252 (659)
T PTZ00385 174 MQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYF-NERNF 252 (659)
T ss_pred cCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCC
Confidence 34678999999999999964 22221 1122456789999999999997 6889999999999999999999 68999
Q ss_pred EEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 369 VEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 369 ~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
+||+||+|++.. ++||++|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++
T Consensus 253 lEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a 332 (659)
T PTZ00385 253 VEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAA 332 (659)
T ss_pred EEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeeee
Confidence 999999997654 4467889998776677889999999999999999999999999999999999888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcC
Q psy8372 448 FTTRDDVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKE 504 (883)
Q Consensus 448 ~~~~~dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~ 504 (883)
|.|++|+|+++|+||++++.. +.+||+|+||.|++.++ |.|.++
T Consensus 333 ~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~------------- 399 (659)
T PTZ00385 333 YHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPP------------- 399 (659)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCc-------------
Confidence 999999999999999998643 12478888855555554 332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhh
Q psy8372 505 QPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSE 584 (883)
Q Consensus 505 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (883)
+.++
T Consensus 400 -----------------------------------------------------------~~dl----------------- 403 (659)
T PTZ00385 400 -----------------------------------------------------------PNEL----------------- 403 (659)
T ss_pred -----------------------------------------------------------cccC-----------------
Confidence 0000
Q ss_pred hhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccc
Q psy8372 585 ICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTN 664 (883)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (883)
.+...++.++.++++
T Consensus 404 ---------------------------------------------~~~~e~~~~~~~~~~-------------------- 418 (659)
T PTZ00385 404 ---------------------------------------------NTPKGIAYMSVVMLR-------------------- 418 (659)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHH--------------------
Confidence 000111222223322
Q ss_pred cccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCC
Q psy8372 665 KLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPS 744 (883)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~ 744 (883)
.|++.. ....+|.+..+++ +..++..+.+| +||+|||..
T Consensus 419 -----------------~gi~~~------------~~~~~g~~~~~lf----e~~ve~~l~qP-----tFI~dyP~e--- 457 (659)
T PTZ00385 419 -----------------YNIPLP------------PVRTAAKMFEKLI----DFFITDRVVEP-----TFVMDHPLF--- 457 (659)
T ss_pred -----------------cCCCCC------------cccchhHHHHHHH----HHHHHHhhCCc-----EEEeCCccc---
Confidence 222111 1134566666665 34455566665 899999997
Q ss_pred CCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-----hCCCCcccH---H
Q psy8372 745 DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-----FLNIETSSL---Q 816 (883)
Q Consensus 745 ~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-----~~~~~~~~~---~ 816 (883)
..||++++++|+.+ +++|||+++|.||+||++|+|||.+|+++|+ ..+.+++.+ +
T Consensus 458 --------~sPLak~~~~dp~~---------teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~De 520 (659)
T PTZ00385 458 --------MSPLAKEQVSRPGL---------AERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDE 520 (659)
T ss_pred --------cCcccccCCCCCCe---------EEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHH
Confidence 79999999888776 4999999999999999999999999999993 345666655 8
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
+||+|++||||||||+|||||||+|+|||++||||||+||.++.-
T Consensus 521 dfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 521 TFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred HHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 999999999999999999999999999999999999999998865
No 17
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=7.8e-69 Score=598.19 Aligned_cols=313 Identities=37% Similarity=0.631 Sum_probs=245.9
Q ss_pred chhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-Cccceecc---CCCCceeeEec
Q psy8372 327 KEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPT---HEPNKFYSLVQ 402 (883)
Q Consensus 327 ~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~---~~~~~~~~L~~ 402 (883)
++++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|++++++| +..|.+++ ...++.+||+|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff-~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFF-DKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHH-HhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 478999999999999999999999999999999999 68999999999999988665 78899982 12368899999
Q ss_pred CHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhcc-------------
Q psy8372 403 SPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNI------------- 468 (883)
Q Consensus 403 Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~------------- 468 (883)
|||+|||+++++|++||||||||||+|++++.|| |||||||||++|+|++++|+++|+||+++++.
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 9999999999999999999999999999966666 99999999999999999999999999999863
Q ss_pred CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q psy8372 469 PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMS 548 (883)
Q Consensus 469 ~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (883)
++.||+|+||.||++.|+.++||++++.++.+ +.+.
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~-~~~~------------------------------------------- 195 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPDLRFDEELDD-LAEI------------------------------------------- 195 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHH-HHHH-------------------------------------------
T ss_pred ccCCceEeeehHHHHHhhcccccchhHHHHHH-HHHH-------------------------------------------
Confidence 44679999999999999998888777654443 1000
Q ss_pred chhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCcc
Q psy8372 549 SYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDL 628 (883)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (883)
T Consensus 196 -------------------------------------------------------------------------------- 195 (335)
T PF00152_consen 196 -------------------------------------------------------------------------------- 195 (335)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHH
Q psy8372 629 DSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708 (883)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr 708 (883)
.+ . +. ..|.+.
T Consensus 196 --------------~~-~------------------------------------~~------------------~~~~~l 206 (335)
T PF00152_consen 196 --------------EE-L------------------------------------EF------------------EVGRLL 206 (335)
T ss_dssp --------------HH-T------------------------------------TH------------------HCHHHH
T ss_pred --------------hc-c------------------------------------cc------------------hHHHHH
Confidence 00 0 00 000010
Q ss_pred HHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEE
Q psy8372 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEI 788 (883)
Q Consensus 709 ~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei 788 (883)
.... ++ .|..+....++||+|||.. .+||+++.+++.. ..+++|||+++|+||
T Consensus 207 ~~~~----e~----~L~~~~~~~p~fI~~~P~~-----------~~pf~~~~~~~~~--------~~~~~fdl~~~g~Ei 259 (335)
T PF00152_consen 207 SEEV----EP----YLVEKYFTDPVFITDYPAE-----------QSPFYKPPNDDDP--------GVAERFDLYIPGGEI 259 (335)
T ss_dssp HHHH----HH----HHHHHHSSSEEEEEEEBGG-----------GSTTTBBBSSSTT--------TBBSEEEEEETTEEE
T ss_pred HHHH----HH----HhhhcccCCcEEEEecccc-----------cCccccccccccc--------ccccceeEEEeCEEE
Confidence 1000 00 0000011256999999998 7999998877651 226999999999999
Q ss_pred eeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 789 GGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 789 ~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+|||+|+||+++|+++|+..++++++ ++|||+|+++|+|||||||||+|||+|+++|++||||||+|||+++
T Consensus 260 ~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 260 ANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp EEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred ehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 99999999999999999999988777 9999999999999999999999999999999999999999999863
No 18
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-67 Score=649.66 Aligned_cols=341 Identities=28% Similarity=0.418 Sum_probs=276.1
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++|+.++++++++++..++|.+. ++.++.++|+++|||||| ++..+++|++||+|+++||+|| +++||+||+||+|
T Consensus 721 e~ei~~~~i~ll~k~~~plP~k~--~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl-~~~gFlEVeTPiL 797 (1094)
T PRK02983 721 TLSLLVTSWRLAGKCLRPLPDKW--KGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETL-VARGFLEVETPIL 797 (1094)
T ss_pred CEEEEEeEEEEEeccCcCCCCcc--ccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCEe
Confidence 56788999999999987888654 356788999999999997 5899999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
++ +++|| ++|.++++..+..+||+||||+|+|+++++|++||||||||||||+++++|+|||||||+|++|.|++|+
T Consensus 798 ~~-~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~ 876 (1094)
T PRK02983 798 QQ-VHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTM 876 (1094)
T ss_pred ec-cCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHH
Confidence 74 45554 5698877767788999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc--------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI--------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 455 m~~~E~li~~i~~~--------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|+++|+||+++++. ++.||+||||.||++++.... +...
T Consensus 877 m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~------------~~~~--------- 935 (1094)
T PRK02983 877 RDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVDISGPWPVVTVHDAVSEALGEE------------IDPD--------- 935 (1094)
T ss_pred HHHHHHHHHHHHHHHhCCcEEeeCCccccccccccCCCceEEEHHHHHHHHhCCC------------CCCC---------
Confidence 99999999998653 235888888888887752210 0000
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
T Consensus 936 -------------------------------------------------------------------------------- 935 (1094)
T PRK02983 936 -------------------------------------------------------------------------------- 935 (1094)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
...+++++++++
T Consensus 936 --------------------------------------~~~~~l~~~~~~------------------------------ 947 (1094)
T PRK02983 936 --------------------------------------TPLAELRKLCDA------------------------------ 947 (1094)
T ss_pred --------------------------------------CCHHHHHHHHHH------------------------------
Confidence 001122222222
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
.+++..+ ....|++..+++ ++.+|+.+.+| +||+|||.. ..
T Consensus 948 -------~~i~~~~------------~~~~~~l~~~l~----~~~ve~~~~~P-----~Fv~dyP~~-----------~s 988 (1094)
T PRK02983 948 -------AGIPYRT------------DWDAGAVVLELY----EHLVEDRTTFP-----TFYTDFPTS-----------VS 988 (1094)
T ss_pred -------cCCCCCC------------CCCHhHHHHHHH----HHHHHhhcCCC-----EEEECCCcc-----------cc
Confidence 1111110 012355555555 35555566665 899999987 79
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-----CCCCcccH---HHHHHHhhcCC
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-----LNIETSSL---QHMIQAFKYGC 826 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-----~~~~~~~~---~~~l~a~~~G~ 826 (883)
||++++++|+.+ +++|||+++|+||+||++|+|||.+|+++|+. .+.+++.+ +|||+|++|||
T Consensus 989 pla~~~~~~p~~---------~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGm 1059 (1094)
T PRK02983 989 PLTRPHRSDPGL---------AERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAM 1059 (1094)
T ss_pred cccccCCCCCCe---------eEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCC
Confidence 999999888765 49999999999999999999999999999943 35677765 69999999999
Q ss_pred CCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 827 pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
|||||+|||||||+|+|||. ||||||+||+.+.
T Consensus 1060 PP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1060 PPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred CCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 99999999999999999995 9999999999875
No 19
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-67 Score=585.00 Aligned_cols=350 Identities=29% Similarity=0.445 Sum_probs=297.4
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccC-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~-~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
.+..+++.+.++++++++||+.|+|-.. ++.++.|+|+|+|||||.. +..+.+|..||+|+++||+|| +++||+||
T Consensus 126 ~T~~GelSv~v~~~~lLsKsL~pLPeK~--hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl-~~~gFlEV 202 (502)
T COG1190 126 KTKTGELSVSVEELRLLSKSLRPLPEKF--HGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFL-DDRGFLEV 202 (502)
T ss_pred ecCCCceEEEEEEEeeecccCCCCChhh--cCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCeEe
Confidence 4556789999999999999999999543 5678899999999999996 789999999999999999999 78999999
Q ss_pred cCCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+| +..+|||. +|.+.++..+..+||++||++|++.+++||++|||+|+++||||+.+++|+|||||||+|+||+
T Consensus 203 ETP~l-q~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYa 281 (502)
T COG1190 203 ETPML-QPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYA 281 (502)
T ss_pred ccccc-cccCCCcccccceeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHHh
Confidence 99999 67889874 7999988878889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|++|+|+++|+||++++.. +++||+|+++.||+.+|.... . |
T Consensus 282 Dy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~---------------~--~------ 338 (502)
T COG1190 282 DYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVD---------------F--D------ 338 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCcc---------------c--c------
Confidence 9999999999999999865 667999999999998864310 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
T Consensus 339 -------------------------------------------------------------------------------- 338 (502)
T COG1190 339 -------------------------------------------------------------------------------- 338 (502)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
.-...++++++|++.
T Consensus 339 ------------------------------------~~~~~e~~~~~ak~~----------------------------- 353 (502)
T COG1190 339 ------------------------------------DLFDDEEAKELAKKH----------------------------- 353 (502)
T ss_pred ------------------------------------ccCCHHHHHHHHHHh-----------------------------
Confidence 001123445555542
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
+++.. +.. . +.+|++..+++ ++.+|..+.+| .||+|||.. .+
T Consensus 354 --------~i~~~--------~~~-~-~~~g~ll~~lF----e~~vE~~liqP-----TFv~d~P~e-----------iS 395 (502)
T COG1190 354 --------GIEVE--------KYG-T-WGLGHLLNELF----EELVEAKLIQP-----TFVTDHPVE-----------IS 395 (502)
T ss_pred --------CCCcC--------ccc-c-ccHHHHHHHHH----HHHhhhhhcCC-----ceeecCccc-----------cC
Confidence 11110 000 1 45788888888 46677788888 799999997 79
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCccc--HHHHHHHhhcCC
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSS--LQHMIQAFKYGC 826 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~--~~~~l~a~~~G~ 826 (883)
|+++++++++.++ ++|||+|+|.||+||++++|||..|+++|++ .|-+.+. .++|++|++|||
T Consensus 396 PLak~~~~~p~~t---------eRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGm 466 (502)
T COG1190 396 PLAKRHRSNPGLT---------ERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGM 466 (502)
T ss_pred ccccCCCCCcchh---------hhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCC
Confidence 9999999998875 8999999999999999999999999999943 3433332 478999999999
Q ss_pred CCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 827 PPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 827 pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||+||+|||||||||+|||.+||||||+||-.++.
T Consensus 467 PPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~~ 501 (502)
T COG1190 467 PPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPE 501 (502)
T ss_pred CCCCCccccHHHHHHHHcCCCchhheecccccCCC
Confidence 99999999999999999999999999999987653
No 20
>KOG0556|consensus
Probab=100.00 E-value=4.9e-68 Score=563.68 Aligned_cols=382 Identities=29% Similarity=0.471 Sum_probs=312.8
Q ss_pred cchhhhhhhhhcccccccccCCCCCcccccccccccceEEEEeeeeeecccCCCCCccccccCc----------------
Q psy8372 262 SLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNK---------------- 325 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~~~~~P~el~~~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~---------------- 325 (883)
+...|...+....+..+...- .-+.+.+.+++.+++||.+.++.+++.+...+|+.+++...
T Consensus 127 ~Mvkf~~~is~ESiV~v~g~v--~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~ 204 (533)
T KOG0556|consen 127 QMVKFAGSISKESIVDVRGVV--VKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLA 204 (533)
T ss_pred HHHHHHhhcCcceEEEEEEEE--ecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccc
Confidence 444566555555444433221 12556678899999999999999999999999998876532
Q ss_pred -cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-CCCCCccceeccCCCCceeeEecC
Q psy8372 326 -AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQS 403 (883)
Q Consensus 326 -~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~~~ga~~f~v~~~~~~~~~~L~~S 403 (883)
.+.+|||+||.||||+|..+++|++++.|..++|+|| ..+||+||+||+|..+ ++|||+.|.|.|+ +...||+||
T Consensus 205 ~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~FRe~L-~~kgF~EIhTpKli~asSEGGanvF~v~Yf--k~~A~LAQS 281 (533)
T KOG0556|consen 205 RVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAFREYL-RSKGFVEIHTPKLIGASSEGGANVFRVSYF--KQKAYLAQS 281 (533)
T ss_pred eecccccccceeeecccccchheeehHHHHHHHHHHHH-HhcCcceecccccccccCCCCceeEEEEec--cCcchhhcC
Confidence 2568999999999999999999999999999999999 6899999999999876 5788999999987 567899999
Q ss_pred HHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHHHHHHHHHHHHHhccCCCCceeeehHHH
Q psy8372 404 PQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLNIPTRTFSRISYNDA 481 (883)
Q Consensus 404 pql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dvm~~~E~li~~i~~~~~~~f~rity~ea 481 (883)
|||||||+++++++|||+|||+||+|+++|.|| .||+.||+||+|-. |+|||+++.+++..|++.+.. .|.+
T Consensus 282 PQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~e-----ry~~- 355 (533)
T KOG0556|consen 282 PQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRE-----RYAK- 355 (533)
T ss_pred hHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Confidence 999999999999999999999999999999999 99999999999975 999999999999999988754 3333
Q ss_pred HHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCC
Q psy8372 482 ISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPR 561 (883)
Q Consensus 482 ~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (883)
+|.. +..+ ||.+ .|+
T Consensus 356 ---------------Eie~-Vr~q------yp~e----------------~fk--------------------------- 370 (533)
T KOG0556|consen 356 ---------------EIET-VRKQ------YPFE----------------PFK--------------------------- 370 (533)
T ss_pred ---------------HHHH-Hhhc------CCCc----------------ccc---------------------------
Confidence 4444 5444 4431 011
Q ss_pred CCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHH
Q psy8372 562 SVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNL 641 (883)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (883)
++... ++ +
T Consensus 371 ---------------f~~~~-----------lr---------------------------l------------------- 378 (533)
T KOG0556|consen 371 ---------------FLEPP-----------LR---------------------------L------------------- 378 (533)
T ss_pred ---------------cCCCc-----------eE---------------------------e-------------------
Confidence 11000 00 1
Q ss_pred HHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCC
Q psy8372 642 AKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLP 721 (883)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~ 721 (883)
...+..+++...|.+.||.-.++ ...++.||.|..+.+
T Consensus 379 -----------------------------~~~e~v~mLreaGvE~g~~dDls----Te~Ek~LG~lV~eky--------- 416 (533)
T KOG0556|consen 379 -----------------------------TFKEGVAMLREAGVEMGDEDDLS----TESEKKLGQLVREKY--------- 416 (533)
T ss_pred -----------------------------ehHHHHHHHHHcCcccCCccccC----ChhHHHHHHHHHHHh---------
Confidence 11122344455667777765443 356789999988766
Q ss_pred cccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHH
Q psy8372 722 LEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSEL 800 (883)
Q Consensus 722 ~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~ 800 (883)
+-+|+.+-+||+. .+|| |||+|+|+.+ +++||+++.|.||.+|.||||||+.
T Consensus 417 -------~tdfyildkyP~a-----------vRPFYTmpd~~~p~y---------SnSyD~fmRGeEIlSGAQRIhdpe~ 469 (533)
T KOG0556|consen 417 -------DTDFYILDKYPLA-----------VRPFYTMPDPENPRY---------SNSYDFFMRGEEILSGAQRIHDPEL 469 (533)
T ss_pred -------CCcEEEEccCccc-----------cccccccCCCCCCCc---------ccchhheechhhhhccccccCCHHH
Confidence 1257788889997 7999 9999999876 4899999999999999999999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 801 QESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 801 q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+.++++.+|+++...+.|+++|+||||||||+||||||+||+++|+.|||...+|||+++
T Consensus 470 L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPk 529 (533)
T KOG0556|consen 470 LVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPK 529 (533)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999865
No 21
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=3.9e-67 Score=607.19 Aligned_cols=327 Identities=21% Similarity=0.326 Sum_probs=257.9
Q ss_pred ccceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 296 LLSKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
.+++||.++++++++++. .++|+..+ ....+.+| +|||||+|++.++++|++||+|.+++|+|| +++||+||+||
T Consensus 185 ~g~iEl~v~~i~VLg~a~~~p~Pi~~k--~~~~E~LR-~~RhLdLRt~~~~ailRiRS~i~~aiR~ff-~~~GFiEV~TP 260 (633)
T PLN02532 185 KHVIELEVEKILHIGTVDPEKYPLSKK--RLPLDMLR-DFSHFRPRTTTVASVTRVRSALTHATHTFF-QDHGFLYVQVP 260 (633)
T ss_pred CCcEEEEeeEEEEEecCCCCCCccccc--cCCHHHHh-hCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEeeCC
Confidence 568999999999999973 35665443 23445555 999999999999999999999999999999 68999999999
Q ss_pred eeccCCCCCCcc-ceecc--------------------------------------------------------------
Q psy8372 375 TLFKRTPGGARE-FVVPT-------------------------------------------------------------- 391 (883)
Q Consensus 375 ~l~~~~~~ga~~-f~v~~-------------------------------------------------------------- 391 (883)
+|++++|+||++ |.|..
T Consensus 261 iLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (633)
T PLN02532 261 IITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQL 340 (633)
T ss_pred eecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 999999988876 54431
Q ss_pred -------------------------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 392 -------------------------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 392 -------------------------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
..+++.+||+||||||||++ +++++|||+||||||||+++|+|| +||||||+|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~-~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~E 419 (633)
T PLN02532 341 ASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY-ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVE 419 (633)
T ss_pred cccccccccccccccccccccccccccCCCCeeeccCHHHHHHHH-HHhcCceEEEccceecCCCCCCcccccccceeee
Confidence 12367899999999999985 579999999999999999998777 999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 446 LSFTTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 446 ~~~~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
|+|.|++|+|+++|+||+++++.+. .||+||||.||++.+..
T Consensus 420 maf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~----------- 488 (633)
T PLN02532 420 MAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQ----------- 488 (633)
T ss_pred ehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHH-----------
Confidence 9999999999999999999887532 24444444444443211
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
T Consensus 489 -------------------------------------------------------------------------------- 488 (633)
T PLN02532 489 -------------------------------------------------------------------------------- 488 (633)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
..+.+ .+.
T Consensus 489 ------------------------------------------------------------------~~~~~------~e~ 496 (633)
T PLN02532 489 ------------------------------------------------------------------ATDKK------FET 496 (633)
T ss_pred ------------------------------------------------------------------hcCCC------ccc
Confidence 00000 000
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEec
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDF 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~df 738 (883)
..+|..+| ....++.|++ + .+..| +||+||
T Consensus 497 ~~~~g~dL------------------------------~~e~Er~L~~---~------------~~~~P-----vFVtdy 526 (633)
T PLN02532 497 KPEWGIAL------------------------------TTEHLSYLAD---E------------IYKKP-----VIIYNY 526 (633)
T ss_pred ccccCCcc------------------------------ChHHHHHHHH---H------------HcCCC-----EEEECC
Confidence 00011100 0111222221 1 12334 899999
Q ss_pred CCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHH
Q psy8372 739 PLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQH 817 (883)
Q Consensus 739 Pl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~ 817 (883)
|.. ..||+|...+|..+ +++|||+++|+ ||+|||+|+|+++.+.++++..|++++.|+|
T Consensus 527 P~~-----------ikPFY~~~~~d~~~---------v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ew 586 (633)
T PLN02532 527 PKE-----------LKPFYVRLNDDGKT---------VAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEW 586 (633)
T ss_pred Chh-----------hchhhCCcCCCCCc---------eEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHH
Confidence 997 79999876655443 48999999975 9999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||++++||+|||||||||||||+|+|||++||||||+|||+..
T Consensus 587 YLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g 629 (633)
T PLN02532 587 YLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWG 629 (633)
T ss_pred HHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcC
Confidence 9999999999999999999999999999999999999999864
No 22
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=6.8e-66 Score=598.69 Aligned_cols=349 Identities=21% Similarity=0.387 Sum_probs=275.0
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
....+++++.++++++++++..++|... +..+.++|+++|||||| ++..+++|++||+|+++||+|| +++||+||
T Consensus 200 ~t~~gel~i~~~~i~llsk~l~~lP~~~---g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff-~~rGFlEV 275 (585)
T PTZ00417 200 KSKKGELSIFPKETIILSPCLHMLPMKY---GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFL-NDRGFIEV 275 (585)
T ss_pred CCCCceEEEEEEEEEEEecCCCCCCccc---CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCeEEE
Confidence 3445789999999999999988999763 34578999999999999 7899999999999999999999 78999999
Q ss_pred cCCeeccCCCCCCc--cceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGAR--EFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga~--~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+|+.. +|||. +|.++++..+..+||++|||+|+|+++++|++||||||||||||+++++|+|||||||+|++|+
T Consensus 276 eTPiL~~~-~GGA~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 276 ETPTMNLV-AGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYA 354 (585)
T ss_pred eCCeeecc-CCcccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecC
Confidence 99999764 77775 5877666667889999999999999999999999999999999999998889999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~~~ 506 (883)
|++|+|+++|+||++++.. +..||+|+||.||++.| |.+.+. .
T Consensus 355 dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~-------------~- 420 (585)
T PTZ00417 355 DFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQ-------------P- 420 (585)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccc-------------c-
Confidence 9999999999999998753 22467777777777775 321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
+.
T Consensus 421 --------------------------~~---------------------------------------------------- 422 (585)
T PTZ00417 421 --------------------------FD---------------------------------------------------- 422 (585)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.....+++.+++++
T Consensus 423 --------------------------------------------~~~~~~el~~~l~~---------------------- 436 (585)
T PTZ00417 423 --------------------------------------------SPETINKMINLIKE---------------------- 436 (585)
T ss_pred --------------------------------------------ccCCHHHHHHHHHH----------------------
Confidence 00012223333332
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS 746 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~ 746 (883)
.|++..+ . ...|.+..+++ +..+++.+.+ .++||+|||..
T Consensus 437 ---------------~g~~~~~------~------~~~~~~l~~l~----e~~vE~~l~~----~PtFI~dyP~~----- 476 (585)
T PTZ00417 437 ---------------NKIEMPN------P------PTAAKLLDQLA----SHFIENKYPN----KPFFIIEHPQI----- 476 (585)
T ss_pred ---------------cCCCCCC------C------CCHHHHHHHHH----HHHHHHhhCC----CcEEEECCChh-----
Confidence 1221100 0 01233333333 2344555543 24899999987
Q ss_pred CCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCcccH---HH
Q psy8372 747 GTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSSL---QH 817 (883)
Q Consensus 747 ~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~~---~~ 817 (883)
..||++.+++|+.+ +++|||+++|.||++|++|+|||.+|+++|+. .| +++.+ ++
T Consensus 477 ------~sPLak~~~~dp~v---------~eRFELfi~G~EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Ded 540 (585)
T PTZ00417 477 ------MSPLAKYHRSKPGL---------TERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAA 540 (585)
T ss_pred ------hCchhhhcCCCCCe---------EEeEEeEECCEEEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHH
Confidence 79999888877665 49999999999999999999999999998832 24 44443 45
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||+|++||||||||+|||||||+|+|||++||||||+||+++.
T Consensus 541 fl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 541 FCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 9999999999999999999999999999999999999999864
No 23
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=9.2e-66 Score=593.57 Aligned_cols=350 Identities=22% Similarity=0.307 Sum_probs=259.9
Q ss_pred ccceEEEE-----eeeeeecccCC--CCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCe
Q psy8372 296 LLSKEVIA-----SNITVLNKADV--NIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDF 368 (883)
Q Consensus 296 ~~~iEI~~-----e~i~vl~k~~~--~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF 368 (883)
.+++|+.+ .++++++.+.. ++|+..+ . ...++++++||||+|++.++++|++||.|..++|+|| .++||
T Consensus 159 ~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k--~-~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff-~~~gF 234 (586)
T PTZ00425 159 KENVELALKDNSIHNFEIYGENLDPQKYPLSKK--N-HGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFF-QSRGF 234 (586)
T ss_pred CccEEEEEecCCCceEEEEeccCCCCCCCCCCc--c-CChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHH-HHCCC
Confidence 35689987 79999998743 4565433 2 3456666899999999999999999999999999999 78999
Q ss_pred EEEcCCeeccCCCCCCcc-ceeccC-------------------------------------------------------
Q psy8372 369 VEVETPTLFKRTPGGARE-FVVPTH------------------------------------------------------- 392 (883)
Q Consensus 369 ~EV~TP~l~~~~~~ga~~-f~v~~~------------------------------------------------------- 392 (883)
+||+||+|++++|+||++ |.|+..
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999988 998532
Q ss_pred ------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 393 ------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 393 ------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
.+++.+||+||||||+|+ |++|++|||+||||||+|+++++|| +||||||+||+|+|++++|+++|+||+++
T Consensus 315 ~~~~~~yF~k~ayL~~S~QLylE~-~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v 393 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQLSLEN-LCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYC 393 (586)
T ss_pred ccccccccCcceEEEcCchHHHHH-HHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 224778999999999997 5688999999999999999999888 89999999999999999999999999999
Q ss_pred hccC-CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC--CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q psy8372 466 LNIP-TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ--PPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWG 542 (883)
Q Consensus 466 ~~~~-~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (883)
++.+ +..+..|+|- +... ...+.+.+... .+|++ +
T Consensus 394 ~~~vl~~~~~~i~~~------~~~~-----~~~l~~~l~~~~~~pf~r----------------------I--------- 431 (586)
T PTZ00425 394 IGYVLNNNFDDIYYF------EENV-----ETGLISRLKNILDEDFAK----------------------I--------- 431 (586)
T ss_pred HHHHhcccccccccc------cccc-----cccHHHHHHHhcCCCCCc----------------------C---------
Confidence 9863 3334444331 1100 00111111111 11211 0
Q ss_pred ccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeee
Q psy8372 543 ALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRIL 622 (883)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (883)
T Consensus 432 -------------------------------------------------------------------------------- 431 (586)
T PTZ00425 432 -------------------------------------------------------------------------------- 431 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHh
Q psy8372 623 ILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLS 702 (883)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~ 702 (883)
..+++.++++... .. .+ ...+-|+.+ .....+
T Consensus 432 -----------ty~EAi~iL~~~~-~~------~~------------------------~~~~~G~dL------~~e~Er 463 (586)
T PTZ00425 432 -----------TYTNVIDLLQPYS-DS------FE------------------------VPVKWGMDL------QSEHER 463 (586)
T ss_pred -----------CHHHHHHHHHHhH-Hh------cC------------------------CCCCccccc------chHHHH
Confidence 0011111111100 00 00 000111110 011222
Q ss_pred HHHHHHHHhhhhcccccCCccc-CCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEE
Q psy8372 703 LLGMIRSESHKIKVKNTLPLEF-DNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDL 781 (883)
Q Consensus 703 ~lg~lr~~~~~~~~~~~l~~~l-~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dl 781 (883)
.|+. .+ .. ++||||||.. ..||++...+|..+ +.+|||
T Consensus 464 ~L~~----------------~~~~~-----PvFItdyP~~-----------~kPFY~~~~~d~~~---------v~~fDL 502 (586)
T PTZ00425 464 FVAE----------------QIFKK-----PVIVYNYPKD-----------LKAFYMKLNEDQKT---------VAAMDV 502 (586)
T ss_pred HHHH----------------HhcCC-----cEEEECCccc-----------cCccccCcCCCCCe---------EEEEeE
Confidence 2221 11 22 4999999987 79998855444333 389999
Q ss_pred EecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 782 VLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 782 v~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
+++|+ ||+|||+|+|+++.+.++++..|++++.|+|||++++||+|||||||||||||+|+|||++|||||++|||+.+
T Consensus 503 lvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g 582 (586)
T PTZ00425 503 LVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPG 582 (586)
T ss_pred EccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCC
Confidence 99984 99999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q psy8372 861 G 861 (883)
Q Consensus 861 ~ 861 (883)
-
T Consensus 583 ~ 583 (586)
T PTZ00425 583 H 583 (586)
T ss_pred c
Confidence 3
No 24
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=7.4e-65 Score=581.96 Aligned_cols=349 Identities=22% Similarity=0.348 Sum_probs=263.3
Q ss_pred ceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++|+.++++++++++. .++|++.++ ...++++++||||+|++.+++++++||.|++++|+|| +++||+||+||+|
T Consensus 88 ~~El~~~~i~vl~~~~~~~~P~~~~~---~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~-~~~gf~eV~TP~l 163 (453)
T TIGR00457 88 PVELQVKKIEVVGEAEPDDYPLQKKE---HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYF-QENGFTWVSPPIL 163 (453)
T ss_pred CEEEEEeEEEEEecCCccCCCCCccc---cChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEecCCeE
Confidence 5789999999999996 578887654 3567788999999999999999999999999999999 6899999999999
Q ss_pred ccCCCCCCc-cceeccC-------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccccc
Q psy8372 377 FKRTPGGAR-EFVVPTH-------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELS 447 (883)
Q Consensus 377 ~~~~~~ga~-~f~v~~~-------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~ 447 (883)
+.++++|+. .|.++.. ..+..+||+||||+|||++ ++|++|||||+||||+|+++++|| |||||||+||+
T Consensus 164 ~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~ 242 (453)
T TIGR00457 164 TSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMA 242 (453)
T ss_pred eecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeee
Confidence 988777665 5988721 2478889999999999975 689999999999999999998666 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC--CCCCCCCCCCCCCCCCCCCC
Q psy8372 448 FTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ--PPWPSGYPTRLPRRAGEPGF 525 (883)
Q Consensus 448 ~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~ 525 (883)
|+|++|+|+++|+||+++++.+.. ++.+.++.++.+.+ .+ ....+.+. .+|
T Consensus 243 ~~~~~dvm~~~E~lv~~i~~~~~~-----~~~~~~~~~~~~~~---~~--~~~~l~~~~~~~~----------------- 295 (453)
T TIGR00457 243 FANLNDLLQLAETLIKYIIKAVLE-----NCSQELKFLEKNFD---KD--LIKRLENIINNKF----------------- 295 (453)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHhhccCC---ch--HHHHHHHhcCCCC-----------------
Confidence 999999999999999999987533 24444555443221 11 00000000 000
Q ss_pred CCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccc
Q psy8372 526 DSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFR 605 (883)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (883)
T Consensus 296 -------------------------------------------------------------------------------- 295 (453)
T TIGR00457 296 -------------------------------------------------------------------------------- 295 (453)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCC
Q psy8372 606 SNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLE 685 (883)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (883)
.+...+++.+++++.... ++....|
T Consensus 296 -------------------------~rit~~ea~~~l~~~~~~-------~~~~~~~----------------------- 320 (453)
T TIGR00457 296 -------------------------ARITYTDAIEILKESDKN-------FEYEDFW----------------------- 320 (453)
T ss_pred -------------------------ceeEHHHHHHHHHhcCCC-------CcCCCCC-----------------------
Confidence 011112222222221000 0000001
Q ss_pred CCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChh
Q psy8372 686 EGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 686 ~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~ 765 (883)
|+.+ ....++.|++ . .+.+ ++||||||.. ..||++...+|..
T Consensus 321 -g~~l------~~~~e~~L~~-----------~----~~~~-----p~fIt~~P~~-----------~~pfy~~~~~~~~ 362 (453)
T TIGR00457 321 -GDDL------QTEHERFLAE-----------E----YFKP-----PVFVTNYPKD-----------IKAFYMKLNDDGK 362 (453)
T ss_pred -CCCC------CcHHHHHHHH-----------H----hCCC-----CEEEECCCcc-----------cChhhcccCCCcC
Confidence 1100 0112222221 1 1223 4999999987 7999764435544
Q ss_pred hhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHh
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILC 844 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~ 844 (883)
+ +++|||+++|+ ||+|||+|+|+++.+.++++..|++++.|+|||+|++||+|||||||||||||+|+|+
T Consensus 363 ~---------~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~ 433 (453)
T TIGR00457 363 T---------VAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYIT 433 (453)
T ss_pred c---------eeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHh
Confidence 4 48999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q psy8372 845 GTQSIRDVIAFPKGFG 860 (883)
Q Consensus 845 ~~~sIRdvi~FPk~~~ 860 (883)
|++|||||++|||+.+
T Consensus 434 g~~~Irdv~~FPr~~~ 449 (453)
T TIGR00457 434 GLENIRDAIPFPRTPG 449 (453)
T ss_pred CCCcHhhhccCcCCCC
Confidence 9999999999999865
No 25
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.1e-64 Score=586.55 Aligned_cols=353 Identities=23% Similarity=0.299 Sum_probs=265.2
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+.+|+.++++++++++..++|+..+. .+ .+.+..++|||+|++.+++++++||+|++++|+|| .++||+||+||+
T Consensus 177 ~~~~EL~v~~i~vlg~a~~~~Pi~~~~--~s-~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff-~~~gF~eV~TPi 252 (565)
T PLN02603 177 KQKVELKVSKIVVVGKSDPSYPIQKKR--VS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF-QENGFVWVSSPI 252 (565)
T ss_pred CccEEEEEeEEEEEECCCCCCCCcccc--cc-hhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCe
Confidence 457999999999999997778876543 23 34444799999999999999999999999999999 789999999999
Q ss_pred eccCCCCCCcc-ceeccC----------------------------CCCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 376 LFKRTPGGARE-FVVPTH----------------------------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~----------------------------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
|++++||||++ |.|++. .+++.+||++|||||||+ ++++++|||+|||||
T Consensus 253 Lt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~-~~~~l~rVy~igp~F 331 (565)
T PLN02603 253 ITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGET-YATALSDVYTFGPTF 331 (565)
T ss_pred ecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHH-HHhcccceEEEecce
Confidence 99999999887 876421 135667999999999998 578999999999999
Q ss_pred ecCCCCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCC
Q psy8372 427 RDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQ 505 (883)
Q Consensus 427 R~E~~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~ 505 (883)
|+|+++|+|| +||||||+||+|+|++|+|+++|++|+++++.+.. ++.+-++..+... ...+.+.+.+.
T Consensus 332 RaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~-----~~~~el~~~~~~~-----~~~~~~~l~~~ 401 (565)
T PLN02603 332 RAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILE-----NCKEDMEFFNTWI-----EKGIIDRLSDV 401 (565)
T ss_pred eCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHc-----ccHhHHHhcCCcc-----cccHHHHHHHh
Confidence 9999998777 99999999999999999999999999999987543 2445454443311 11111101100
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchh
Q psy8372 506 --PPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQS 583 (883)
Q Consensus 506 --~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (883)
.+|+
T Consensus 402 ~~~~f~-------------------------------------------------------------------------- 407 (565)
T PLN02603 402 VEKNFV-------------------------------------------------------------------------- 407 (565)
T ss_pred cCCCCC--------------------------------------------------------------------------
Confidence 0010
Q ss_pred hhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccccc
Q psy8372 584 EICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWT 663 (883)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (883)
+...+++.+++++.... .+...+|.
T Consensus 408 ------------------------------------------------rity~EAi~iL~~~~~~-------~~~~~~~g 432 (565)
T PLN02603 408 ------------------------------------------------QLSYTDAIELLLKAKKK-------FEFPVKWG 432 (565)
T ss_pred ------------------------------------------------CCCHHHHHHHHHHhccc-------cCCCCCcc
Confidence 00112222222221000 00000121
Q ss_pred ccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCC
Q psy8372 664 NKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLP 743 (883)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~ 743 (883)
.+| ....++.|++ .+.+. +++||+|||..
T Consensus 433 ~dl------------------------------~~e~Er~L~~----------------~~~~~---~PvfVtdyP~~-- 461 (565)
T PLN02603 433 LDL------------------------------QSEHERYITE----------------EAFGG---RPVIIRDYPKE-- 461 (565)
T ss_pred ccc------------------------------cHHHHHHHHH----------------HhccC---CCEEEECCccc--
Confidence 111 0112222221 11100 34999999997
Q ss_pred CCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHh
Q psy8372 744 SDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAF 822 (883)
Q Consensus 744 ~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~ 822 (883)
..||+|+..+|..+ +++|||+++|+ ||+|||+|+|+++.+.++++..|+++++|+|||+++
T Consensus 462 ---------ikpFYm~~~~d~~~---------v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~ 523 (565)
T PLN02603 462 ---------IKAFYMRENDDGKT---------VAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLR 523 (565)
T ss_pred ---------cCccccccCCCCCe---------eEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 79999987665444 37999999986 999999999999999999999999999999999999
Q ss_pred hcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 823 KYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 823 ~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
+||+|||||||||||||+|+|+|++||||||+|||....
T Consensus 524 r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g~ 562 (565)
T PLN02603 524 RYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGS 562 (565)
T ss_pred hccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCCC
Confidence 999999999999999999999999999999999998654
No 26
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=2.8e-64 Score=582.97 Aligned_cols=329 Identities=22% Similarity=0.334 Sum_probs=259.5
Q ss_pred cceEEEEeeeeeecccC-CCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 297 LSKEVIASNITVLNKAD-VNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~-~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
+++|+.++++++++++. .++|+..+. .+.++++++|||++|++.++++|++||.|.+++|+|| .++||+||+||+
T Consensus 122 ~~iEl~v~~i~vl~~a~~~~~Pi~~~~---~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff-~~~gFiEI~TP~ 197 (572)
T PLN02221 122 QKIELSVEKVIDVGTVDPTKYPLPKTK---LTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFF-QEHSFLYIHTPI 197 (572)
T ss_pred ccEEEEEeEEEEEecCCCCCCCCCCCc---CChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCe
Confidence 47899999999999984 367765432 3466666999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceecc---------------------------------------------------------------
Q psy8372 376 LFKRTPGGARE-FVVPT--------------------------------------------------------------- 391 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~--------------------------------------------------------------- 391 (883)
|++++|+||++ |.|..
T Consensus 198 Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (572)
T PLN02221 198 ITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKES 277 (572)
T ss_pred eccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhh
Confidence 99999887765 87721
Q ss_pred -------------------------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 392 -------------------------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 392 -------------------------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
..+|+.+||+||||||||++ +++++|||+||||||||+++|+|| +||||+|+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~-~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~E 356 (572)
T PLN02221 278 LAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETY-ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPE 356 (572)
T ss_pred hhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHH-HHhcCCeEEEccceecCCCCCCcccccccceeee
Confidence 13478899999999999984 577999999999999999988777 999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 446 LSFTTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 446 ~~~~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
|+|.|++|+|+++|+||+++++.+. .||+||||.||++.+.....
T Consensus 357 maf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~-------- 428 (572)
T PLN02221 357 IAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVA-------- 428 (572)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhh--------
Confidence 9999999999999999999887522 25555555555554211000
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
. +.++
T Consensus 429 ------~----------------------------------------------------------g~~~----------- 433 (572)
T PLN02221 429 ------K----------------------------------------------------------GKEF----------- 433 (572)
T ss_pred ------c----------------------------------------------------------CCCC-----------
Confidence 0 0000
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
+.
T Consensus 434 ------------------------------------------------------------------------------~~ 435 (572)
T PLN02221 434 ------------------------------------------------------------------------------DN 435 (572)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcc-cCCCCCccEEEEEe
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE-FDNPKSFSIFWVVD 737 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~-l~~~~~~~f~wV~d 737 (883)
..+|..++ ....++.|+. . ..+ ++||+|
T Consensus 436 ~~~~G~dl------------------------------~~e~Er~L~~----------------~~~~~-----pvfv~d 464 (572)
T PLN02221 436 NVEWGIDL------------------------------ASEHERYLTE----------------VLFQK-----PLIVYN 464 (572)
T ss_pred Ccchhhhh------------------------------hHHHHHHHHH----------------HhcCC-----cEEEEc
Confidence 00011000 0011122221 1 122 389999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHH
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQ 816 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~ 816 (883)
||.. ..||+|+.++|..+ +.+|||+++|+ ||.||++|+|+++.+.++++..|++++.|+
T Consensus 465 yP~~-----------~~pfy~~~~~d~~~---------~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~ 524 (572)
T PLN02221 465 YPKG-----------IKAFYMRLNDDEKT---------VAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYE 524 (572)
T ss_pred CChh-----------hCcccccCCCCCce---------EEEEEEecCCceEECCHHHHHHHHHHHHHHHHHcCCChhhhH
Confidence 9987 79999876655443 37999999985 999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||+|++||+|||||||||||||+|+|+|++||||||+|||+.+-.
T Consensus 525 ~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~ 570 (572)
T PLN02221 525 WYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKA 570 (572)
T ss_pred HHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcC
Confidence 9999999999999999999999999999999999999999986543
No 27
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-64 Score=581.43 Aligned_cols=323 Identities=27% Similarity=0.419 Sum_probs=260.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+..+. ...++|+++||||+|++.++++|++||.|++++|+|| .++||+||+||+|+
T Consensus 86 ~~el~~~~i~vl~~~~~~~p~~~~~---~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~-~~~gf~EV~TP~L~ 161 (450)
T PRK03932 86 GYELQATKIEVIGEDPEDYPIQKKR---HSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFF-NENGFVWVDTPIIT 161 (450)
T ss_pred CEEEEEEEEEEccCCCCCCCCCccc---cChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEecCCcee
Confidence 6899999999999986788887654 3467888999999999999999999999999999999 68999999999999
Q ss_pred cCCCCCCc-cceecc-------CCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccC
Q psy8372 378 KRTPGGAR-EFVVPT-------HEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSF 448 (883)
Q Consensus 378 ~~~~~ga~-~f~v~~-------~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~ 448 (883)
+++++|+. .|.+++ ...+..+||+||||+|||++ ++|++|||||+||||||+++++|| |||||||+|++|
T Consensus 162 ~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~ 240 (450)
T PRK03932 162 ASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAF 240 (450)
T ss_pred ccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEec
Confidence 88876665 599854 23478899999999999985 689999999999999999987676 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCC---------------------------CCceeeehHHHHHHhCCCCCCccccchhhhh
Q psy8372 449 TTRDDVMRLIEELLCYCLNIPT---------------------------RTFSRISYNDAISLYGSDKPDLRYDCKIMIA 501 (883)
Q Consensus 449 ~~~~dvm~~~E~li~~i~~~~~---------------------------~~f~rity~ea~~~yg~~~~d~r~~~~~~~~ 501 (883)
.|++|+|+++|+||++++..+. .||+||||.||++.+....
T Consensus 241 ~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~------------ 308 (450)
T PRK03932 241 ADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSG------------ 308 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcC------------
Confidence 9999999999999999866422 3555555555555321100
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccc
Q psy8372 502 IKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTT 581 (883)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (883)
. .+.
T Consensus 309 ---~--------------------------~~~----------------------------------------------- 312 (450)
T PRK03932 309 ---K--------------------------KFE----------------------------------------------- 312 (450)
T ss_pred ---C--------------------------CcC-----------------------------------------------
Confidence 0 000
Q ss_pred hhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccc
Q psy8372 582 QSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLE 661 (883)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
....
T Consensus 313 ----------------------------------------------------------------------------~~~~ 316 (450)
T PRK03932 313 ----------------------------------------------------------------------------FPVE 316 (450)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0000
Q ss_pred ccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCC
Q psy8372 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741 (883)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~ 741 (883)
|...+ .......|+. +.+..| +||+|||..
T Consensus 317 ~g~~l------------------------------~~~~e~~l~~---------------~~~~~p-----vfI~~yP~~ 346 (450)
T PRK03932 317 WGDDL------------------------------GSEHERYLAE---------------EHFKKP-----VFVTNYPKD 346 (450)
T ss_pred ccccc------------------------------ChHHHHHHHH---------------HhcCCc-----EEEECCCcc
Confidence 00000 0001111111 023333 899999987
Q ss_pred CCCCCCCccccccCcC-CCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHH
Q psy8372 742 LPSDSGTLESAHHPFT-QPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMI 819 (883)
Q Consensus 742 ~~~~~~~~~~~h~PFt-~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l 819 (883)
..||+ ++++++ .+ +++|||++||+ ||.||++|+|+++.+.++++.+|++++.++||+
T Consensus 347 -----------~~pfy~~~~~~~-~~---------~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl 405 (450)
T PRK03932 347 -----------IKAFYMRLNPDG-KT---------VAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYL 405 (450)
T ss_pred -----------cCcccCcCCCCC-CE---------EEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence 79997 566666 54 58999999995 999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 820 QAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 820 ~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
++++||||||||||||||||+|+++|++|||||++|||+.+
T Consensus 406 ~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~ 446 (450)
T PRK03932 406 DLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPG 446 (450)
T ss_pred HHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCC
Confidence 99999999999999999999999999999999999999865
No 28
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.5e-62 Score=540.45 Aligned_cols=294 Identities=36% Similarity=0.610 Sum_probs=242.4
Q ss_pred cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCH
Q psy8372 326 AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 326 ~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Sp 404 (883)
.+.++|+++||||+|++..++++++|+.|.+++|+|| .++||+||+||+|+.+.+ +++..|.++++ ++.+||+|||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f-~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~--~~~~yL~~Sp 78 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFL-RENGFTEVHTPKITSTDTEGGAELFKVSYF--GKPAYLAQSP 78 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEeeCCceecCCCCccCCccccccC--CCcceecCCH
Confidence 3578899999999999999999999999999999999 689999999999988765 45667988765 6788999999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhcc--------------
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNI-------------- 468 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~-------------- 468 (883)
|+|||+++++ ++||||||||||+|++++.|| |||||||||++|+ |++|+|+++|+||++++..
T Consensus 79 ql~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 79 QLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 9999998777 999999999999999988655 9999999999999 9999999999999998852
Q ss_pred -------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy8372 469 -------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVW 541 (883)
Q Consensus 469 -------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (883)
+..||+||||.||++.+....+. . . + .|
T Consensus 158 ~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--------~----~---------------------------~------~~ 192 (322)
T cd00776 158 LNRELLKPLEPFPRITYDEAIELLREKGVE--------E----E---------------------------V------KW 192 (322)
T ss_pred cCcccccCCCCceEEEHHHHHHHHHHcCCC--------C----C---------------------------C------Cc
Confidence 23578888888888764221000 0 0 0 00
Q ss_pred cccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceee
Q psy8372 542 GALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRI 621 (883)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (883)
|.+
T Consensus 193 -------------------------------------------------------------------------~~~---- 195 (322)
T cd00776 193 -------------------------------------------------------------------------GED---- 195 (322)
T ss_pred -------------------------------------------------------------------------cch----
Confidence 000
Q ss_pred eecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhH
Q psy8372 622 LILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVL 701 (883)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 701 (883)
| .....
T Consensus 196 ----------------------------------------l----------------------------------~~~~e 201 (322)
T cd00776 196 ----------------------------------------L----------------------------------STEHE 201 (322)
T ss_pred ----------------------------------------h----------------------------------cHHHH
Confidence 0 00011
Q ss_pred hHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccceeeE
Q psy8372 702 SLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYD 780 (883)
Q Consensus 702 ~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~D 780 (883)
+.|+. .++ . .++||+|||.. ..|| ++++++++.+ +++||
T Consensus 202 ~~l~~------------~~~---~-----~p~fi~~~P~~-----------~~pfy~~~~~~~~~~---------~~~fd 241 (322)
T cd00776 202 RLLGE------------IVK---G-----DPVFVTDYPKE-----------IKPFYMKPDDDNPET---------VESFD 241 (322)
T ss_pred HHHHH------------HhC---C-----CcEEEECCccc-----------cCCceeeecCCCCCe---------eEEEE
Confidence 12221 110 2 34999999987 7899 5566665544 59999
Q ss_pred EEecC-eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 781 LVLNG-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 781 lv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
|+++| +||+|||+|+||+++|+++|+..|++++.++|||+|++||+|||||||||||||+|+++|++|||||++|||..
T Consensus 242 l~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~ 321 (322)
T cd00776 242 LLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDP 321 (322)
T ss_pred EEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999975
No 29
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.7e-62 Score=527.86 Aligned_cols=270 Identities=53% Similarity=0.917 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCccceeccCC-CCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~f~v~~~~-~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
+++||+|++++|+|| .++||+||+||+|++++++|+++|.+++.. .+.+++|+||||+|||+++++|++|||+|+|||
T Consensus 1 l~~Rs~i~~~iR~f~-~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFL-DEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHH-HHCCCEEEeCCeeecCCCCCCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 478999999999999 689999999999998888899889888763 466778999999999998999999999999999
Q ss_pred ecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhh
Q psy8372 427 RDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIA 501 (883)
Q Consensus 427 R~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~ 501 (883)
|+|+++++||+||||+|+|++|.|++|+|+++|+||++++.. ++.||+||||.||++.||.+
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~~~~------------- 146 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERYGFK------------- 146 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHhCCC-------------
Confidence 999999999999999999999999999999999999999863 45799999999999998732
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccc
Q psy8372 502 IKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTT 581 (883)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (883)
+.|..+||.
T Consensus 147 ----~~~~~d~~~------------------------------------------------------------------- 155 (280)
T cd00777 147 ----FLWIVDFPL------------------------------------------------------------------- 155 (280)
T ss_pred ----CccccCCcc-------------------------------------------------------------------
Confidence 112211110
Q ss_pred hhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccc
Q psy8372 582 QSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLE 661 (883)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
+ -|.
T Consensus 156 ----------------------------------------~-~~~----------------------------------- 159 (280)
T cd00777 156 ----------------------------------------F-EWD----------------------------------- 159 (280)
T ss_pred ----------------------------------------c-CCh-----------------------------------
Confidence 0 000
Q ss_pred ccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCC
Q psy8372 662 WTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLF 741 (883)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~ 741 (883)
++. +
T Consensus 160 ------------------------------------------~~~-----------~----------------------- 163 (280)
T cd00777 160 ------------------------------------------EEE-----------G----------------------- 163 (280)
T ss_pred ------------------------------------------hHH-----------H-----------------------
Confidence 000 0
Q ss_pred CCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCC----cccHHH
Q psy8372 742 LPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIE----TSSLQH 817 (883)
Q Consensus 742 ~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~----~~~~~~ 817 (883)
++...+|||+++.+.+..+...+|..-.+++|||+++|+||+|||+|+|||++|+++|+..|++ ++.++|
T Consensus 164 ------~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~ 237 (280)
T cd00777 164 ------RLVSAHHPFTAPKEEDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGF 237 (280)
T ss_pred ------HHHHHhCCCcCCCcccchhhhcCCccCeeEEEEEEeCCEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHH
Confidence 0001156776665554433333554344799999999999999999999999999999998988 456899
Q ss_pred HHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 818 MIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 818 ~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||+|++||+|||||||||||||+|+++|++|||||++|||+.+
T Consensus 238 yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 238 LLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred HHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999999999999999999999863
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=1.1e-60 Score=529.18 Aligned_cols=293 Identities=27% Similarity=0.377 Sum_probs=235.1
Q ss_pred cchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCcc-----c---eeccCCCCce
Q psy8372 326 AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGARE-----F---VVPTHEPNKF 397 (883)
Q Consensus 326 ~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~-----f---~v~~~~~~~~ 397 (883)
...++|++||++++|++.++++|++||.|++++|+|| .++||+||+||+|++++++|+.. | .+.+ .++.
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff-~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~ 84 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFL-DGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDF--YGVE 84 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCeEecCCCCCCCccccCCcccccccc--CCCc
Confidence 3578899999999999999999999999999999999 68999999999999876543321 3 3333 4788
Q ss_pred eeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHHHhcc------
Q psy8372 398 YSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI------ 468 (883)
Q Consensus 398 ~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~------ 468 (883)
+||+||||+|||++ ++|++||||||||||||++++ +|+|||||||||++|.|++|+|+++|+||++++..
T Consensus 85 ~yL~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~ 163 (335)
T PRK06462 85 YYLADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHE 163 (335)
T ss_pred eeeccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999975 567999999999999999998 66699999999999999999999999999999853
Q ss_pred ------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q psy8372 469 ------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGS 536 (883)
Q Consensus 469 ------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 536 (883)
++.||+||||.||++.+.....+ ..
T Consensus 164 ~~i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~-----------------------------------------~~-- 200 (335)
T PRK06462 164 DELEFFGRDLPHLKRPFKRITHKEAVEILNEEGCR-----------------------------------------GI-- 200 (335)
T ss_pred HHHHhcCCccccCCCCCeEEEHHHHHHHHHhcCCC-----------------------------------------cc--
Confidence 23567777777776642110000 00
Q ss_pred ccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCc
Q psy8372 537 VLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGE 616 (883)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (883)
T Consensus 201 -------------------------------------------------------------------------------- 200 (335)
T PRK06462 201 -------------------------------------------------------------------------------- 200 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCC
Q psy8372 617 DVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGK 696 (883)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 696 (883)
..+.+
T Consensus 201 --------------~~~~l------------------------------------------------------------- 205 (335)
T PRK06462 201 --------------DLEEL------------------------------------------------------------- 205 (335)
T ss_pred --------------hHHHH-------------------------------------------------------------
Confidence 00000
Q ss_pred chhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC-CCCChhhhccCCCCcc
Q psy8372 697 QEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP-HPEDEHLLSSNPLEVR 775 (883)
Q Consensus 697 ~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p-~~~d~~~~~~~~~~~~ 775 (883)
....++.|+. .+.+| +||+|||.. ..||++. ++++..+
T Consensus 206 ~~~~E~~l~~----------------~~~~p-----~fi~~yP~~-----------~~pfy~~~~~~~~~~--------- 244 (335)
T PRK06462 206 GSEGEKSLSE----------------HFEEP-----FWIIDIPKG-----------SREFYDREDPERPGV--------- 244 (335)
T ss_pred hHHHHHHHHH----------------HhCCC-----EEEECCChh-----------hCCcccccCCCCCCE---------
Confidence 0001112221 22333 899999986 6899764 4555443
Q ss_pred ceeeEEEec--CeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccc
Q psy8372 776 GLHYDLVLN--GNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853 (883)
Q Consensus 776 ~~~~Dlv~~--G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi 853 (883)
+++|||+++ +.||+||++|+|+++.+.++++.+|++++.++|||+|++||+|||||||||||||+|+++|++|||||+
T Consensus 245 ~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~ 324 (335)
T PRK06462 245 LRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQ 324 (335)
T ss_pred EEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheee
Confidence 589999994 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8372 854 AFPKGFGG 861 (883)
Q Consensus 854 ~FPk~~~~ 861 (883)
+|||...-
T Consensus 325 ~FPr~~g~ 332 (335)
T PRK06462 325 PFPRVPGI 332 (335)
T ss_pred eccCCCCC
Confidence 99998653
No 31
>KOG1885|consensus
Probab=100.00 E-value=6.1e-61 Score=518.09 Aligned_cols=374 Identities=26% Similarity=0.459 Sum_probs=278.9
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccC-hhhhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEV 371 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~-~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV 371 (883)
.+..+++.|.+.++.+|++|+.++|-. ..+..+.|+|+++||||+.. +..+.+|++|++|+..||.|| +++||+||
T Consensus 171 rt~~gELSi~~~~~~lLspcLh~lP~~--~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfl-d~rgFlEV 247 (560)
T KOG1885|consen 171 RTKSGELSIIPNEIILLSPCLHMLPHE--HFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFL-DSRGFLEV 247 (560)
T ss_pred cCCCceEEEeecchheecchhccCChh--hcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hhcCceEe
Confidence 455668999999999999999999922 23456789999999999995 789999999999999999999 89999999
Q ss_pred cCCeeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 372 ETPTLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 372 ~TP~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+||+|. ..+||| ++|.+.++..+..+||+.+||||++++++||++|||+||+.||||+.+.+|+||||.||+||+|+
T Consensus 248 ETPmmn-~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYa 326 (560)
T KOG1885|consen 248 ETPMMN-MIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYA 326 (560)
T ss_pred cchhhc-cccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHh
Confidence 999994 467886 47999998888889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRR 529 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 529 (883)
|++|+|+++|+|++.++..++..+ .|+| ..+.|+.+ ..++ | ++ +||.+
T Consensus 327 dy~dlm~~TE~l~s~mv~~i~G~~-~i~y-------~p~~~~~~-~~el-d-f~--~pfrr------------------- 374 (560)
T KOG1885|consen 327 DYEDLMDMTEELLSGMVKNITGSY-KITY-------HPNGPEEP-ELEL-D-FT--RPFRR------------------- 374 (560)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCce-eEee-------cCCCCCCC-ceee-e-cc--CCeee-------------------
Confidence 999999999999999998755422 1222 11222111 0000 0 10 11111
Q ss_pred CCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcc
Q psy8372 530 GPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRS 609 (883)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (883)
+. +|. .+.+.+
T Consensus 375 --------------i~-----mi~-----------------------~L~k~l--------------------------- 385 (560)
T KOG1885|consen 375 --------------IE-----MIE-----------------------ELEKEL--------------------------- 385 (560)
T ss_pred --------------ee-----HHH-----------------------HHHHHh---------------------------
Confidence 00 000 000000
Q ss_pred cccCCCccceeeeecCCcccc-chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCc
Q psy8372 610 ETKSSGEDVYRILILPKDLDS-TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGD 688 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 688 (883)
| +.+|.+..+ +.+..+-|..+.++ .+++
T Consensus 386 -----g------i~l~~~~~l~~~e~~~~L~~~~~~-------------------------------------~~v~--- 414 (560)
T KOG1885|consen 386 -----G------IKLPPGSTLHTEETRELLKSLCVD-------------------------------------EAVE--- 414 (560)
T ss_pred -----C------CCCCCccccCchhhHHHHHHHHHh-------------------------------------cccC---
Confidence 0 111111111 11122222222221 1111
Q ss_pred EEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhc
Q psy8372 689 LIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLS 768 (883)
Q Consensus 689 ~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~ 768 (883)
+..+......|.+|.. ..||+.+.+| .||.|+|.. .+|.+++|.....++
T Consensus 415 -----~p~p~t~arlLdKLvg--------~flE~~cvnP-----TFi~~hP~i-----------mSPLAK~hrs~~glt- 464 (560)
T KOG1885|consen 415 -----CPPPRTTARLLDKLVG--------EFLEPTCVNP-----TFIIDHPQI-----------MSPLAKYHRSKAGLT- 464 (560)
T ss_pred -----CCCcccHHHHHHHHHh--------HhhccccCCC-----eeEcCCchh-----------cCccccccccccchh-
Confidence 1222233344554433 5567788887 799999987 899999999888774
Q ss_pred cCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC------CCCcc--cHHHHHHHhhcCCCCCcceeccHHHHH
Q psy8372 769 SNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL------NIETS--SLQHMIQAFKYGCPPHGGIALGIDRLM 840 (883)
Q Consensus 769 ~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~------~~~~~--~~~~~l~a~~~G~pPhgG~glGldRlv 840 (883)
++|+|+++|.||+|++.++|||..|+.+|++. |=|+. ..+.|+.|++||+||+||||+|||||+
T Consensus 465 --------eRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~ 536 (560)
T KOG1885|consen 465 --------ERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLV 536 (560)
T ss_pred --------hHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhh
Confidence 89999999999999999999999999999442 22322 257899999999999999999999999
Q ss_pred HHHhCCCCccccccCCCCCC
Q psy8372 841 SILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 841 m~l~~~~sIRdvi~FPk~~~ 860 (883)
|+||+..|||||++||-.+.
T Consensus 537 MllTds~~I~EVL~Fp~mkp 556 (560)
T KOG1885|consen 537 MLLTDSNNIREVLLFPAMKP 556 (560)
T ss_pred hhhcCCcchhheeeccccCh
Confidence 99999999999999997653
No 32
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.6e-59 Score=519.28 Aligned_cols=303 Identities=28% Similarity=0.432 Sum_probs=234.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC-CccceeccCCCCceeeEecCHHHHHHHHHccCCCcE
Q psy8372 341 FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG-AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY 419 (883)
Q Consensus 341 ~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g-a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rv 419 (883)
++.+++++++||.|++++|+|| .++||+||+||+|+++..++ +..|.+++...+..+||+||||+|+|+++++|++||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff-~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~v 79 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFL-DDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERV 79 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcE
Confidence 3678999999999999999999 68999999999997664332 456888655557888999999999999888999999
Q ss_pred EEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc---------------CCCCceeeehHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI---------------PTRTFSRISYNDAISL 484 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~---------------~~~~f~rity~ea~~~ 484 (883)
||||||||+|+++++|+|||||||||++|.+++|+|+++|++|+++++. .+.||+||||.||+++
T Consensus 80 f~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~ 159 (329)
T cd00775 80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEYGGKELDFTPPFKRVTMVDALKE 159 (329)
T ss_pred EEEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCCccccCCCCceEEEHHHHHHH
Confidence 9999999999998877799999999999999999999999999999852 2368999999999998
Q ss_pred h-CCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCC
Q psy8372 485 Y-GSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSV 563 (883)
Q Consensus 485 y-g~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (883)
| |.+.. . .+.. .
T Consensus 160 ~~g~~~~---------~-~~~~---------------------------~------------------------------ 172 (329)
T cd00775 160 KTGIDFP---------E-LDLE---------------------------Q------------------------------ 172 (329)
T ss_pred HhCCCcc---------c-cccc---------------------------C------------------------------
Confidence 7 43210 0 0000 0
Q ss_pred ccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHH
Q psy8372 564 GCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAK 643 (883)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (883)
+. +.++.+-+
T Consensus 173 -------------------------------------------------------------------~~---~~~~~~~~ 182 (329)
T cd00775 173 -------------------------------------------------------------------PE---ELAKLLAK 182 (329)
T ss_pred -------------------------------------------------------------------CH---HHHHHHHH
Confidence 00 00000000
Q ss_pred HhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcc
Q psy8372 644 KAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLE 723 (883)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~ 723 (883)
. .+.+.++ .......+..+- ++.+++.
T Consensus 183 ~-------------------------------------~~~~~~~--------~~~~~~~l~~l~--------~~~ve~~ 209 (329)
T cd00775 183 L-------------------------------------IKEKIEK--------PRTLGKLLDKLF--------EEFVEPT 209 (329)
T ss_pred H-------------------------------------cCCCCCC--------CCCHHHHHHHHH--------HHHhccc
Confidence 0 0000000 001112222221 1334444
Q ss_pred cCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHH
Q psy8372 724 FDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQES 803 (883)
Q Consensus 724 l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~ 803 (883)
+..| +||+|||.. ..||+++.++|+.+ +++|||+++|+||+||++|+||+++|++
T Consensus 210 ~~~p-----~fi~~yP~~-----------~~~f~~~~~~~~~~---------~~rfdl~~~G~Ei~~G~~el~d~~e~~~ 264 (329)
T cd00775 210 LIQP-----TFIIDHPVE-----------ISPLAKRHRSNPGL---------TERFELFICGKEIANAYTELNDPFDQRE 264 (329)
T ss_pred cCCC-----EEEECCChH-----------hCcCcCcCCCCCCe---------eEEEEeEECCEEEEcccchhCCHHHHHH
Confidence 5444 899999987 79999987777554 5999999999999999999999999999
Q ss_pred HHHh------CCCCccc--HHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 804 ILHF------LNIETSS--LQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 804 ~~~~------~~~~~~~--~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
+|+. .+.++.. ++|||+|++||+|||||||||+|||+|+++|++|||||++||+++
T Consensus 265 r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 265 RFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 9954 2565543 689999999999999999999999999999999999999999985
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=1.9e-59 Score=513.32 Aligned_cols=291 Identities=25% Similarity=0.387 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC--CCCCCccceeccCC---CCceeeEecCHHHHHHHHHccCCCcEEEE
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKR--TPGGAREFVVPTHE---PNKFYSLVQSPQQLKQLLMVGSVDRYFQI 422 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--~~~ga~~f~v~~~~---~~~~~~L~~Spql~kq~l~~~~~~rvf~I 422 (883)
|++|+.|++++|+|| .++||+||+||+|+++ +.+|++.|.+.++. .++..||+||||+|+|+++++|++|||||
T Consensus 1 l~~rs~i~~~ir~~f-~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 1 LRARARLLAAIRAFF-AERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred ChHHHHHHHHHHHHH-HHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 478999999999999 6899999999999876 34678889998753 35678999999999998889999999999
Q ss_pred eeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhh
Q psy8372 423 ARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAI 502 (883)
Q Consensus 423 ~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~ 502 (883)
|||||||+++.+|+|||||||+|++|.|++|+|+++|+||++++..++.||+||||.||+++|..-.+ ..
T Consensus 80 gp~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~~~~~~it~~ea~~~~~~~~~--------~~-- 149 (304)
T TIGR00462 80 CKVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAPWERLSYQEAFLRYAGIDP--------LT-- 149 (304)
T ss_pred cCceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcEEEEHHHHHHHHhCCCc--------cc--
Confidence 99999999987667999999999999999999999999999999888889999999999998633110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccch
Q psy8372 503 KEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQ 582 (883)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (883)
.
T Consensus 150 --~----------------------------------------------------------------------------- 150 (304)
T TIGR00462 150 --A----------------------------------------------------------------------------- 150 (304)
T ss_pred --C-----------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccc
Q psy8372 583 SEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEW 662 (883)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (883)
..+++.+++++.. . .
T Consensus 151 ---------------------------------------------------~~~~~~~~~~~~g-~------~------- 165 (304)
T TIGR00462 151 ---------------------------------------------------SLDELAAAAAAHG-V------R------- 165 (304)
T ss_pred ---------------------------------------------------CHHHHHHHHHHcC-C------C-------
Confidence 0011111222100 0 0
Q ss_pred cccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCC
Q psy8372 663 TNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFL 742 (883)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~ 742 (883)
+..++ +......+.++++ +++.+... .++||+|||..
T Consensus 166 ---------------------~~~~~------d~~~~~e~~l~~~------------ie~~~~~~---~p~fi~~yP~~- 202 (304)
T TIGR00462 166 ---------------------ASEED------DRDDLLDLLFSEK------------VEPHLGFG---RPTFLYDYPAS- 202 (304)
T ss_pred ---------------------CCCCC------ChhHHHHHHHHHH------------HHHhcCCC---CCEEEEcCccc-
Confidence 00000 0001122333332 22222110 35999999987
Q ss_pred CCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCCCcccH
Q psy8372 743 PSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNIETSSL 815 (883)
Q Consensus 743 ~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~~~~~~ 815 (883)
..||++++++|+.+ +++|||+++|+||+||++|+||+++|+++|+. .|+++..+
T Consensus 203 ----------~~~~~~~~~~~~~~---------~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~ 263 (304)
T TIGR00462 203 ----------QAALARISPDDPRV---------AERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPL 263 (304)
T ss_pred ----------cCcCccccCCCCCe---------eEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 68999988777654 58999999999999999999999999999955 78888887
Q ss_pred -HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccC
Q psy8372 816 -QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAF 855 (883)
Q Consensus 816 -~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~F 855 (883)
+|||+|++||+|||||||||||||+|+++|++||||||+|
T Consensus 264 d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 264 DERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred hHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 6899999999999999999999999999999999999998
No 34
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=6.6e-59 Score=499.84 Aligned_cols=262 Identities=35% Similarity=0.617 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeece
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCY 426 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~F 426 (883)
+++||.|++++|+|| .++||+||+||+|+++.+ +|+..|.++++..|..+||+||||+|+|++++++++|||+|+|||
T Consensus 1 ~~~rs~i~~~ir~~f-~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~f 79 (269)
T cd00669 1 FKVRSKIIKAIRDFM-DDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNF 79 (269)
T ss_pred CcHHHHHHHHHHHHH-HHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecce
Confidence 478999999999999 689999999999987655 566679998776688999999999999998889999999999999
Q ss_pred ecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCC
Q psy8372 427 RDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQP 506 (883)
Q Consensus 427 R~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~ 506 (883)
|+|..+.+|++||||+|+|++|.|++|+|+++|+||+++++.+... +...+ +. ...+ ++ .
T Consensus 80 R~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~-----~~~~~---~~---------~~~~-~~--~ 139 (269)
T cd00669 80 RNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGV-----TAVTY---GF---------ELED-FG--L 139 (269)
T ss_pred eCCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcc-----ccccc---cc---------cccc-cC--C
Confidence 9997777777999999999999999999999999999997653210 00000 00 0000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhh
Q psy8372 507 PWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEIC 586 (883)
Q Consensus 507 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (883)
+ |
T Consensus 140 ~-------------------------~----------------------------------------------------- 141 (269)
T cd00669 140 P-------------------------F----------------------------------------------------- 141 (269)
T ss_pred C-------------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred ccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccc
Q psy8372 587 SRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKL 666 (883)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (883)
.+...+
T Consensus 142 --------------------------------------------~rit~~------------------------------ 147 (269)
T cd00669 142 --------------------------------------------PRLTYR------------------------------ 147 (269)
T ss_pred --------------------------------------------eEeeHH------------------------------
Confidence 000000
Q ss_pred cccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC
Q psy8372 667 TKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS 746 (883)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~ 746 (883)
+.++ .+. +++||+|||..
T Consensus 148 ---------------------------------------------------ea~~-~~~-----~p~fi~d~P~~----- 165 (269)
T cd00669 148 ---------------------------------------------------EALE-RYG-----QPLFLTDYPAE----- 165 (269)
T ss_pred ---------------------------------------------------HHHH-HhC-----CceEEECCCcc-----
Confidence 0000 011 34899999986
Q ss_pred CCccccccCc-CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc----cHHHHHHH
Q psy8372 747 GTLESAHHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS----SLQHMIQA 821 (883)
Q Consensus 747 ~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~----~~~~~l~a 821 (883)
.+|| +++.++++.+ +++|||+++|+||+|||+|+||+++|+++|+..+++++ .++|||+|
T Consensus 166 ------~~~fy~~~~~~~~~~---------~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a 230 (269)
T cd00669 166 ------MHSPLASPHDVNPEI---------ADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230 (269)
T ss_pred ------cCCCCCCcCCCCCCe---------EEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHH
Confidence 3555 7776666544 59999999999999999999999999999999999998 89999999
Q ss_pred hhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 822 FKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 822 ~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
++||+|||||||||||||+|+++|++|||||++|||+.
T Consensus 231 ~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 231 LEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred HHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999999999999999999985
No 35
>KOG0554|consensus
Probab=100.00 E-value=5.1e-56 Score=473.52 Aligned_cols=327 Identities=29% Similarity=0.434 Sum_probs=261.1
Q ss_pred ccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcC
Q psy8372 294 WGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVET 373 (883)
Q Consensus 294 ~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~T 373 (883)
...+++|+.++++.+++....+||...+ ..+.+.+| +.-||+.|+....+++|+||.+..+++.|| ++++|++|+|
T Consensus 81 ~~~q~iel~~eki~~vG~v~~~ypl~Kk--~lt~e~LR-~~~HLR~Rt~~~~av~RvRs~~~~a~h~ff-q~~~F~~i~t 156 (446)
T KOG0554|consen 81 GAKQQIELNAEKIKVVGTVDESYPLQKK--KLTPEMLR-DKLHLRSRTAKVGAVLRVRSALAFATHSFF-QSHDFTYINT 156 (446)
T ss_pred chheeeeeeeeEEEEEeecCCCCCCccc--cCCHHHHh-hcccccchhhHHHHHHHHHHHHHHHHHHHH-HHcCceEecC
Confidence 3567899999999999999777776543 34556666 899999999999999999999999999999 7999999999
Q ss_pred CeeccCCCCCCcc-ceeccC------CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceeccccc
Q psy8372 374 PTLFKRTPGGARE-FVVPTH------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIE 445 (883)
Q Consensus 374 P~l~~~~~~ga~~-f~v~~~------~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e 445 (883)
|+|+.++|+||++ |.|... .+|++.||+.|.||+++. |++++.|||.+||+||+|++++.|| .||||+|.|
T Consensus 157 PiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE 235 (446)
T KOG0554|consen 157 PIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAE 235 (446)
T ss_pred cEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceecccCCchhHHhhhhhhhhH
Confidence 9999999999987 877432 358889999999999995 7899999999999999999999998 999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHHHhccC---------------------------CCCceeeehHHHHHHhCCCCCCccccch
Q psy8372 446 LSFTT-RDDVMRLIEELLCYCLNIP---------------------------TRTFSRISYNDAISLYGSDKPDLRYDCK 497 (883)
Q Consensus 446 ~~~~~-~~dvm~~~E~li~~i~~~~---------------------------~~~f~rity~ea~~~yg~~~~d~r~~~~ 497 (883)
++|++ ++|.|+++|++++++++.+ +.+|.||||.||++.
T Consensus 236 ~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~------------- 302 (446)
T KOG0554|consen 236 LAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIEL------------- 302 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHH-------------
Confidence 99999 9999999999999998652 112223333333332
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccc
Q psy8372 498 IMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSC 577 (883)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (883)
T Consensus 303 -------------------------------------------------------------------------------- 302 (446)
T KOG0554|consen 303 -------------------------------------------------------------------------------- 302 (446)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEec
Q psy8372 578 LHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQ 657 (883)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (883)
++++.+. +.+
T Consensus 303 ----------------------------------------------------------------L~~a~t~------~fk 312 (446)
T KOG0554|consen 303 ----------------------------------------------------------------LQKAVTK------KFK 312 (446)
T ss_pred ----------------------------------------------------------------HHHhccc------ccc
Confidence 1111000 000
Q ss_pred CcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe
Q psy8372 658 DSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737 (883)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d 737 (883)
...+|..+|++ ..+..| -.+ .... +++|+|
T Consensus 313 ~~~kwG~~l~~------------------------------ehe~yL---~~~------------~~~~-----PVfV~d 342 (446)
T KOG0554|consen 313 TPPKWGIDLST------------------------------EHEKYL---VEE------------CFKK-----PVFVTD 342 (446)
T ss_pred cCcccccccch------------------------------hhHHHH---HHH------------hcCC-----CEEEEe
Confidence 00113222110 011111 111 1223 499999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHH
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQ 816 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~ 816 (883)
||.- ..||+|...+|.+.. .+|||+++|+ |++|||+|+.+ .++++..|+.+++++
T Consensus 343 YP~~-----------iKpFYMr~n~~~~tV---------aa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~e 398 (446)
T KOG0554|consen 343 YPKG-----------IKPFYMRLNDDGKTV---------AAFDLLVPGVGELIGGSLREER----KARLKERGLTREELE 398 (446)
T ss_pred cccc-----------ccceEEEecCCCCee---------EEEEeecccchhhcCcccchhh----HHHHHhcCCCccccc
Confidence 9997 899999887775532 7999999997 99999999999 778899999999999
Q ss_pred HHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 817 HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 817 ~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||+.+|||.+||||||||+||++.+++|.+||||||+|||.....
T Consensus 399 WYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~ 444 (446)
T KOG0554|consen 399 WYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSA 444 (446)
T ss_pred eehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccc
Confidence 9999999999999999999999999999999999999999986554
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=3.7e-54 Score=471.99 Aligned_cols=291 Identities=24% Similarity=0.382 Sum_probs=224.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCC--ccceeccC----CCCceeeEecCHHHHHHHHHccCCCc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA--REFVVPTH----EPNKFYSLVQSPQQLKQLLMVGSVDR 418 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga--~~f~v~~~----~~~~~~~L~~Spql~kq~l~~~~~~r 418 (883)
..+|++|+.|++++|+|| .++||+||+||+|+....+|+ .+|.+.++ ..++.+||+||||+++|++++++++|
T Consensus 2 ~~~l~~r~~i~~~ir~~f-~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~r 80 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFF-ADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80 (306)
T ss_pred hHHHHHHHHHHHHHHHHH-HHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccc
Confidence 478999999999999999 689999999999976655554 34777655 34688899999999999888889999
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchh
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKI 498 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~ 498 (883)
||+||||||+|++.++|++||||||||++|.|++|+|+++|+||++++.. .||++|||.||+++|....+
T Consensus 81 vf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--~~~~~i~~~eaf~~~~g~~~-------- 150 (306)
T PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--EPAESLSYQQAFLRYLGIDP-------- 150 (306)
T ss_pred eEEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc--CCceEEEHHHHHHHHhCCCC--------
Confidence 99999999999996666699999999999999999999999999999976 68999999999998732111
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhccccc
Q psy8372 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCL 578 (883)
Q Consensus 499 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (883)
+. .
T Consensus 151 ---~~-~------------------------------------------------------------------------- 153 (306)
T PRK09350 151 ---LS-A------------------------------------------------------------------------- 153 (306)
T ss_pred ---Cc-C-------------------------------------------------------------------------
Confidence 00 0
Q ss_pred ccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecC
Q psy8372 579 HTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQD 658 (883)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
+ .+++++.+++ .|
T Consensus 154 ----------------------------------------------------~---~~~~~~~~~~-~g----------- 166 (306)
T PRK09350 154 ----------------------------------------------------D---KTQLREVAAK-LG----------- 166 (306)
T ss_pred ----------------------------------------------------C---HHHHHHHHHH-cC-----------
Confidence 0 0011111111 00
Q ss_pred cccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEec
Q psy8372 659 SLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDF 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~df 738 (883)
. +|.. . ..+.-.+.+..+-. ..+|+.+... .++||+||
T Consensus 167 -------------------------~--~~~~--~--~~~~~~~~~~~l~~--------~~ve~~l~~~---~p~fi~~y 204 (306)
T PRK09350 167 -------------------------L--SNIA--D--EEEDRDTLLQLLFT--------FGVEPNIGKE---KPTFVYHF 204 (306)
T ss_pred -------------------------C--CCcC--C--CCCCHHHHHHHHHH--------HHHHHhcCCC---CCEEEEcC
Confidence 0 0000 0 00011112222221 2223333221 35999999
Q ss_pred CCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCCC
Q psy8372 739 PLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNIE 811 (883)
Q Consensus 739 Pl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~~ 811 (883)
|.. ..||++++++|+.+ +++|||+++|+||+||++|+||+++|+++|+. .|++
T Consensus 205 P~~-----------~~~~a~~~~~~~~~---------~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~ 264 (306)
T PRK09350 205 PAS-----------QAALAKISTEDHRV---------AERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLP 264 (306)
T ss_pred ccc-----------cCccccccCCCCCe---------eEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCC
Confidence 987 68999988877655 58999999999999999999999999999964 7888
Q ss_pred cccH-HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 812 TSSL-QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 812 ~~~~-~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
+..+ ++||+|++||+|||||+|||||||+|+++|++|||||
T Consensus 265 ~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 265 QQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred cccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 8888 5799999999999999999999999999999999997
No 37
>KOG0555|consensus
Probab=100.00 E-value=1e-51 Score=437.31 Aligned_cols=328 Identities=27% Similarity=0.427 Sum_probs=269.5
Q ss_pred cccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy8372 293 DWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVE 372 (883)
Q Consensus 293 ~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~ 372 (883)
+...+++|+.++-+++++.+... .+...-...++.+..|++|||-+|....++++++|+.+++++|++| .+.|++||.
T Consensus 189 K~apgghEl~vdy~Eiig~Apag-~~~n~lne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y-~~~~ytEVt 266 (545)
T KOG0555|consen 189 KSAPGGHELNVDYWEIIGLAPAG-GFDNPLNEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHY-FERGYTEVT 266 (545)
T ss_pred CCCCCCceEEeeeeeeecccCCC-cccccccccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHH-HhcCceecC
Confidence 44567899999999999998432 2222111245678889999999999999999999999999999999 789999999
Q ss_pred CCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC
Q psy8372 373 TPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT 450 (883)
Q Consensus 373 TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~ 450 (883)
+|+|++.. +||+..|+.+|. |+.+||+||+|||++.+ ...+++||+|+++||+|.++|+|| .||||+|+|++|.+
T Consensus 267 PPtmVQTQVEGGsTLFkldYy--GEeAyLTQSSQLYLEtc-lpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~aflt 343 (545)
T KOG0555|consen 267 PPTMVQTQVEGGSTLFKLDYY--GEEAYLTQSSQLYLETC-LPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLT 343 (545)
T ss_pred CCceEEEEecCcceEEeeccc--CchhhccchhHHHHHHh-hhhcCceeEecHhhhhhhhhhhhhhhhheeeeeeccccc
Confidence 99999985 788889999976 78889999999999975 577999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc-------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCC
Q psy8372 451 RDDVMRLIEELLCYCLNI-------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSG 511 (883)
Q Consensus 451 ~~dvm~~~E~li~~i~~~-------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~ 511 (883)
++++|+.+|+||+..+.. +++||+||.|+|||+.+... + +...
T Consensus 344 fd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~-----------~-vk~e------ 405 (545)
T KOG0555|consen 344 FDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEH-----------D-VKKE------ 405 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhc-----------C-CcCc------
Confidence 999999999999987654 56789999999999974321 1 1000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccc
Q psy8372 512 YPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFR 591 (883)
Q Consensus 512 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (883)
+ ++++
T Consensus 406 -----------------d----------------------------------g~~f------------------------ 410 (545)
T KOG0555|consen 406 -----------------D----------------------------------GTDF------------------------ 410 (545)
T ss_pred -----------------c----------------------------------Cccc------------------------
Confidence 0 1111
Q ss_pred eeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCC
Q psy8372 592 TTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILP 671 (883)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (883)
..|.|+ |
T Consensus 411 ---------------------efGdDI------~---------------------------------------------- 417 (545)
T KOG0555|consen 411 ---------------------EFGDDI------P---------------------------------------------- 417 (545)
T ss_pred ---------------------ccccch------h----------------------------------------------
Confidence 012221 0
Q ss_pred hhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccc
Q psy8372 672 DLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLES 751 (883)
Q Consensus 672 ~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~ 751 (883)
+.+++.+- + .+.. +++++.||..
T Consensus 418 --------------------------eAaER~mt------------d----tIg~-----PIfLtrFpve---------- 440 (545)
T KOG0555|consen 418 --------------------------EAAERKMT------------D----TIGV-----PIFLTRFPVE---------- 440 (545)
T ss_pred --------------------------hHHHHhhh------------h----hcCC-----ceEEeecccc----------
Confidence 00111000 1 1222 4899999997
Q ss_pred cccCcCCCC-CCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 752 AHHPFTQPH-PEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 752 ~h~PFt~p~-~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
|.+|+|+. .+|..++ ++.|++++|+ ||.|||+||.|.+++.+.|+.-|+|+..|-||++..+||.-||
T Consensus 441 -iKsFYM~rc~dd~~lT---------ESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pH 510 (545)
T KOG0555|consen 441 -IKSFYMKRCEDDPRLT---------ESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPH 510 (545)
T ss_pred -ccceeeecccCccccc---------eeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCC
Confidence 99998875 5666654 8999999997 9999999999999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHhCCCCccccccCCCC
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDVIAFPKG 858 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdvi~FPk~ 858 (883)
||.|||+||++||||+.-+||||.+|||-
T Consensus 511 GGyGLGlERfL~wL~~r~~vre~cLyPRf 539 (545)
T KOG0555|consen 511 GGYGLGLERFLAWLCDRYHVREVCLYPRF 539 (545)
T ss_pred CcccccHHHHHHHHhcccchhheeecchh
Confidence 99999999999999999999999999985
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-43 Score=363.74 Aligned_cols=294 Identities=26% Similarity=0.346 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCc--cceeccC----CCCceeeEecCHHHHHHHHHccCCCc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAR--EFVVPTH----EPNKFYSLVQSPQQLKQLLMVGSVDR 418 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~--~f~v~~~----~~~~~~~L~~Spql~kq~l~~~~~~r 418 (883)
...+..|+.|+++||.|| .++||+||+||.|+.+....+. .|.+.+. .+++..||++|||++.|.|+++|-.+
T Consensus 13 ~~~ll~Ra~i~~~iR~FF-~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFF-AERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCc
Confidence 456899999999999999 6899999999999776433332 3555433 34678999999999988889999999
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHh-CCCCCCccccch
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLY-GSDKPDLRYDCK 497 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~y-g~~~~d~r~~~~ 497 (883)
+|||++|||||+.+..|||||||||||.++.|+.-+|+.+.+|++.++.+. +++++||+||+.+| |.|..
T Consensus 92 ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~--~~E~ls~~eaF~r~~gid~l------- 162 (322)
T COG2269 92 IFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECV--EAERLSYQEAFLRYLGIDPL------- 162 (322)
T ss_pred chhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccC--CcceeeHHHHHHHHhCCCcc-------
Confidence 999999999999999999999999999999999999999999999999884 59999999999997 33210
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccc
Q psy8372 498 IMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSC 577 (883)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (883)
.
T Consensus 163 -----~-------------------------------------------------------------------------- 163 (322)
T COG2269 163 -----S-------------------------------------------------------------------------- 163 (322)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred cccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEec
Q psy8372 578 LHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQ 657 (883)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (883)
.....|.+.+++.
T Consensus 164 -------------------------------------------------------~~~~~L~~~~~~~------------ 176 (322)
T COG2269 164 -------------------------------------------------------ADKTELREAAAKL------------ 176 (322)
T ss_pred -------------------------------------------------------ccHHHHHHHHHhc------------
Confidence 0011122222210
Q ss_pred CcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEe
Q psy8372 658 DSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVD 737 (883)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~d 737 (883)
++. ....++-.+.+-.|. ...+|+++... ++++|.|
T Consensus 177 -------------------------~l~--------~~~~~~~d~L~~~lf--------~~~VEP~lg~~---rpt~ly~ 212 (322)
T COG2269 177 -------------------------GLS--------AATDEDWDTLLQLLF--------VEGVEPNLGKE---RPTFLYH 212 (322)
T ss_pred -------------------------CCC--------CCCccCHHHHHHHHH--------HhhcCcccCCC---CceEEEe
Confidence 000 000011111121111 24455555433 4589999
Q ss_pred cCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh-------CCC
Q psy8372 738 FPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF-------LNI 810 (883)
Q Consensus 738 fPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~-------~~~ 810 (883)
||.. .-..++++++|+.. +++|+|++.|+|++||+-++.|+.+|+++|+. .|+
T Consensus 213 fP~~-----------qaaLA~i~~~D~rV---------AERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l 272 (322)
T COG2269 213 FPAS-----------QAALAQISTGDPRV---------AERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGL 272 (322)
T ss_pred CcHH-----------HHHhhccCCCCcch---------hhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 9986 34577888888755 69999999999999999999999999999943 222
Q ss_pred Ccc-cHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 811 ETS-SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 811 ~~~-~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
+.- -.++||.|+.. |||.+|+|||+|||||+++|..+|-|||+||...
T Consensus 273 ~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 273 PQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred CCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 222 25799999999 9999999999999999999999999999999753
No 39
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.91 E-value=7.4e-25 Score=223.69 Aligned_cols=209 Identities=49% Similarity=0.804 Sum_probs=170.1
Q ss_pred hhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 82 ~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
...||+.+.+||+..+++.+++++||..++..|.+.++.||..+..... ......+.||.|||.|+.+..++...+.+|
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~V 81 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEV 81 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEE
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEe
Confidence 3579999999999999999999999999999999999999999865422 223467999999999999999988888899
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
..||+++..++.|++.......+..++++..++++.|.. ++||+|++.|++.|++|+++.++|+++...|+|+|.+++
T Consensus 82 DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~--~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 82 DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE--GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T--T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC--CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 999999999999998877645566789999999998765 699999999999999999999999999999999999999
Q ss_pred EecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCcccccc
Q psy8372 241 KDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWE 292 (883)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~~ 292 (883)
-++........++..+.+..|+...+.++|++||++++.++.+..+|.++++
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~p 211 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYP 211 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-E
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceE
Confidence 9999887767899999999999999999999999999999999999988763
No 40
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.74 E-value=5.7e-18 Score=179.27 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||||.++..++... .. +|+|+|+|+.|++.|+++.......+++++++|+++++..+ ++||+|+|.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--~sfD~v~~~ 123 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--NSFDAVTCS 123 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--T-EEEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--CceeEEEHH
Confidence 467899999999999998777653 32 89999999999999999998776668899999999988755 899999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------------------ccc---------CCcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------------------EYD---------DEDSSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------------------~~~---------~~~~~~~~s~ 263 (883)
..++++++ +.+.+++++|+|||||.+++.++....... .+. ...-....+.
T Consensus 124 fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~ 201 (233)
T PF01209_consen 124 FGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP 201 (233)
T ss_dssp S-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred hhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence 99999977 889999999999999999999877544210 000 0011122366
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
+++.++++++||+.+..+.
T Consensus 202 ~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 202 EELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 7899999999999876543
No 41
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=3.5e-17 Score=172.00 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
+..+.+.++..+.. .+|.+|||||||||.++..+++.... +|+|+|+|+.|++.|+++........++|+.+|+
T Consensus 36 ~~~Wr~~~i~~~~~-----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA 110 (238)
T COG2226 36 HRLWRRALISLLGI-----KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110 (238)
T ss_pred hHHHHHHHHHhhCC-----CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence 44555666666532 37899999999999999988776433 8999999999999999999986555589999999
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------------------ccC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------------------YDD 254 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------------------~~~ 254 (883)
+++++++ ++||+|.+...|+++++ +..+|++++|+|||||++++.+......... +..
T Consensus 111 e~LPf~D--~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~ 186 (238)
T COG2226 111 ENLPFPD--NSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVA 186 (238)
T ss_pred hhCCCCC--CccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeee
Confidence 9998766 89999999999999977 8899999999999999999998775433100 000
Q ss_pred Ccc----------cccccchhhhhhhhhccccccc
Q psy8372 255 EDS----------SVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 255 ~~~----------~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+. ....+.+++.+.+.++||+.+.
T Consensus 187 ~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 187 KDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred cChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 011 1113556888888888888776
No 42
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=1.8e-16 Score=171.08 Aligned_cols=146 Identities=20% Similarity=0.117 Sum_probs=112.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhh---ccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILK---DCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.|+++... ....+++++++|+.+++... ++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~--~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD--CYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC--CCEeEE
Confidence 46789999999999999877765 33 2799999999999999887542 12345688999998876544 689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------c-c-----------cCCc--------ccccc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------E-Y-----------DDED--------SSVVR 261 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~-~-----------~~~~--------~~~~~ 261 (883)
+++.++||+++ +..++++++|+|||||++++.++....... . + ...+ .....
T Consensus 150 ~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~ 227 (261)
T PLN02233 150 TMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYL 227 (261)
T ss_pred EEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcC
Confidence 99999999976 889999999999999999999877543210 0 0 0000 01234
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.+++.++++++||+.+....
T Consensus 228 s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 228 TGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEEE
Confidence 778999999999999886543
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=1.8e-15 Score=169.52 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++....+. ..++++.+|+.+++... ++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED--GQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC--CCccEEEECC
Confidence 46789999999999999988776444799999999999999998776543 45789999998876543 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---c--------c----CCcccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---Y--------D----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~--------~----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+++|+++ ...++++++++|||||.+++.++........ + . ......+.+..++..+++++||.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 9999976 7799999999999999999988654321100 0 0 00001123677999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 273 ~v~~~d 278 (340)
T PLN02244 273 DIKTED 278 (340)
T ss_pred eeEeee
Confidence 876543
No 44
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=1.2e-15 Score=168.52 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...++++++++.+++... ++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~--~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG--RKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc--CCCCEEEEhhH
Confidence 567999999999999987777655 59999999999999998765432 235688999988775433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---------cc---ccC--Ccccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------NE---YDD--EDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---------~~---~~~--~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..++++++++|||||.+++.+....... +. ... ..+....+++++..+++++||+++
T Consensus 208 LeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 208 IEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999977 78999999999999999999987643210 00 111 112224578899999999999998
Q ss_pred cccCC
Q psy8372 279 KSEKG 283 (883)
Q Consensus 279 ~~~~~ 283 (883)
...-.
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 76443
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=3.2e-15 Score=161.66 Aligned_cols=159 Identities=20% Similarity=0.307 Sum_probs=118.8
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.......++..+. ..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+...|+.
T Consensus 37 g~~~~~~~l~~l~-----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~ 109 (263)
T PTZ00098 37 GIEATTKILSDIE-----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDIL 109 (263)
T ss_pred chHHHHHHHHhCC-----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcc
Confidence 3445566666652 257789999999999999877665334799999999999999998653 345678888887
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---cc---CCcccccccchhhh
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---YD---DEDSSVVRSLPQFC 267 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~~---~~~~~~~~s~~~~~ 267 (883)
+.+... ++||+|++..+++|++.+++..++++++++|||||.+++.++........ +. ........+..++.
T Consensus 110 ~~~~~~--~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 110 KKDFPE--NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYG 187 (263)
T ss_pred cCCCCC--CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 654433 68999999999999976678999999999999999999998764432110 00 01111234677999
Q ss_pred hhhhhccccccccc
Q psy8372 268 LLFSKANLKCVKSE 281 (883)
Q Consensus 268 ~l~~~aGf~vv~~~ 281 (883)
.+++++||+.+...
T Consensus 188 ~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 188 DLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHCCCCeeeEE
Confidence 99999999987554
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=8.9e-15 Score=151.46 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++........+++...|+.++... ++||+|+|+.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD---GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC---CCcCEEEEecch
Confidence 457999999999999998888866 5999999999999999988776555567888888766442 479999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||+++++...++++++++|||||++++.......... . .....+..+..++...|+ ||+++....
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~-~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-C-TVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-C-CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 9998777899999999999999996654432221111 0 111223346667888886 788766543
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=3.4e-15 Score=147.90 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
..+++..+... ..++.+|||||||+|.++..+...+. +|+|+|+|+.+++. ........+......
T Consensus 9 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 9 YADLLERLLPR---LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHHTC---TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHhcc---cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhc
Confidence 34455555421 25678999999999999998877766 69999999999988 111223332222222
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC------cccccC--Ccccccccchhhhhh
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV------KNEYDD--EDSSVVRSLPQFCLL 269 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~------~~~~~~--~~~~~~~s~~~~~~l 269 (883)
.+++||+|+|+.+|+|+++ +..++++++++|||||++++.++..... ...+.. ..+..+.+..++..+
T Consensus 75 --~~~~fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (161)
T PF13489_consen 75 --PDGSFDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQL 150 (161)
T ss_dssp --HSSSEEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHH
T ss_pred --cccchhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHH
Confidence 2369999999999999976 8899999999999999999999875320 011111 134456688999999
Q ss_pred hhhccccccc
Q psy8372 270 FSKANLKCVK 279 (883)
Q Consensus 270 ~~~aGf~vv~ 279 (883)
++++||+++.
T Consensus 151 l~~~G~~iv~ 160 (161)
T PF13489_consen 151 LEQAGFEIVE 160 (161)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 9999999875
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=2e-14 Score=153.71 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=115.9
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEE
Q psy8372 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 129 ~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.....+|++|||||||+|.++.+++.....+|+|+++|+++.+.+++++...+.. ++++.-.|..++. +.||-|
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-----e~fDrI 141 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-----EPFDRI 141 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----ccccee
Confidence 3445789999999999999999888885346999999999999999998887654 5666666665543 469999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-ccc------CCcccccccchhhhhhhhhcccccccc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-EYD------DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-~~~------~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+|..+++|+..+....+++.++++|+|||.+++.+........ ... -..++...+.........++||.+...
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 9999999999888999999999999999999998876544222 000 122334445667777788888887654
Q ss_pred cC
Q psy8372 281 EK 282 (883)
Q Consensus 281 ~~ 282 (883)
+.
T Consensus 222 ~~ 223 (283)
T COG2230 222 ES 223 (283)
T ss_pred hh
Confidence 43
No 49
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=1.1e-14 Score=154.08 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... .. +|+|+|+|+.|++.|+++........++++.+|+.+++.. +++||+|++.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~ 121 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD--DNSFDYVTIG 121 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC--CCCccEEEEe
Confidence 467899999999999998777653 32 7999999999999999988765555678899998876543 3689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------cc---C-----------------Ccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------YD---D-----------------EDSSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------~~---~-----------------~~~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||.+++.+......... +. . .......+.
T Consensus 122 ~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T TIGR02752 122 FGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM 199 (231)
T ss_pred cccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCH
Confidence 99999976 7899999999999999999887654322100 00 0 001112356
Q ss_pred hhhhhhhhhcccccccccCC
Q psy8372 264 PQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++.++++++||+.+.....
T Consensus 200 ~~l~~~l~~aGf~~~~~~~~ 219 (231)
T TIGR02752 200 DELAEMFQEAGFKDVEVKSY 219 (231)
T ss_pred HHHHHHHHHcCCCeeEEEEc
Confidence 78899999999998765443
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.59 E-value=1.7e-14 Score=158.79 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+.+++...... ....+.+...++.+++.. .+||+|+|..
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcCEEEEcc
Confidence 457899999999999998888888778999999999998765432211 223456677787776543 3899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------ccC-CcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------YDD-EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------~~~-~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++ +..+|++++++|||||.|++.+....+.... +.. .+..+..+..++..+++++||+.+....
T Consensus 197 vL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 197 VLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred hhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 9999976 8899999999999999999987543322111 110 1112334677999999999999886543
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.59 E-value=1.5e-14 Score=156.66 Aligned_cols=190 Identities=17% Similarity=0.149 Sum_probs=115.0
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccch-HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDI-QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 161 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~-~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~ 161 (883)
..+|+.+.++|............+|-....... +...+.++.+. ......+|.+|||||||.|.++..++.+...+|+
T Consensus 11 ~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~-~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~ 89 (273)
T PF02353_consen 11 SAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLC-EKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVT 89 (273)
T ss_dssp HHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHH-TTTT--TT-EEEEES-TTSHHHHHHHHHH--EEE
T ss_pred HHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHH-HHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEE
Confidence 456776666666543332222222212122222 22333334433 3344578999999999999999999988333699
Q ss_pred EEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 162 LLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 162 gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
|+.+|+.+.+.|++++...+. ..+++...|..+++ .+||.|+|..+++|+..++...+++++.++|||||.+++
T Consensus 90 gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 90 GITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred EEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999987754 35677777776543 389999999999999877799999999999999999999
Q ss_pred EecccCCCcccc---------c--CCcccccccchhhhhhhhhcccccc
Q psy8372 241 KDNVASGVKNEY---------D--DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 241 ~~~~~~~~~~~~---------~--~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
............ . -..++...+..++...++++||++.
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~ 213 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVE 213 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEE
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEE
Confidence 876643321110 0 1122333455666667777777765
No 52
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.58 E-value=2.5e-15 Score=155.38 Aligned_cols=108 Identities=26% Similarity=0.301 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||||||-|.++..++..|+. |+|+|+|+.+++.|+.++.+.+.. +++.+..++++.... ++||+|+|..|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~--~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG--GQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC--CCccEEEEhhHH
Confidence 6889999999999999999999965 999999999999999998876544 356677777665443 699999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|+++ +..+++.+.+++||||.+++++.+.+.
T Consensus 135 EHv~d--p~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 135 EHVPD--PESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HccCC--HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99977 779999999999999999999987543
No 53
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=7.9e-15 Score=157.88 Aligned_cols=134 Identities=21% Similarity=0.296 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ .++++++|+.++.+ .++||+|+|+.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~fD~v~~~~ 97 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDTDVVVSNA 97 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCceEEEEeh
Confidence 46789999999999999988877433 799999999999999763 24788899887642 25899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-cc----------ccc----CC---cccccccchhhhhhhhhc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-KN----------EYD----DE---DSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-~~----------~~~----~~---~~~~~~s~~~~~~l~~~a 273 (883)
++||+++ +..++++++++|||||.+++..+..... .. .+. .. ......+..++.++++++
T Consensus 98 ~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 98 ALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred hhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence 9999976 7899999999999999999975431110 00 000 00 011223667888889999
Q ss_pred ccccc
Q psy8372 274 NLKCV 278 (883)
Q Consensus 274 Gf~vv 278 (883)
||.+.
T Consensus 176 Gf~v~ 180 (255)
T PRK14103 176 GCKVD 180 (255)
T ss_pred CCeEE
Confidence 98754
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.5e-14 Score=155.75 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++....+. .+++++++|+.++.+.. +++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-ETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-CCCCCEEEehh
Confidence 3567999999999999998888765 599999999999999998876543 45678888887764322 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------------cccc-----CCcccccccchhhhhhhhhc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------------NEYD-----DEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------------~~~~-----~~~~~~~~s~~~~~~l~~~a 273 (883)
+++|+.+ +..++++++++|||||++++...+..... ..+. ........+++++.++++++
T Consensus 121 vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 121 VLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred HHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 9999966 77999999999999999998765533210 0000 00011234567899999999
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
||+++.
T Consensus 199 Gf~~~~ 204 (255)
T PRK11036 199 GWQIMG 204 (255)
T ss_pred CCeEee
Confidence 999864
No 55
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=1.5e-14 Score=129.94 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=79.9
Q ss_pred EEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccCh
Q psy8372 139 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
||+|||+|..+..+++.+..+|+|+|+|+.+++.++++.... ...+...|+.+++... ++||+|++..+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~--~sfD~v~~~~~~~~~~- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD--NSFDVVFSNSVLHHLE- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T--T-EEEEEEESHGGGSS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc--ccccccccccceeecc-
Confidence 899999999999888884557999999999999999987643 2348999999986554 7999999999999994
Q ss_pred HHHHHHHHHHHHHhccCcEEEE
Q psy8372 219 EDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 219 ed~~~~l~~~~r~LKPGG~lvi 240 (883)
++..++++++|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 489999999999999999986
No 56
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.56 E-value=3.4e-14 Score=132.63 Aligned_cols=106 Identities=22% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccC-CCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~ 210 (883)
|+.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.|+++.... ...++++++.|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF---LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT---SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc---CCCCCEEEEC
Confidence 4679999999999999988883 3336999999999999999999433 456779999999 33332 2479999999
Q ss_pred c-cccccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 W-VLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~-vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. +++++.. ++...+++++++.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 6665543 568899999999999999999986
No 57
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=2.8e-14 Score=158.41 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=110.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||||||+|.++..++..++..|+|+|+|+.|+..++...... ...++.++.+++.+++. +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCCcCEEEECCh
Confidence 56799999999999999888888778999999999998765543222 13356888889888765 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cccCC-cccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDDE-DSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~~~-~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+.+ +..++++++++|+|||.+++.+....+... .+... ...+..+..++..+++++||+.+....
T Consensus 199 l~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 199 LYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 999966 889999999999999999998654332211 01111 112234778999999999999886643
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=8.5e-14 Score=143.92 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+.. +.+...|+..... +++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~---~~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL---NEDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc---cCCCCEEEEeccc
Confidence 456999999999999998888776 5999999999999999887655433 4566677654433 2589999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||++.++...++++++++|||||++++.+...... . .......+..+..++.++|. +|+++....
T Consensus 105 ~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~-~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 105 MFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-Y-PCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-C-CCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 99987778899999999999999977665432211 0 11112234456778888886 477765543
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.53 E-value=7.2e-14 Score=147.20 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=108.1
Q ss_pred eEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++....+ ...+++...|+...+. +++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehHHHHH
Confidence 799999999999988887753 379999999999999999887653 3456788888765432 25899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
|+++ ...++++++++|||||.+++.++...............+..+..+|.+++.++||+++....
T Consensus 79 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 79 HIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred hCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 9976 78999999999999999999886532211111111222344677999999999999875543
No 60
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=3.9e-14 Score=152.05 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+...+..+++.+.. .+..+|||+|||+|.++..+...+ .+|+|+|+|+.|++.|+++... ..++++|+
T Consensus 26 ~q~~~a~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----~~~~~~d~ 94 (251)
T PRK10258 26 LQRQSADALLAMLPQ-----RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----DHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHHhcCc-----cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----CCEEEcCc
Confidence 344455555555421 346799999999999998777665 4699999999999999887542 35788898
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.+++... ++||+|+++.+++++++ +..++.++.++|||||.++++++...
T Consensus 95 ~~~~~~~--~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 95 ESLPLAT--ATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ccCcCCC--CcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 8765443 68999999999999966 88999999999999999999986543
No 61
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=8.1e-14 Score=138.02 Aligned_cols=109 Identities=29% Similarity=0.328 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+.+|||+|||+|.++..++.. +. .+++|+|+|+.|++.|++++......++++.+.|+.+++.. .++.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEEc
Confidence 35779999999999999988843 33 37999999999999999998877666889999999996532 22589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ +..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999976 779999999999999999999876
No 62
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=9.3e-14 Score=148.94 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||||||+|..+..++.. .. .+|+|+|+|+.|++.|+++..... ...++++++|+.+++. ..+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEEe
Confidence 46789999999999998877663 22 279999999999999999987653 3357889999887643 2589999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++.++||+++++...++++++++|||||.+++.+..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999998777889999999999999999998854
No 63
>KOG1540|consensus
Probab=99.51 E-value=1e-13 Score=143.20 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=120.4
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-------CeEEEEeCCHHHHHHHHHHHhhcc---CCCccEE
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQSSKFIEQAKEEILKDC---DKLDKCY 188 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-------~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~ 188 (883)
.++...+......+..++++||++||||..+..++..-. .+|+++|+++.|+..+++++.+.. .....++
T Consensus 85 HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE
Confidence 344455554455556789999999999999988876521 379999999999999999986542 2336789
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---cccc------------
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---NEYD------------ 253 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---~~~~------------ 253 (883)
++|+++++++. ++||..++...+..+++ +.+.+++++|+|||||++.+.++...... ..++
T Consensus 165 ~~dAE~LpFdd--~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 165 EGDAEDLPFDD--DSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred eCCcccCCCCC--CcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhH
Confidence 99999998765 89999999999999977 88999999999999999999988765421 0000
Q ss_pred ------------CCcccccccchhhhhhhhhccccccc
Q psy8372 254 ------------DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 254 ------------~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+.-.-+.+.+++..+.++|||..+.
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 01111123566899999999999876
No 64
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=1.7e-13 Score=160.50 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ...+++..+|+.+.+... ++||+|+|..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-~~~v~~~~~d~~~~~~~~--~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-KCSVEFEVADCTKKTYPD--NSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-CCceEEEEcCcccCCCCC--CCEEEEEECCc
Confidence 467799999999999998777654347999999999999999876533 235688899988765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||.+++.++....... .+....+....+..++.++++++||+++..
T Consensus 342 l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 342 ILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 999976 789999999999999999999876432110 001111223446778999999999998744
No 65
>KOG1270|consensus
Probab=99.50 E-value=4.9e-14 Score=146.58 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc--CC----CccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--DK----LDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~--~~----~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++|||+|||+|.++..|+..|.. |+|+|+|+.|++.|+++..... .. ++++.+.++++.. +.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceee
Confidence 578999999999999999988866 9999999999999999844431 11 1234444444432 5799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------ccc-----CCcccccccchhhhhhhhhcc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYD-----DEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~-----~~~~~~~~s~~~~~~l~~~aG 274 (883)
|..+++|+.+ +..++..+.+.|||||.+++++.......+ ... ...+..+.++.+...++..++
T Consensus 164 csevleHV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 164 CSEVLEHVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred eHHHHHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9999999955 999999999999999999999987543211 000 122333457778888888888
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
+.+....-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 77665443
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.50 E-value=1.2e-13 Score=153.15 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=108.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++... ..+|+++|+|+.|++.|+++... .+++++.+|+.+.+... ++||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~--~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPT--DYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCC--CceeEEEEcC
Confidence 457899999999999988776653 24799999999999999987542 34578889988765433 6899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-ccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-NEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++ ...++++++++|||||.+++......... .......+....+.+++.++++++||+.+..+.
T Consensus 187 ~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999977 67899999999999999988764432211 001111112234678999999999999887654
No 67
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.50 E-value=1.3e-13 Score=147.00 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH---FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g---~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|+++..... ...++++++|+.+++. ..+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCEEe
Confidence 466799999999999998787753 2279999999999999999877543 3356889999987653 2589999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---c-------c---cCC-------------ccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---E-------Y---DDE-------------DSSVVRS 262 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~-------~---~~~-------------~~~~~~s 262 (883)
+..++||+++++...++++++++|||||.+++.+........ . + ... ......+
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 999999998877889999999999999999999865322110 0 0 000 0112346
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
.+++.++++++||..+..
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 779999999999986643
No 68
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=2.7e-13 Score=158.86 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.+++... ...++.+++.|+........+++||+|+++.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 46799999999999999887764 469999999999998865432 234567888888643222223689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|+++++...++++++++|||||++++.+.+...........+..++++...|.++|.++||.......
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCE
Confidence 999987788999999999999999999987644332333344667777888999999999999875544
No 69
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=3.1e-13 Score=138.01 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.++||+|||.|+.+.+|+.+|+. |+++|.|+.+++.+++.+...... ++..+.|+.+.... +.||+|++..++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~---~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP---EEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T---TTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc---CCcCEEEEEEEe
Confidence 4679999999999999999999997 999999999999998877765544 57788888877653 489999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+|++.+....+++.+...++|||++++.+....... -...+..+...+.++...+. |+++++
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~--p~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY--PCPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC--CCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 999988889999999999999999999776533221 11222333345566777665 455553
No 70
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.48 E-value=2.1e-13 Score=148.16 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.. +.. +|+|+|+|+.|++.|+++.......++++..+|+.+++... ++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~--~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD--NSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--CceeEEEEc
Confidence 57889999999999987755554 333 69999999999999999887665556788889988765433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-ccC------Ccccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YDD------EDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~~~------~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+++|.++ ...++++++++|||||++++.+......... ... .......+..++..+++++||..+...
T Consensus 154 ~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 154 CVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred CcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 99999976 6789999999999999999987654321100 000 000112356688999999999887543
No 71
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=6e-13 Score=145.82 Aligned_cols=138 Identities=21% Similarity=0.174 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++..|. +|+|+|+|+.|++.+++++..... .+++...|+..... +++||+|++..++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~~vl~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILSTVVLM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEcchhh
Confidence 45999999999999998888876 599999999999999998876654 45677777765443 36899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
|+++++...+++++.++|+|||++++......... .......+..+..++.+.++. |+++...
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~--~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY--PCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC--CCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 99877789999999999999999777553322111 111222344567788888865 7776543
No 72
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.47 E-value=6.3e-13 Score=139.12 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=101.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.||||+|||.|..+.+++.+|+. |+|+|+|+.+++.|.+..... ....++++++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 35679999999999999999999887 999999999999875432110 1234678999998876432
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.+.||.|+...+++|++.+....+++.+.++|||||++++......... .....+..+..++.++|..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----~~gpp~~~~~~eL~~~f~~ 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----MAGPPFSVSPAEVEALYGG 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----CCCcCCCCCHHHHHHHhcC
Confidence 2579999999999999988888999999999999998777765432211 1111234467788888864
No 73
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.3e-14 Score=132.94 Aligned_cols=98 Identities=24% Similarity=0.338 Sum_probs=65.3
Q ss_pred EEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccC
Q psy8372 139 LDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ 217 (883)
||||||+|.++..++..... +++|+|+|+.|++.|+++..............+..+.......++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999988888533 79999999999999998888765444445555555443333235999999999999994
Q ss_pred hHHHHHHHHHHHHHhccCcEE
Q psy8372 218 DEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 218 ded~~~~l~~~~r~LKPGG~l 238 (883)
+ +..++++++++|||||.|
T Consensus 81 ~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred h--HHHHHHHHHHHcCCCCCC
Confidence 4 889999999999999986
No 74
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=3.9e-13 Score=142.12 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
.+......++..+.... ...+.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++.. .++.++..|
T Consensus 15 ~q~~~~~~l~~~~~~~~--~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKG--IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhc--cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence 44445555555553211 123478999999999999988887654 68999999999999988765 245788899
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc--CCcccccccchhhhhh
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--DEDSSVVRSLPQFCLL 269 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~--~~~~~~~~s~~~~~~l 269 (883)
+.+.+... ++||+|++..++||+.+ +..++.++.++|+|||.+++.++.......... ......+.+..++.++
T Consensus 89 ~~~~~~~~--~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
T TIGR02072 89 AEKLPLED--SSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKAL 164 (240)
T ss_pred hhhCCCCC--CceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 88776433 68999999999999966 789999999999999999998765433211000 0011223345566666
Q ss_pred hhhccccc
Q psy8372 270 FSKANLKC 277 (883)
Q Consensus 270 ~~~aGf~v 277 (883)
+..+ |..
T Consensus 165 l~~~-f~~ 171 (240)
T TIGR02072 165 LKNS-FEL 171 (240)
T ss_pred HHHh-cCC
Confidence 6655 543
No 75
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=9.3e-13 Score=140.98 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=107.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||||||+|+.+..++.+|+..|+|+|+++...-+++....-.+.. .+..+-..+++++. . +.||+|+|..|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCEEEEeee
Confidence 67899999999999999999999999999999998877755432222222 22233346666655 2 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cccC-Ccccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYDD-EDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~~-~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
|.|..+ +...|..++..|+|||.+++.+..-.+... .+.. .+-.+..+...+..+++++||+.++.-
T Consensus 192 LYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 192 LYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred hhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999976 899999999999999999998876444322 1111 222345578899999999999987643
No 76
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=3.4e-13 Score=124.10 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=79.8
Q ss_pred EEEEcCCCChHHHHHHHhC---C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-cc
Q psy8372 138 VLDVGAGIGRISKYLLAKH---F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-WV 212 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g---~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~v 212 (883)
|||+|||+|..+..++... . .+++|+|+|+.|++.|+++...... .++++++|+.+++... ++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~--~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD--GKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS--SSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC--CCeeEEEEcCCc
Confidence 7999999999999888764 3 4899999999999999999876444 6689999999876433 699999995 55
Q ss_pred ccccChHHHHHHHHHHHHHhccCc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG 236 (883)
++|+++++...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999899999999999999998
No 77
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=2.7e-12 Score=134.42 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+.. +++++|+++.+++.++++.. ....+.+...|+.+.+... ++||+|+++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~--~~~D~i~~~ 113 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED--NSFDAVTIA 113 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC--CcEEEEEEe
Confidence 36789999999999999988887763 79999999999999998875 3345678888888765433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------------------cccc-CCc--------ccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------------------NEYD-DED--------SSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------------------~~~~-~~~--------~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||++++.+....... ..+. ..+ ...+.+.
T Consensus 114 ~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 114 FGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred eeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCH
Confidence 99999966 88999999999999999999876432210 0000 000 0123356
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.+|..++.++||+.+..+.
T Consensus 192 ~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHHHHHHHHcCCccceeee
Confidence 7899999999999876554
No 78
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=6.6e-13 Score=143.07 Aligned_cols=111 Identities=16% Similarity=0.320 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
....++..+. ..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++.. .+.+..+|+.++
T Consensus 19 ~~~~ll~~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~ 88 (258)
T PRK01683 19 PARDLLARVP-----LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASW 88 (258)
T ss_pred HHHHHHhhCC-----CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhcc
Confidence 3445555442 24678999999999999988887643 379999999999999998753 357888888766
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+. ++||+|+++.++||+++ ...++++++++|||||.+++..
T Consensus 89 ~~~---~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 89 QPP---QALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCC---CCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 432 48999999999999976 7799999999999999999975
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=1.9e-12 Score=136.19 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... ..+.+...|+.+.. ++||+|++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii~~~ 127 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVVCMD 127 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEEEhh
Confidence 3578999999999999998877654 699999999999999998875533 35678888887653 4899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-----ccccc---CCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-----KNEYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-----~~~~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|++.+++..+++++++++++++++.+........ ...+. ........+.+++.++++++||+++..+.
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 9999987778899999999998776665532211000 00011 11122345778999999999999997754
No 80
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.39 E-value=3.2e-12 Score=135.30 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=110.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+. .+++++|+++.+++.|+++..... ...+.+...|+.+.... .++||+|++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP--DNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC--CCCccEEEEe
Confidence 567999999999999998888774 489999999999999999876532 24567888888776543 3689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----------c-------ccCCc---------ccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------E-------YDDED---------SSVVRSL 263 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----------~-------~~~~~---------~~~~~s~ 263 (883)
.+++|+++ +..+++++.++|+|||.+++.+........ . +.... ...+.+.
T Consensus 129 ~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (239)
T PRK00216 129 FGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQ 206 (239)
T ss_pred cccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCH
Confidence 99999976 889999999999999999987764332210 0 00000 0122356
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.++.+++.++||+.+....
T Consensus 207 ~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 207 EELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHHHHhCCCceeeeee
Confidence 7899999999999887665
No 81
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=4.4e-12 Score=133.89 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... . .+++|+|+|+.+++.|+++.. ....++.+...|+...+... ++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPFPD--GSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCCCC--CCceEEEEe
Confidence 567899999999999998887764 2 379999999999999998833 23345678888887655433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ +..++++++++|||||.+++.++.
T Consensus 95 ~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 95 RVLQHLED--PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred chhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence 99999976 789999999999999999998864
No 82
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.38 E-value=5.7e-12 Score=132.37 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.||||+|||.|..+.+++.+|+. |+|||+|+.+++.|.+..... ....+++.++|+.++.+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 35679999999999999999998887 999999999999875422110 1234678889998876442
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.+.||+|+...+++|++.+....+++.+.++|+|||++++........ . . ....+..+.+++.++|..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~-~-~--~gPp~~~~~~el~~~~~~ 181 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE-E-L--AGPPFSVSDEEVEALYAG 181 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc-c-C--CCCCCCCCHHHHHHHhcC
Confidence 258999999999999998888999999999999999766544332211 0 1 111234467788888864
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=7.4e-12 Score=142.21 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++.... .+++...|..++ +++||+|++..+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-----~~~fD~Ivs~~~ 237 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-----NGQFDRIVSVGM 237 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc-----CCCCCEEEEeCc
Confidence 577899999999999998887764347999999999999999987522 246666666543 258999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++|+..+++..++++++++|||||.+++.+...
T Consensus 238 ~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 238 FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 999987778899999999999999999987643
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.38 E-value=4.9e-12 Score=133.61 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=102.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+.. |+|+|+|+.|++.|+++...... ..+.+..+|+.. . .++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L--LGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c--cCCcCEEEEcc
Confidence 45679999999999999988877664 99999999999999998775533 456778877432 1 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCC-----Cccccc---CCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKNEYD---DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~-----~~~~~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++|+++++...+++++.+.+++++.+.+....... ....+. ........+..++.+++.++||++...+.
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 999998877889999999877544443322110000 000111 11122334667899999999999887644
No 85
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.38 E-value=5.9e-12 Score=131.08 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++.. .+.+.++|+.+ +.. +++||+|+++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----~~~~~~~d~~~-~~~--~~sfD~V~~~~ 113 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----NINIIQGSLFD-PFK--DNFFDLVLTKG 113 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----CCcEEEeeccC-CCC--CCCEEEEEECC
Confidence 45679999999999999888776 23479999999999999988653 23677888776 322 36999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+++|++++++..+++++++++ ++++++.+....
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999998777899999999998 578888876543
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.38 E-value=4.5e-12 Score=140.21 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..+..+|||||||+|.++..+++..+. +++++|. +.+++.|++++...+ ..+++++.+|+.+... . .+|+|++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~---~~D~v~~ 221 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-P---EADAVLF 221 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-C---CCCEEEe
Confidence 356679999999999999988888765 7999997 799999999887664 3457889999875332 2 4799999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-cc-----------CCcccccccchhhhhhhhhccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-YD-----------DEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~~-----------~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
..++|+++++....++++++++|+|||++++.+......... +. ........+.++|.++++++||+.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~ 301 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD 301 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCe
Confidence 999999987767899999999999999999998754322110 00 000111223579999999999987
Q ss_pred cc
Q psy8372 278 VK 279 (883)
Q Consensus 278 v~ 279 (883)
+.
T Consensus 302 v~ 303 (306)
T TIGR02716 302 VT 303 (306)
T ss_pred eE
Confidence 64
No 87
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.37 E-value=5.1e-12 Score=133.00 Aligned_cols=150 Identities=22% Similarity=0.214 Sum_probs=112.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+.+|||+|||+|.++..++..+. .++++|+|+.+++.++++........+.+...++.++.... +++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhHH
Confidence 477999999999999987777665 49999999999999999877554334577788877665432 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------c---cc--CCcccccccchhhhhhhhhccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------E---YD--DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~---~~--~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+|+.+ +..+++.+.++|+|||.+++.+........ . .. ......+.+..++.++++++||+++.
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 99976 789999999999999999988754321000 0 00 11112234567899999999999987
Q ss_pred ccCCCCCc
Q psy8372 280 SEKGEFSP 287 (883)
Q Consensus 280 ~~~~~~~P 287 (883)
.......|
T Consensus 201 ~~~~~~~~ 208 (224)
T TIGR01983 201 VKGLVYNP 208 (224)
T ss_pred eeeEEeeh
Confidence 66544433
No 88
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=8.3e-12 Score=137.74 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...+.+...|+.++ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEEE
Confidence 467999999999999998888765 59999999999999999876531 22446777776543 25899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------ccccCC---cccccccchhhhhhhhhcccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------NEYDDE---DSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------~~~~~~---~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
|..+++|++++....+++.+.+ +.+||. ++......... ..+... ...++.+.+++.++++++||++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA 295 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence 9999999987666677777775 455555 44432111100 011111 11233467899999999999987
Q ss_pred ccc
Q psy8372 279 KSE 281 (883)
Q Consensus 279 ~~~ 281 (883)
..+
T Consensus 296 ~~~ 298 (315)
T PLN02585 296 RRE 298 (315)
T ss_pred EEE
Confidence 544
No 89
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.36 E-value=9.5e-12 Score=131.98 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=108.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. .++++|+++.+++.|+++...... .+.+...++.++.... .++||+|++..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH-PGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc-CCCccEEEEhhH
Confidence 4678999999999999987777654 599999999999999988765433 3467777776654222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------------c--cCCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------------Y--DDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------------~--~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..+++.+.++|+|||.+++..+........ . ....+..+.+..+|.+++.++||+++
T Consensus 124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999976 7789999999999999999987643221100 0 01112223466789999999999988
Q ss_pred ccc
Q psy8372 279 KSE 281 (883)
Q Consensus 279 ~~~ 281 (883)
...
T Consensus 202 ~~~ 204 (233)
T PRK05134 202 DIT 204 (233)
T ss_pred eee
Confidence 654
No 90
>KOG4300|consensus
Probab=99.36 E-value=3.4e-12 Score=128.05 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc-EEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK-CYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.....||+||||||..-.+.--.-..+|+++|+++.|-+.|.+.+.+.....+. |+.++..+++..+ ++++|.|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~-d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA-DGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc-cCCeeeEEEEE
Confidence 445678999999999887443223347999999999999999999887555554 8889988887433 58999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---ccc---CC-----cccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYD---DE-----DSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~~~---~~-----~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+|+.+.+ +.+.|+++.|+|+|||++++.+........ .++ +. .++.. -..+..++++++.|.....
T Consensus 154 vLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~-ltrd~~e~Leda~f~~~~~ 230 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV-LTRDTGELLEDAEFSIDSC 230 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE-EehhHHHHhhhcccccchh
Confidence 9999955 999999999999999999998876543221 111 11 11111 1235567888899988877
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
++..
T Consensus 231 kr~~ 234 (252)
T KOG4300|consen 231 KRFN 234 (252)
T ss_pred hccc
Confidence 6654
No 91
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.36 E-value=6.4e-12 Score=128.35 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=96.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.++++....+..+++++++|+.++.. .++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh-
Confidence 3779999999999999877765543 799999999999999998877655567899999988642 35899999976
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh---cccccccccCCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK---ANLKCVKSEKGEF 285 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~---aGf~vv~~~~~~~ 285 (883)
+++ +..+++.++++|+|||.+++..... ...++..+.++ .||+.+.......
T Consensus 118 ~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~----------------~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 118 LAS-----LNVLLELTLNLLKVGGYFLAYKGKK----------------YLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred hhC-----HHHHHHHHHHhcCCCCEEEEEcCCC----------------cHHHHHHHHHhhhhcCceEeeccccCC
Confidence 443 4467888999999999999875211 23344444444 7898887766544
No 92
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=1e-11 Score=127.39 Aligned_cols=139 Identities=22% Similarity=0.194 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
....+.+++.+..... .+++.+|||+|||+|..+..++.... .+|+|+|+|+.|++.|+++........++++.+|+.
T Consensus 27 ~~~~~~~~d~l~l~~~-l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~ 105 (187)
T PRK00107 27 ELWERHILDSLAIAPY-LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE 105 (187)
T ss_pred HHHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh
Confidence 3444455555533222 23478999999999999987776443 379999999999999999988876656899999998
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
++.. .++||+|+++.. .+ +..+++.++++|||||++++..... ....+..+.+..
T Consensus 106 ~~~~---~~~fDlV~~~~~----~~--~~~~l~~~~~~LkpGG~lv~~~~~~----------------~~~~l~~~~~~~ 160 (187)
T PRK00107 106 EFGQ---EEKFDVVTSRAV----AS--LSDLVELCLPLLKPGGRFLALKGRD----------------PEEEIAELPKAL 160 (187)
T ss_pred hCCC---CCCccEEEEccc----cC--HHHHHHHHHHhcCCCeEEEEEeCCC----------------hHHHHHHHHHhc
Confidence 8654 368999999752 22 6689999999999999999886321 233556666666
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
|+.+..
T Consensus 161 ~~~~~~ 166 (187)
T PRK00107 161 GGKVEE 166 (187)
T ss_pred CceEee
Confidence 776543
No 93
>PRK06202 hypothetical protein; Provisional
Probab=99.36 E-value=7.3e-12 Score=132.94 Aligned_cols=140 Identities=12% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++.... .+.+...+...++.. +++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~--~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAE--GERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccccccc--CCCccEE
Confidence 45679999999999998876642 433 7999999999999998875422 235556655555432 3689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------------cccCCcc----cccccchhhhhhh
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------EYDDEDS----SVVRSLPQFCLLF 270 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------------~~~~~~~----~~~~s~~~~~~l~ 270 (883)
+|+.++||+++++...++++++++++ |.+++.+...+...+ .+...+. ....+.+++.+++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999988777899999999998 677777765442111 0111111 1233677888888
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++ ||++...
T Consensus 212 ~~-Gf~~~~~ 220 (232)
T PRK06202 212 PQ-GWRVERQ 220 (232)
T ss_pred hC-CCeEEec
Confidence 88 8886644
No 94
>PRK05785 hypothetical protein; Provisional
Probab=99.36 E-value=6.6e-12 Score=132.81 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=92.5
Q ss_pred hHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEE
Q psy8372 83 RSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162 (883)
Q Consensus 83 ~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~g 162 (883)
+..|+..+..||..... .. + ..+....+.++..+... ..++.+|||||||||.++..++.....+|+|
T Consensus 12 ~~~f~~iA~~YD~~n~~----~s-~----g~~~~wr~~~~~~l~~~---~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~g 79 (226)
T PRK05785 12 QEAYNKIPKAYDRANRF----IS-F----NQDVRWRAELVKTILKY---CGRPKKVLDVAAGKGELSYHFKKVFKYYVVA 79 (226)
T ss_pred HHHHHhhhHHHHHhhhh----cc-C----CCcHHHHHHHHHHHHHh---cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEE
Confidence 45677777777753211 10 0 11223334444444221 1246799999999999998887774237999
Q ss_pred EeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccC
Q psy8372 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 163 vD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG 235 (883)
+|+|+.|++.|+++. .++++|+.+++..+ ++||+|++..++||+++ +..++++++|+|||.
T Consensus 80 vD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d--~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 80 LDYAENMLKMNLVAD--------DKVVGSFEALPFRD--KSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred ECCCHHHHHHHHhcc--------ceEEechhhCCCCC--CCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 999999999998642 35778888876544 79999999999999976 889999999999994
No 95
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=1.3e-12 Score=131.96 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
+.+.++++++.. .+..+|.|+|||+|..+..++.+.+. .++|+|.|++|++.|+.+..+ ++|..+|+.+
T Consensus 17 RPa~dLla~Vp~-----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----~~f~~aDl~~ 86 (257)
T COG4106 17 RPARDLLARVPL-----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-----ATFEEADLRT 86 (257)
T ss_pred CcHHHHHhhCCc-----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----CceecccHhh
Confidence 345667777643 35679999999999999877777655 899999999999999887653 4899999999
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+.. ..|+++++.+||++++ -..+|.++...|.|||.|.+.-+..
T Consensus 87 w~p~~---~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 87 WKPEQ---PTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cCCCC---ccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCc
Confidence 98766 8999999999999987 7799999999999999999987654
No 96
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.32 E-value=7.6e-12 Score=126.50 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
..-.++||+|||.|.++..|+.+ +.+++++|+|+.+++.|+++.... .++++.+.++.++.|. ++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~---~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPE---GRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S---S-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCC---CCeeEEEEehH
Confidence 34578999999999999977666 467999999999999999998853 5789999999876544 59999999999
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
++++.+ +++..++.++...|+|||.|++...... .-..+++....+....+|.+.
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------NCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------HHHHTT-S--HHHHHHHHHHH
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------cccccCcccchHHHHHHHHHH
Confidence 999976 6789999999999999999999874211 111233444455666666554
No 97
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.30 E-value=3.6e-11 Score=122.49 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++...... .++++.+|+.+.. .++||+|+++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV----RGKFDVILFNPPY 92 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc----CCcccEEEECCCC
Confidence 457899999999999998887776 799999999999999998875543 3577888876542 2489999999888
Q ss_pred cccChH-------------------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 214 MFILDE-------------------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 214 ~hl~de-------------------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++.++. ....++.++.++|||||.+++...... ...++...++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------~~~~~~~~l~~~g 157 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------GEPDTFDKLDERG 157 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------ChHHHHHHHHhCC
Confidence 776431 145789999999999999999874221 2567889999999
Q ss_pred cccccccCCCCC
Q psy8372 275 LKCVKSEKGEFS 286 (883)
Q Consensus 275 f~vv~~~~~~~~ 286 (883)
|..........+
T Consensus 158 f~~~~~~~~~~~ 169 (179)
T TIGR00537 158 FRYEIVAERGLF 169 (179)
T ss_pred CeEEEEEEeecC
Confidence 988776555433
No 98
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=1.5e-11 Score=133.16 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHhCC-----C-eEEEEeCCHHHHHHHHHHHhhc-----------------------
Q psy8372 134 GKTRVLDVGAGIGR----ISKYLLAKHF-----D-KIDLLEQSSKFIEQAKEEILKD----------------------- 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~----~~~~l~~~g~-----~-~V~gvD~S~~~le~A~~~~~~~----------------------- 180 (883)
++.+|+|+|||+|. ++..++..+. . +|+|+|+|+.|++.|++..-..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 3443444321 2 7999999999999999853110
Q ss_pred ----cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 181 ----CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 181 ----~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
....+.|.+.|+.+.++.. ++||+|+|.++++|+++++...++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~--~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPL--GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCcc--CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0135688899998865433 68999999999999988778899999999999999999976
No 99
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=4.1e-11 Score=113.41 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|+++........++++..|+...... ..++||.|++..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-SLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-hcCCCCEEEECC
Confidence 4567999999999999998887754 37999999999999999988766555667787876643222 125899999977
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..++ ...+++.++++|||||.+++..
T Consensus 97 ~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 SGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cchh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 5443 4589999999999999999875
No 100
>KOG1271|consensus
Probab=99.29 E-value=1e-11 Score=122.22 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=104.3
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+|||+|||+|.+...|++.+++ .++|+|.|+.+++.|+..+......+ ++|.+.|+.+.... .++||+|+--.++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~--~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL--SGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc--ccceeEEeecCce
Confidence 39999999999999999999988 59999999999999999888775544 89999999876443 3789999876655
Q ss_pred ccc------ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 214 MFI------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 214 ~hl------~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..+ +...+...+..+.++|+|||+++|..+++ +..++...+...||+...+-..
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~----------------T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF----------------TKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc----------------cHHHHHHHHhcCCeEEEEeecc
Confidence 443 11234567888999999999999998654 5678888899889887765443
No 101
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.28 E-value=3.7e-11 Score=123.33 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+.. +|+++|+|+.+++.|+++........++++..|+... ..++||+|++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEEEECC
Confidence 46779999999999999988877654 8999999999999999988765444567777776421 125899999987
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..++ +..++..+.++|+|||++++..... .+..+...+++++||+.+..
T Consensus 106 ~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~---------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 106 SGGN-----LTAIIDWSLAHLHPGGRLVLTFILL---------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred CccC-----HHHHHHHHHHhcCCCeEEEEEEecH---------------hhHHHHHHHHHHCCCCcceE
Confidence 6544 3468899999999999998865321 13457778899999876543
No 102
>KOG3178|consensus
Probab=99.28 E-value=3.6e-11 Score=130.92 Aligned_cols=200 Identities=28% Similarity=0.395 Sum_probs=149.4
Q ss_pred chhHHHHHHHHhhhcCCCcccc-ccccCCCccc---cchHHHHHHHHHHhhcc-cCCCC----CCeEEEEcCCCChHHHH
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDG-MLNGYSSISD---LDIQTSNQFLSSLYCQK-KSDPG----KTRVLDVGAGIGRISKY 151 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~-~~~~y~~~~~---~~~~~~~~lL~~l~~~~-~~~~~----~~rVLDVGCGtG~~~~~ 151 (883)
....||.+...||...+.+.++ .+.+|..... .+...+..+++.+.... ..... -...+|+|.|.|..+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3467899999999999999988 6777877655 56677777777775421 12222 36889999999999999
Q ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHH
Q psy8372 152 LLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 231 (883)
Q Consensus 152 l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~ 231 (883)
++. .+++|.+++.....+-.+..... .+ ++.+.+|...-.| +-|+|++.|+|||++|++..++|++++..
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P-----~~daI~mkWiLhdwtDedcvkiLknC~~s 264 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTP-----KGDAIWMKWILHDWTDEDCVKILKNCKKS 264 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---cceecccccccCC-----CcCeEEEEeecccCChHHHHHHHHHHHHh
Confidence 988 56679999999888877777663 22 3455555544333 34799999999999999999999999999
Q ss_pred hccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccccc
Q psy8372 232 LNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLW 291 (883)
Q Consensus 232 LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~el~ 291 (883)
|+|||.+++.+..... ....+..+....+..+.+...+.++|.+....+.....|.+.+
T Consensus 265 L~~~GkIiv~E~V~p~-e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF 323 (342)
T KOG3178|consen 265 LPPGGKIIVVENVTPE-EDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGF 323 (342)
T ss_pred CCCCCEEEEEeccCCC-CCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcC
Confidence 9999999999985544 2333444455566666777777778888877777776665544
No 103
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.27 E-value=2.5e-12 Score=130.79 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
-.++||+|||||..+..+-.. ...++|+|+|.+|++.|.++..-. ...++++..+.....++.||+|++..||.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 579999999999999755443 556999999999999999875432 33455555444323347899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
++.. +..++..+...|+|||.|.++.-...+.....-.....+.++....+.++...||+++..+..
T Consensus 200 YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 200 YLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 9976 889999999999999999998765544433222333445556778899999999999876654
No 104
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.27 E-value=3.1e-11 Score=121.91 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++++||||+|||.|.+..++.........|+|++++.+..|.++.. .++++|+.+-....++++||.|+++.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv-------~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGV-------SVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCC-------CEEECCHHHhHhhCCCCCccEEehHhH
Confidence 5789999999999999988877544469999999999988877643 578999887554444689999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-----------C-------CcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-----------G-------VKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-----------~-------~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
|+++.. +..+|.++.|+ |...+++.++.. + ..+.+-.....+.-|..++++++++.|
T Consensus 85 LQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 85 LQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred HHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 999965 88999988776 557777765511 1 111111222233446779999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
++++....
T Consensus 160 i~I~~~~~ 167 (193)
T PF07021_consen 160 IRIEERVF 167 (193)
T ss_pred CEEEEEEE
Confidence 99886543
No 105
>PRK06922 hypothetical protein; Provisional
Probab=99.26 E-value=3e-11 Score=141.78 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|+++..... ..+.++++|+.+++....+++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 5789999999999998877765443 89999999999999998865432 245678888877652122368999999999
Q ss_pred ccccC-----------hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL-----------DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~-----------ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+. .+++..++++++++|||||.+++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 98762 356889999999999999999998853
No 106
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=1.8e-11 Score=127.39 Aligned_cols=130 Identities=14% Similarity=0.019 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|..+..++..... +|+|+|+|+.|++.|+++.......++.++++|+ ..+.....+++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999999988776433 7999999999999999988766556678999998 5443111136899999976
Q ss_pred cccccC------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
...+.. ......++++++++|||||.+++..... .....+.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~---------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE---------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH---------------HHHHHHHHHHHhCccccc
Confidence 543321 1114579999999999999999987321 123466777777887554
No 107
>KOG2361|consensus
Probab=99.25 E-value=3.4e-11 Score=124.04 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=128.2
Q ss_pred HHHHHHHHhhhcCCCcccc-ccccCCCccccchHHHHHHHHHHhhcccC-CCCCCeEEEEcCCCChHHHHHHHhCCC---
Q psy8372 84 SHYSEVTEYYSNVPPTIDG-MLNGYSSISDLDIQTSNQFLSSLYCQKKS-DPGKTRVLDVGAGIGRISKYLLAKHFD--- 158 (883)
Q Consensus 84 ~~~~~~~~yWd~~~~~~~~-~~~~y~~~~~~~~~~~~~lL~~l~~~~~~-~~~~~rVLDVGCGtG~~~~~l~~~g~~--- 158 (883)
.+-.....|||......+. ... ....++......... .....+||+||||.|.....+++....
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfk-----------dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l 98 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFK-----------DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRL 98 (264)
T ss_pred hhhcchhhhhhhhhhhccccccc-----------hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCe
Confidence 4455678899876544332 111 222333333222111 112238999999999999888876554
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC--CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCc
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG 236 (883)
.|++.|.|+.+++..+++..... ..+.....|+..-. .....+++|.|++..+|.-++++....++.+++++|||||
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG 177 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG 177 (264)
T ss_pred EEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence 79999999999999998765443 33334444544322 2222479999999999999999889999999999999999
Q ss_pred EEEEEecccCCCcc------------cccCCcc--cccccchhhhhhhhhcccccccccC
Q psy8372 237 IIIIKDNVASGVKN------------EYDDEDS--SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 237 ~lvi~~~~~~~~~~------------~~~~~~~--~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++.|....+..+ .+-..|+ .++.+.+++..+|..|||..+.-..
T Consensus 178 ~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 178 SLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred EEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence 99999987554321 1112333 3666888999999999999875443
No 108
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=5.9e-11 Score=122.57 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++......++|+|+|+.+++.|+++ .++++..|+.+..+...+++||+|+|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 35679999999999999877665444689999999999998652 23677888765221112368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-----------CCc-------ccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-----------GVK-------NEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-----------~~~-------~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
+||+++ +..+++++.+++++ +++..+... ... ..+.........+..++.++++++|
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 999976 77899988887654 344332210 000 0000111223457889999999999
Q ss_pred cccccccCC
Q psy8372 275 LKCVKSEKG 283 (883)
Q Consensus 275 f~vv~~~~~ 283 (883)
|+++.....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999875543
No 109
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=1.5e-10 Score=117.16 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++..+....++++..|..+..+ +++||+|+|+.-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---ccceeEEEEccc
Confidence 5679999999999999988887776 899999999999999999988765547888888876443 369999999988
Q ss_pred ccccCh---HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILD---EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~d---ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++.-.+ +-...++..+.+.|||||.+++...
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 765543 2367899999999999999987653
No 110
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.24 E-value=7.9e-11 Score=132.14 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-------CCCCccceeccCCCCceeeEe--cCHHHHHHHHHc---cC
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-------PGGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GS 415 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-------~~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~ 415 (883)
..-.+.+.+.+|++| ...||.||.||+|+... ..+. +..-+....++..+|+ ..|+++..+..- ..
T Consensus 239 ~~~~~~Led~IRevf-vg~GFqEV~TPtLt~eE~~E~m~~~~g~-eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~ 316 (453)
T TIGR02367 239 EDYLGKLERDITKFF-VDRGFLEIKSPILIPAEYIERMGIDNDT-ELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALP 316 (453)
T ss_pred ccHHHHHHHHHHHHH-HHCCCEEEECCeecchHHHHhhcCccCC-cccccceEecCceEecccCHHHHHHHHHHhhhhcc
Confidence 345678999999999 68999999999996310 1111 1100110113456888 888888764321 12
Q ss_pred C-CcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 416 V-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 416 ~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
+ -|+|+||+|||+|..+.+|..||+|+++++++.
T Consensus 317 ~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 317 DPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred CCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECC
Confidence 2 399999999999999999999999999998763
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.1e-10 Score=126.07 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=108.5
Q ss_pred ccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEE
Q psy8372 110 ISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCY 188 (883)
Q Consensus 110 ~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~ 188 (883)
...........+++.+. .++.+|||+|||+|.++..+++.|+..|+|+|++|.+++.|+.++..+.... ....
T Consensus 144 G~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 144 GTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred CCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 33445666667777775 3688999999999999998888899899999999999999999988764332 1111
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
..+... ....++||+|+++- |.++ +..+...+.+.|||||+++++..... ..+...+
T Consensus 218 ~~~~~~---~~~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~~---------------q~~~V~~ 274 (300)
T COG2264 218 GFLLLE---VPENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSGILED---------------QAESVAE 274 (300)
T ss_pred cccchh---hcccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehHh---------------HHHHHHH
Confidence 111111 11125899999975 4444 67899999999999999999984321 2457788
Q ss_pred hhhhcccccccccCCC
Q psy8372 269 LFSKANLKCVKSEKGE 284 (883)
Q Consensus 269 l~~~aGf~vv~~~~~~ 284 (883)
.+.++||+++......
T Consensus 275 a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 275 AYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHhCCCeEeEEEecC
Confidence 8889999998776553
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=3e-10 Score=119.32 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh------------ccCCCccEEEccCCCCCCC-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK------------DCDKLDKCYNVGIQDFKPE-D 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~------------~~~~~~~~~~~d~~~~~~~-~ 199 (883)
.++.|||+.|||.|..+.+|+.+|+. |+|+|+|+.+++.+.+.... .....++++++|+.++.+. .
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35679999999999999999999998 99999999999998663210 1223568999999988642 2
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc-ccccc
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA-NLKCV 278 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a-Gf~vv 278 (883)
..+.||+|+-..+|++++++...+..+.+.++|+|||.+++........ ....-+..+..++.+++... .++.+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~-----~~GPPf~v~~~e~~~lf~~~~~i~~l 195 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK-----SQTPPYSVTQAELIKNFSAKIKFELI 195 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC-----CCCCCCcCCHHHHHHhccCCceEEEe
Confidence 2358999999999999999889999999999999999988887532211 11112333567888888653 55555
Q ss_pred cc
Q psy8372 279 KS 280 (883)
Q Consensus 279 ~~ 280 (883)
..
T Consensus 196 ~~ 197 (226)
T PRK13256 196 DS 197 (226)
T ss_pred ee
Confidence 43
No 113
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=1.4e-10 Score=124.77 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++...+.... .+. +.... .+||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~--~~~-----~~~~~--~~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL--NVY-----LPQGD--LKADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc--eEE-----EccCC--CCcCEEEEcCc
Confidence 4678999999999999987777676679999999999999999987553211 011 11111 26999999754
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+ ....++.++.++|||||+++++..... ....+...+.+.||+++....
T Consensus 189 ~~-----~~~~l~~~~~~~LkpgG~lilsgi~~~---------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 AN-----PLLELAPDLARLLKPGGRLILSGILEE---------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HH-----HHHHHHHHHHHhcCCCcEEEEEECcHh---------------hHHHHHHHHHHCCCEEEEEEE
Confidence 32 256789999999999999999874321 345778889999999876544
No 114
>PRK04266 fibrillarin; Provisional
Probab=99.18 E-value=2.1e-10 Score=121.12 Aligned_cols=140 Identities=10% Similarity=0.033 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs 209 (883)
..++.+|||+|||+|.++..++.... ..|+|+|+++.|++.+.+++... .++.++.+|+.+... ....++||+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 35788999999999999988877642 37999999999999887776543 456788888765211 112357999986
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
.... + .....++++++++|||||.++++.+.. ... +..... +...+..+.++++||+.+.....
T Consensus 148 d~~~---p-~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d--~~~~~~---~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 148 DVAQ---P-NQAEIAIDNAEFFLKDGGYLLLAIKAR-SID--VTKDPK---EIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred CCCC---h-hHHHHHHHHHHHhcCCCcEEEEEEecc-ccc--CcCCHH---HHHHHHHHHHHHcCCeEEEEEcC
Confidence 4321 1 123457899999999999999964321 110 111111 11234569999999998866553
No 115
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.16 E-value=2.6e-10 Score=128.57 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC---CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+.+|||+|||+|.++..++..++. +|+++|.|+.|++.|++++..+.. .+++++..|..+... +++||+|+|+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~---~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---PFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC---CCCEEEEEEC
Confidence 469999999999999988887655 899999999999999999875532 245777777654322 2489999999
Q ss_pred cccccc---ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+|.. .++...++++.++++|+|||.+++...
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 887653 333456899999999999999999863
No 116
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.14 E-value=4.4e-10 Score=122.65 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=101.1
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
.+...+...+++..+. .++.+|||+|||+|.++..+++.|..+|+|+|+++.+++.|++++..++... .+...
T Consensus 144 ~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~ 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS 216 (295)
T ss_dssp HCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES
T ss_pred CCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE
Confidence 3344555666666663 4678999999999999998888898899999999999999999998775443 33222
Q ss_pred cCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
...+.. .++||+|+++-.. +-+..++..+.++|+|||+++++-.... ..+.+.+.+
T Consensus 217 ~~~~~~----~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~---------------~~~~v~~a~ 272 (295)
T PF06325_consen 217 LSEDLV----EGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE---------------QEDEVIEAY 272 (295)
T ss_dssp CTSCTC----CS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG---------------GHHHHHHHH
T ss_pred Eecccc----cccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH---------------HHHHHHHHH
Confidence 222221 2689999987543 2266788899999999999999885322 344667777
Q ss_pred hhcccccccccCC
Q psy8372 271 SKANLKCVKSEKG 283 (883)
Q Consensus 271 ~~aGf~vv~~~~~ 283 (883)
++ ||+++.....
T Consensus 273 ~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 273 KQ-GFELVEEREE 284 (295)
T ss_dssp HT-TEEEEEEEEE
T ss_pred HC-CCEEEEEEEE
Confidence 76 9998765543
No 117
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.14 E-value=5e-10 Score=116.08 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++...+ ..++.++..|..+..+. ..+.||+|+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~V~ 116 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDRIF 116 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCEEE
Confidence 357789999999999999877664 33 379999999999999999987665 45667888887664322 135899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+... . .++..+++.+.++|||||++++..... .+..+....++++||.
T Consensus 117 ~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL---------------ETVNNALSALENIGFN 164 (198)
T ss_pred ECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH---------------HHHHHHHHHHHHcCCC
Confidence 8542 2 336789999999999999998755211 1345677778888874
No 118
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.14 E-value=2.3e-09 Score=113.69 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=62.1
Q ss_pred CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 785 GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 785 G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
..||.+|++|.+. +.+.+.++..| .+...+.| ++++..| +||++|+|||+|||+|+|++..+|.+|.+
T Consensus 229 a~ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 229 AFELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred eeeecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceee
Confidence 3699999999999 88888898888 56677766 9999999 99999999999999999999999999986
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.14 E-value=5.1e-10 Score=122.83 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...+... .+.+...+... . .+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~--~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P--IEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c--cCCCceEEEEec
Confidence 356899999999999998887777768999999999999999998765432 23344443222 1 135899999976
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..++ +..++.++.++|||||+++++..... ...++...+++. |+++..
T Consensus 234 ~~~~-----l~~ll~~~~~~LkpgG~li~sgi~~~---------------~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 234 LAEV-----IKELYPQFSRLVKPGGWLILSGILET---------------QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred CHHH-----HHHHHHHHHHHcCCCcEEEEEeCcHh---------------HHHHHHHHHHcc-CceeeE
Confidence 5432 55789999999999999999874321 234666666665 776644
No 120
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.14 E-value=1.1e-09 Score=120.42 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC--Cc----cceeccCCCCceeeEe--cCHHHHHHHHHcc
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG--AR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMVG 414 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g--a~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~~ 414 (883)
-+.+.+.||++| ...||.|+.+|.|+.. .|.+ |+ .|.+. ...-|+ +||-+..-|. ..
T Consensus 110 l~~~~~~Ir~if-~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~-----~~~lLRThTSp~qir~L~-~~ 182 (339)
T PRK00488 110 ITQTIEEIEDIF-VGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID-----DGLLLRTHTSPVQIRTME-KQ 182 (339)
T ss_pred HHHHHHHHHHHH-HhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc-----CCceeeccCcHHHHHHHH-hc
Confidence 456788899999 5899999999999652 1111 11 12221 112343 8887655543 23
Q ss_pred CCC-cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHHh
Q psy8372 415 SVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYCL 466 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i~ 466 (883)
... |+|++|+|||++..+.+|.|+|+|+|.-+... ++.++...++.++++++
T Consensus 183 ~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 183 KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 333 89999999999999999999999999877664 47888888887777765
No 121
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=4.5e-10 Score=117.09 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++..... .+++++.+|..+..+.. ++||+|++
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~--~~fD~Ii~ 148 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH--APFDAIIV 148 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC--CCccEEEE
Confidence 467899999999999997666543 23799999999999999998876543 34678888887654432 68999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++|+++ ++.+.|+|||+|++..
T Consensus 149 ~~~~~~~~~--------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTIPS--------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence 999887742 5778999999998865
No 122
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.13 E-value=1.2e-10 Score=131.07 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=106.7
Q ss_pred ecccCCCCCccccccCccchhhhcccccccccChhhhHHHHH-----HHHHHHHHHHHHhcCCCeEEEcCCeeccCC---
Q psy8372 309 LNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRF-----RSKFLMRTREFLATHRDFVEVETPTLFKRT--- 380 (883)
Q Consensus 309 l~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~-----rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--- 380 (883)
|+.+...+||...+..-...|+||++| |++..++++.+ .+.+.+++|++| ...||.||.||+|+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f-~~~GF~EV~TPtLt~ee~~e 237 (417)
T PRK09537 163 LLSPKDKISLNSEKPKFKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFF-VDRGFLEIKSPILIPAEYIE 237 (417)
T ss_pred hcCcccccccccCCchhhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHH-HHCCCEEEECCeeecHHHHH
Confidence 333334556654433345678888888 89999999999 999999999999 57999999999996431
Q ss_pred ----CCCCccceeccCCCCceeeEe--cCHHHHHHHHHc---cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 381 ----PGGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 381 ----~~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
..|+ .+.-+....+...+|+ ..|++++.+..- ... -|+|+||+|||+|..+..|.+||+|++++..+.+
T Consensus 238 ~~g~~~g~-~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~ 316 (417)
T PRK09537 238 RMGIDNDT-ELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSG 316 (417)
T ss_pred HhCCCCcc-cchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCc
Confidence 1111 1111111113456788 678887764211 111 2899999999999988888899999999998764
Q ss_pred --HHHHHHHHHHHHHHH
Q psy8372 451 --RDDVMRLIEELLCYC 465 (883)
Q Consensus 451 --~~dvm~~~E~li~~i 465 (883)
+.|++.++++++..+
T Consensus 317 ~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 317 CTRENLENIIDDFLKHL 333 (417)
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 778777777666554
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=99.12 E-value=3.5e-10 Score=122.78 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH-hC-CC-eEEEEeCCHHHHHHHHHHHhh-c-cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLA-KH-FD-KIDLLEQSSKFIEQAKEEILK-D-CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~-~g-~~-~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
++.+|||||||.|.++..++. .. .. +++|+|.++.+++.|++.+.. . ..+.++|..+|+.+.... .+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCcCEEE
Confidence 567999999998865443433 32 33 799999999999999999854 3 345689999999886433 25899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+. +++++..++..++++++++.|+|||.+++..
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999965668999999999999999999987
No 124
>PRK14968 putative methyltransferase; Provisional
Probab=99.12 E-value=6.7e-10 Score=113.28 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|.|+.+++.++++........ +.++..|+.+... +.+||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR---GDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc---ccCceEEEEC
Confidence 356799999999999999888874 469999999999999999887654332 5677787765332 2479999987
Q ss_pred ccccccC-------------------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 211 WVLMFIL-------------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 211 ~vL~hl~-------------------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
..+.+.. ...+..+++++.++|||||.+++..... ...+.+.+++.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------~~~~~l~~~~~ 162 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------TGEDEVLEYLE 162 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------CCHHHHHHHHH
Confidence 6543311 1225678999999999999998876321 12457888999
Q ss_pred hccccccccc
Q psy8372 272 KANLKCVKSE 281 (883)
Q Consensus 272 ~aGf~vv~~~ 281 (883)
++||++....
T Consensus 163 ~~g~~~~~~~ 172 (188)
T PRK14968 163 KLGFEAEVVA 172 (188)
T ss_pred HCCCeeeeee
Confidence 9999876543
No 125
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.12 E-value=2.7e-10 Score=121.51 Aligned_cols=114 Identities=28% Similarity=0.396 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC--Cc----cceeccCCC--CceeeEe--cCHHHHHHHHH
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG--AR----EFVVPTHEP--NKFYSLV--QSPQQLKQLLM 412 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g--a~----~f~v~~~~~--~~~~~L~--~Spql~kq~l~ 412 (883)
-+++.+.+|++| -..||.|+.+|.++.. .|.. |+ .|.+..... .....|+ +||.+..-+..
T Consensus 19 ~~~~~~~i~~~~-~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~ 97 (247)
T PF01409_consen 19 ITKFIREIRDIF-VGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNK 97 (247)
T ss_dssp HHHHHHHHHHHH-HCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHH
Confidence 456788899999 5899999999999541 2221 22 243321111 2334565 56755544301
Q ss_pred cc-CCCcEEEEeeceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 413 VG-SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 ~~-~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
.. .=-|+|+||+|||+|..+.+|.|||+|+|.-+...+ +.++..+++.+++++
T Consensus 98 ~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~l 153 (247)
T PF01409_consen 98 HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKEL 153 (247)
T ss_dssp TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHH
Confidence 11 124999999999999999999999999998776643 666666666655554
No 126
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.12 E-value=2.1e-10 Score=118.54 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~ 211 (883)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|++++......+++++++|+.++... ..++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3568999999999999988887654 7999999999999999988776666789999998765321 1125899999876
Q ss_pred cccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.... ....++++++++|||||.|++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54433210 01478999999999999999887
No 127
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=6.9e-10 Score=116.33 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++.... .+|+++|+++.+++.|++++...+..++++..+|.....+.. ++||+|++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~--~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN--APYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC--CCcCEEEEC
Confidence 5788999999999999986665532 379999999999999999988766667789999987654433 689999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++++ ..+.+.|||||++++..
T Consensus 153 ~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch--------HHHHHhhCCCcEEEEEE
Confidence 8776653 24667899999998865
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.10 E-value=8.6e-10 Score=121.78 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC-CCc-C-CCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK-PED-L-NIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~-~~~-~-~~~FDl 206 (883)
+++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|++++..... -.+.++++|+.+.. ... . .+...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4567999999999999998887753 3699999999999999998765422 23466888887632 211 0 012345
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+++..+++++++++...+|++++++|+|||.+++......
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 5566789999888899999999999999999998765443
No 129
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.10 E-value=2.8e-10 Score=107.04 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=85.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
|.+|||+|||+|.++..++..+..+++|+|+++..++.|+.++..... ..+++++.|..+.......++||+|+++...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 458999999999999988888845899999999999999999887643 4578999998876522224799999998876
Q ss_pred cccCh------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 214 MFILD------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~d------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..... +....+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 53311 2356899999999999999998764
No 130
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=8.6e-10 Score=115.81 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..... +|+++|+++.+++.|++++...+..+++++.+|..+..+.. .+||+|++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~--~~fD~Ii~~ 153 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL--APYDRIYVT 153 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc--CCCCEEEEc
Confidence 56789999999999999877766432 59999999999999999988776667789999987654332 589999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
....+++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccccc--------HHHHHhcCcCcEEEEEE
Confidence 7766663 34678899999999865
No 131
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=8.1e-10 Score=118.19 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|||+|||+|.++..++..... +++|+|+|+.+++.|+++.......++.++.+|+.+..+ .++||+|+++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~Vi~npP 163 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP---GGKFDLIVSNPP 163 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc---CCceeEEEECCC
Confidence 4568999999999999988876443 799999999999999999877655567888888876322 368999999654
Q ss_pred cc------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 213 LM------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 213 L~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
.. ++.. .....++.++.++|+|||.+++... +....++.+
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------~~~~~~~~~ 227 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------YDQGEAVRA 227 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------ccHHHHHHH
Confidence 32 1111 1134788999999999999998651 123457888
Q ss_pred hhhhccccccccc
Q psy8372 269 LFSKANLKCVKSE 281 (883)
Q Consensus 269 l~~~aGf~vv~~~ 281 (883)
++.++||+.+...
T Consensus 228 ~l~~~gf~~v~~~ 240 (251)
T TIGR03534 228 LFEAAGFADVETR 240 (251)
T ss_pred HHHhCCCCceEEE
Confidence 9999999876543
No 132
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.08 E-value=1.5e-09 Score=121.30 Aligned_cols=126 Identities=16% Similarity=-0.042 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. .++|+|+++.|++.|++++...+...+.+..+|+.+++... ++||+|+++..
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~--~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS--ESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc--CCCCEEEECCC
Confidence 5678999999999999887666554 59999999999999999988765555678899998876543 68999999743
Q ss_pred cc-------ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LM-------FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~-------hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.. +...+....++.+++++|||||++++..+. ...+..+++.+|| ++..
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------RIDLESLAEDAFR-VVKR 313 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------CCCHHHHHhhcCc-chhe
Confidence 21 111122578999999999999999988742 2356678899999 5543
No 133
>PRK14967 putative methyltransferase; Provisional
Probab=99.08 E-value=9.1e-10 Score=116.31 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..... .+.++..|+.+..+ +++||+|+++..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~---~~~fD~Vi~npP 110 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVE---FRPFDVVVSNPP 110 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhcc---CCCeeEEEECCC
Confidence 45679999999999999887776655899999999999999998875543 35677788765422 358999999854
Q ss_pred ccccCh-------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
....+. ..+..+++++.++|||||.+++...... ...++...+++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---------------~~~~~~~~l~~~ 175 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---------------GVERTLTRLSEA 175 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---------------CHHHHHHHHHHC
Confidence 322111 1245788999999999999998653221 223556666666
Q ss_pred ccccc
Q psy8372 274 NLKCV 278 (883)
Q Consensus 274 Gf~vv 278 (883)
||.+.
T Consensus 176 g~~~~ 180 (223)
T PRK14967 176 GLDAE 180 (223)
T ss_pred CCCeE
Confidence 66543
No 134
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=1.3e-09 Score=122.16 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
...+|||+|||+|.++..++..... +|+++|+|+.|++.|++++..+... .+++..|.... .+++||+|+|+..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~----~~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD----IKGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc----cCCCccEEEECCC
Confidence 3458999999999999988887654 7999999999999999988766433 35666676542 1368999999999
Q ss_pred ccccC---hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL---DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~---ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+.. .+....+++++.+.|||||.+++..+.
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 88642 234679999999999999999998753
No 135
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.08 E-value=1.7e-08 Score=108.12 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=65.5
Q ss_pred eEEEec-CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 779 YDLVLN-GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 779 ~Dlv~~-G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
|+-+++ ..|+.+|++|.+ ++.+.+.++..| .+...+.||+++ ..| +||++|.|||+|||+|+|++.++|.+|.+
T Consensus 232 w~~~l~~a~ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 232 WNPVLDDAFELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred EccccCceeeecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 334444 369999999999 999999999988 677889999999 788 99999999999999999999999999986
No 136
>KOG1541|consensus
Probab=99.07 E-value=8.4e-10 Score=112.05 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
++...+.+.+..+... .+.+.-|||||||+|..+..+...|. .++|+|+|+.|++.|.++-.+. .++.+|+
T Consensus 32 IQ~em~eRaLELLalp---~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~eg-----dlil~DM 102 (270)
T KOG1541|consen 32 IQAEMAERALELLALP---GPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEG-----DLILCDM 102 (270)
T ss_pred ehHHHHHHHHHHhhCC---CCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhc-----Ceeeeec
Confidence 4556666666655431 12366899999999999987777775 4999999999999999743332 4677787
Q ss_pred CCCCCCcCCCCccEEEEccccccc---------ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFI---------LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl---------~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+-.+.. +++||.|++..+++++ |...+..++..++.+|++|++.++.-.
T Consensus 103 G~Glpfr-pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 103 GEGLPFR-PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCC-CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 7655544 5899999998777655 223467789999999999999998863
No 137
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=4.3e-10 Score=118.12 Aligned_cols=145 Identities=21% Similarity=0.161 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
.++.|||..|||.|.....|+.+|+. |+|+|+|+.+++.|.+..... ....++++++|+.++.+..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~- 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED- 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-
Confidence 56779999999999999999999885 999999999999995543220 1234578899998876543
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+|+=..+|+-++.+...+..+.++++|+|||.+++.+...... .....-+..+.+++.++|. .+|++...
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----EMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----CSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----CCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 257999999999999998889999999999999999955544332111 1112223346789999998 78887765
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
....
T Consensus 189 ~~~~ 192 (218)
T PF05724_consen 189 EEED 192 (218)
T ss_dssp EEEE
T ss_pred eccc
Confidence 5433
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.05 E-value=1e-09 Score=119.39 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~----~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++.. .+.+..+|+.+++... ++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~-----~~~~~~~d~~~lp~~~--~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP-----QVTFCVASSHRLPFAD--QSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC-----CCeEEEeecccCCCcC--CceeEEEE
Confidence 457899999999999987776532 258999999999999987643 3578889988876543 68999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
..+ + ..+++++|+|||||++++..+.
T Consensus 158 ~~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 158 IYA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 653 1 2357899999999999998754
No 139
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.05 E-value=3.2e-10 Score=113.57 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=88.5
Q ss_pred EEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcE
Q psy8372 161 DLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGI 237 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~ 237 (883)
+|+|+|+.|++.|+++.... ...+++++++|+.+++... ++||+|++..+++|+++ +..++++++|+|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~--~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD--CEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC--CCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeE
Confidence 48999999999998776532 1245789999999886544 78999999999999966 88999999999999999
Q ss_pred EEEEecccCCCcc------------------cccC-Ccc-------cccccchhhhhhhhhcccccccccC
Q psy8372 238 IIIKDNVASGVKN------------------EYDD-EDS-------SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 238 lvi~~~~~~~~~~------------------~~~~-~~~-------~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++.++....... .... ... ....+.+++.++++++||+.+....
T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 9999876432110 0000 011 1224677899999999999875543
No 140
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=2.4e-09 Score=120.26 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+..+||||||+|.++..++...+. .++|+|+++.|++.|.+++...+..++.++++|+..+.....++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4568999999999999988888654 799999999999999999887777778899999876432222479999998765
Q ss_pred ccccChHH----HHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDED----IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded----~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..|..... ...++.+++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54432211 1579999999999999999987
No 141
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.04 E-value=1e-08 Score=109.94 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=64.9
Q ss_pred EEEecC-eEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 780 DLVLNG-NEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 780 Dlv~~G-~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+-+++. .||.+|++|. |++.+.+.++..| .+...+.||++ +..| +|+++|+|||+|||+|+|++..+|.||.+
T Consensus 259 ~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 259 NPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred chhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 333443 5999999999 9999999999988 67788999999 7778 99999999999999999999999999986
No 142
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.03 E-value=4.2e-09 Score=110.91 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=115.3
Q ss_pred ccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHh
Q psy8372 99 TIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 99 ~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~ 178 (883)
+.+++++ .+.+.-+..++.++++..-...........++||||+|.|..+..++. .+++|+++|.|+.|....+++.
T Consensus 60 ~iNG~Lg-RG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg- 136 (265)
T PF05219_consen 60 DINGILG-RGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKG- 136 (265)
T ss_pred hHhhhhc-CCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCC-
Confidence 3455553 567777888888888875522211122567899999999999987744 5677999999999977666542
Q ss_pred hccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC----------
Q psy8372 179 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV---------- 248 (883)
Q Consensus 179 ~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~---------- 248 (883)
+...+..++... +.+||+|.|.++|....+ +..+|+.+++.|+|+|+++++....-..
T Consensus 137 --------~~vl~~~~w~~~--~~~fDvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~ 204 (265)
T PF05219_consen 137 --------FTVLDIDDWQQT--DFKFDVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSN 204 (265)
T ss_pred --------CeEEehhhhhcc--CCceEEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCC
Confidence 233444444433 258999999999998855 8999999999999999999875432111
Q ss_pred --cccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 249 --KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 249 --~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
...++.....+......+.++|+.+||+++.-.+-
T Consensus 205 ~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 205 RPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred CchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 01111222222223345558999999999865443
No 143
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=3.9e-09 Score=115.58 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...+. .++.++.+|+.+..+ +++||+|+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC---CCCccEEEECC
Confidence 4569999999999999988876543 799999999999999999887654 457889998765322 24799999973
Q ss_pred c------c-------cccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 212 V------L-------MFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 212 v------L-------~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
- + +|-+. +....+++.+.+.|+|||++++.... +.....+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----------------~~~~v~~ 260 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----------------SMEALEE 260 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------CHHHHHH
Confidence 1 1 11111 12467899999999999999987621 1246777
Q ss_pred hhhhccccccccc
Q psy8372 269 LFSKANLKCVKSE 281 (883)
Q Consensus 269 l~~~aGf~vv~~~ 281 (883)
++..+||......
T Consensus 261 ~~~~~~~~~~~~~ 273 (284)
T TIGR03533 261 AYPDVPFTWLEFE 273 (284)
T ss_pred HHHhCCCceeeec
Confidence 8888887765433
No 144
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=99.00 E-value=1.1e-09 Score=129.30 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=69.4
Q ss_pred eecCCcccc-------chhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEec
Q psy8372 622 LILPKDLDS-------TNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSW 694 (883)
Q Consensus 622 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 694 (883)
|++|+++.+ +++.++++.++++. ++.+++.|.+ + . ....++++++++|.+.+++++||+++|.+
T Consensus 309 I~vp~~~~~l~~e~~~srr~~d~l~e~aK~-~GakGL~~~~--e---l---~~~~is~e~l~~L~e~l~ak~GDll~~~a 379 (630)
T PRK04028 309 IKLPGFKGLLGREIQPGRRLGTELADYAKA-WGVGGIFHTD--E---L---PAYGITEEEVEALREALGAGENDAFILVA 379 (630)
T ss_pred EEcCCcccccccccccCHHHHHHHHHHHHH-cCCCceEEec--c---c---ccCCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 888877644 78999999999996 6778887766 1 1 13345888899999999999999999999
Q ss_pred CCchhhHhHHHHHHHHhh
Q psy8372 695 GKQEDVLSLLGMIRSESH 712 (883)
Q Consensus 695 ~~~~~~~~~lg~lr~~~~ 712 (883)
+..+.++++||+||.+++
T Consensus 380 ~k~~~v~~~LG~LR~~la 397 (630)
T PRK04028 380 DEEEKAEKALEAVIERAK 397 (630)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 998999999999999999
No 145
>PTZ00146 fibrillarin; Provisional
Probab=98.99 E-value=5.1e-09 Score=113.37 Aligned_cols=139 Identities=16% Similarity=0.015 Sum_probs=90.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC-CCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-PEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~FDlVv 208 (883)
..++++|||+|||+|.++..++.... ..|+++|+|+.|++...+.+... .++.++..|+.... .....++||+|+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence 46788999999999999998887742 27999999998665554444322 35577888875421 011124799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.... + ++...++.++.++|||||.|+|... +..... ..+.....+ ++ .+.|+++||+.+....
T Consensus 208 ~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ik-a~~id~---g~~pe~~f~-~e-v~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 208 ADVAQ---P-DQARIVALNAQYFLKNGGHFIISIK-ANCIDS---TAKPEVVFA-SE-VQKLKKEGLKPKEQLT 271 (293)
T ss_pred EeCCC---c-chHHHHHHHHHHhccCCCEEEEEEe-cccccc---CCCHHHHHH-HH-HHHHHHcCCceEEEEe
Confidence 98742 2 2355677899999999999999532 221100 000001111 22 3778999999775544
No 146
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.99 E-value=6.6e-09 Score=104.57 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=105.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.++.+++|||||+|..+..++..++. +|+++|-++++++..++++...+..++..+.+++.+..... .++|.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCEEEE
Confidence 3468889999999999999999866655 89999999999999999999888888899999988766544 27999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc-ccccccCCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL-KCVKSEKGE 284 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf-~vv~~~~~~ 284 (883)
... -. ...+++.+...|||||++++..... .+.....+.+++.|+ +++......
T Consensus 109 GGg-~~-----i~~ile~~~~~l~~ggrlV~naitl---------------E~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 109 GGG-GN-----IEEILEAAWERLKPGGRLVANAITL---------------ETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred CCC-CC-----HHHHHHHHHHHcCcCCeEEEEeecH---------------HHHHHHHHHHHHcCCceEEEEEeec
Confidence 887 33 5579999999999999999987422 234466777888888 555544433
No 147
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.99 E-value=5.8e-09 Score=114.28 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=82.0
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc--
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW-- 211 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~-- 211 (883)
.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...... .+.++++|+.+..+ ..+||+|+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc---CCCccEEEECCCC
Confidence 69999999999999988877653 7999999999999999998766543 47889988865322 13799999962
Q ss_pred -----------cccccCh----------HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 -----------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 -----------vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.|-|. +.+..++..+.+.|+|||++++..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2333321 246789999999999999999877
No 148
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.99 E-value=3.6e-09 Score=110.82 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|..+..++... .+|+++|+++.+++.|++++...+..++++...|..+..+. .++||+|++...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--YAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc--CCCcCEEEEccC
Confidence 567899999999999998665554 47999999999999999998876555678888887553332 258999999887
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++++ ..+.+.|+|||.+++...
T Consensus 154 ~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhhh--------HHHHHhcCCCcEEEEEEc
Confidence 76653 346789999999998764
No 149
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.99 E-value=4.4e-09 Score=108.82 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++......+++++.+|+.+.... ....+|.|+...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-LAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh-CCCCCCEEEEEC
Confidence 4678999999999999987775543 37999999999999999998766555678888887542111 113467765532
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. .....+++++.++|+|||.+++...
T Consensus 118 ----~--~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 ----G--RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----C--cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1 2356899999999999999999874
No 150
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.99 E-value=4.8e-09 Score=118.59 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
.....+++.+.... +++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|++++..... ++.++++|+.+
T Consensus 236 peTE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 236 PETEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFD 311 (423)
T ss_pred ccHHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhc
Confidence 33444555443221 24569999999999999877765443 799999999999999999876543 56888998865
Q ss_pred CCCCcCCCCccEEEEcccccccCh-------------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILD-------------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVK 249 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~d-------------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~ 249 (883)
..... .++||+|+|+... ++. +-+..++..+.+.|+|||.+++....
T Consensus 312 ~~l~~-~~~FDLIVSNPPY--I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----- 383 (423)
T PRK14966 312 TDMPS-EGKWDIIVSNPPY--IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----- 383 (423)
T ss_pred ccccc-CCCccEEEECCCC--CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----
Confidence 32211 2579999997632 110 12457788888999999998876521
Q ss_pred ccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 250 NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 250 ~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
...+...+++.+.||..+..
T Consensus 384 -----------~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 384 -----------DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred -----------cHHHHHHHHHHHCCCcEEEE
Confidence 13557888888889876544
No 151
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.98 E-value=4e-09 Score=94.50 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=82.4
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+|||+|||+|.++..++.....+++++|+++.+++.+++...........+...|..+.... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-ADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-cCCceEEEEEccceeeh
Confidence 58999999999998777644458999999999999998544433445567888888876541 13689999999999883
Q ss_pred ChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 217 LDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 217 ~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+....++..+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 245889999999999999999876
No 152
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=7.5e-09 Score=112.52 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..... .|+|+|+|+.+++.|+++........+.++.+|+.+... .++||+|+++.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---CCceeEEEECC
Confidence 45679999999999999988877643 799999999999999998873334456888888754322 35899999964
Q ss_pred ccc------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhh
Q psy8372 212 VLM------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 267 (883)
Q Consensus 212 vL~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~ 267 (883)
... .+.. +....+++++.++|+|||++++... +.....+.
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g----------------~~~~~~~~ 247 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG----------------YDQGEAVR 247 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC----------------chHHHHHH
Confidence 221 0100 2246788999999999999998541 11244688
Q ss_pred hhhhhcccccccc
Q psy8372 268 LLFSKANLKCVKS 280 (883)
Q Consensus 268 ~l~~~aGf~vv~~ 280 (883)
+++.+.||..+..
T Consensus 248 ~~l~~~gf~~v~~ 260 (275)
T PRK09328 248 ALLAAAGFADVET 260 (275)
T ss_pred HHHHhCCCceeEE
Confidence 8898899875544
No 153
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=7.5e-09 Score=111.29 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=93.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++...+ .+++++|+.+.......++||+|+++.-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999887766433 79999999999999999987543 36788887664332123579999997632
Q ss_pred c------ccCh------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhh
Q psy8372 214 M------FILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 214 ~------hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 269 (883)
. .+++ +-+..++..+.++|||||.+++.... ....+...+
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----------------~~~~~v~~~ 227 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----------------RQAPLAVEA 227 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------------chHHHHHHH
Confidence 1 1111 11457888899999999999987621 123467788
Q ss_pred hhhcccccccccCC
Q psy8372 270 FSKANLKCVKSEKG 283 (883)
Q Consensus 270 ~~~aGf~vv~~~~~ 283 (883)
+++.||........
T Consensus 228 l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 228 FARAGLIARVASSE 241 (251)
T ss_pred HHHCCCCceeeEcc
Confidence 88888876554443
No 154
>PHA03411 putative methyltransferase; Provisional
Probab=98.97 E-value=4e-09 Score=113.01 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
...+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++.. .++++++|+.++... .+||+|+++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----~v~~v~~D~~e~~~~---~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----EAEWITSDVFEFESN---EKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----CCEEEECchhhhccc---CCCcEEEEcCC
Confidence 35699999999999988776654 3479999999999999988643 457889998876532 58999999999
Q ss_pred ccccChHH------------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded------------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++|.+.++ ..++++....+|+|+|.+.+.- ..... + ....++.++.++++++|
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~~---y-----~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRPY---Y-----DGTMKSNKYLKWSKQTG 206 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-ecccc---c-----cccCCHHHHHHHHHhcC
Confidence 98865432 2456777788889999766652 11111 1 11235779999999999
Q ss_pred cccc
Q psy8372 275 LKCV 278 (883)
Q Consensus 275 f~vv 278 (883)
|..-
T Consensus 207 ~~~~ 210 (279)
T PHA03411 207 LVTY 210 (279)
T ss_pred cEec
Confidence 9864
No 155
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.96 E-value=5.4e-09 Score=116.27 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc----------CCCccEEEccCCCCC----CCc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFK----PED 199 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~----------~~~~~~~~~d~~~~~----~~~ 199 (883)
++.+|||+|||-|..+.-+...+...++|+|+|...|+.|+++..... .-...++.+|...-. ...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999997777888888899999999999999999983211 012255666654321 111
Q ss_pred CCCCccEEEEccccccc--ChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 200 LNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
....||+|-|..+|||. +.+....+|+++...|+|||+++.+.+...
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 12589999999999998 335577899999999999999999997643
No 156
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.96 E-value=2.9e-09 Score=112.53 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+...+|||+|||+|.++..++.+.. .+++|||+.+.|.+.|+++...+ ...++++++.|+.++.......+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 3477999999999999997776644 48999999999999999998865 345679999999998765544579999998
Q ss_pred ccccccCh----------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 211 WVLMFILD----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 211 ~vL~hl~d----------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.-..-... -+...+++.+.++|||||.+.+.-... ...++..++.+.+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e----------------rl~ei~~~l~~~~ 186 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE----------------RLAEIIELLKSYN 186 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------HHHHHHHHHHhcC
Confidence 75433221 137889999999999999999987321 2447788888878
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|...+..
T Consensus 187 ~~~k~i~ 193 (248)
T COG4123 187 LEPKRIQ 193 (248)
T ss_pred CCceEEE
Confidence 7765443
No 157
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.96 E-value=4.9e-09 Score=109.68 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~F 204 (883)
.++.+|||+|||+|.++..+++... ..|+|+|+++ |. ....+.++++|+.+... ...+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 5678999999999999998887743 3799999998 21 12335789999887530 0113689
Q ss_pred cEEEEcccccccChH--H-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 205 DVIWIQWVLMFILDE--D-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 205 DlVvs~~vL~hl~de--d-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+|+|+.+.++.... + ...+++++.++|||||.+++..+.
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999998876654321 1 246899999999999999998743
No 158
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=4.7e-09 Score=128.30 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=107.2
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
++++..+.++..+ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..++.. .++++++
T Consensus 524 lDqr~~R~~~~~~-------~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~ 596 (702)
T PRK11783 524 LDHRPTRRMIGQM-------AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA 596 (702)
T ss_pred HHHHHHHHHHHHh-------cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc
Confidence 4677777777776 357799999999999999888877778999999999999999999876543 5789999
Q ss_pred cCCCCCCCcCCCCccEEEEccccc-------cc--ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccc
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWVLM-------FI--LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 261 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~vL~-------hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~ 261 (883)
|+.++.... .++||+|++..--. .. ...+...++..+.++|+|||.+++......
T Consensus 597 D~~~~l~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~--------------- 660 (702)
T PRK11783 597 DCLAWLKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG--------------- 660 (702)
T ss_pred cHHHHHHHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------
Confidence 987653211 35899999964210 11 013467889999999999999988763221
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
...-.+.+.++|+.+.....
T Consensus 661 -~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 661 -FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred -CChhHHHHHhCCCeEEEEec
Confidence 11126677778877665543
No 159
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=98.94 E-value=6.5e-08 Score=103.46 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=60.3
Q ss_pred CeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcC-CCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 785 GNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 785 G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G-~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
..||++-++|. |.+.+.+.++..| .+...+.||+++ ..| +||++|.|||+|||+|+|++..+|.+|.+
T Consensus 246 a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 246 AFELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred eeeeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 36999999997 5667777788888 677889999998 778 99999999999999999999999999986
No 160
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=9.4e-09 Score=110.78 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~ 196 (883)
++-+++.+.. ..+.+|||+|||.|.++..+++..+. +++.+|.+..+++.|++++..+...+..+...|..+-.
T Consensus 147 S~lLl~~l~~-----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300)
T COG2813 147 SRLLLETLPP-----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300)
T ss_pred HHHHHHhCCc-----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc
Confidence 4444555532 34459999999999999988888765 89999999999999999999775554345555554322
Q ss_pred CCcCCCCccEEEEcccccccCh---HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~d---ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.++||+|+|+.-+|--.. .-..+++..+.+.|++||.|.|..+
T Consensus 222 ----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 ----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 248999999999874432 1134899999999999999999985
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.92 E-value=8.3e-09 Score=117.65 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
..++++..+..+..+ .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++. ..++++
T Consensus 204 ~flDqr~~R~~~~~~-------~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i 276 (396)
T PRK15128 204 YYLDQRDSRLATRRY-------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_pred cChhhHHHHHHHHHh-------cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 335677777777776 35789999999999999877766666899999999999999999987654 357899
Q ss_pred EccCCCCCCC--cCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPE--DLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~--~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++|+.++... ...++||+|++..-...-.. ..+..++..+.++|+|||.++...+
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998775321 11358999999854311111 1355667788999999999998764
No 162
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.92 E-value=1.7e-08 Score=103.59 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~ 192 (883)
.....+.|..++. ..+.+|||||||||..+.+++...+. ...-.|+++..+...+........ +....+..|+
T Consensus 11 k~pIl~vL~~~l~-----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLP-----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhC-----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3344445555532 22336999999999999999888766 566678888887666665554433 3345667777
Q ss_pred CCCCCCc------CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------cccc----C-C
Q psy8372 193 QDFKPED------LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYD----D-E 255 (883)
Q Consensus 193 ~~~~~~~------~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~----~-~ 255 (883)
.+..... ..++||+|+|.+++|-++.+....+++.+.++|+|||.|++..+...+.. ..++ . .
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 6542211 23689999999999999988899999999999999999999887654322 1122 2 2
Q ss_pred cccccccchhhhhhhhhcccccccc
Q psy8372 256 DSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 256 ~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+-+++.+++.++..++||+....
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc
Confidence 2345678889999999999997643
No 163
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.91 E-value=1.9e-08 Score=115.06 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=28.2
Q ss_pred cEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
|+|.|++|||+|..|.+|.|||+|+|.-+.
T Consensus 344 k~fsigrVfR~d~iDatH~~eFhQ~EG~vv 373 (492)
T PLN02853 344 RYFSIDRVFRNEAVDRTHLAEFHQVEGLVC 373 (492)
T ss_pred EEEeccceecCCCCCcccCccceeEEEEEE
Confidence 999999999999999999999999997654
No 164
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=1.4e-08 Score=112.27 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=91.7
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc-
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV- 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v- 212 (883)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+. ..++++++|+.+..+ +++||+|+++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC---CCCccEEEECCCC
Confidence 68999999999999988877543 799999999999999999887643 357889999765332 247999999731
Q ss_pred ------------ccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 213 ------------LMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 213 ------------L~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
++|-+. +....+++.+.+.|+|||.+++.... +......++
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-----------------~~~~~~~~~ 274 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-----------------SRVHLEEAY 274 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------CHHHHHHHH
Confidence 112111 22468899999999999999986521 122456666
Q ss_pred hhccccccccc
Q psy8372 271 SKANLKCVKSE 281 (883)
Q Consensus 271 ~~aGf~vv~~~ 281 (883)
...|+......
T Consensus 275 ~~~~~~~~~~~ 285 (307)
T PRK11805 275 PDVPFTWLEFE 285 (307)
T ss_pred hhCCCEEEEec
Confidence 66666554443
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.90 E-value=1.5e-08 Score=108.25 Aligned_cols=102 Identities=28% Similarity=0.345 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||||+|+|.++..++...+. +++..|. |.+++.+++ ..+++++.+|+.+ +.+ . +|+|++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~P--~-~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PLP--V-ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CCS--S-ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh--hhc--c-ccceeeeh
Confidence 45678999999999999999988777 8999997 889999888 4567889999872 222 3 99999999
Q ss_pred cccccChHHHHHHHHHHHHHhccC--cEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKN--GIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPG--G~lvi~~~~~~ 246 (883)
+||++++++...+|++++++|+|| |+|+|.+....
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 999999999999999999999999 99999987643
No 166
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-08 Score=104.67 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|+.+.-+ ++-..+|+.+|..+...+.|++++...+..++.+.++|.....+.. .+||.|+...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvl-a~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~--aPyD~I~Vta 146 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVL-ARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE--APYDRIIVTA 146 (209)
T ss_pred CCCCCeEEEECCCchHHHHHH-HHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC--CCcCEEEEee
Confidence 367899999999999999744 4444479999999999999999999888777889999988765554 6899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
....+|. .+.+.||+||++++-.-
T Consensus 147 aa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 9888865 25678999999999774
No 167
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2e-08 Score=109.91 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceec--cCCCCcee---------eEe--cCHHHHHHHHHccC
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVP--THEPNKFY---------SLV--QSPQQLKQLLMVGS 415 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~--~~~~~~~~---------~L~--~Spql~kq~l~~~~ 415 (883)
.-..++..++++| -+.||.|+..|-+...-.+ .|--++-+ .+.....+ -|+ +||=....|.--..
T Consensus 112 pl~~~~e~i~~iF-~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~ 190 (335)
T COG0016 112 PLTQTIEEIEDIF-LGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAK 190 (335)
T ss_pred hHHHHHHHHHHHH-HHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCC
Confidence 3356778888888 4799999999977543222 11111111 11111122 333 56644444321111
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHH
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCY 464 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~ 464 (883)
=-|+|.+|+|||+|..+.+|.|||+|+|-=.... ++.+++.+++++++.
T Consensus 191 ~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~ 242 (335)
T COG0016 191 IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKK 242 (335)
T ss_pred CCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHH
Confidence 2399999999999999999999999999644332 244444444444433
No 168
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.87 E-value=1.8e-08 Score=115.84 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.0
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
-|+|+|++|||+|..+.+|.+||+|+|..+...+
T Consensus 358 ~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCCCCCcCceeEEEEEEEEeCC
Confidence 3999999999999999999999999999887644
No 169
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=1.4e-08 Score=111.17 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+.+.+||++|||+|..+..+++. +..+|++||+++.+++.|++.+... ...+++++..|+..+... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 35679999999999999988876 4558999999999999999987642 245668888998765433 2468999
Q ss_pred EEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++...-.+.+... ...+++.+++.|+|||.+++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99975444332222 2578999999999999988754
No 170
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.85 E-value=1.2e-08 Score=106.41 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
......+++.+. ..++.+|||||||+|+.+..++.. +.. .|+++|..+.+++.|++++......++.++.+|.
T Consensus 58 P~~~a~~l~~L~-----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD-----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT-----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G
T ss_pred HHHHHHHHHHHh-----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch
Confidence 334444555543 368899999999999999755554 322 6999999999999999999988777888999997
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
....+.. .+||.|++......+|. .+.+.||+||+|++-..
T Consensus 133 ~~g~~~~--apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPEE--APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGGG---SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred hhccccC--CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 7654443 68999999998877643 26677999999999764
No 171
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=98.83 E-value=1e-09 Score=100.20 Aligned_cols=81 Identities=25% Similarity=0.431 Sum_probs=72.2
Q ss_pred eecCCc-cccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhh
Q psy8372 622 LILPKD-LDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDV 700 (883)
Q Consensus 622 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 700 (883)
|++|++ ..+||+++++|.++|++ ++..++.|++++++ +|.+++.|++++++.++|.+.+++++||+++|.+|+...+
T Consensus 14 i~vp~~~~~~srk~id~l~~~ak~-~ga~gL~~ikv~~~-~~~s~i~kfl~e~~~~~l~~~~~a~~GD~ll~~Ag~~~~v 91 (95)
T PF02938_consen 14 IVVPGGAAKLSRKQIDKLEEFAKK-FGAKGLAWIKVEEG-ELKSPIAKFLSEEELKALIERLGAKPGDLLLFVAGKKEIV 91 (95)
T ss_dssp EEETTG-TTTTHCCCCCCCCHHHH-CCHCHCCCEEESTC-EEECTTCCCCHHHHHHHHHHHTT--TTEEEEEEEESHHHH
T ss_pred EEeCCccccCCHHHHHHHHHHHHH-hCCCCceeeeEcCC-cccCcccccCCHHHHHHHHHHhCCCCCCEEEEECCCHHHH
Confidence 999996 47999999999999997 89999999999884 5999999999999999999999999999999999998777
Q ss_pred HhHH
Q psy8372 701 LSLL 704 (883)
Q Consensus 701 ~~~l 704 (883)
+++|
T Consensus 92 ~~~L 95 (95)
T PF02938_consen 92 NKAL 95 (95)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 7654
No 172
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.82 E-value=2.4e-08 Score=110.74 Aligned_cols=100 Identities=21% Similarity=0.109 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..... .|+++|+++.+++.|++++...+..++.++.+|..+..+.. ++||+|++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCccEEEEC
Confidence 46789999999999999877765432 69999999999999999888766666788888876654433 579999998
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+++++ ..+.+.|+|||.+++..
T Consensus 157 ~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 7665543 23567899999998865
No 173
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.5e-08 Score=106.10 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=91.9
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
+|||+|||+|..+..++..+.. +|+|+|+|+.+++.|++++..++..++.+++.|+.+. ..++||+|+|+.- +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~----~~~~fDlIVsNPP--Y 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP----LRGKFDLIVSNPP--Y 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc----cCCceeEEEeCCC--C
Confidence 7999999999999988888775 8999999999999999999987643333444443321 1358999999762 2
Q ss_pred cCh-------------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 216 ILD-------------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 216 l~d-------------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
++. +-...++..+.+.|+|||.+++..-. ...+...+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~----------------~q~~~v~~~~ 250 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL----------------TQGEAVKALF 250 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC----------------CcHHHHHHHH
Confidence 211 13678889999999999999988721 1356788999
Q ss_pred hhcc-ccccccc
Q psy8372 271 SKAN-LKCVKSE 281 (883)
Q Consensus 271 ~~aG-f~vv~~~ 281 (883)
.+.| |..+...
T Consensus 251 ~~~~~~~~v~~~ 262 (280)
T COG2890 251 EDTGFFEIVETL 262 (280)
T ss_pred HhcCCceEEEEE
Confidence 9999 5544443
No 174
>KOG1975|consensus
Probab=98.80 E-value=1.1e-08 Score=109.26 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC------CccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK------LDKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~------~~~~ 187 (883)
..+....++...+.... .+++..+||+|||-|.-++..-+.|...++|+|+++..++.|+++...-... .+.|
T Consensus 98 ~lRnfNNwIKs~LI~~y-~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 98 FLRNFNNWIKSVLINLY-TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred ehhhhhHHHHHHHHHHH-hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 34444455555543322 2467789999999999988888888889999999999999999988754211 1367
Q ss_pred EEccCCCCC------CCcCCCCccEEEEccccccc--ChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 188 YNVGIQDFK------PEDLNIKYDVIWIQWVLMFI--LDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 188 ~~~d~~~~~------~~~~~~~FDlVvs~~vL~hl--~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+|...-. +.+ .+||+|-|..++|+. +.+..+.+|+++++.|||||+++-+.+..
T Consensus 177 ~~~Dc~~~~l~d~~e~~d--p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKD--PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred EEeccchhHHHHhccCCC--CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 777764321 122 249999999999976 33667899999999999999999988643
No 175
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=5e-08 Score=112.95 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++...+.. +.++++|+.+......+++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECC
Confidence 4678999999999999998888765 37999999999999999998876544 478888887653221135799999533
Q ss_pred c------ccc------c-ChH-------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 V------LMF------I-LDE-------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 v------L~h------l-~de-------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. +.+ . ..+ ....++..+.++|||||++++++++
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 111 1 111 1347899999999999999999864
No 176
>KOG3010|consensus
Probab=98.80 E-value=1.1e-08 Score=105.93 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=73.2
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.++|+|||+|..+. .++..+.+|+|+|+|+.||+.|++......... ......+..++.-. +++.|+|+|..++|+
T Consensus 36 ~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLITAAQAVHW 112 (261)
T ss_pred eEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--CcceeeehhhhhHHh
Confidence 78999999996665 555557889999999999999988765432111 12222222333222 479999999999999
Q ss_pred cChHHHHHHHHHHHHHhccCc-EEEEEec
Q psy8372 216 ILDEDIIKFLNLCKQILNKNG-IIIIKDN 243 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG-~lvi~~~ 243 (883)
+. +..+.+.++|+||+.| .+++-..
T Consensus 113 Fd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 113 FD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 84 6789999999998766 6666553
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=3.7e-08 Score=116.07 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..... +|+|+|+|+.+++.|++++..... ..+.++.+|+.+... .++||+|+|+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECC
Confidence 3468999999999999877766433 799999999999999999876543 356788888754322 24899999964
Q ss_pred c--------------ccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhh
Q psy8372 212 V--------------LMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFC 267 (883)
Q Consensus 212 v--------------L~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~ 267 (883)
. ..|-|. +.+..+++.+.++|+|||.+++... ....+...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig----------------~~q~~~v~ 278 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG----------------FKQEEAVT 278 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC----------------CchHHHHH
Confidence 2 111110 1245678899999999999988641 11345778
Q ss_pred hhhhhcccccccc
Q psy8372 268 LLFSKANLKCVKS 280 (883)
Q Consensus 268 ~l~~~aGf~vv~~ 280 (883)
+++.+.||..+..
T Consensus 279 ~~~~~~g~~~~~~ 291 (506)
T PRK01544 279 QIFLDHGYNIESV 291 (506)
T ss_pred HHHHhcCCCceEE
Confidence 8888889876543
No 178
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.79 E-value=3.6e-08 Score=101.31 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~F 204 (883)
.++.+|||+|||+|.++..++..... +|+++|+|+.+ . ...+.+++.|+.+... ....++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----IENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----CCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 57889999999999999877766422 69999999864 1 1234677788765321 0113579
Q ss_pred cEEEEcccc--------cccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL--------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|++..+. +|... +....++..++++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999986532 22211 224689999999999999999975
No 179
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=5.8e-08 Score=113.04 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...+..+++++..|+.++.+ +++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D 325 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---EEQPDAILLD 325 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---CCCCCEEEEc
Confidence 467899999999999988776642 23799999999999999999987766667889999887653 2589999963
Q ss_pred c------ccc-------ccChH-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLM-------FILDE-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~-------hl~de-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++. +...+ ....+|.++.++|||||+++.++++.
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 111 11111 13468999999999999999998654
No 180
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=5.9e-08 Score=112.59 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+..++.++.+|+.++... ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 5678999999999999988877632 37999999999999999999877666678899998876421 1136899999
Q ss_pred Ec------ccccccCh-------HH-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQ------WVLMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~------~vL~hl~d-------ed-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. .++++-++ ++ ...++.++.++|||||+++.++++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 73 34444332 11 3688999999999999999988543
No 181
>PRK04457 spermidine synthase; Provisional
Probab=98.76 E-value=3.2e-08 Score=107.13 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++...+. +++++|+++.+++.|++.+.... ..+++++.+|+.++.... +++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEEe
Confidence 45679999999999999888776544 79999999999999999876432 356788889886653322 3589999985
Q ss_pred ccc-cccChH-HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVL-MFILDE-DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL-~hl~de-d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..- ...+.. ....+++++++.|+|||.+++..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 311 111110 12589999999999999999965
No 182
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.76 E-value=8.7e-08 Score=111.53 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......+++.+.... ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+..+++++++|+.+
T Consensus 279 ~~~~e~l~~~vl~~l-~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 279 AQVNQKMVARALEWL-DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 333444444443221 22456799999999999999777665 5799999999999999999887665667899999875
Q ss_pred CCCC--cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 195 FKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 195 ~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.... ..+++||+|++..--.- ....+..+.+ ++|++.++++....+ ..+ ++. .|.+
T Consensus 357 ~l~~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCnp~t------------laR---Dl~-~L~~ 414 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCNPAT------------LAR---DAG-VLVE 414 (443)
T ss_pred hhhhhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeChHH------------hhc---cHH-HHhh
Confidence 4321 11257999998654222 2244544444 689999999873221 112 222 3457
Q ss_pred cccccccccCCCCCcc
Q psy8372 273 ANLKCVKSEKGEFSPM 288 (883)
Q Consensus 273 aGf~vv~~~~~~~~P~ 288 (883)
+||++...+.-+.||.
T Consensus 415 ~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 415 AGYRLKRAGMLDMFPH 430 (443)
T ss_pred CCcEEEEEEEeccCCC
Confidence 8999999988888873
No 183
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.74 E-value=7.4e-08 Score=104.46 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+..++.++..|...+.... +.||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D 147 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLD 147 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEc
Confidence 5678999999999999987776532 379999999999999999998776666778888877654322 469999963
Q ss_pred c------cccccC-------hH-------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 W------VLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~------vL~hl~-------de-------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. ++.+-+ .+ ....+|..+.++|||||+|+.++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 222111 11 1346999999999999999988854
No 184
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=7.6e-08 Score=111.35 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+.+++... ..+|+++|+|+.+++.+++++...+..++.+...|+..+.... +++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV-QDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh-hccCCEEEEC
Confidence 567899999999999998887763 2379999999999999999988776666788889987764221 3589999973
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++.+-++ + ...++|.++.+.|||||.++.++++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2 2221111 1 23577999999999999999998654
No 185
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.73 E-value=8.8e-08 Score=110.90 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...+... +.+..+|..........++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4678999999999999988877543 379999999999999999988765441 22245555433321113589999963
Q ss_pred ------ccccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 ------WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ------~vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++++.++ + ....+|.++.++|||||.++.++++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 35555433 1 13679999999999999999998654
No 186
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.73 E-value=1.6e-08 Score=104.76 Aligned_cols=114 Identities=29% Similarity=0.330 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C-C-ccceeccCCCCceeeEecCHHHHHHHHHcc----CCCcEEE
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G-A-REFVVPTHEPNKFYSLVQSPQQLKQLLMVG----SVDRYFQ 421 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g-a-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~----~~~rvf~ 421 (883)
|+.+.+.+|++| .+.||.||.||+++... .. | . ....+.....+..++|++|+...+...+.. .--|+||
T Consensus 2 ~~~~~~~~r~~l-~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 2 RSKIEQKLRRFM-AELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred HHHHHHHHHHHH-HHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 678999999999 68999999999997642 11 1 1 111122223356779999998765544443 3349999
Q ss_pred EeeceecCCCCC--CCCcceecccccccCCC------HHHHHHHHHHHHHHH
Q psy8372 422 IARCYRDESTRP--DRQPEFTQLDIELSFTT------RDDVMRLIEELLCYC 465 (883)
Q Consensus 422 I~~~FR~E~~~~--~r~~EFt~le~e~~~~~------~~dvm~~~E~li~~i 465 (883)
||+|||.|.... .|..||+|+++++.+.+ +.+++.++++++..+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 999999997654 56699999999999874 466777777776543
No 187
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.72 E-value=8.2e-08 Score=99.49 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.|++++...+..++++++.|+.++.... .++||+|+++.-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEECCCC
Confidence 467999999999999987777777789999999999999999988765556788999887643221 2479999998874
Q ss_pred cccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
..- -...++..+.. +|+|+|.+++....
T Consensus 132 ~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKG---LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 321 12344444444 47899988888743
No 188
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=1.2e-07 Score=110.33 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...+...+.++++|+.++.... .++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF-AEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh-cccCCEEEEc
Confidence 467899999999999998888763 2379999999999999999988776556788999987754221 2589999975
Q ss_pred cc------ccccCh-------HH-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WV------LMFILD-------ED-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~v------L~hl~d-------ed-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.. +.+-++ ++ ...++..+.++|||||.++.++..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 32 221111 11 246899999999999999987753
No 189
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.67 E-value=1.5e-07 Score=104.76 Aligned_cols=129 Identities=13% Similarity=0.024 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|.|+.|++.|++++...+..+++++++|+.++.... .+.||+|++...-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeEEEECCCC
Confidence 45799999999999999888766 469999999999999999988776666899999998764321 2479999998542
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
.-+ ...+.++...++|++.++++..... . ..++..+ .|+++.....-..||
T Consensus 251 ~G~-----~~~~~~~l~~~~~~~ivyvsc~p~t------------~---~rd~~~l---~~y~~~~~~~~DmFP 301 (315)
T PRK03522 251 RGI-----GKELCDYLSQMAPRFILYSSCNAQT------------M---AKDLAHL---PGYRIERVQLFDMFP 301 (315)
T ss_pred CCc-----cHHHHHHHHHcCCCeEEEEECCccc------------c---hhHHhhc---cCcEEEEEEEeccCC
Confidence 211 1222233344678888887763221 1 1233333 588888888777776
No 190
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=1.6e-07 Score=100.00 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC----cCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE----DLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~----~~~~~FD 205 (883)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...+. ..++++.+|+.+..+. ...++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3567999999999998877765432 3899999999999999999887743 4578889988764221 1125899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|++... .+.+..++..+.+.|+|||.+++....+++
T Consensus 147 ~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G 183 (234)
T PLN02781 147 FAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFG 183 (234)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCC
Confidence 9988542 234678899999999999998887765554
No 191
>PLN02366 spermidine synthase
Probab=98.65 E-value=1.9e-07 Score=103.06 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEcc
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVG 191 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d 191 (883)
...+++.++.... .++..+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+... ...+++++.+|
T Consensus 76 ~Y~e~l~h~~l~~--~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 76 AYQEMITHLPLCS--IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHhh--CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 3444555543211 2456799999999999999887653 347999999999999999987642 24567888898
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..+.....+++||+|++...-.+.+... -..+++.++++|+|||.+++..
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 76543221135899999965443332211 3478999999999999987654
No 192
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=1.8e-07 Score=101.74 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+... ....++++..|...+.... +++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEE
Confidence 44599999999999998887765 458999999999999999976543 1234566666654432211 35899999
Q ss_pred EcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.......+... ...+++.+++.|+|||.+++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 976532222222 3578999999999999999873
No 193
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=2e-07 Score=94.22 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++... ..+++++.+|+.++.... ..||.|+++..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--~~~d~vi~n~P 86 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--LQPYKVVGNLP 86 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc--cCCCEEEECCC
Confidence 456799999999999999888874 4699999999999999988753 345688999998876543 46999998765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. |+..+.+..++.... +.++|.+++..-
T Consensus 87 y-~~~~~~i~~~l~~~~--~~~~~~l~~q~e 114 (169)
T smart00650 87 Y-NISTPILFKLLEEPP--AFRDAVLMVQKE 114 (169)
T ss_pred c-ccHHHHHHHHHhcCC--CcceEEEEEEHH
Confidence 4 443333334433221 447888877653
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.62 E-value=6.1e-07 Score=95.79 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhccCCCc-cEEEccCCCCCCC-cCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDCDKLD-KCYNVGIQDFKPE-DLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~~FDlV 207 (883)
...-+||||.||.|.....++.... .+|...|.|+..++..++.+.+.+...+ +|.+.|+.+.... ......+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4567999999999998888877654 3899999999999999999998866555 9999998765321 112367999
Q ss_pred EEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcc----ccc-C---Cccc-ccccchhhhhhhhhccccc
Q psy8372 208 WIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN----EYD-D---EDSS-VVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 208 vs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~----~~~-~---~~~~-~~~s~~~~~~l~~~aGf~v 277 (883)
+.+..++.++|.+ +...++.+++++.|||+++.+...++.-.. .+. + ..|. ..++..+..++++.|||+-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999855 556899999999999999998865554321 111 1 2232 2467889999999999997
Q ss_pred ccccC
Q psy8372 278 VKSEK 282 (883)
Q Consensus 278 v~~~~ 282 (883)
+....
T Consensus 294 ~~q~I 298 (311)
T PF12147_consen 294 IDQRI 298 (311)
T ss_pred hhhee
Confidence 65543
No 195
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4e-07 Score=95.67 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..+++||||.|.|+|.++.+++.. +. .+|+.+|+-+..++.|++++...+. +++.+...|+.+..... .||+|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~---~vDav~ 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE---DVDAVF 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc---ccCEEE
Confidence 368999999999999999988753 44 3899999999999999999998643 33677778887765443 899998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.- +++ +-.++..++++|||||.+++..++.
T Consensus 169 LD-----mp~--PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 169 LD-----LPD--PWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred Ec-----CCC--hHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 74 455 8899999999999999999988654
No 196
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.59 E-value=4.8e-07 Score=102.96 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++++......+++++.+|+.++.... ..+||+|++..--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEEECCCC
Confidence 45699999999999999888765 569999999999999999998776557789999987654321 2469999998764
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..+. ..++..+. .++|++.++++.... .. ..++..+ .||++.....-..||
T Consensus 311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p~------------Tl---aRDl~~L---~gy~l~~~~~~DmFP 361 (374)
T TIGR02085 311 RGIG----KELCDYLS-QMAPKFILYSSCNAQ------------TM---AKDIAEL---SGYQIERVQLFDMFP 361 (374)
T ss_pred CCCc----HHHHHHHH-hcCCCeEEEEEeCHH------------HH---HHHHHHh---cCceEEEEEEeccCC
Confidence 3332 24444454 478999999887321 11 2233333 689998888888887
No 197
>PLN02672 methionine S-methyltransferase
Probab=98.58 E-value=3e-07 Score=114.97 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhcc----------------CCCccEEEccCCCCCC
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDC----------------DKLDKCYNVGIQDFKP 197 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~----------------~~~~~~~~~d~~~~~~ 197 (883)
+.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++..+. ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999998888765 389999999999999999987542 1357889999876442
Q ss_pred CcCCCCccEEEEccc--------------ccccC-------------------h---HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 198 EDLNIKYDVIWIQWV--------------LMFIL-------------------D---EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 198 ~~~~~~FDlVvs~~v--------------L~hl~-------------------d---ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.. ..+||+|+++.- ..|-| . +-+..++.++.+.|+|||.+++.
T Consensus 199 ~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21 136999998752 11100 0 11467888999999999999987
Q ss_pred ecccCCCcccccCCcccccccchhhh-hhhhhcccccccc
Q psy8372 242 DNVASGVKNEYDDEDSSVVRSLPQFC-LLFSKANLKCVKS 280 (883)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~l~~~aGf~vv~~ 280 (883)
.-. ...+... +++++.||+.+..
T Consensus 278 iG~----------------~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 278 MGG----------------RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred ECc----------------cHHHHHHHHHHHHCCCCeeEE
Confidence 621 1234666 5888888877644
No 198
>PRK01581 speE spermidine synthase; Validated
Probab=98.57 E-value=3.1e-07 Score=102.10 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHH--Hh-----hccCCC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEE--IL-----KDCDKL 184 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~--~~-----~~~~~~ 184 (883)
.+.....+.+.+.... ..+...+||++|||+|..+..+++.. ..+|++||+++.|++.|++. +. .....+
T Consensus 131 ~DE~iYHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR 208 (374)
T PRK01581 131 VDEQIYHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR 208 (374)
T ss_pred ccHHHHHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc
Confidence 4455555555554322 12445699999999999988777754 34899999999999999962 11 112456
Q ss_pred ccEEEccCCCCCCCcCCCCccEEEEccccc---ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccc
Q psy8372 185 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLM---FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR 261 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~---hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~ 261 (883)
++++..|+.++.... .++||+|++...-. ....-.-..+++.+++.|+|||.+++...... ....
T Consensus 209 V~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-----------~~~~ 276 (374)
T PRK01581 209 VNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-----------DAPL 276 (374)
T ss_pred eEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-----------hhHH
Confidence 788888888764332 36899999974211 11111125789999999999999988742110 0000
Q ss_pred cchhhhhhhhhccccccccc
Q psy8372 262 SLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~ 281 (883)
......+.++++|+.+....
T Consensus 277 ~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 277 VYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred HHHHHHHHHHHhCCceEEEE
Confidence 01135677888888766433
No 199
>PHA03412 putative methyltransferase; Provisional
Probab=98.56 E-value=2.5e-07 Score=97.19 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g----~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. .+.++.+|+..... +++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 36799999999999998776642 2379999999999999998754 24788888876543 358999999
Q ss_pred cccccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcc---cccccchhhhhhhhhcccc
Q psy8372 210 QWVLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDS---SVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 210 ~~vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~---~~~~s~~~~~~l~~~aGf~ 276 (883)
+.-+.-... .-...++.++.+++++|+. ++-. +.-+.. +....+ .-..+...+..+.++.|+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~-~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQ-MSANFR--YSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCc-ccccCc--ccCccceeeccCcccHHHHHHHHhcCee
Confidence 886652211 1245688899996666664 3211 111111 110000 0011234777888888886
Q ss_pred c
Q psy8372 277 C 277 (883)
Q Consensus 277 v 277 (883)
.
T Consensus 197 ~ 197 (241)
T PHA03412 197 M 197 (241)
T ss_pred e
Confidence 4
No 200
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.56 E-value=2e-07 Score=95.43 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
........+++.+.. .++...|.|+|||.+.++.. +..+. .|+..|+-.. +-.+..+|+
T Consensus 55 WP~nPvd~iI~~l~~----~~~~~viaD~GCGdA~la~~-~~~~~-~V~SfDLva~---------------n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVNPVDVIIEWLKK----RPKSLVIADFGCGDAKLAKA-VPNKH-KVHSFDLVAP---------------NPRVTACDI 113 (219)
T ss_dssp SSS-HHHHHHHHHCT----S-TTS-EEEES-TT-HHHHH---S----EEEEESS-S---------------STTEEES-T
T ss_pred CCCCcHHHHHHHHHh----cCCCEEEEECCCchHHHHHh-cccCc-eEEEeeccCC---------------CCCEEEecC
Confidence 344555666666642 24567899999999999963 34334 4999997531 124688999
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
...+... ++.|++++..+|+-. +...++.++.|+|||||.|.|.+... ...+...+...++.
T Consensus 114 a~vPL~~--~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S-------------Rf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 114 ANVPLED--ESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS-------------RFENVKQFIKALKK 175 (219)
T ss_dssp TS-S--T--T-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-------------G-S-HHHHHHHHHC
T ss_pred ccCcCCC--CceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-------------cCcCHHHHHHHHHH
Confidence 8877655 899999998888764 37889999999999999999999542 12256789999999
Q ss_pred cccccccccC
Q psy8372 273 ANLKCVKSEK 282 (883)
Q Consensus 273 aGf~vv~~~~ 282 (883)
.||++.....
T Consensus 176 ~GF~~~~~d~ 185 (219)
T PF05148_consen 176 LGFKLKSKDE 185 (219)
T ss_dssp TTEEEEEEE-
T ss_pred CCCeEEeccc
Confidence 9999987543
No 201
>KOG2899|consensus
Probab=98.54 E-value=3.2e-07 Score=94.86 Aligned_cols=112 Identities=19% Similarity=0.310 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC-----C------------------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-----K------------------------ 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-----~------------------------ 183 (883)
.+..+|||||.+|.++..+++.. ...|.|+|+++..++.|+++.+.... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 45689999999999999888764 44899999999999999998654211 0
Q ss_pred ------CccEE----EccCCCCCCCcCCCCccEEEEccccccc----ChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 184 ------LDKCY----NVGIQDFKPEDLNIKYDVIWIQWVLMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 184 ------~~~~~----~~d~~~~~~~~~~~~FDlVvs~~vL~hl----~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++.|. ..+..++. ......||+|+|-.+-.++ .|+.+..++++++++|.|||+|++.-..+.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk 213 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK 213 (288)
T ss_pred cccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence 00000 00001111 0113579999996654433 357799999999999999999999875544
No 202
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.53 E-value=3.3e-07 Score=94.67 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCChHH--HHH-HHh----CC--C-eEEEEeCCHHHHHHHHHHH--------------hh----c-----
Q psy8372 134 GKTRVLDVGAGIGRIS--KYL-LAK----HF--D-KIDLLEQSSKFIEQAKEEI--------------LK----D----- 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~--~~l-~~~----g~--~-~V~gvD~S~~~le~A~~~~--------------~~----~----- 180 (883)
+..||+..||++|.-. ..+ +.. .. . +++|+|+|+.+++.|++-. .. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999732 222 222 12 2 7999999999999998631 00 0
Q ss_pred -----cCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 181 -----CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 181 -----~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.-..+.|.+.|+.+..+. .+.||+|+|.+||-++..+....+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~--~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP--FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcc--cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 013457888888882222 368999999999999998888999999999999999999976
No 203
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.51 E-value=3.4e-07 Score=94.75 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=81.7
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEEccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs~~vL~ 214 (883)
-+||||||.|.++..++...++ .++|+|++...+..|.+++......++.++++|+..+.. ...++++|.|+.+..=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 7999999999999999988777 899999999999999999988888899999999887422 11136899999866444
Q ss_pred ccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 215 FILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 215 hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|..... -..++..++++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332211 3479999999999999999987
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.51 E-value=3.6e-07 Score=99.63 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChH--HHHH--HHhC----CC-eEEEEeCCHHHHHHHHHHHhh--------------------------
Q psy8372 135 KTRVLDVGAGIGRI--SKYL--LAKH----FD-KIDLLEQSSKFIEQAKEEILK-------------------------- 179 (883)
Q Consensus 135 ~~rVLDVGCGtG~~--~~~l--~~~g----~~-~V~gvD~S~~~le~A~~~~~~-------------------------- 179 (883)
.-||...||+||.- +..+ .... .. +|+|+|+|+.+++.|++-.-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999973 2222 2211 12 699999999999999874100
Q ss_pred -----ccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 180 -----DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 180 -----~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..-+.+.|.+.|+.+.+... .+.||+|+|.+++.|+.++....+++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01134578888887643221 368999999999999988889999999999999999988865
No 205
>PRK03612 spermidine synthase; Provisional
Probab=98.50 E-value=3.2e-07 Score=108.72 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHH--Hhh-----ccCCCccEEEccCCCCCCCcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEE--ILK-----DCDKLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~--~~~-----~~~~~~~~~~~d~~~~~~~~~~~~F 204 (883)
+++.+|||+|||+|..+..+++... .+|+++|+++.+++.|+++ ... ...++++++..|..++.... +++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCC
Confidence 4567999999999999988887644 5899999999999999983 221 12346688888887653322 3689
Q ss_pred cEEEEcccccccChH---HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 205 DVIWIQWVLMFILDE---DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 205 DlVvs~~vL~hl~de---d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
|+|++...-...+.. --..+++.+++.|||||.+++...... .......++.+.++++||
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~-----------~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY-----------FAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc-----------cchHHHHHHHHHHHHcCC
Confidence 999997543332210 023689999999999999998752110 011123467888899999
No 206
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4e-07 Score=91.55 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
-.+.+|+|+|||||.++...+..|+..|+|+|+++++++.|++++.+ ....++|+.+|+.++. ..+|.|+++.-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dtvimNPP 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDTVIMNPP 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----CccceEEECCC
Confidence 35678999999999999988888988999999999999999999987 4556799999999875 47899998775
Q ss_pred ccccC-hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFIL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~-ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+--.. ..| ..++..+.+.-+ .++-.. ...+.+-+......+|+.+....
T Consensus 118 FG~~~rhaD-r~Fl~~Ale~s~---vVYsiH----------------~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 118 FGSQRRHAD-RPFLLKALEISD---VVYSIH----------------KAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CccccccCC-HHHHHHHHHhhh---eEEEee----------------ccccHHHHHHHHHhcCCeEEEEE
Confidence 53221 111 245555555541 111111 11145677888899998887663
No 207
>KOG1499|consensus
Probab=98.49 E-value=4.1e-07 Score=99.47 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
-.+..|||||||+|.++...++.|+..|++||-|. +++.|++.+..+.. ..++++++.+.+...+. ++.|+|++-|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPV--EKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCc--cceeEEeehh
Confidence 36789999999999999988999988999999775 45999998887744 45788999888875542 6999999988
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+-+.+-- .-+...|-.--++|+|||.++=.
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 7666542 22566777777999999997643
No 208
>KOG2940|consensus
Probab=98.48 E-value=1.5e-07 Score=96.03 Aligned_cols=156 Identities=14% Similarity=0.215 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
....++.+.+.... +....++|||||-|.+...+...+..+++-+|.|..|++.++..-. ..-.......|-+.+
T Consensus 57 eig~rlaDrvfD~k---k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--p~i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 57 EIGDRLADRVFDCK---KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--PSIETSYFVGDEEFL 131 (325)
T ss_pred HHHHHHHHHHHHHh---hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--CceEEEEEecchhcc
Confidence 34444555554321 2234799999999999999999998899999999999999976422 111235566776666
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------cccCCcc-----ccccc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDS-----SVVRS 262 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------~~~~~~~-----~~~~s 262 (883)
++.+ +++|+|+++..+|++.+ +...+.+++..|||+|.++-+-........ .+..+.+ +-...
T Consensus 132 df~e--ns~DLiisSlslHW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q 207 (325)
T KOG2940|consen 132 DFKE--NSVDLIISSLSLHWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ 207 (325)
T ss_pred cccc--cchhhhhhhhhhhhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh
Confidence 6544 89999999999999966 889999999999999998876543322110 0111111 11112
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
..+.-.++.+|||..+..
T Consensus 208 vrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 208 VRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhhhHHhhcCccccee
Confidence 336677888888876543
No 209
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.47 E-value=6.5e-07 Score=103.96 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++... .+|+|+|+++.|++.|++++...+..+++++.+|+.+..+. ..+++||+|++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456799999999999999776654 57999999999999999998877667789999998764221 112479999986
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..=.-+ ...+++.+. .++|++.++++.... +...-...|.+.||++.....-+.||
T Consensus 370 PPr~G~----~~~~l~~l~-~l~~~~ivyvsc~p~----------------tlard~~~l~~~gy~~~~~~~~DmFP 425 (431)
T TIGR00479 370 PPRKGC----AAEVLRTII-ELKPERIVYVSCNPA----------------TLARDLEFLCKEGYGITWVQPVDMFP 425 (431)
T ss_pred cCCCCC----CHHHHHHHH-hcCCCEEEEEcCCHH----------------HHHHHHHHHHHCCeeEEEEEEeccCC
Confidence 542222 124555544 388998888875211 12222344567788888777777776
No 210
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.46 E-value=6.2e-07 Score=97.61 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 111 ~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
..+|++..+.++... ..+.+|||+=|-||.++.+++..|..+|+.||.|..+++.|++++.-++. ..++++
T Consensus 107 lFlDqR~nR~~v~~~-------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~ 179 (286)
T PF10672_consen 107 LFLDQRENRKWVRKY-------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI 179 (286)
T ss_dssp S-GGGHHHHHHHHHH-------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE
T ss_pred EcHHHHhhHHHHHHH-------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE
Confidence 346888999999888 45789999999999999988888887999999999999999999887743 467899
Q ss_pred EccCCCCCCC-cCCCCccEEEEccc-ccc--c-ChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPE-DLNIKYDVIWIQWV-LMF--I-LDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~-~~~~~FDlVvs~~v-L~h--l-~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.|+.++... ...++||+|++..- +.. . -..++..++..+.++|+|||.|++..+
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9998764321 11368999998432 110 0 014578899999999999999987775
No 211
>PLN02476 O-methyltransferase
Probab=98.45 E-value=1.4e-06 Score=94.42 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC----cCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE----DLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~----~~~~~FD 205 (883)
.+..+|||||||+|..+.+++.... ..|+.+|.++.+++.|++++...+.. .++++.+|+.+..+. ...++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3567999999999999998876432 26999999999999999999887543 678888888664321 1125899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
+|+.-.. ..++..++..+.++|+|||.+++....+++.
T Consensus 197 ~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 197 FAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence 9988653 3457889999999999999999877665543
No 212
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.44 E-value=1.6e-06 Score=90.46 Aligned_cols=123 Identities=19% Similarity=0.282 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCC-ccEEE-cc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKL-DKCYN-VG 191 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~-~d 191 (883)
...-.+|..+... .+..+|||||.+.|+.+.+++.... + +++.+|.++++.+.|++++...+... +..+. +|
T Consensus 45 ~e~g~~L~~L~~~----~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARL----SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHh----cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 4555666666543 4677999999999999998887655 3 89999999999999999999875433 55666 46
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
..+.......++||+|+.-.. ..+...++..+.++|+|||.+++.....++
T Consensus 121 al~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 655433222479999988542 244678999999999999999998766554
No 213
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.44 E-value=5.5e-07 Score=101.74 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~ 190 (883)
+|++..+..+.... .|.+|||+=|-||.++.+++..|+.+|++||.|..+++.|++++.-++. ..+.++++
T Consensus 203 lDqR~~R~~l~~~~-------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~ 275 (393)
T COG1092 203 LDQRDNRRALGELA-------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG 275 (393)
T ss_pred HHhHHHHHHHhhhc-------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehh
Confidence 57888888888884 4889999999999999988888887899999999999999999987753 44689999
Q ss_pred cCCCCCCCc--CCCCccEEEEccc-ccc-----c-ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPED--LNIKYDVIWIQWV-LMF-----I-LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~~--~~~~FDlVvs~~v-L~h-----l-~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.... .+.+||+|++..- +-- . -..++..++..+.++|+|||.+++.++.
T Consensus 276 Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 276 DVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 988765321 1248999997441 110 0 0145888999999999999999999854
No 214
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.39 E-value=1.5e-06 Score=92.83 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCC-CcCCCCccEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP-EDLNIKYDVI 207 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~~FDlV 207 (883)
..+|++|||.|.|+|.++..++.. +.. +|+..|..+..++.|++++...+. .++++...|+..-.+ ...+..+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 368999999999999999988764 333 899999999999999999998755 467889999854222 2223689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHh-ccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~L-KPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
+.- +|+ +-.++..+.++| ||||++++-.++-. ........+++.||..+.
T Consensus 118 fLD-----lp~--Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------Qv~~~~~~L~~~gf~~i~------- 168 (247)
T PF08704_consen 118 FLD-----LPD--PWEAIPHAKRALKKPGGRICCFSPCIE---------------QVQKTVEALREHGFTDIE------- 168 (247)
T ss_dssp EEE-----SSS--GGGGHHHHHHHE-EEEEEEEEEESSHH---------------HHHHHHHHHHHTTEEEEE-------
T ss_pred EEe-----CCC--HHHHHHHHHHHHhcCCceEEEECCCHH---------------HHHHHHHHHHHCCCeeeE-------
Confidence 874 444 678999999999 99999999886533 233556677778887652
Q ss_pred cccccccccccceEEEEeeeeeeccc
Q psy8372 287 PMDLWEDWGLLSKEVIASNITVLNKA 312 (883)
Q Consensus 287 P~el~~~~~~~~iEI~~e~i~vl~k~ 312 (883)
-+|+....+++-...
T Consensus 169 -----------~~Evl~R~~~v~~~~ 183 (247)
T PF08704_consen 169 -----------TVEVLLREWEVRPRR 183 (247)
T ss_dssp -----------EEEEEEEEEEEETCG
T ss_pred -----------EEEEEeeEEEEEecc
Confidence 356666666654433
No 215
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=98.37 E-value=2.2e-07 Score=86.92 Aligned_cols=47 Identities=32% Similarity=0.507 Sum_probs=43.7
Q ss_pred ccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 11 HTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 11 ~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
|+|+++..++.|++|+++|||++.|+ ..|+.|||++|.+|+++.++.
T Consensus 1 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~ 50 (108)
T cd04316 1 HYSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKK 50 (108)
T ss_pred CChhhCchhhCCCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCC
Confidence 79999999999999999999999999 789999999999999997543
No 216
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.36 E-value=2.5e-06 Score=86.66 Aligned_cols=108 Identities=20% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCC-C-CcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFK-P-EDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~-~-~~~~~~FDl 206 (883)
.++.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.++..+. ...+.+...+..+.. . .....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999877777 466899999998 9999999887653 344455555554411 0 011258999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+++.+++.- +....++..+.++|+|+|.+++...
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999875 4588999999999999999777764
No 217
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.36 E-value=1.7e-06 Score=90.09 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=88.9
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
..++..+... .+..+||||||++|+.+.+++...+. +|+.+|+++...+.|++.+...+. ..++++.+|+.+.
T Consensus 34 g~lL~~l~~~----~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 34 GQLLQMLVRL----TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHH----HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHHh----cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 3455555432 24669999999999999988875432 899999999999999999887643 4678899988764
Q ss_pred CCC----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 196 KPE----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 196 ~~~----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.+. ...++||+|+.-.. ..++..++..+.++|+|||.+++....+.+
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred HHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 321 11258999998653 234778899999999999999998766554
No 218
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.33 E-value=2.5e-06 Score=87.97 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
.+.+|||++||+|.++..++.+|..+|+++|.++.+++.+++++...... .+++++.|+.++... .....||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 47799999999999999999999888999999999999999998776443 567888888554211 101247888886
Q ss_pred ccccccChHHHHHHHHHHH--HHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCK--QILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~ 243 (883)
.-...- .....+..+. .+|+++|.+++...
T Consensus 129 PPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNG---ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 654321 1233444333 46888888887764
No 219
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.33 E-value=9.3e-07 Score=94.57 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----------------c-------------CCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----------------C-------------DKL 184 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----------------~-------------~~~ 184 (883)
++.++||||||+-..-...+...+.+++..|.++..++..++-+... + ..+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 46799999999965543234455668999999999988666543321 0 011
Q ss_pred ccEEEccCCCCCCCcC----CCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCC-cc
Q psy8372 185 DKCYNVGIQDFKPEDL----NIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE-DS 257 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~----~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~-~~ 257 (883)
-.++..|+...++..+ +.+||+|++..+|+.+.. +....+++++.++|||||.|++........ +..... -.
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~vG~~~F~ 214 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMVGGHKFP 214 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEETTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEECCEecc
Confidence 1466788877655432 245999999999988753 668999999999999999999987644322 222211 12
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+..++.++++||.+...+.
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccCCHHHHHHHHHHcCCEEEeccc
Confidence 3345677899999999999987773
No 220
>KOG1500|consensus
Probab=98.31 E-value=2.2e-06 Score=91.92 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+..|||||||+|.++...+..|..+|++|+.| +|.+.|++....+ ...++.++.+.++++..++ +.|+|++-.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE---k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE---KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch---hccEEEeccc
Confidence 467899999999999998888899999999965 7999999988765 3445677888888877654 8999999766
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+-++......-.++++|||.|.++-+.
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 555555555555556779999999987543
No 221
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.30 E-value=2e-06 Score=90.78 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=87.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~vL 213 (883)
..+||||||.|.+...+|...+. .++|||+....+..|.+++.+...+++..++.|+..+...-. +++.|-|+.+..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999998887 899999999999999999998877688999999887644322 3499999987654
Q ss_pred cccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.|-... -...+++.+++.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 433211 13579999999999999999987
No 222
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.29 E-value=5.3e-06 Score=89.84 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC----ccceeccCCCCceeeEe--cCHHHHHHHHHcc---
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMVG--- 414 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~--- 414 (883)
.++|..|.+.+++.| .++||.||.||+|.... .. |. ..|.+... .|+.+.|+ ..|++..-.+...
T Consensus 2 ~~~~~~l~~~l~~~f-~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~ 79 (261)
T cd00773 2 AALRRYIEDTLREVF-ERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSL 79 (261)
T ss_pred hHHHHHHHHHHHHHH-HHcCCEEeeccceeeHHHhcccccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccC
Confidence 367899999999999 68999999999997742 11 11 13554322 36778887 4455544332111
Q ss_pred CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 415 SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 415 ~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
.. -|+|++++|||.|.....|..||+|+++|+.+.+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC
Confidence 13 3999999999999988888899999999998775
No 223
>KOG3045|consensus
Probab=98.27 E-value=2.8e-06 Score=88.68 Aligned_cols=127 Identities=15% Similarity=0.254 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......++..+-. .+....|.|+|||.+.++. .....|+..|+-+. +-+++.+|+.+
T Consensus 165 ~nPld~ii~~ik~----r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~---------------~~~V~~cDm~~ 221 (325)
T KOG3045|consen 165 ENPLDVIIRKIKR----RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV---------------NERVIACDMRN 221 (325)
T ss_pred CChHHHHHHHHHh----CcCceEEEecccchhhhhh----ccccceeeeeeecC---------------CCceeeccccC
Confidence 3445556666532 2566789999999998875 22336999997421 22568889998
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+..+ ++.|++++..+|+-- ++..++.+++|+|||||.++|.+... ...+...+...+...|
T Consensus 222 vPl~d--~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~S-------------Rf~dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 222 VPLED--ESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKS-------------RFSDVKGFVRALTKLG 283 (325)
T ss_pred CcCcc--CcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhh-------------hcccHHHHHHHHHHcC
Confidence 77665 899999987776543 47889999999999999999998532 2224557899999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|.+.....
T Consensus 284 F~~~~~d~ 291 (325)
T KOG3045|consen 284 FDVKHKDV 291 (325)
T ss_pred Ceeeehhh
Confidence 99876543
No 224
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.27 E-value=6.4e-06 Score=93.44 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
+......+++.+..... ..+.+|||++||+|.++..+ +.++.+|+|+|.|+.+++.|++++..++..+++++.+|+.
T Consensus 188 N~~~~e~l~~~v~~~~~--~~~~~vLDl~~G~G~~sl~l-a~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 188 NAAVNEKMLEWALDATK--GSKGDLLELYCGNGNFTLAL-ARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCeEEEEeccccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 34445555555533221 12357999999999999855 4556689999999999999999988776667789999987
Q ss_pred CCCCCc--------------CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 194 DFKPED--------------LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 194 ~~~~~~--------------~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
++.... ...+||+|+...-=.-+ ...+++.+. +|++.++++.... ..
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~---~~~~ivyvSC~p~------------tl 325 (362)
T PRK05031 265 EFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL----DDETLKLVQ---AYERILYISCNPE------------TL 325 (362)
T ss_pred HHHHHHhhcccccccccccccCCCCCEEEECCCCCCC----cHHHHHHHH---ccCCEEEEEeCHH------------HH
Confidence 642110 01258999987642222 124444443 3788888887321 11
Q ss_pred cccchhhhhhhhhcccccccccCCCCCc
Q psy8372 260 VRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..++..+. + ||++.....-..||
T Consensus 326 ---arDl~~L~-~-gY~l~~v~~~DmFP 348 (362)
T PRK05031 326 ---CENLETLS-Q-THKVERFALFDQFP 348 (362)
T ss_pred ---HHHHHHHc-C-CcEEEEEEEcccCC
Confidence 22444444 3 89998888888887
No 225
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.26 E-value=4.3e-06 Score=96.88 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCChHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g-----~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+..|||||||+|.++...+..+ ..+|++|+-++.++...++++..+ -.+.++++.+|+.++..+. +.|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe---kvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE---KVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS----EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC---ceeEEE
Confidence 5689999999999987666654 348999999999888877764444 3466899999999987655 899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
|-.+=....+|-....|..+.|.|||||.++=
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 96654444345466788999999999988653
No 226
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.25 E-value=4.7e-06 Score=88.12 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh---ccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK---DCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..+.+|||+|||+|.++..++..|..+|+|+|+++.|+....+.... ....+++ ..+..++.+.- ..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d~--~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPDF--ATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCCc--eeeeEEEe
Confidence 35779999999999999999888877899999999888762222111 0111111 11222222111 35776666
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. ..+..+.++|+| |.+++-.
T Consensus 150 S~~----------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 150 SLI----------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ehH----------hHHHHHHHHhCc-CeEEEEc
Confidence 543 256779999999 7666543
No 227
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.25 E-value=1.4e-05 Score=91.10 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=49.5
Q ss_pred cccCcCCCCCCChhhhccCCCCccceeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 752 AHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 752 ~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
+.+|||.|. .-.|+.++|. ||+|.++ -+| ++++..|++++.+. |
T Consensus 270 s~fPftePs----------------~evdi~~~g~WiEi~gcG~--v~p----~vl~~~g~~~~~~~--------g---- 315 (460)
T TIGR00469 270 AYFPFTAPS----------------WEIEIWFKDEWLELCGCGI--IRH----DILLRAGVHPSETI--------G---- 315 (460)
T ss_pred ccCCCCCcc----------------eEEEEEECCeeEEEeeecc--CcH----HHHHHcCCCccceE--------E----
Confidence 368999873 4578888986 9999886 233 35566688765321 1
Q ss_pred cceeccHHHHHHHHhCCCCcccc
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdv 852 (883)
--||||||||+|++.|+++||..
T Consensus 316 ~AfGiGleRlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 316 WAFGLGLDRIAMLLFDIPDIRLF 338 (460)
T ss_pred EEEEecHHHHHHHHcCccHHHHH
Confidence 15899999999999999999864
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.22 E-value=1.1e-05 Score=82.71 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
...-..+.+++++.........+.+++|||+|.|.-+..++-..+. +++.+|.+..-+...+......+..++++++..
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R 106 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR 106 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-
T ss_pred HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee
Confidence 3455567788888655444334448999999999999888777666 899999999998888888887778888999999
Q ss_pred CCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++.. ...+||+|++..+-. +..++.-+...|++||.+++.-
T Consensus 107 ~E~~~---~~~~fd~v~aRAv~~------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 107 AEEPE---YRESFDVVTARAVAP------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHTT---TTT-EEEEEEESSSS------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ecccc---cCCCccEEEeehhcC------HHHHHHHHHHhcCCCCEEEEEc
Confidence 88821 236899999988732 5678899999999999988875
No 229
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.21 E-value=2.4e-06 Score=87.99 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+.+.+|||.+.|-|+++...+++|..+|.-++.++..++.|.-+=-.. ....++.+.+|+.+.-....+++||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 568999999999999999999999878999999999999997653322 122457788888776555445789999853
Q ss_pred cc-ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WV-LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~v-L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.- +.+...=--..+-.+++|+|||||.++-..-..... +. -..-+......|+++||+++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---yr-----G~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---YR-----GLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---cc-----cCChhHHHHHHHHhcCceeeeeeh
Confidence 21 112111113478999999999999999877433211 11 011244778899999999775443
No 230
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.21 E-value=1.3e-05 Score=86.82 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccE
Q psy8372 108 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187 (883)
Q Consensus 108 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~ 187 (883)
++..-.+......+++.+. ..++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++.. ..++++
T Consensus 8 GQnfl~d~~~~~~iv~~~~-----~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~i 79 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE-----DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEI 79 (258)
T ss_pred CccccCCHHHHHHHHHhcC-----CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEE
Confidence 3333345555666666542 2457899999999999999888874 4699999999999999988754 346788
Q ss_pred EEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 188 YNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 188 ~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+++|+.++... .||.|+++...+
T Consensus 80 i~~D~~~~~~~----~~d~Vv~NlPy~ 102 (258)
T PRK14896 80 IEGDALKVDLP----EFNKVVSNLPYQ 102 (258)
T ss_pred EEeccccCCch----hceEEEEcCCcc
Confidence 99999876532 489999987643
No 231
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.20 E-value=5.3e-06 Score=90.44 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||||||+|.++..++..+. +|+|+|+++.|++.++++... .+++++.+|+
T Consensus 26 ~~~~i~~~i~~~l~-----~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~ 96 (272)
T PRK00274 26 IDENILDKIVDAAG-----PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDA 96 (272)
T ss_pred CCHHHHHHHHHhcC-----CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChh
Confidence 34444555555442 24667999999999999998888865 699999999999999987642 4568899999
Q ss_pred CCCCCCcCCCCccEEEEccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++... -.+|.|+++..
T Consensus 97 ~~~~~~~--~~~~~vv~NlP 114 (272)
T PRK00274 97 LKVDLSE--LQPLKVVANLP 114 (272)
T ss_pred hcCCHHH--cCcceEEEeCC
Confidence 8875433 11588888754
No 232
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.17 E-value=7.3e-06 Score=90.78 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-cC-CCccEEE-ccCCCCCCC--cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CD-KLDKCYN-VGIQDFKPE--DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~~-~~~~~~~-~d~~~~~~~--~~~~~FDlV 207 (883)
.+.+|||||||+|.....++.+.+. +++|+|+++.+++.|++++..+ .. ..+.+.. .+..++... ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999887766655433 7999999999999999999876 23 3344433 333332211 113589999
Q ss_pred EEccccccc
Q psy8372 208 WIQWVLMFI 216 (883)
Q Consensus 208 vs~~vL~hl 216 (883)
+|+.-++--
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999887644
No 233
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.17 E-value=9.4e-06 Score=86.89 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~ 193 (883)
....++..+... .+..+|||||+++|.-+.+++..... +|+.+|.++...+.|++.+...+ ...++++.+++.
T Consensus 66 ~~g~lL~~l~~~----~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 66 DEGQFLNMLLKL----INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 344555555432 34569999999999999877765322 79999999999999999998775 456788888877
Q ss_pred CCCCCc-----CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 194 DFKPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 194 ~~~~~~-----~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
+..+.. ..++||+|+.-.- .+.+...+..+.+.|+|||.+++....+++.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~ 196 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLWNGS 196 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCc
Confidence 653321 1258999998643 2446788899999999999988876655543
No 234
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.17 E-value=1.7e-05 Score=89.65 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=86.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-----C---------C
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-----L---------N 201 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-----~---------~ 201 (883)
.+|||+|||+|.++..++ .++.+|+|+|+++.|++.|++++..++..+++++.+|+.++.... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999998554 445689999999999999999998776666789999987643210 0 0
Q ss_pred CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 202 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
..||+|+...-=.-+ ...+++.+. +|++.++++.... .. ..++..+. .||++....
T Consensus 278 ~~~d~v~lDPPR~G~----~~~~l~~l~---~~~~ivYvsC~p~------------tl---aRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL----DPDTCKLVQ---AYERILYISCNPE------------TL---KANLEQLS--ETHRVERFA 333 (353)
T ss_pred CCCCEEEECCCCCCC----cHHHHHHHH---cCCcEEEEEcCHH------------HH---HHHHHHHh--cCcEEEEEE
Confidence 138999986642111 123444443 4788888887321 11 22444443 248888888
Q ss_pred CCCCCc
Q psy8372 282 KGEFSP 287 (883)
Q Consensus 282 ~~~~~P 287 (883)
.-..||
T Consensus 334 ~~DmFP 339 (353)
T TIGR02143 334 LFDQFP 339 (353)
T ss_pred EcccCC
Confidence 777776
No 235
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=1.4e-05 Score=86.20 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChH----HHHHHHhC-----CC-eEEEEeCCHHHHHHHHHHHhh-------------------cc---
Q psy8372 134 GKTRVLDVGAGIGRI----SKYLLAKH-----FD-KIDLLEQSSKFIEQAKEEILK-------------------DC--- 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~----~~~l~~~g-----~~-~V~gvD~S~~~le~A~~~~~~-------------------~~--- 181 (883)
..-||.-+||+||.- +..+...+ .. +|+|+|+|..+++.|+.-.=. ..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367999999999963 32222322 22 799999999999999752100 00
Q ss_pred -------CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 182 -------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 182 -------~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.|-+.|+.+-.+ ..+.||+|+|.+||-++..+....++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1234566666665443 2368999999999999988888999999999999999999976
No 236
>KOG2904|consensus
Probab=98.16 E-value=2.6e-05 Score=82.39 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEE----ccCCCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYN----VGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~----~d~~~~~~~~~~~~FDlV 207 (883)
.+..+||+|||+|..+..++..-++ .|+++|.|+.++..|.+++.... .+.+..+. .|..+..+ ...+++|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-cccCceeEE
Confidence 3457999999999999988776555 89999999999999999988763 33344443 33332222 224789999
Q ss_pred EEcccccccCh--------------------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILD--------------------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~d--------------------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+.- ++.. +.+..++.-+.|.|+|||.+.+...
T Consensus 227 vsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99863 2211 1356677888999999999999874
No 237
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=1.3e-05 Score=88.31 Aligned_cols=109 Identities=17% Similarity=-0.014 Sum_probs=85.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+|..|||-=||||.++..+.-.|.. ++|.|++..|++-|+.|+...+.....++.. |+..++... .++|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~--~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRD--NSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCC--CccceEEec
Confidence 367889999999999999877666765 9999999999999999998775444445555 888887544 479999985
Q ss_pred cccc------ccC-hHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLM------FIL-DEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~------hl~-ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.-.- -.. ++-+..+|+.++++||+||++++..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4221 111 23478999999999999999999884
No 238
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.15 E-value=5.1e-06 Score=84.21 Aligned_cols=113 Identities=26% Similarity=0.352 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEcCCeeccCC-C--CCC------ccceeccCCCCceeeEecCHH--H---HHHHHHc-
Q psy8372 350 FRSKFLMRTREFLAT-HRDFVEVETPTLFKRT-P--GGA------REFVVPTHEPNKFYSLVQSPQ--Q---LKQLLMV- 413 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~-~~gF~EV~TP~l~~~~-~--~ga------~~f~v~~~~~~~~~~L~~Spq--l---~kq~l~~- 413 (883)
++++|.+.+++.+ . +.||.||.||+|.+.. . .|. ..|.+... .+..++|+.+.. + ++.....
T Consensus 1 l~~~l~~~~~~~~-~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~-~~~~~~L~pt~~~~~~~~~~~~~~~~ 78 (173)
T PF00587_consen 1 LRNALERFIREEF-VLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDR-GDEEYCLRPTSEPGIYSLFKNEIRSS 78 (173)
T ss_dssp HHHHHHHHHHHHH-HHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEET-TTEEEEE-SSSHHHHHHHHHHHEEBH
T ss_pred CHHHHHHHHHHHh-HHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeec-ccccEEeccccccceeeeecceeeec
Confidence 5789999999999 6 7999999999998752 1 121 12444322 235688974443 2 3332211
Q ss_pred -cCCC-cEEEEeeceecCC-C--CCCCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 414 -GSVD-RYFQIARCYRDES-T--RPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~-~--~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
..+. |+|+||+|||+|. . .-.|..||+|.|++....+ ++..+..++++..+
T Consensus 79 ~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~ 134 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELY 134 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred cccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHH
Confidence 1233 9999999999994 2 3466699999999998888 78777777777654
No 239
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.13 E-value=7.7e-06 Score=88.30 Aligned_cols=127 Identities=18% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCCCCceeeEecCHH-----HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHEPNKFYSLVQSPQ-----QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~~~~~~~L~~Spq-----l~kq~l 411 (883)
.-.+++.+|.+.+++.| .+.||.||.||+|.... ..|. . -|.+... .+..++|+...+ ++...+
T Consensus 29 ~g~~l~~~i~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~-~~~~l~LrPt~e~~~t~~~~~~i 106 (255)
T cd00779 29 LGLRVLKKIENIIREEM-NKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDR-HGKEFLLGPTHEEVITDLVANEI 106 (255)
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecC-CCCeEEEecCCcHHHHHHHHhcc
Confidence 34568899999999999 67899999999997631 1122 1 2554322 245678864322 333332
Q ss_pred Hc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHHH---HHhccCCCCce
Q psy8372 412 MV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLNIPTRTFS 474 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~~~~~~f~ 474 (883)
.. ..+. |+|++++|||+| ..... |..||+|.|++..+.+..+..+..++++. .+++.+.-||.
T Consensus 107 ~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~ 177 (255)
T cd00779 107 KSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFV 177 (255)
T ss_pred ccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 11 1234 999999999999 55555 88999999999988877666665555543 34444433443
No 240
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.12 E-value=4.9e-06 Score=85.23 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQ 193 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~ 193 (883)
......++..+... .-.+.+|||+-||+|.++..++++|+.+|+.||.++.++...++++...... ....+..|+.
T Consensus 26 drvrealFniL~~~---~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 26 DRVREALFNILQPR---NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp HHHHHHHHHHHHCH----HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred HHHHHHHHHHhccc---ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 34445555555321 0258899999999999999999999999999999999999999998876443 3567777754
Q ss_pred CCCCC--cCCCCccEEEEcccccccChHHHHHHHHHHH--HHhccCcEEEEEeccc
Q psy8372 194 DFKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 245 (883)
Q Consensus 194 ~~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~ 245 (883)
..... ....+||+|++..-...-. ....++..+. .+|+++|.+++.....
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHhhcccCCCceEEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 43211 1236899999987544331 1356777776 7899999999987543
No 241
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.11 E-value=2.3e-06 Score=97.53 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE--EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI--DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V--~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
...+.|+.++........-..+||||||+|.++.+++.++.-.+ ..-|..+.+++.|.++..-.. +-......
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~-----~~~~~s~r 174 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAM-----IGVLGSQR 174 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchh-----hhhhcccc
Confidence 33444555543221212224689999999999999999876522 223666778888877643221 01112234
Q ss_pred CCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 195 ~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++.+. ++||+|.|+.++-.....+ ..+|-++-|+|+|||+++.+.+..
T Consensus 175 LPfp~--~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 175 LPFPS--NAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccCCc--cchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcc
Confidence 44444 7999999988887665432 468999999999999999987543
No 242
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.10 E-value=1.3e-05 Score=88.18 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEcc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVG 191 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d 191 (883)
.+......+++... ..++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.... ..+++++.+|
T Consensus 20 ~d~~i~~~Iv~~~~-----~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEKAA-----IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34555555555442 24677999999999999998887754 59999999999999999887543 4567899999
Q ss_pred CCCCCCCcCCCCccEEEEcccc
Q psy8372 192 IQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 192 ~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+..... ..||+|+++...
T Consensus 94 al~~~~----~~~d~VvaNlPY 111 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPY 111 (294)
T ss_pred Hhhhcc----cccCEEEecCCc
Confidence 987543 368999886544
No 243
>PRK04148 hypothetical protein; Provisional
Probab=98.10 E-value=2e-05 Score=76.03 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCh-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|. ++..+.+.|. +|+++|+++..++.|+++.. .++..|+.+..+.- -+.+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~-------~~v~dDlf~p~~~~-y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGL-------NAFVDDLFNPNLEI-YKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCC-------eEEECcCCCCCHHH-HhcCCEEEEeCC
Confidence 45799999999996 8877776666 59999999999999977642 57888888765432 257999998653
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..++...+.++++.+ |.-++|.....+
T Consensus 87 -----p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 87 -----PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred -----CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 344556666666544 456777765443
No 244
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=98.09 E-value=1.7e-06 Score=84.23 Aligned_cols=47 Identities=53% Similarity=0.916 Sum_probs=43.9
Q ss_pred ccccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 9 RSHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 9 r~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
+||+|+++..++.|++|+++|||++.|+ .+|++|||.+|.+|+++..
T Consensus 1 ~~~~~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~ 50 (135)
T cd04317 1 RTHYCGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDP 50 (135)
T ss_pred CceehhhCChhHCCCEEEEEEeEehhcccCCEEEEEEecCCeeEEEEEeC
Confidence 5899999999999999999999999999 6999999999999999854
No 245
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.07 E-value=1.8e-05 Score=90.09 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.+++++..++.....+...|+..+... .+.||+|++..-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ERKFDVVDIDPF- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cCCCCEEEECCC-
Confidence 468999999999999988765 4348999999999999999998876655556888888665332 247999999752
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-. ...++..+.+.+++||.++++.
T Consensus 135 -Gs----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GS----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence 22 3468888788899999999984
No 246
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.1e-05 Score=92.37 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCCc-cc--eecc-C--CCCceeeEe---cCHHH--HHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGAR-EF--VVPT-H--EPNKFYSLV---QSPQQ--LKQ 409 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga~-~f--~v~~-~--~~~~~~~L~---~Spql--~kq 409 (883)
-.-...+..|...+|+-+ ++.||.||.||++.... . .|.. .. +-.| + ..+..+.|+ ++|=. +.+
T Consensus 15 p~d~~~~~~i~~~~~~v~-~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~e 93 (429)
T COG0124 15 PEDMALREYIESTIRKVF-ESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAE 93 (429)
T ss_pred hHHHHHHHHHHHHHHHHH-HHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHh
Confidence 445678999999999999 78999999999997642 1 1222 10 1111 1 246778887 77731 221
Q ss_pred H-HHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 410 L-LMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 410 ~-l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
- +...---|.|+++||||.|.++..|..||+|+++|..+.+ -.|++.++-+++..+
T Consensus 94 n~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 94 NKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred ccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 1 1112123999999999999999999999999999999876 578888777777654
No 247
>PLN02823 spermine synthase
Probab=98.07 E-value=2.4e-05 Score=87.43 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
...+||.+|+|.|..+..+++.. ..+|+.||+++.+++.|++.+... ...+++++..|...+.... .++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 45699999999999998888753 458999999999999999987543 2456788888887764322 46899999
Q ss_pred Ecccc-------cccChHHHHHHHH-HHHHHhccCcEEEEEe
Q psy8372 209 IQWVL-------MFILDEDIIKFLN-LCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL-------~hl~ded~~~~l~-~~~r~LKPGG~lvi~~ 242 (883)
+...= .++- -..+++ .+++.|+|||.+++..
T Consensus 182 ~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEEEec
Confidence 86311 1111 236787 8999999999987754
No 248
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.05 E-value=3e-05 Score=83.60 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||+|||+|.++..++..+. .|+++|+++.+++.++++... ..+++++.+|+
T Consensus 13 ~d~~i~~~i~~~~~-----~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~ 84 (253)
T TIGR00755 13 IDESVIQKIVEAAN-----VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDA 84 (253)
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECch
Confidence 34555555655552 24577999999999999998888775 499999999999999987643 34567889998
Q ss_pred CCCCCCcCCCCcc---EEEEccccccc
Q psy8372 193 QDFKPEDLNIKYD---VIWIQWVLMFI 216 (883)
Q Consensus 193 ~~~~~~~~~~~FD---lVvs~~vL~hl 216 (883)
.+++.. .|| +|+++.. .|+
T Consensus 85 ~~~~~~----~~d~~~~vvsNlP-y~i 106 (253)
T TIGR00755 85 LKVDLP----DFPKQLKVVSNLP-YNI 106 (253)
T ss_pred hcCChh----HcCCcceEEEcCC-hhh
Confidence 876543 355 7776654 344
No 249
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.05 E-value=3.4e-05 Score=81.33 Aligned_cols=109 Identities=25% Similarity=0.294 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc-------------cceeccCCCCceeeEe--cCHHHHHHHHHccCC
Q psy8372 353 KFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR-------------EFVVPTHEPNKFYSLV--QSPQQLKQLLMVGSV 416 (883)
Q Consensus 353 ~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~-------------~f~v~~~~~~~~~~L~--~Spql~kq~l~~~~~ 416 (883)
++.+.+|++| ...||.||.|+.++... .-..- .+.+. ++- .-+|+ ..|.+.+.+..-..-
T Consensus 5 ~~~~~ir~~L-~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~--NP~-~~~LR~sLlp~LL~~l~~N~~~ 80 (218)
T cd00496 5 KVIEEIEDIF-VSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN--DPA-RLLLRTHTSAVQARALAKLKPP 80 (218)
T ss_pred HHHHHHHHHH-HHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC--CCc-eEEEeccCcHHHHHHHHhcCCC
Confidence 5677889999 58999999999997652 11110 01111 111 23566 445555443211134
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
-|+||||+|||.+..+..|.|||+|+++.+++. |+.|++..+|+++..+
T Consensus 81 ~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 81 IRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred eeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 599999999999876656678999999999998 8999999999999765
No 250
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.03 E-value=2.4e-05 Score=84.89 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-------ccceeccCCC---CceeeEecCHH-----HHH
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-------REFVVPTHEP---NKFYSLVQSPQ-----QLK 408 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-------~~f~v~~~~~---~~~~~L~~Spq-----l~k 408 (883)
-.+++.+|.+.+++.+ .+.||.||.||.|.... ..|. ..|.+..... +..++|+...+ ++.
T Consensus 31 g~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~ 109 (264)
T cd00772 31 AKAILDKIENVLDKMF-KEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAA 109 (264)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHH
Confidence 3468899999999999 67899999999997742 1121 1244432221 15678863322 233
Q ss_pred HHHHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCC-CCceee
Q psy8372 409 QLLMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPT-RTFSRI 476 (883)
Q Consensus 409 q~l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~-~~f~ri 476 (883)
..+.. ..+. |+|++++|||+|... .. |..||+|.|.+..+.+.++..+.++.++ ..++..+. .||..+
T Consensus 110 ~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~ 186 (264)
T cd00772 110 KFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEG 186 (264)
T ss_pred hhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 32211 2334 999999999999544 33 6789999999987788888888888777 44554444 444433
No 251
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.02 E-value=2.9e-05 Score=89.32 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC-------ccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA-------REFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+..-.+++..+...+++.| .++||.||.||+|.... . .|. ..|.+.- ..|+.+.|+ ..+++....
T Consensus 10 ~p~~~~~~~~i~~~i~~~f-~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpD~T~~iaR~~ 87 (397)
T TIGR00442 10 LPEEMIKWQYIEETIREVF-ELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKD-KGGRSLTLRPEGTAPVARAV 87 (397)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEecCcccchHHHhhhccCccccccccceEEEEC-CCCCEEeecCCCcHHHHHHH
Confidence 3455678999999999999 68999999999996542 1 111 1244322 236777887 445555543
Q ss_pred HHcc---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 411 LMVG---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 411 l~~~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
+... .+ -|+|++++|||.|..+..|..||+|+++|+.+.+
T Consensus 88 ~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 88 IENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred HhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC
Confidence 2211 12 3999999999999998888999999999998876
No 252
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.02 E-value=4e-05 Score=75.54 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlV 207 (883)
..+.-|||+|.|||.++..++++|.. .+++++.|++.+....+..... +++.+|+.++.. ...+..||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~-----~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV-----NIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc-----cccccchhhHHHHHhhcCCCeeeeE
Confidence 45678999999999999999999876 8999999999999998877643 467777766541 1223579999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|.--+-.++-....++++.+...|.+||.++--...
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9988888887766789999999999999998877643
No 253
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.02 E-value=2.2e-05 Score=83.29 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-Cc-----cceeccCC---CCceeeEe--cCHHHH---HHH
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-AR-----EFVVPTHE---PNKFYSLV--QSPQQL---KQL 410 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-a~-----~f~v~~~~---~~~~~~L~--~Spql~---kq~ 410 (883)
.+++..|.+.+++.| .+.||.||.||+|.... .+| .. .|.+.... .+..++|+ ..+.++ .+.
T Consensus 2 ~~~~~~l~~~~~~~~-~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRM-AEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 357889999999999 68999999999997652 233 11 23333211 04667886 233333 221
Q ss_pred HHc-cCCC-cEEEEeeceecCCCC---CCCCcceecccccccCCC
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTR---PDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~---~~r~~EFt~le~e~~~~~ 450 (883)
... ..+. |+|++++|||+|... -.|..||+|.|+|....+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 111 1232 899999999999886 457789999999997765
No 254
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.01 E-value=3.1e-05 Score=89.41 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-------CccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-------AREFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-------a~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+..-.+.+..+...+|+.| .++||.||.||++.... .+| ..-|.+.. ..|+.+.|+ ..|++....
T Consensus 14 ~p~~~~~~~~i~~~i~~~~-~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d-~~g~~l~LRpd~T~~~ar~~ 91 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVF-ERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQD-KGGRSLTLRPEGTAPVVRAV 91 (412)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeEeeccccchHHHhccccCcccccccceeEEEEc-CCCCEEEecCCCcHHHHHHH
Confidence 3555678899999999999 68999999999995531 111 11244432 236778887 456565554
Q ss_pred HHcc-CCCcEEEEeeceecCCCCCCCCcceecccccccCCCH----HHHHHHHHHH
Q psy8372 411 LMVG-SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR----DDVMRLIEEL 461 (883)
Q Consensus 411 l~~~-~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~----~dvm~~~E~l 461 (883)
+... .--|+|++++|||+|..+..|..||+|+++|+...+- .|++.++.++
T Consensus 92 ~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~ 147 (412)
T PRK00037 92 IEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADI 147 (412)
T ss_pred HhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHH
Confidence 3212 2249999999999999888888999999999977652 4444444433
No 255
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.01 E-value=3.6e-05 Score=79.58 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~vL 213 (883)
..++|||||=+...... ....+ .|+.||+.+.- -...+.|+.+.+.+ ...++||+|+++.||
T Consensus 52 ~lrlLEVGals~~N~~s-~~~~f-dvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS-TSGWF-DVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc-ccCce-eeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 47999999986665432 12233 49999987521 13577788776532 224799999999999
Q ss_pred cccCh-HHHHHHHHHHHHHhccCcE-----EEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 214 MFILD-EDIIKFLNLCKQILNKNGI-----IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 214 ~hl~d-ed~~~~l~~~~r~LKPGG~-----lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
.++|+ .+...+++++++.|+|+|. |++..+... ...+.+.+.+.|..+++..||..++.+...
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--------v~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--------VTNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--------hhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 99996 5677999999999999999 888876432 234556678899999999999999876554
No 256
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.00 E-value=8.8e-05 Score=80.02 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh----c----------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK----D---------------------------- 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~----~---------------------------- 180 (883)
....+||--|||.|+++-.++..|+. +.|.|.|--|+-...=.+.. .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999986 99999999997654432211 0
Q ss_pred --------cCCCccEEEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc
Q psy8372 181 --------CDKLDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251 (883)
Q Consensus 181 --------~~~~~~~~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~ 251 (883)
.........+|+.+.-... ..++||+|+...-+.-. +++...|..+.++|||||+.+-..+..-.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 0011122233333322111 12689999998766666 449999999999999999766655432211110
Q ss_pred ccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 252 ~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
-.....+...+.+++..+.+..||+++..+..
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 01122345667889999999999999877663
No 257
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.97 E-value=3.8e-05 Score=92.20 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC------CccceeccCCCCceeeEecCHH-----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG------AREFVVPTHEPNKFYSLVQSPQ-----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g------a~~f~v~~~~~~~~~~L~~Spq-----l~kq~ 410 (883)
-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..| ..-|.+... .+..++|+...+ ++...
T Consensus 44 P~g~~~~~~i~~~i~~~~-~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~-~~~~l~LrPt~e~~~~~~~~~~ 121 (565)
T PRK09194 44 PLGLRVLRKIENIVREEM-NKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDR-HGRDFVLGPTHEEVITDLVRNE 121 (565)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECcccCcHHHHhhcCCccccchhceEEecC-CCCEEEECCCChHHHHHHHHhh
Confidence 344678999999999999 68999999999997641 112 123554322 256788874222 33433
Q ss_pred HHc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCCCCcee
Q psy8372 411 LMV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPTRTFSR 475 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~~~f~r 475 (883)
+.. ..+. |+|||++|||+| ..+.. |..||+|.|.|....+.++.....++++ ..+++.+.-||..
T Consensus 122 ~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~ 194 (565)
T PRK09194 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRA 194 (565)
T ss_pred hhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEE
Confidence 221 1232 999999999999 55555 8899999999998887666555555555 5555555445443
No 258
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.97 E-value=5.6e-05 Score=88.11 Aligned_cols=112 Identities=16% Similarity=0.065 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE--
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW-- 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv-- 208 (883)
.++.+|||++||.|.=+.+++.... ..|+++|+++.-++..++++...+..++.+...|...+.... .+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~-~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL-PETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc-hhhcCeEEEc
Confidence 5788999999999999888887642 279999999999999999998877777777778877653221 35799999
Q ss_pred --Ecc--cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 --IQW--VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 --s~~--vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
|+. ++..-++ + -..++|..+.++|||||+|+-++++-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 432 2222111 1 12678999999999999998888653
No 259
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.95 E-value=3.3e-05 Score=92.25 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC------CccceeccCCCCceeeEecC-HH----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG------AREFVVPTHEPNKFYSLVQS-PQ----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g------a~~f~v~~~~~~~~~~L~~S-pq----l~kq~ 410 (883)
-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..| ...|.+..+ .+..++|+.. -+ ++.+.
T Consensus 44 P~g~rv~~~I~~~i~~~~-~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr-~~~~l~LrPT~Ee~~t~~~~~~ 121 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEM-NKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDR-KGREFVLGPTHEEVITDLARNE 121 (568)
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecC-CCCEEEEcCCCcHHHHHHHHHH
Confidence 344678999999999999 68999999999997741 112 223655433 3567888743 22 23433
Q ss_pred HHc-cCCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHhccCCCCce
Q psy8372 411 LMV-GSVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCLNIPTRTFS 474 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~~~~~~~f~ 474 (883)
+.. ..+. |+|||++|||+| ..+.. |..||+|.|.|....+.++.....+.++ ..+++.+.-||.
T Consensus 122 i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~ 193 (568)
T TIGR00409 122 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFR 193 (568)
T ss_pred HhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 221 2344 999999999999 65555 8899999999999888777666666554 556555544444
No 260
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.95 E-value=4.7e-05 Score=77.79 Aligned_cols=100 Identities=16% Similarity=0.014 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-e---------EEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-K---------IDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~---------V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 201 (883)
.++..|||--||+|.+....+..+.. . +.|.|+++.+++.|++++...+. ..+.+.+.|+.+++.. +
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~--~ 104 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP--D 104 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT--T
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc--c
Confidence 56789999999999999877665443 3 78999999999999999987643 3457888899888733 3
Q ss_pred CCccEEEEcccccc-cCh-----HHHHHHHHHHHHHhcc
Q psy8372 202 IKYDVIWIQWVLMF-ILD-----EDIIKFLNLCKQILNK 234 (883)
Q Consensus 202 ~~FDlVvs~~vL~h-l~d-----ed~~~~l~~~~r~LKP 234 (883)
+++|.|+++.-.-. +.. +-+..+++++.++|++
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 68999999775432 111 2256778899999998
No 261
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.94 E-value=5.1e-05 Score=88.15 Aligned_cols=117 Identities=17% Similarity=0.276 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-C------ccceeccCCCCceeeEe--cCHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-A------REFVVPTHEPNKFYSLV--QSPQQLKQL 410 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-a------~~f~v~~~~~~~~~~L~--~Spql~kq~ 410 (883)
+-.-...|..|.+.+++.| ...||.||.||++.... ..| . .-|.+.. ..|..+.|+ -.|++..-.
T Consensus 14 lp~~~~~~~~i~~~i~~~~-~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d-~~g~~l~LRpd~T~~iaR~~ 91 (430)
T CHL00201 14 LPDEINYWQFIHDKALTLL-SLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTD-RSNRDITLRPEGTAGIVRAF 91 (430)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCeeecCcccchHHHHhcccCCcccccccceEEEEc-CCCCEEEeCCCCcHHHHHHH
Confidence 3445667999999999999 68999999999997641 112 2 1244422 236677887 444444332
Q ss_pred HHc----cCCC-cEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHH
Q psy8372 411 LMV----GSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELL 462 (883)
Q Consensus 411 l~~----~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li 462 (883)
+.. .... |.|++|+|||.|.+...|..||+|+++|+.+.+ -.|++.++-+.+
T Consensus 92 ~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l 152 (430)
T CHL00201 92 IENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIF 152 (430)
T ss_pred HHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHH
Confidence 111 1233 999999999999999999999999999998865 234555444444
No 262
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.93 E-value=1.6e-05 Score=86.12 Aligned_cols=128 Identities=10% Similarity=0.038 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC------ccceeccCCC---CceeeEecCHH-----HH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA------REFVVPTHEP---NKFYSLVQSPQ-----QL 407 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga------~~f~v~~~~~---~~~~~L~~Spq-----l~ 407 (883)
.-.+++.+|.+.+++.+ .+.||.||.||.|.... . +|. .-|.+..... +..++|+...+ ++
T Consensus 30 ~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~ 108 (261)
T cd00778 30 YGYAIWENIQKILDKEI-KETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMF 108 (261)
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHH
Confidence 44578899999999999 68999999999997652 1 221 1244432211 23578874422 23
Q ss_pred HHHHHc-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccC-CCCce
Q psy8372 408 KQLLMV-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIP-TRTFS 474 (883)
Q Consensus 408 kq~l~~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~-~~~f~ 474 (883)
+..+.. ..+. |+|||++|||+|...+ .|..||+|.|.+..+.+.+++.+..++++.. |+..+ .-||.
T Consensus 109 ~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~ 184 (261)
T cd00778 109 SKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVV 184 (261)
T ss_pred HhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 333211 1233 8999999999999774 3558999999999999988888888877653 44443 44443
No 263
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.92 E-value=2.4e-05 Score=84.49 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC--eEEEcCCeeccCCCCCCccceecc---CCCCceeeEe--cCHH---HHHHHHHcc-
Q psy8372 346 HNLRFRSKFLMRTREFLATHRD--FVEVETPTLFKRTPGGAREFVVPT---HEPNKFYSLV--QSPQ---QLKQLLMVG- 414 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~g--F~EV~TP~l~~~~~~ga~~f~v~~---~~~~~~~~L~--~Spq---l~kq~l~~~- 414 (883)
.-.+++.+|.+.+|+.| ...| |.||.||+|... .-|.+.. ...+..++|+ +.|. .++......
T Consensus 30 ~g~~l~~~i~~~~~~~~-~~~g~~~~~i~tP~i~~~-----~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 30 LGVELKNNIKSAWRKSF-VLEEEDMLEIDSPIITPE-----LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred hHHHHHHHHHHHHHHHH-HhcCCCeEEEeccccCCH-----HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 34578999999999999 5675 999999999764 2344321 1123456775 3432 244433222
Q ss_pred -CCC-cEEEEeeceecCCCCC---CCCcceecccccccCC
Q psy8372 415 -SVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFT 449 (883)
Q Consensus 415 -~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~ 449 (883)
.+. |+||||+|||+|.+.. .|..||||.|+|.-..
T Consensus 104 ~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 233 9999999999998765 6779999999999553
No 264
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.91 E-value=8.3e-05 Score=82.50 Aligned_cols=110 Identities=14% Similarity=0.005 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHhhccCCCc--cEEEccCCCCC---C-CcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-----FDKIDLLEQSSKFIEQAKEEILKDCDKLD--KCYNVGIQDFK---P-EDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-----~~~V~gvD~S~~~le~A~~~~~~~~~~~~--~~~~~d~~~~~---~-~~~~ 201 (883)
+++..|+|+|||+|.=+..++... ...++++|+|..+++.+.+++.....+.+ ..+++|..+.. + ....
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 466789999999999776665432 22699999999999999999883322322 34677765431 1 1112
Q ss_pred CCccEEEE-cccccccChHHHHHHHHHHHH-HhccCcEEEEEe
Q psy8372 202 IKYDVIWI-QWVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIKD 242 (883)
Q Consensus 202 ~~FDlVvs-~~vL~hl~ded~~~~l~~~~r-~LKPGG~lvi~~ 242 (883)
....+++. ..++..+++++...+|+++++ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 34566665 558999988889999999999 999999998865
No 265
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.89 E-value=9.8e-05 Score=80.61 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCcc-EEEccCC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDK-CYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~-~~~~d~~ 193 (883)
.....+.++.... ..-...+|||+|||+|..+-.+... ...+++++|.|+.|++.++............ .......
T Consensus 17 ~~~~vl~El~~r~-p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 17 AVYRVLSELRKRL-PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHHhC-cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc
Confidence 3444555554332 2234569999999999866433322 2348999999999999999876644221111 1111111
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
+.... ...|+|+++++|..++++....+++.+.+.+.+ .|++.++.... ......+.++.+.+.
T Consensus 96 ~~~~~---~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~-----------Gf~~i~~aR~~l~~~ 159 (274)
T PF09243_consen 96 DFLPF---PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA-----------GFRRIAEARDQLLEK 159 (274)
T ss_pred ccccC---CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH-----------HHHHHHHHHHHHhhC
Confidence 11111 234999999999999887777888888777765 88888753221 122344677777777
Q ss_pred ccccccc
Q psy8372 274 NLKCVKS 280 (883)
Q Consensus 274 Gf~vv~~ 280 (883)
|+.++.-
T Consensus 160 ~~~v~AP 166 (274)
T PF09243_consen 160 GAHVVAP 166 (274)
T ss_pred CCceECC
Confidence 7777753
No 266
>KOG1331|consensus
Probab=97.88 E-value=1.4e-05 Score=85.33 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.....+.|+... +.+..+||+|||.|..+.. ... ..+.|.|.+...+..|++.... ....+|+.
T Consensus 32 ~Wp~v~qfl~~~-------~~gsv~~d~gCGngky~~~--~p~-~~~ig~D~c~~l~~~ak~~~~~------~~~~ad~l 95 (293)
T KOG1331|consen 32 PWPMVRQFLDSQ-------PTGSVGLDVGCGNGKYLGV--NPL-CLIIGCDLCTGLLGGAKRSGGD------NVCRADAL 95 (293)
T ss_pred ccHHHHHHHhcc-------CCcceeeecccCCcccCcC--CCc-ceeeecchhhhhccccccCCCc------eeehhhhh
Confidence 345677777777 5688999999999987641 111 1588999999999888765331 35778888
Q ss_pred CCCCCcCCCCccEEEEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..+... .+||.+++..++||+.. .....+++++.|+|+|||..++..+...
T Consensus 96 ~~p~~~--~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 96 KLPFRE--ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred cCCCCC--CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 777655 79999999999999975 4467899999999999999988876543
No 267
>KOG3420|consensus
Probab=97.88 E-value=1.4e-05 Score=76.64 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.++.++|+|||.|.++......+...|.|+|+.+.+++.+++++.+.... ++++++|+.+..+.. +.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~--g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKG--GIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhccC--CeEeeEEecCCC
Confidence 57899999999999996555556668999999999999999998876433 378999999887765 799999998766
Q ss_pred c
Q psy8372 214 M 214 (883)
Q Consensus 214 ~ 214 (883)
-
T Consensus 125 G 125 (185)
T KOG3420|consen 125 G 125 (185)
T ss_pred C
Confidence 3
No 268
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=6.4e-05 Score=81.94 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=83.4
Q ss_pred CeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+||-||.|.|.++..+++.. ..+++.||+++..++.|++.+.... ..+++.+..|..++.... .++||+|++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEc
Confidence 699999999999999888876 4489999999999999999887664 566788888887776544 2489999986
Q ss_pred ccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..=.--+.+. -..+++.++++|+++|.++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 5432111010 2589999999999999999884
No 269
>KOG3987|consensus
Probab=97.86 E-value=6.3e-06 Score=83.29 Aligned_cols=165 Identities=20% Similarity=0.216 Sum_probs=103.3
Q ss_pred ccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHh
Q psy8372 99 TIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 99 ~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~ 178 (883)
.++++.+ .+.+.-+...+.+.++.--. ......+.++||+|+|.|..+..+ +..+.+|++.+.|..|..+.+++.-
T Consensus 80 dING~lg-rGsMFifSe~QF~klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m-~p~feevyATElS~tMr~rL~kk~y 155 (288)
T KOG3987|consen 80 DINGFLG-RGSMFIFSEEQFRKLLVIGG--PAWGQEPVTLLDLGAGDGEITLRM-APTFEEVYATELSWTMRDRLKKKNY 155 (288)
T ss_pred ccccccc-cCceEEecHHHHHHHHhcCC--CccCCCCeeEEeccCCCcchhhhh-cchHHHHHHHHhhHHHHHHHhhcCC
Confidence 3444443 56666666665555544331 122344579999999999999855 4445679999999999888776522
Q ss_pred hccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhcc-CcEEEEEecccCCC---------
Q psy8372 179 KDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK-NGIIIIKDNVASGV--------- 248 (883)
Q Consensus 179 ~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKP-GG~lvi~~~~~~~~--------- 248 (883)
-.....++...+ -+||+|.|.++|....+ +-++++.++.+|+| .|+++++-...-..
T Consensus 156 ---------nVl~~~ew~~t~--~k~dli~clNlLDRc~~--p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~ 222 (288)
T KOG3987|consen 156 ---------NVLTEIEWLQTD--VKLDLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGL 222 (288)
T ss_pred ---------ceeeehhhhhcC--ceeehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCC
Confidence 111222222221 37999999999986644 78999999999999 88887754321111
Q ss_pred c----ccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 K----NEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~----~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
. ..+.....++......+..+|+.+||.+..=
T Consensus 223 ~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 223 PLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred cCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 0 0111111222222335677899999987643
No 270
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=4.2e-05 Score=90.39 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
....+||||||.|.++..++...++ .++|+|++...+..|.++....+..++.++..|+..+...-.++++|.|+.+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4567999999999999989888776 799999999999998888777666777777776643322222468999998765
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
=.|.... --..++..++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4443211 12479999999999999999987
No 271
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.86 E-value=7.9e-05 Score=82.37 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. .-|.+. ..+..++|+ .-|.+ |...
T Consensus 27 p~g~~l~~~l~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~ 103 (298)
T cd00771 27 PKGAIIRNELEDFLRELQ-RKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSK 103 (298)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhh
Confidence 344678899999999999 68999999999997752 1121 125553 224567886 22222 2322
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCC
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFT 449 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~ 449 (883)
... ..+. |+|++++|||+|.+.. .|..||+|.|+++...
T Consensus 104 ~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~ 148 (298)
T cd00771 104 PRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCT 148 (298)
T ss_pred ccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeC
Confidence 111 1233 9999999999998753 4668999999998644
No 272
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.83 E-value=5e-05 Score=86.16 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+|||+.||+|..+..++.+ |..+|+++|+++.+++.+++++..+....+.+++.|+..+.... ...||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-
Confidence 358999999999999999887 56789999999999999999998765555678888877654321 24799999866
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+ .. +..++..+.+.+++||.++++.
T Consensus 123 f-Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F-GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 2 33 3478999999999999999985
No 273
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.00011 Score=76.86 Aligned_cols=121 Identities=27% Similarity=0.270 Sum_probs=92.6
Q ss_pred ccchHHHHHHHHHHhhcccCCCC-CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEE
Q psy8372 112 DLDIQTSNQFLSSLYCQKKSDPG-KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189 (883)
Q Consensus 112 ~~~~~~~~~lL~~l~~~~~~~~~-~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~ 189 (883)
.......+.+++.+...... .. +.+++|||+|.|.-+..++-..++ +|+.+|....=+...+....+.+.+++++++
T Consensus 45 ~~~e~~~rHilDSl~~~~~~-~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~ 123 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYL-DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVH 123 (215)
T ss_pred CHHHHHHHHHHHHhhhhhcc-cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEeh
Confidence 34455667777777543222 22 579999999999999877644444 6999999998888888888877888889999
Q ss_pred ccCCCCCCCcCCCC-ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 190 VGIQDFKPEDLNIK-YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 190 ~d~~~~~~~~~~~~-FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.++++.... . ||+|+|..+. .+..++.-+..++|+||.++..-
T Consensus 124 ~RaE~~~~~~---~~~D~vtsRAva------~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 124 GRAEEFGQEK---KQYDVVTSRAVA------SLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred hhHhhccccc---ccCcEEEeehcc------chHHHHHHHHHhcccCCcchhhh
Confidence 9999887644 3 9999998763 25667888999999999876544
No 274
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00028 Score=66.51 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=70.1
Q ss_pred EEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCC--CCCCcCCCCccEEEEccc
Q psy8372 138 VLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQD--FKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~--~~~~~~~~~FDlVvs~~v 212 (883)
+||+|||+|..+ .+..... ..++|+|+++.++..++..... .... +.+...+... .+... ...||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED-SASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC-CCceeEEeeeee
Confidence 999999999976 2333332 2589999999999996655432 2111 3566666655 22221 137999944444
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.++. . ....+.++.+.|+|+|.+++......
T Consensus 129 ~~~~-~--~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLL-P--PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcC-C--HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444 3 67899999999999999999886543
No 275
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.80 E-value=8.7e-05 Score=82.64 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC----CCC---ccceeccCCCCceeeEe--cCHHHHHHHHHc-c
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP----GGA---REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-G 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~----~ga---~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-~ 414 (883)
..-.+++..|...+++.| .++||.||+||++..... +|. ..|.+... .|+.+.|+ -.+++..-.+.. .
T Consensus 5 p~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~ 82 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVF-RSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDS-LGRVLGLRPDMTTPIARAVSTRLR 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeeccCcchhhHHHhcccCCcchhceEEEECC-CCCEEeecCcCcHHHHHHHHHhcc
Confidence 344678899999999999 689999999999976421 121 12444322 36778887 344454433211 1
Q ss_pred C---CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 415 S---VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 415 ~---~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
+ --|+|++|+|||.|.....|..||+|+++|+-+.+ -.|++.++-+.+..+
T Consensus 83 ~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l 140 (314)
T TIGR00443 83 DRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL 140 (314)
T ss_pred cCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 2 24999999999999998888899999999998765 345555555555443
No 276
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00011 Score=74.84 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcC-CCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~ 211 (883)
.+.++||+=+|+|.++..++++|...++.||.+..++...+++..... .....++..|+..+..... .+.||+|+...
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 578999999999999999999999999999999999999999988764 3455778888775422211 13599999988
Q ss_pred cccc-cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMF-ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~h-l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
-++. +.+.......-.-..+|+|+|.+++....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 7662 11111122222255789999999998743
No 277
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.79 E-value=0.00011 Score=84.50 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CC---C-ccceeccCCCCceeeEe--cCHHHHHHHHHc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GG---A-REFVVPTHEPNKFYSLV--QSPQQLKQLLMV- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~g---a-~~f~v~~~~~~~~~~L~--~Spql~kq~l~~- 413 (883)
..-.+.+..+...+++.| .++||.||.||++.... . .| . ..|.+.-...|..+.|+ ..+++..-++..
T Consensus 14 p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLF-RRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhc
Confidence 455678899999999999 68999999999996531 1 11 1 12444332146778887 444454433211
Q ss_pred cC---CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 414 GS---VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 414 ~~---~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
.. --|+|++|+|||.|.....|..||+|+++|+.+.+ -.|++.++-+.+..+
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 11 12999999999999999999999999999998876 356666666655544
No 278
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=97.79 E-value=0.00012 Score=86.43 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC----------CC----ccceeccC------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG----------GA----REFVVPTH------------------ 392 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~----------ga----~~f~v~~~------------------ 392 (883)
..-...+..+.+.+|+.| ...||.||.||.+..+-.+ .| ..|.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~f-~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he 307 (489)
T PRK04172 229 PGKKHPYREFIDEVRDIL-VEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHE 307 (489)
T ss_pred CCCCChHHHHHHHHHHHH-HHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHh
Confidence 344567889999999999 6899999999999742000 01 01111100
Q ss_pred ----------------CCCceeeEe--cCHHHHHHHHHccCC-CcEEEEeeceecCCCCCCCCcceecccccccCC--CH
Q psy8372 393 ----------------EPNKFYSLV--QSPQQLKQLLMVGSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TR 451 (883)
Q Consensus 393 ----------------~~~~~~~L~--~Spql~kq~l~~~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~ 451 (883)
..+....|+ .+|-+..-+.--+.. -|+|+||+|||+|..+..|.+||+|+++.+.+. ++
T Consensus 308 ~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f 387 (489)
T PRK04172 308 HGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSF 387 (489)
T ss_pred ccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCH
Confidence 001223454 233233322111111 299999999999998888889999999999986 57
Q ss_pred HHHHHHHHHHHHHH
Q psy8372 452 DDVMRLIEELLCYC 465 (883)
Q Consensus 452 ~dvm~~~E~li~~i 465 (883)
.+++.++++++..+
T Consensus 388 ~elkg~l~~ll~~l 401 (489)
T PRK04172 388 RDLLGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888654
No 279
>KOG1661|consensus
Probab=97.78 E-value=0.00013 Score=74.48 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC--eEEEEeCCHHHHHHHHHHHhhcc----------CCCccEEEccCCCCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD--KIDLLEQSSKFIEQAKEEILKDC----------DKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~--~V~gvD~S~~~le~A~~~~~~~~----------~~~~~~~~~d~~~~~~~~ 199 (883)
.++.+.||+|+|+|+++..++.. +.. .++|||.-++.++.+++++.... .....++.+|.....+..
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 47889999999999998765532 222 35899999999999999877542 123356677776655544
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+||.|++..... ...+++...|+|||.+++..
T Consensus 161 --a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 --APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence 6899999985433 34566778899999999876
No 280
>KOG1269|consensus
Probab=97.77 E-value=4.4e-05 Score=85.91 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++..++|+|||.|....++...+...++|+|.++..+..+........ .+...++..++...++.+ +.||.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed--n~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED--NTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc--cccCcEEEEe
Confidence 4566899999999999998887776679999999998888877665542 233456777777766665 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+|.++ ...++++++|++||||+++..+...
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999987 8899999999999999999987653
No 281
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.74 E-value=0.00012 Score=78.52 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCCh--HHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEc
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGR--ISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~--~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~ 190 (883)
.+..+.|+............-...||+|||-=. ....++... +. +|+-+|..|-.+..++..+.........++++
T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 345566666665443332234579999999642 444555442 22 79999999999999999887654334678999
Q ss_pred cCCCCCC----------CcCCCCccEEEEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cc
Q psy8372 191 GIQDFKP----------EDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY 252 (883)
Q Consensus 191 d~~~~~~----------~~~~~~FDlVvs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~ 252 (883)
|+.+... .++ +.-=.|++..+|||+++ +++..+++.++..|.||.+|+++..+...... .+
T Consensus 129 D~r~p~~iL~~p~~~~~lD~-~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDF-DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--T-TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred CCCCHHHHhcCHHHHhcCCC-CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9876421 111 12226778889999987 77999999999999999999999876543211 11
Q ss_pred c-CCcccccccchhhhhhhhhcccccc
Q psy8372 253 D-DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 253 ~-~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
. .......++.+++..+|. ||+++
T Consensus 208 ~~~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 208 AQAGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp HHCCS----B-HHHHHHCCT--TSEE-
T ss_pred HcCCCCceecCHHHHHHHcC--CCccC
Confidence 1 233455677778888886 77665
No 282
>PLN02972 Histidyl-tRNA synthetase
Probab=97.74 E-value=0.00015 Score=87.79 Aligned_cols=121 Identities=20% Similarity=0.287 Sum_probs=85.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc---cceeccCCCCceeeEe---cCHHHHHHHH
Q psy8372 342 PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR---EFVVPTHEPNKFYSLV---QSPQQLKQLL 411 (883)
Q Consensus 342 ~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~---~f~v~~~~~~~~~~L~---~Spql~kq~l 411 (883)
+.+-.-..+|..|...+++.| ..+||.||.||++.... ..|.. .|.+.- ..|+.+.|+ +.| +..-++
T Consensus 335 D~lP~e~~~re~I~~~L~~vF-k~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D-~gGr~LaLRPDlTvP-iAR~vA 411 (763)
T PLN02972 335 DFAKEQMAIREKAFSIITSVF-KRHGATALDTPVFELRETLMGKYGEDSKLIYDLAD-QGGELCSLRYDLTVP-FARYVA 411 (763)
T ss_pred cCCHHHHHHHHHHHHHHHHHH-HHcCCEEccCCcccchHHhhcccCcchhheEEEEC-CCCCEEEeCCCChHH-HHHHHH
Confidence 445666788999999999999 68999999999996531 11221 243332 236677787 444 544333
Q ss_pred HccC-CCcEEEEeeceecCCCCCCCCcceecccccccCC-C----HHHHHHHHHHHHHHH
Q psy8372 412 MVGS-VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~-~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~i 465 (883)
+-.. --|.|+||+|||.|.....|..||+|+++|+.+. + -.|++.++-+.+..+
T Consensus 412 ~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 412 MNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL 471 (763)
T ss_pred hCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC
Confidence 2111 2378899999999999888999999999999885 2 356777766666543
No 283
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.74 E-value=0.00019 Score=82.32 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC----ccceeccCCCCceeeEe--cCHHHHHHHHH-
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLM- 412 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~- 412 (883)
+-.-.+.+..|.+.+++.| ..+||.||+||++.... . .|. ..|.+.-...|+...|+ ..+++..-...
T Consensus 17 lp~e~~~~~~i~~~l~~~f-~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~ 95 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLF-ASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHL 95 (392)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhh
Confidence 3455668899999999999 68999999999996532 1 121 12443322236667786 33444442111
Q ss_pred -c-cCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 413 -V-GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 -~-~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
. ..--|.|++|+|||.+.....|..||+|+.+|+.+.+ -.|++.++-+.++.+
T Consensus 96 ~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 96 LNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred cCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 1 1224999999999999988889999999999998876 357777776666554
No 284
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.73 E-value=0.0001 Score=76.52 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++..|||+.||.|.++..++.. ....|+++|++|.+++.+++++..+.. ..+..+.+|+.++.. .+.||.|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEEEC
Confidence 56889999999999999988773 334799999999999999999887743 446788999988766 2689999986
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
.. +. ...+|..+.+++++||.+-
T Consensus 177 lp--~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP--ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T--SS----GGGGHHHHHHHEEEEEEEE
T ss_pred Ch--HH----HHHHHHHHHHHhcCCcEEE
Confidence 53 11 2258888999999999864
No 285
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.72 E-value=0.00011 Score=79.01 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+...+||=||.|.|..+..+++.. ..+++.||+++.+++.|++.+... ...+++.+..|...+.......+||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357799999999999998877654 348999999999999999977653 245678888888765443312289999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+....-...+... -..+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9844322111111 2479999999999999999876
No 286
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.70 E-value=0.00016 Score=80.27 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC---ccceeccCCCCceeeEe--cCHHHHHHHHHc--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA---REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga---~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-- 413 (883)
..-.+.+..+.+.+++.| .++||.||+||++.... . .|. ..|.+.- ..|..+.|+ ..+++..-++..
T Consensus 7 ~~~~~~~~~i~~~l~~~f-~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D-~~G~~l~LR~D~T~~iaR~~a~~~~ 84 (311)
T PF13393_consen 7 PEEARKRERIESKLREVF-ERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLD-RSGRVLALRPDLTVPIARYVARNLN 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEEC-TTSSEEEE-SSSHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEECCeEeecHHhhhccccchhhhEEEEe-cCCcEeccCCCCcHHHHHHHHHhcC
Confidence 445678899999999999 68999999999997642 1 111 2344433 247778887 444565554432
Q ss_pred -cCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHH
Q psy8372 414 -GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLC 463 (883)
Q Consensus 414 -~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~ 463 (883)
....|+|++|++||.+.....+..||+|+.+|..+.+ -.|++.++-+++.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 2335999999999999888888899999999998876 3477777777775
No 287
>PLN02530 histidine-tRNA ligase
Probab=97.68 E-value=0.00021 Score=84.26 Aligned_cols=119 Identities=20% Similarity=0.331 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc----cceeccCCCCceeeEe--cCHHHHHHHHHc
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMV 413 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~ 413 (883)
+-.-..+|..|.+.+++.| ...||.||.||+|.... ..|.. -|.+.. ..|+.+.|+ ..|++..-.+..
T Consensus 80 lp~~~~~~~~i~~~~~~~~-~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D-~~g~~l~LRpD~T~~iaR~~~~~ 157 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVS-RLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFED-KGGRRVALRPELTPSLARLVLQK 157 (487)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHhccccCcccccceEEEEC-CCCCEEecCCCCcHHHHHHHHhc
Confidence 3455678999999999999 68999999999997631 11221 243322 236677776 344454433211
Q ss_pred c---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 414 G---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 414 ~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
. .+ -|.|++++|||.|.....|..||+|+++|+.+.+ ..|++.++-+.+..
T Consensus 158 ~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~ 216 (487)
T PLN02530 158 GKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKR 216 (487)
T ss_pred ccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHH
Confidence 1 12 2899999999999999999999999999998876 34566655554433
No 288
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.65 E-value=0.00021 Score=80.98 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCC---CeEEEc--CCeeccCCCCCCccceecc--CCCCceeeE--------ecCHHHHHHHHHccCCC
Q psy8372 353 KFLMRTREFLATHR---DFVEVE--TPTLFKRTPGGAREFVVPT--HEPNKFYSL--------VQSPQQLKQLLMVGSVD 417 (883)
Q Consensus 353 ~i~~~iR~f~~~~~---gF~EV~--TP~l~~~~~~ga~~f~v~~--~~~~~~~~L--------~~Spql~kq~l~~~~~~ 417 (883)
.+...|+++| .+. ||.+++ .|+.+..-.=.+-.|+.++ +.....||+ .+|+-+..-| ..+-.
T Consensus 72 ~~~~~i~~~f-~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l--~~~~~ 148 (402)
T PLN02788 72 ILKNAIYDYF-DENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELL--RAGHT 148 (402)
T ss_pred HHHHHHHHHH-hhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHH--HhCCC
Confidence 3456666777 454 899998 5655332111222233322 233344455 2676433332 34557
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC--------------CCHHHHHHHHHHHHHHHhc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF--------------TTRDDVMRLIEELLCYCLN 467 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--------------~~~~dvm~~~E~li~~i~~ 467 (883)
|++.+|+|||+|..+.+|.|+|+|+|.-+.+ .+..++...+|.++..++.
T Consensus 149 ~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg 212 (402)
T PLN02788 149 HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFG 212 (402)
T ss_pred cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987776 4478899999999987753
No 289
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.00022 Score=82.83 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCCc------cceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGAR------EFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga~------~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
+-.-..++..|.+.+++.| ..+||.||.||+|.... . .|+. .|.+... .|..+.|+ -.+++..-++
T Consensus 14 ~p~~~~~~~~i~~~l~~~f-~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va 91 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVF-ERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVA 91 (423)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHH
Confidence 4455678899999999999 68999999999996641 1 1211 2443322 36667776 3333444333
Q ss_pred HccC--CC-cEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 412 MVGS--VD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~--~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
.-.. .. |.|++|+|||.|.....|..||+|+++|+.+.+ ..|++.++-+.++.+
T Consensus 92 ~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 92 MNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred hCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 2122 23 899999999999988888899999999998865 467777766555543
No 290
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.64 E-value=0.00023 Score=82.16 Aligned_cols=126 Identities=14% Similarity=0.273 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCC--------ccceeccCCCCceeeEecCHHHHHHHHHcc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGA--------REFVVPTHEPNKFYSLVQSPQQLKQLLMVG- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~- 414 (883)
....++..+|.+.+++.+ .+.||.||.||.|.... -.++ ..|.+. +..++|....+.-.-.+...
T Consensus 170 p~g~~l~~aL~~~~~~~~-~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~----~~~~~L~pTsE~~~~~~~~~~ 244 (418)
T TIGR00414 170 NDGAKLERALINFMLDLL-EKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE----DTDLYLIPTAEVPLTNLHRNE 244 (418)
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCccccccccceEec----CCCEEEEeCCcHHHHHHHhCc
Confidence 356889999999999999 57899999999998752 1111 124442 34567865443222111111
Q ss_pred -----CCC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceee
Q psy8372 415 -----SVD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 415 -----~~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~ri 476 (883)
.+. |+|++++|||+|.... -|..||+|.|. ..|.+-++..+..++++.. +++.+.-||..+
T Consensus 245 i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v 321 (418)
T TIGR00414 245 ILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAEQILQELELPYRVV 321 (418)
T ss_pred CCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 122 8999999999997532 25689999999 5688878887777777764 344455555544
No 291
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00022 Score=82.28 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs~~ 211 (883)
.++.+|||+=||.|.++..++. ...+|+|+|+++.+++.|+++++.++..++.|..+++.++..... ...+|.|+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 4667999999999999997764 455799999999999999999999887778999999988765431 24789999865
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
-=.-+.. .+++.+. .++|...++++.+.. |...-...|...|+++.+...-..||
T Consensus 371 PR~G~~~----~~lk~l~-~~~p~~IvYVSCNP~----------------TlaRDl~~L~~~gy~i~~v~~~DmFP 425 (432)
T COG2265 371 PRAGADR----EVLKQLA-KLKPKRIVYVSCNPA----------------TLARDLAILASTGYEIERVQPFDMFP 425 (432)
T ss_pred CCCCCCH----HHHHHHH-hcCCCcEEEEeCCHH----------------HHHHHHHHHHhCCeEEEEEEEeccCC
Confidence 3222211 3444444 467888999988422 23344566777777766666666665
No 292
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.62 E-value=0.00017 Score=79.51 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCcccee--ccCCC------CceeeEe--cCHHHHHHHHHccCC---
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAREFVV--PTHEP------NKFYSLV--QSPQQLKQLLMVGSV--- 416 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~f~v--~~~~~------~~~~~L~--~Spql~kq~l~~~~~--- 416 (883)
...+.+.+|++| ...||.|+.||.++... .-.+-.+.. |.+.. .....|+ .+|-+..- |....
T Consensus 74 ~~~~~~~ir~~l-~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~--l~~N~~~p 150 (294)
T TIGR00468 74 LTRVIDEIRDIF-LGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRT--MEENEKPP 150 (294)
T ss_pred HHHHHHHHHHHH-HHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHH--HHhcCCCC
Confidence 456777889999 58999999999997541 100000110 00000 0122355 45544333 23344
Q ss_pred CcEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~i 465 (883)
-|+|+||+|||++..+..|.|||+|++.-+.. .++.++...+|.++..+
T Consensus 151 irlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 151 IRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 39999999999988777788999999988765 37999999999988765
No 293
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.59 E-value=0.0004 Score=76.04 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC----CCccceeccCCCCceeeEe--cCHHHHHHHHHc---cC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG----GAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV---GS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~----ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~---~~ 415 (883)
..-...+..|.+.+++.| ...||.||+||++.....- ....|.+... .|+.+.|+ ..+++..-.+.. ..
T Consensus 16 p~e~~~~~~i~~~l~~vf-~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~ 93 (281)
T PRK12293 16 GKSAKLKREIENVASEIL-YENGFEEIVTPFFSYHQHQSIADEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRST 93 (281)
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCeEeeccceeehhhhcccchhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCC
Confidence 445568889999999999 6899999999999654221 1123544322 36677786 344454433211 11
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccCCC-HHHHHHHHHHHHH
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT-RDDVMRLIEELLC 463 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~-~~dvm~~~E~li~ 463 (883)
--|.|++|+|||.|. .||+|+.+|+.+.+ ..|++.++-+.++
T Consensus 94 ~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~ 137 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFE 137 (281)
T ss_pred CceeEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHH
Confidence 139999999999984 69999999999876 5455554444433
No 294
>PRK00536 speE spermidine synthase; Provisional
Probab=97.58 E-value=0.00057 Score=73.73 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQ 193 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~ 193 (883)
..+.|.+.... . .+...+||=||.|.|..+..+++.. .+|+.||+++.+++.|++.++.. ..++++.+. .
T Consensus 58 YHEmLvHppl~-~-h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~-- 131 (262)
T PRK00536 58 ESELLAHMGGC-T-KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q-- 131 (262)
T ss_pred HHHHHHHHHHh-h-CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h--
Confidence 34445554322 2 2456799999999999999998864 47999999999999999966543 234444443 1
Q ss_pred CCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 194 ~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+. ....++||+|++-.. . ...+.+.++++|+|||.++...
T Consensus 132 -~~-~~~~~~fDVIIvDs~----~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 132 -LL-DLDIKKYDLIICLQE----P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -hh-hccCCcCCEEEEcCC----C---ChHHHHHHHHhcCCCcEEEECC
Confidence 11 111258999998753 1 2468899999999999999875
No 295
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.55 E-value=0.00025 Score=86.63 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-c-----cceeccCCCCceeeEe--cCHHH---HHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-R-----EFVVPTHEPNKFYSLV--QSPQQ---LKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~-----~f~v~~~~~~~~~~L~--~Spql---~kq 409 (883)
+-.-.+++..|.+.+++.+ ...||.||.||+|.... .+|. . -|.+.. ..+..+.|+ ..|.. |.+
T Consensus 266 lp~~~~~~~~i~~~~~~~~-~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKL-RKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHH-HHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhC
Confidence 3456778999999999999 68999999999997642 1232 1 244422 235778886 33432 222
Q ss_pred HHHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCC
Q psy8372 410 LLMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFT 449 (883)
Q Consensus 410 ~l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~ 449 (883)
.... ..+. |+|++|+|||.|.+.. .|..||+|+|+|.-..
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~ 389 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCT 389 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcC
Confidence 1111 1233 9999999999998863 3778999999998443
No 296
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00023 Score=84.43 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.++|..|.+.+|+.+ .+.||.||.||.|.... ..|.- -|.+. ..+..++|+ .-|-+ |++.
T Consensus 165 P~G~~i~~~L~~~~r~~~-~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~--~~~e~~~LrPm~cp~~~~~~~~~ 241 (545)
T PRK14799 165 PKGQTIRNELIAFMREIN-DSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN--MEGDEYGVKPMNCPAHILIYKSK 241 (545)
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCeEEECCccchHHHHhhccccccchhhcceee--ccCceEEeccCCCHHHHHHHhcc
Confidence 345679999999999999 68999999999996642 23322 13332 225677886 33322 3332
Q ss_pred HHcc-CCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 411 LMVG-SVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~~-~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
.-.. .+. |+|++|+|||.|.+.. .|-.||||.|+.. |.+.+++.+.+.+++.-
T Consensus 242 ~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~ 300 (545)
T PRK14799 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISK 300 (545)
T ss_pred ccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHH
Confidence 1111 233 9999999999999986 6789999999998 87766665555554443
No 297
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00059 Score=75.95 Aligned_cols=107 Identities=23% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..|.+|||.=||.|.++..++..+...|+++|++|.+++..++++.-+.... +..+.+|+.+..+.. +.+|-|++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeCC
Confidence 4689999999999999998888887779999999999999999998775444 788999998887653 5899999876
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.- . ...++..+.+.+++||.+-..+...+.
T Consensus 265 p~----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 265 PK----S--AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CC----c--chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 42 1 347888899999999999998866543
No 298
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.49 E-value=0.00056 Score=82.33 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEecC--HHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLVQS--PQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~~S--pql---~kq~ 410 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|.. -|.+.. ..++.++|+.- |.+ |.+.
T Consensus 197 p~g~~~~~~i~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~ 274 (563)
T TIGR00418 197 PKGATIRNLLEDFVRQKQ-IKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSS 274 (563)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCc
Confidence 455778999999999999 68999999999997642 12321 133322 12577888722 222 2222
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
... ..+. |+|++|+|||+|.+.. .|..||+|.|+|.-.. .++....
T Consensus 275 ~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e 326 (563)
T TIGR00418 275 LRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEE 326 (563)
T ss_pred CCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHH
Confidence 111 1233 9999999999995532 2778999999998655 3444333
No 299
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.0004 Score=80.40 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCC--------ccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGA--------REFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
....++..+|++.+++.+..+.||.||.||.|.... ..++ ..|.+. +..++|....+.-.-.++...
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~----~~~~~L~pTsE~~l~~l~~~~ 242 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE----DDDLYLIPTAEVPLTNLHRDE 242 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec----CCCEEEEeCCcHHHHHHHhcc
Confidence 356789999999999988327899999999998752 1221 124443 345677643332211112211
Q ss_pred ------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCcee
Q psy8372 416 ------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSR 475 (883)
Q Consensus 416 ------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~r 475 (883)
+. |+|++++|||+|.... -|..||+|.|.+ .|...++..+..++++.. ++..+.-||..
T Consensus 243 ~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~ 318 (425)
T PRK05431 243 ILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAEEILQKLELPYRV 318 (425)
T ss_pred cCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 22 9999999999998542 255899999998 587778877777777754 34445545543
No 300
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.47 E-value=0.00096 Score=75.50 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~ 193 (883)
.......++........ ..++ +|||+-||.|.++..++ ..+.+|+|||.++.+++.|++++..++..+++|+.+++.
T Consensus 178 N~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp BHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred cHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 34445555555433222 2233 89999999999998664 445679999999999999999999888888899988765
Q ss_pred CCCCC--------------cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 194 DFKPE--------------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 194 ~~~~~--------------~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
++... .....+|+|+....=.-+.. .++..+. ++.=.+++++... ..
T Consensus 255 ~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~----~~~~~~~---~~~~ivYvSCnP~------------tl 315 (352)
T PF05958_consen 255 DFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDE----KVIELIK---KLKRIVYVSCNPA------------TL 315 (352)
T ss_dssp HCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCH----HHHHHHH---HSSEEEEEES-HH------------HH
T ss_pred chhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH----HHHHHHh---cCCeEEEEECCHH------------HH
Confidence 54221 00125899987543222221 2333332 3344666665211 11
Q ss_pred cccchhhhhhhhhcccccccccCCCCCc
Q psy8372 260 VRSLPQFCLLFSKANLKCVKSEKGEFSP 287 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv~~~~~~~~P 287 (883)
..++..+ .+ |+++.....-..||
T Consensus 316 ---aRDl~~L-~~-~y~~~~v~~~DmFP 338 (352)
T PF05958_consen 316 ---ARDLKIL-KE-GYKLEKVQPVDMFP 338 (352)
T ss_dssp ---HHHHHHH-HC-CEEEEEEEEE-SST
T ss_pred ---HHHHHHH-hh-cCEEEEEEEeecCC
Confidence 2233333 33 89988877777776
No 301
>KOG2352|consensus
Probab=97.47 E-value=0.00069 Score=77.50 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.++|-+|||.-.++..+.+.|+..|+.+|+|+..++.+..+.. .......+...|+....+.. ++||+|+.-..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fed--ESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFED--ESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCC--cceeEEEecCcccc
Confidence 3999999999999999999999999999999999998887664 22334467788888777665 79999999999988
Q ss_pred cCh-H-------HHHHHHHHHHHHhccCcEEEEEec
Q psy8372 216 ILD-E-------DIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 216 l~d-e-------d~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+-. + .....+.+++|+|+|||+.+....
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 732 1 234678999999999999888775
No 302
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.46 E-value=0.0002 Score=73.01 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC------CCCc--CCCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF------KPED--LNIK 203 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~------~~~~--~~~~ 203 (883)
++.+|||+||++|.++..++..+ ...|+|+|+.+.. ....+.++++|+.+. .... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999888777 3489999998761 111222333333221 1110 1258
Q ss_pred ccEEEEcccccccCh---------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 204 YDVIWIQWVLMFILD---------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 204 FDlVvs~~vL~hl~d---------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+|+|-.+.....+ +-....+.-+...|+|||.+++....
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 999999773221110 22445566666889999999998853
No 303
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.00052 Score=79.95 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEec-C----HHHHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQ-S----PQQLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~-S----pql~kq~l 411 (883)
.-.+++.+|.+.+|+-+ .+.||.||.||.|.... ..|. .-|.+... .+..++|+. + ..+++..+
T Consensus 45 ~g~~i~~~i~~~i~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~-~~~~~~L~Pt~e~~~~~~~~~~~ 122 (439)
T PRK12325 45 LGLKVLKKIENIVREEQ-NRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDR-HDREMLYGPTNEEMITDIFRSYV 122 (439)
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhheEEecC-CCCEEEEcCCCcHHHHHHHHHHh
Confidence 44678999999999999 68999999999997641 1121 22554322 256778874 3 12344442
Q ss_pred Hc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 412 MV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
.. ..+. |+|||+++||+|... .. |..||+|-|.+....+.+++.+..++++.
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~ 179 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFV 179 (439)
T ss_pred hhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHH
Confidence 21 1233 999999999999543 23 67999999999987887766665555554
No 304
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00048 Score=83.14 Aligned_cols=115 Identities=24% Similarity=0.248 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. .-|.+.. ..++.++|+ ..|.. +.+.
T Consensus 203 p~~~~~~~~l~~~~~~~~-~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~~~~~~~ 280 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEH-LKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPME-IDEEEYYLKPMNCPGHILIYKSR 280 (575)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCCcccchhhcccccc-cCCceEEEecCCCHHHHHHHhcc
Confidence 455789999999999999 68999999999997752 1232 1244421 235778886 33332 2221
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li 462 (883)
... ..+. |.|++|+|||+|.+.. .|..||+|.|+|+ |.+.+...+.+.+++
T Consensus 281 ~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i 337 (575)
T PRK12305 281 LRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVL 337 (575)
T ss_pred cCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHH
Confidence 111 1233 9999999999998853 4668999999997 555444444333333
No 305
>KOG3191|consensus
Probab=97.43 E-value=0.0011 Score=66.46 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
..-+||||||+|..+..+++.-. + .+.++|+++.+++..++.+..+... +..++.|+.+-... ++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~~---~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLRN---ESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhcc---CCccEEEECCC
Confidence 55799999999999987776532 2 6789999999999988877755433 36777777654322 58888887652
Q ss_pred ccccCh-------------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 213 LMFILD-------------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 213 L~hl~d-------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
.---++ +-...++..+-.+|.|.|.+++...... .+.+....++.-
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------KPKEILKILEKK 184 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------CHHHHHHHHhhc
Confidence 111000 1245667777788899999999874322 355666777777
Q ss_pred cccccc
Q psy8372 274 NLKCVK 279 (883)
Q Consensus 274 Gf~vv~ 279 (883)
||....
T Consensus 185 g~~~~~ 190 (209)
T KOG3191|consen 185 GYGVRI 190 (209)
T ss_pred ccceeE
Confidence 776543
No 306
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.43 E-value=0.00044 Score=84.44 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCc------cceeccCCCCceeeEecCHH--H---HHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGAR------EFVVPTHEPNKFYSLVQSPQ--Q---LKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~------~f~v~~~~~~~~~~L~~Spq--l---~kq~l 411 (883)
.-..++..|.+.+++.+ .+.||.||.||+|.... -+|.. -|.++ ..+..++|+.-.. + |+..+
T Consensus 272 ~g~~~~~~i~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d--~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 272 KGQIIRNELEAFLREIQ-KEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSE--VDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred CHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeec--CCCcEEEEccCCCHHHHHHHhCcc
Confidence 34567788999999999 68999999999997752 12321 13222 2256677863222 2 22221
Q ss_pred Hc-cCCC-cEEEEeeceecCCCCC--C--CCcceecccccccCCCHHHHHHHHHHHHH---HHhccCCCCc
Q psy8372 412 MV-GSVD-RYFQIARCYRDESTRP--D--RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLNIPTRTF 473 (883)
Q Consensus 412 ~~-~~~~-rvf~I~~~FR~E~~~~--~--r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~~~~~~f 473 (883)
.. ..+. |+|++++|||.|.+.. . |..||+|.|++ .|.+.+++.+.+++++. .+++.+.-||
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~ 418 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDYVYKTFGFEY 418 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 11 1222 9999999999999754 4 67899999999 57776665555444443 3444443344
No 307
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.41 E-value=0.00064 Score=75.49 Aligned_cols=124 Identities=17% Similarity=0.052 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--------CCCeEEEEeCCHHHHHHHHHHHhhcc--CCCc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--------HFDKIDLLEQSSKFIEQAKEEILKDC--DKLD 185 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--------g~~~V~gvD~S~~~le~A~~~~~~~~--~~~~ 185 (883)
.....++..+. ...++.+|||.+||+|.+...+... ....++|+|+++.++..|+.++.-.+ ....
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 34444555554 2245678999999999998877652 23379999999999999987764332 2222
Q ss_pred cEEEccCCCCCCCcCCCCccEEEEccccccc--Ch-----------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 186 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI--LD-----------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 186 ~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl--~d-----------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.....|....+.......||+|+++.-+--. .. ..-..++..+.+.|++||++.+..+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3566665443322113689999997644322 00 0123588999999999999888775
No 308
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.40 E-value=0.00057 Score=81.56 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=66.5
Q ss_pred eecCCccccchhhH-------HHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEec
Q psy8372 622 LILPKDLDSTNKKI-------TEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSW 694 (883)
Q Consensus 622 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 694 (883)
|++|+...++++++ ++|.++++. +|.+++.|+ ++ . ....++++++++|.+.+++++||+++|.+
T Consensus 302 I~vpg~~~lsrkei~pgrr~gdeL~e~aK~-~GakGL~~~--de---l---p~~~it~eev~~L~e~l~ak~GD~ll~vA 372 (620)
T TIGR00134 302 VLLRGFDGLVGVEIQPGRRLGTEFADYAKK-RGVGGIFHT--DE---L---PAYGITEEEVRGLRDAVGAEQGDAVVMVA 372 (620)
T ss_pred EEcCCCcccchhhhcccccchHHHHHHHHH-cCCCceEee--cc---c---ccCCCCHHHHHHHHHHhCCCCCCEEEEEc
Confidence 88998778999999 899999996 577788776 21 1 13347889999999999999999999999
Q ss_pred CCchhhHhHHHHHHH
Q psy8372 695 GKQEDVLSLLGMIRS 709 (883)
Q Consensus 695 ~~~~~~~~~lg~lr~ 709 (883)
++...+.++||++..
T Consensus 373 dk~~~v~~aL~~v~~ 387 (620)
T TIGR00134 373 HERVTVERALREVIE 387 (620)
T ss_pred CcHHHHHHHHHHHHh
Confidence 998899999999854
No 309
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.39 E-value=0.00044 Score=81.19 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----C-ccceeccCCC---CceeeEecCHH-----HHHH
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----A-REFVVPTHEP---NKFYSLVQSPQ-----QLKQ 409 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a-~~f~v~~~~~---~~~~~L~~Spq-----l~kq 409 (883)
.+++..|.+.+++-+ .+.||.||.||+|.... .++ . ..|.+..... +..++|+...+ +|++
T Consensus 38 ~~i~~~I~~~i~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 38 FKIWKNIQKILRNIL-DEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 456899999999999 67899999999997642 222 1 2255543321 36788873332 2333
Q ss_pred HHHc-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHH---HHhc-cCCCCceee
Q psy8372 410 LLMV-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLC---YCLN-IPTRTFSRI 476 (883)
Q Consensus 410 ~l~~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~~-~~~~~f~ri 476 (883)
.+.. ..+. |+||+++|||+|...+ .|..||+|.|.+..|.+.++..+.++.++. .++. .+.-|+...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~ 192 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVG 192 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 3211 1233 9999999999999864 355899999999999998887777666664 3444 444444433
No 310
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.39 E-value=0.0009 Score=69.81 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=86.4
Q ss_pred EEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 138 VLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
|.||||-.|.+..+|+..+.. .++++|+++..++.|+++....+ ...+++..+|-.+..... +..|+|+...+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEecCCH-
Confidence 689999999999999999876 79999999999999999998774 455677788754432222 2478888766533
Q ss_pred cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 216 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.-...+|.+....++....|++.... ....+++++.+.||.++.+..
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILqP~~-----------------~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQPNT-----------------HAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEEESS------------------HHHHHHHHHHTTEEEEEEEE
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEeCCC-----------------ChHHHHHHHHHCCCEEEEeEE
Confidence 33667888887777766677776521 355889999999999986654
No 311
>PLN02908 threonyl-tRNA synthetase
Probab=97.38 E-value=0.00052 Score=84.21 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe--cCHHH---HHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV--QSPQQ---LKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~--~Spql---~kq 409 (883)
+-.-.+++..|.+.+|+.+ .++||.||.||.|.... ..|. .-|.++. .+..++|+ .-|.+ |++
T Consensus 317 lP~g~~i~~~l~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~--~~~~~~Lrp~~~~~~~~~~~~ 393 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQY-WERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI--EKQEFGLKPMNCPGHCLMFAH 393 (686)
T ss_pred echHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHhhcCCccccchhccEEec--CCeeEEEcCCCcHHHHHHHhc
Confidence 3556789999999999999 68999999999997752 1221 1244432 25667886 33322 333
Q ss_pred HHHcc-CCC-cEEEEeeceecCCCC----CCCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 410 LLMVG-SVD-RYFQIARCYRDESTR----PDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 410 ~l~~~-~~~-rvf~I~~~FR~E~~~----~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
..... .+. |+|++++|||+|.+. -.|-.||+|.|.+. |...+++.+.+++++..+
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~ 454 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFL 454 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHH
Confidence 21111 223 999999999999884 34668999999998 777777777777776544
No 312
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.00042 Score=81.46 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----C-ccceeccCC---CCceeeEe-cC----HHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----A-REFVVPTHE---PNKFYSLV-QS----PQQ 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a-~~f~v~~~~---~~~~~~L~-~S----pql 406 (883)
-.-.+++..|.+.+++.| .+.||.||.||.|...+ .+| + ..|.+.... .+..++|+ +| -.+
T Consensus 41 P~g~~i~~~i~~~~~~~~-~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~ 119 (477)
T PRK08661 41 PYGYAIWENIQKILDKLF-KETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPM 119 (477)
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHH
Confidence 344678999999999999 68999999999997652 122 1 235554322 13568886 44 234
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCCCCC---CCcceecccccccCCCHHHHHHHHHHHHH---HHh-ccCCCCcee
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLC---YCL-NIPTRTFSR 475 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~~~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~---~i~-~~~~~~f~r 475 (883)
|+..+.. ..+. |+||+++|||+|.. ++ |..||+|.|.+..+.+.++..+.+++++. .++ +.+.-|+..
T Consensus 120 ~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~ 196 (477)
T PRK08661 120 YKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVII 196 (477)
T ss_pred HHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 5554221 1233 99999999999998 54 66899999999999998888777776664 334 334444443
No 313
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=97.35 E-value=0.00018 Score=69.99 Aligned_cols=47 Identities=49% Similarity=0.711 Sum_probs=41.7
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChh
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPE 343 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~ 343 (883)
.+++|+.++++++++++ .++|+.+++....+.++|++|||||||++.
T Consensus 88 ~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 88 TGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 45799999999999999 799999877666789999999999999864
No 314
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.34 E-value=0.00039 Score=76.32 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC--CCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN--IKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~FDlVv 208 (883)
.++..+||.+||.|..+..++.... ..|+|+|.++.|++.|++++.. ..++.++..+..++...... .++|.|+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 4567999999999999999988764 3799999999999999988754 34556777776655321101 1577777
Q ss_pred Ec
Q psy8372 209 IQ 210 (883)
Q Consensus 209 s~ 210 (883)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 63
No 315
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.001 Score=71.42 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++..-. .++.+|||||+|.|.+|..+++.+.. |+++++++.+++..++... ...+.+.+.+|+
T Consensus 14 ~d~~v~~kIv~~a~~-----~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~Da 85 (259)
T COG0030 14 IDKNVIDKIVEAANI-----SPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA--PYDNLTVINGDA 85 (259)
T ss_pred cCHHHHHHHHHhcCC-----CCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc--cccceEEEeCch
Confidence 344444445444422 34789999999999999988888765 9999999999999998875 335668899999
Q ss_pred CCCCCCcCCCCccEEEEcccccccCh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
......... .++.|+++-- .+++.
T Consensus 86 Lk~d~~~l~-~~~~vVaNlP-Y~Iss 109 (259)
T COG0030 86 LKFDFPSLA-QPYKVVANLP-YNISS 109 (259)
T ss_pred hcCcchhhc-CCCEEEEcCC-CcccH
Confidence 987765311 5788888654 45543
No 316
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.34 E-value=0.00069 Score=74.87 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C------CccceeccCCCCceeeEecCHHHHHHHHHcc-
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G------AREFVVPTHEPNKFYSLVQSPQQLKQLLMVG- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g------a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~- 414 (883)
-...+++.+|.+.+++.+ .+.||.||.||.|.... -. | ...|.+. +..++|....+...-.++..
T Consensus 49 p~g~~l~~~l~~~~~~~~-~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~----~~~~~L~pt~e~~~~~l~~~~ 123 (297)
T cd00770 49 GDGALLERALINFALDFL-TKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE----GEDLYLIATAEVPLAALHRDE 123 (297)
T ss_pred CHHHHHHHHHHHHHHHHH-HHCCCEEEECcccccHHHHhhcCcCccChhcccEec----CCCEEEeecCCHHHHHHHhcc
Confidence 446789999999999999 68999999999998752 11 2 1224443 25577863333221111211
Q ss_pred -----CCC-cEEEEeeceecCCCC-------CCCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 415 -----SVD-RYFQIARCYRDESTR-------PDRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 415 -----~~~-rvf~I~~~FR~E~~~-------~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
.+. |+||+++|||+|... --|..||+|.|.+. |..-++..+..++++..
T Consensus 124 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~ 185 (297)
T cd00770 124 ILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISN 185 (297)
T ss_pred cCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHH
Confidence 122 999999999999762 12458999999974 65556666666665544
No 317
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.32 E-value=0.0024 Score=78.77 Aligned_cols=110 Identities=12% Similarity=-0.023 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-------------------------------------------CCeEEEEeCCHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-------------------------------------------FDKIDLLEQSSKF 169 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-------------------------------------------~~~V~gvD~S~~~ 169 (883)
.++..++|.+||+|.+.+.++... ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356799999999999998776421 0158999999999
Q ss_pred HHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccc-cC-hHHHHHHHHHHHHHhc---cCcEEEEEe
Q psy8372 170 IEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF-IL-DEDIIKFLNLCKQILN---KNGIIIIKD 242 (883)
Q Consensus 170 le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h-l~-ded~~~~l~~~~r~LK---PGG~lvi~~ 242 (883)
++.|++++...+. ..+.+.+.|+.++......++||+|+++.-.-. +. ..+...+...+.+.|| +|+.+++.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999987754 346888999988765432357999999865422 21 1334444444444444 898888776
No 318
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0022 Score=72.56 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=86.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDV 206 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~---~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDl 206 (883)
...++.+|||..++.|.=+.+++....+ .|+++|.|+.=+...++++...+..++..+..|...+...... ++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 3467899999999999988778877543 4699999999999999999988777767777777654432212 35999
Q ss_pred EEEc------ccccccC-------hH-------HHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 207 IWIQ------WVLMFIL-------DE-------DIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 207 Vvs~------~vL~hl~-------de-------d~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
|+.- .+++.=| .+ -..++|..+.++|||||.|+-++++..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9952 2331111 11 245789999999999999999997543
No 319
>KOG0820|consensus
Probab=97.28 E-value=0.0011 Score=70.31 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++..|||||.|||.++..+++.+.. |+++++++.|+....++..... ....+++.+|+...+.+ .||++++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P----~fd~cVs 129 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP----RFDGCVS 129 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc----ccceeec
Confidence 3467789999999999999999998776 9999999999999999987652 34457788888776543 5999998
Q ss_pred ccccc
Q psy8372 210 QWVLM 214 (883)
Q Consensus 210 ~~vL~ 214 (883)
+--..
T Consensus 130 NlPyq 134 (315)
T KOG0820|consen 130 NLPYQ 134 (315)
T ss_pred cCCcc
Confidence 75443
No 320
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.26 E-value=0.003 Score=61.96 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHHhhcc--C-CCccEEE
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-----KHFDKIDLLEQSSKFIEQAKEEILKDC--D-KLDKCYN 189 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~-----~g~~~V~gvD~S~~~le~A~~~~~~~~--~-~~~~~~~ 189 (883)
...++..+........+..+|+|+|||.|+++..++. .....|+|||.++..++.|.++..... . ....+..
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQ 88 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhc
Confidence 3344555433212235677999999999999987776 322279999999999999998877654 1 3345555
Q ss_pred ccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 190 ~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+..+... ....++++.-.+--.+.+ .+++.+.+ |+-.+++..++
T Consensus 89 ~~~~~~~~---~~~~~~~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 89 GDIADESS---SDPPDILVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred cchhhhcc---cCCCeEEEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 54443322 235677776554444433 45554444 66555554443
No 321
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.25 E-value=0.0015 Score=74.48 Aligned_cols=109 Identities=21% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCCc----cceeccCCCCceeeEe--cCHHHHHHHHH--ccCCCcE
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLM--VGSVDRY 419 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~--~~~~~rv 419 (883)
..|.+.+++.| ..+||.||+||++.... . .|.. .|.+... .|..+.|+ -.+++....+. ...-.|+
T Consensus 8 ~~i~~~i~~~f-~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASF-EAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHH-HHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 47888899999 68999999999996642 1 1221 2444322 36677786 33334443221 1222399
Q ss_pred EEEeeceecCCCCCCCCcceecccccccCC-C----HHHHHHHHHHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCYC 465 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~i 465 (883)
|++++|||.| ..|..||+|+++|+.+. + ..|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 9999999999 45668999999999884 3 457888877777654
No 322
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0014 Score=68.78 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++..+||+|+.||.++..++..|+.+|+|+|.....+..--+. ..+.+.....++..+.+....+..|+|+|--+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence 57889999999999999999999999999999998776654332 22333444556665555555567899999766
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccCCcccccc-------cchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~~~~~~~~-------s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+-. +..+|..+..+++|+|.++.-.-. .+-...... ..+..+ -.....+++.+.||.+.....
T Consensus 154 FIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 154 FIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred hhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 533 567999999999999987765421 110001111 111122 233666777777887765443
No 323
>PLN02837 threonine-tRNA ligase
Probab=97.21 E-value=0.0011 Score=80.43 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCCCCceeeEecCHH-----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHEPNKFYSLVQSPQ-----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~~~~~~~L~~Spq-----l~kq~ 410 (883)
-.-.+++.+|.+.+++.. .++||.||.||.|.... ..+++ -|.+... .+..|.|+.+.. +|++.
T Consensus 244 p~G~~l~~~L~~~~~~~~-~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~-~~~~y~l~p~~~p~~~~~~~~~ 321 (614)
T PLN02837 244 PKGAIVRHIIEDSWKKMH-FEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDI-EDELYQLRPMNCPYHILVYKRK 321 (614)
T ss_pred chHHHHHHHHHHHHHHHH-HHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCC-CCceEEECCCCcHHHHHHHhCc
Confidence 456789999999999999 57899999999997752 22222 2433211 145566764433 23332
Q ss_pred HHcc--CCC-cEEEEeeceecCCCCCC----CCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCc
Q psy8372 411 LMVG--SVD-RYFQIARCYRDESTRPD----RQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTF 473 (883)
Q Consensus 411 l~~~--~~~-rvf~I~~~FR~E~~~~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f 473 (883)
+ .+ .+. |++|+++|||+|.+... |-.||+|.|... |.+.+++.+.+++++..+ +..+.-|+
T Consensus 322 ~-~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 322 L-HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred c-CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 1 11 122 89999999999987533 558999999996 988888777777776543 33344444
No 324
>KOG1663|consensus
Probab=97.18 E-value=0.0043 Score=64.76 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~ 195 (883)
-.|+..++.. -..+++||||.-||+-+..++..-+. +|+++|+++...+.+.+..+..+ ...++++++.+.+.
T Consensus 62 g~fl~~li~~----~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 62 GQFLQMLIRL----LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHH----hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 3445555432 25679999999999988777665443 79999999999999987766553 34567888776543
Q ss_pred C----CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 196 K----PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 196 ~----~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
. .....++||.++.- |.. +.......++.+++|+||.|++....+.+
T Consensus 138 Ld~l~~~~~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHHHhcCCCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 2 11124789999763 333 34668999999999999999997755555
No 325
>KOG3201|consensus
Probab=97.17 E-value=0.00044 Score=67.84 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
-.+.+||++|.|--.++..+.+...+ .|...|-++..++..++....+ ....+..+..+...-........||.|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 35679999999976666545444333 7999999999988887754433 111111121111111111223589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+|..++..= +....++..+.+.|+|.|.-++..+-.. .+.+.+.+.....||.+..++.-
T Consensus 108 laADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg--------------~sL~kF~de~~~~gf~v~l~eny 167 (201)
T KOG3201|consen 108 LAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG--------------QSLQKFLDEVGTVGFTVCLEENY 167 (201)
T ss_pred EeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc--------------chHHHHHHHHHhceeEEEecccH
Confidence 998887543 4567888999999999999777765322 25778888899999988766554
No 326
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.17 E-value=0.0016 Score=77.66 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC---------CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLN 201 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~---------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 201 (883)
...+|||.|||+|.++..++.... ..++|+|+++.++..|+.++.............|..... .....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999987765431 268999999999999998876543111233333322111 11112
Q ss_pred CCccEEEEccccc
Q psy8372 202 IKYDVIWIQWVLM 214 (883)
Q Consensus 202 ~~FDlVvs~~vL~ 214 (883)
+.||+|+++.-.-
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999977543
No 327
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.15 E-value=0.0018 Score=65.71 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
-.+.+|||+|+|+|..+...+..|...|+..|+.+..++..+-+...++. .+.+...|... . +..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEeece
Confidence 46889999999999999988888888999999998888888777776543 23566666654 2 247999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+..-+. ...++.-..++...|-.+++.++.
T Consensus 152 fy~~~~--a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 152 FYNHTE--ADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ecCchH--HHHHHHHHHHHHhCCCEEEEeCCC
Confidence 764422 456777444444445556666643
No 328
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.14 E-value=0.0011 Score=69.22 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhc-------c--CC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKD-------C--DK 183 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~-------~--~~ 183 (883)
.......+++.+. ..++...+|+|||.|.....++. .++..++||++.+...+.|+...... + ..
T Consensus 27 ~~~~~~~il~~~~-----l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 27 SPEFVSKILDELN-----LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp HHHHHHHHHHHTT-------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred CHHHHHHHHHHhC-----CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555555542 25678999999999998765543 35567999999999988887643321 1 22
Q ss_pred CccEEEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 184 LDKCYNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 184 ~~~~~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++..+|+.+..... .-...|+|++++... . +++...|.+....||+|-+++..
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 3355666665432110 002469999988643 2 45667778888889988776643
No 329
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.13 E-value=0.00065 Score=68.13 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=81.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
...+.|+|+|+|.++. +++....+|++++.+|.-...|.+++.-.+..+++.+.+|+.+..+. ..|+|+|-+.=.
T Consensus 33 ~d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe----~ADvvicEmlDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE----NADVVICEMLDT 107 (252)
T ss_pred hhceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc----ccceeHHHHhhH
Confidence 3579999999999997 55555778999999999999999998766778889999999988763 579999865433
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
-+-++.....+..+...||-.|.++=.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccccH
Confidence 333344567888888899988887654
No 330
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.09 E-value=0.0018 Score=78.04 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC-----CCccceeccCCCCceeeEe--cCHHH---HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG-----GAREFVVPTHEPNKFYSLV--QSPQQ---LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~-----ga~~f~v~~~~~~~~~~L~--~Spql---~kq~ 410 (883)
-.-.+++..|.+.+++.+ .+.||.+|.||.+.... .+ +.+-|.+... +..++|+ ..|.+ |++.
T Consensus 224 P~G~~i~~~L~~~~~~~~-~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~--~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 224 PKGRLIRDLLEDYVYNLV-VELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD--KKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred cHHHHHHHHHHHHHHHHH-HHCCCEEEECCeecChhHHhhcccccccchhceEecCC--CceEEEecCCCHHHHHHHhCC
Confidence 356889999999999999 58999999999995431 11 2233555322 4567776 34433 3332
Q ss_pred HHc-cCCC-cEEEEee-ceecCCCCC----CCCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCcee
Q psy8372 411 LMV-GSVD-RYFQIAR-CYRDESTRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTFSR 475 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~-~FR~E~~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f~r 475 (883)
... ..+. |+||+++ |||+|.+.. .|-.||||.|.+..-.+.+++++.+++++..+ +..+.-||..
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~ 375 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEV 375 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 110 1122 8999999 999998753 35689999999997666888888888877654 3445555554
No 331
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.08 E-value=0.0005 Score=68.85 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCC-CccEEEEcc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNI-KYDVIWIQW 211 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~-~FDlVvs~~ 211 (883)
.|+|+.||.|..+..++.. +.+|+++|+++..++.|+.++...+ ..++.++++|+.+........ .||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 6999999999999988776 5569999999999999999998875 557899999988764332111 289999755
No 332
>PLN02320 seryl-tRNA synthetase
Probab=97.07 E-value=0.00084 Score=78.22 Aligned_cols=130 Identities=12% Similarity=0.194 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCccce---e--ccCCCCceeeEe-cCHH----HHHHHHH-cc
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAREFV---V--PTHEPNKFYSLV-QSPQ----QLKQLLM-VG 414 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~f~---v--~~~~~~~~~~L~-~Spq----l~kq~l~-~~ 414 (883)
..++...+++.+++++ .++||.||.||.|.... -.|++.++ - .|.-.+..+||. +|-. +|....+ ..
T Consensus 232 ~a~Le~ALi~f~ld~~-~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 232 AVLLEMALVNWTLSEV-MKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCEEEECCccchHHHHHhcCCCcccccCceeEECCCceEEeecccccccccccccccCHh
Confidence 4457788999999999 57899999999998753 23322110 0 011113456773 2211 2222111 12
Q ss_pred CCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHHH---hccCCCCceeeeh
Q psy8372 415 SVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCYC---LNIPTRTFSRISY 478 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~i---~~~~~~~f~rity 478 (883)
.+. |+..+++|||.|.+... |.-+|+++|.-. |...+++.+..|+|+..+ ++.+.-||..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l 384 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEEDLFTSLGLHFKTLDM 384 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 233 99999999999987332 457999999965 778888888888887654 4456666665543
No 333
>KOG1709|consensus
Probab=97.07 E-value=0.0021 Score=66.01 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++|||.||-|-|.....+.+..+.+-+-++..+..++..+........+ +-.+.+-.++..+.-+++.||.|+-..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~n-Viil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKEN-VIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccc-eEEEecchHhhhccccccCcceeEeech
Confidence 578899999999999887666655556678899999999998876644333 3345555554444333568999988655
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-+|. +++..+.+.+.|+|||+|++-.-.
T Consensus 179 ~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 4666 669999999999999999876654
No 334
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.07 E-value=0.0023 Score=70.83 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++++||+||++|.++..++.+|. .|++||.++ |-.. +. ....+..+..|...+.+. .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~--~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LM--DTGQVEHLRADGFKFRPP--RKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hh--CCCCEEEEeccCcccCCC--CCCCCEEEEecc
Confidence 5788999999999999999999887 699999554 2111 11 345567777777766553 368999999876
Q ss_pred ccccChHHHHHHHHHHHHHhccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG 235 (883)
+.+....+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 33668888899999766
No 335
>PLN02678 seryl-tRNA synthetase
Probab=97.07 E-value=0.0011 Score=76.70 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCCCCceeeE-ecC--HH--HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHEPNKFYSL-VQS--PQ--QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~~~~~~~L-~~S--pq--l~kq~l 411 (883)
...+++..|++.+++++ .++||.||.||.|.... -.+++ -|.+.. .+...|| ++| |. +|....
T Consensus 172 ~ga~L~~AL~~y~ld~~-~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~--~~~~~yLi~TaE~~l~~~h~~~~ 248 (448)
T PLN02678 172 AGVLLNQALINFGLAFL-RKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTG--EGDDKYLIATSEQPLCAYHRGDW 248 (448)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCEEEECcccccHHHHhhcCCcccchhcCceecC--CCCceeeecccccccChHHhccc
Confidence 45889999999999999 57899999999997752 22222 233321 1223344 433 21 232211
Q ss_pred H-ccCCC-cEEEEeeceecCCCC----C---CCCcceecccccccCCCHHH--HHHHHHHHHHH---HhccCCCCceeee
Q psy8372 412 M-VGSVD-RYFQIARCYRDESTR----P---DRQPEFTQLDIELSFTTRDD--VMRLIEELLCY---CLNIPTRTFSRIS 477 (883)
Q Consensus 412 ~-~~~~~-rvf~I~~~FR~E~~~----~---~r~~EFt~le~e~~~~~~~d--vm~~~E~li~~---i~~~~~~~f~rit 477 (883)
+ -..+. |++++++|||.|.+. + -|.-+|+++|. ..+...++ ..+..|+|+.. +++.+.-||+.+.
T Consensus 249 ~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~-f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~ 327 (448)
T PLN02678 249 IDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVS 327 (448)
T ss_pred CCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEE-EEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 1 12233 999999999999873 2 23379999999 44655454 66666666653 4555666777653
No 336
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=97.04 E-value=0.00041 Score=61.74 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=30.6
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+|+|||++.|+ ..|++|||.+|.+|+++..+.
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~iQ~v~~~~~ 37 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKL 37 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeEEEEEEcCCc
Confidence 4899999999999 799999999999999986543
No 337
>KOG2798|consensus
Probab=96.97 E-value=0.0046 Score=66.92 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=97.0
Q ss_pred HHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH---hhcc----------------
Q psy8372 121 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI---LKDC---------------- 181 (883)
Q Consensus 121 lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~---~~~~---------------- 181 (883)
.|..+...........+||--|||.|+++..++..|+. +-|-+.|--|+-...=.+ ...+
T Consensus 137 ~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~ 215 (369)
T KOG2798|consen 137 ELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLS 215 (369)
T ss_pred HHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccc
Confidence 34444333333334678999999999999999999987 888888887764332111 0000
Q ss_pred -CCCc------------------cE--EEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 182 -DKLD------------------KC--YNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 182 -~~~~------------------~~--~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
...+ .| ..+|+.+.-... ..+.||+|+..+-+.... +....+..+..+|||||+.+
T Consensus 216 ~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 216 RDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEE
Confidence 0000 00 112322221111 124799999887666553 48899999999999999988
Q ss_pred EEecccCCCccccc-CCcccccccchhhhhhhhhccccccccc
Q psy8372 240 IKDNVASGVKNEYD-DEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 240 i~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
-..+.......... ....+...+.+++..+.+.-||++++++
T Consensus 294 NlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 294 NLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred eccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 76654221111011 1122445577788999999999998877
No 338
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=96.95 E-value=0.0005 Score=63.69 Aligned_cols=33 Identities=39% Similarity=0.728 Sum_probs=30.0
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
+|+++|||++.|+ ..|++|||.+|.+|+++.++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~ 36 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKD 36 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCC
Confidence 4899999999999 68999999999999998654
No 339
>KOG2187|consensus
Probab=96.94 E-value=0.0033 Score=72.26 Aligned_cols=79 Identities=22% Similarity=0.203 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
..+.+-..+......+.+..+||+.||||.++. .++++...|+||++++.+++-|++++..++..+.+|+++-+++..+
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceeh-hhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 344444444444455677899999999999998 4566677899999999999999999999988999999996666543
No 340
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0064 Score=68.39 Aligned_cols=108 Identities=18% Similarity=0.047 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC----------------------------------------eEEEEeCCHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD----------------------------------------KIDLLEQSSKFIEQ 172 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~----------------------------------------~V~gvD~S~~~le~ 172 (883)
.++..++|-=||+|.+++..+..+.+ .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45578999999999999988766531 27799999999999
Q ss_pred HHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc-ccChH-----HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 173 AKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILDE-----DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 173 A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~de-----d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+.|+...+ ...++|.++|+.++.... +.+|+|+|+.--- -+.++ -+..+.+.+++.++--+..+++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999999874 456799999999987663 5899999987321 12111 13455556667777667777765
No 341
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=96.90 E-value=0.00061 Score=61.01 Aligned_cols=33 Identities=36% Similarity=0.594 Sum_probs=28.9
Q ss_pred EEEEEEeeeeech----hhhhhhccccC-cEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV----DMFALLRDAYG-QVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~----~~f~~lRD~~G-~~qvv~~~~ 56 (883)
+|+|+|||++.|+ ..|++|||++| .+||++.++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~ 38 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAK 38 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCC
Confidence 4899999999997 57999999999 599998653
No 342
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=96.90 E-value=0.0006 Score=63.03 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEEEeeeeech----hhhhhhccccCcEEEEecCC
Q psy8372 24 TVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 24 ~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~ 56 (883)
+|+++|||+++|. ..|++|||.+|.+||++.+.
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~ 37 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAAS 37 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCC
Confidence 4899999999997 57999999999999999754
No 343
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0046 Score=64.02 Aligned_cols=104 Identities=16% Similarity=-0.050 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC------cCCC
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------DLNI 202 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~ 202 (883)
...++++|+|+||.+|.++..++..... .|+|+|+.|-- ....+.++++|+.+-... ....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 3467899999999999999877666444 49999986532 233468899998765421 1123
Q ss_pred CccEEEEcccc--------cccChHH-HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 203 KYDVIWIQWVL--------MFILDED-IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 203 ~FDlVvs~~vL--------~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.+|+|+|-++- +|..-.. ...++.-+..+|+|||.+++..+-.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 57999975543 3432222 3355666677999999999998543
No 344
>PLN02850 aspartate-tRNA ligase
Probab=96.82 E-value=0.00076 Score=79.92 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=43.4
Q ss_pred cccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 10 SHTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 10 ~~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
...|++|+.++.|++|+|+|||++.|. .+|++|||..|.+|+++...
T Consensus 69 ~~~i~~l~~~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~~iQ~v~~~~ 118 (530)
T PLN02850 69 WTDVSDLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGFTVQCVVFVS 118 (530)
T ss_pred EeEhhhcchhhCCCEEEEEEEEEEEccCCCeEEEEEEeCCcCEEEEEECC
Confidence 377999999999999999999999999 79999999999999998654
No 345
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=96.78 E-value=0.00089 Score=59.26 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=30.3
Q ss_pred EEEEEEeeeeech---hhhhhhccccCc--EEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQ--VQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~--~qvv~~~~~ 57 (883)
+|+++|||++.|. ..|++|||.+|. +||++.++.
T Consensus 1 ~v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~ 39 (82)
T cd04318 1 EVTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKEL 39 (82)
T ss_pred CEEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcc
Confidence 4899999999998 789999999997 999997643
No 346
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=96.78 E-value=0.00089 Score=78.15 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=40.3
Q ss_pred ccccccc-CCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCC
Q psy8372 10 SHTCGAL-RLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNH 56 (883)
Q Consensus 10 ~~~~~~~-~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~ 56 (883)
+.+|.++ +.+++|++|+|+|||++.|. ..|++|||.+|.+|+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~ 53 (450)
T PRK03932 3 RVSIKDILKGKYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKD 53 (450)
T ss_pred cEEHHHhcccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcC
Confidence 3456676 57899999999999999999 68999999999999988543
No 347
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.74 E-value=0.0036 Score=60.89 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=46.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
.+||||||.|..+..++..+.. +|+++|+++.+.+.++++...+...++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999988877765 799999999999999999876544445666655543
No 348
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=96.74 E-value=0.00078 Score=60.05 Aligned_cols=34 Identities=44% Similarity=0.723 Sum_probs=30.9
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+++|||++.|+ ..|+.|||.+|.+|+++..+.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~~iQ~v~~~~~ 37 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEE 37 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCeeEEEEEECCc
Confidence 4899999999999 699999999999999997654
No 349
>PLN02221 asparaginyl-tRNA synthetase
Probab=96.73 E-value=0.00091 Score=79.45 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=35.1
Q ss_pred CcCCCCEEEEEEeeeeechh-----hhhhhcccc--CcEEEEecC
Q psy8372 18 LSDVDKTVTLCGWLQNQRVD-----MFALLRDAY--GQVQVIVPN 55 (883)
Q Consensus 18 ~~~~g~~v~l~gWv~~~R~~-----~f~~lRD~~--G~~qvv~~~ 55 (883)
.+++|++|+|+|||++.|+. +|+.|||++ |.+|||+.+
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~ 90 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDS 90 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcC
Confidence 78999999999999999992 799999999 999999965
No 350
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.72 E-value=0.0049 Score=67.64 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+++|.|.=+..++.... ..+++.|+++.-+...+.+....+..++.....|.....+......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 5788999999999998888887754 38999999999999999999888777777777776655332222369999952
Q ss_pred c------cccccCh--------------HHHHHHHHHHHHHh----ccCcEEEEEeccc
Q psy8372 211 W------VLMFILD--------------EDIIKFLNLCKQIL----NKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d--------------ed~~~~l~~~~r~L----KPGG~lvi~~~~~ 245 (883)
. ++..-++ .-..++|..+.+.+ ||||+++-++.+-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 2 2222211 02457899999999 9999999998653
No 351
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=96.69 E-value=0.0011 Score=62.01 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=30.5
Q ss_pred EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 24 TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 24 ~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
+|+|+|||++.|. .+|++|||.+|.+|+++....
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~ 37 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDD 37 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCC
Confidence 5899999999999 799999999999999986543
No 352
>KOG2784|consensus
Probab=96.67 E-value=0.002 Score=70.27 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=45.9
Q ss_pred ccCCC--cEEEEeeceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 413 VGSVD--RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 413 ~~~~~--rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
-.++. |+|.|-++||||..+++|..||.|+|--++..+ +-++|.++++++..+
T Consensus 328 k~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 328 KKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred hCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 45554 999999999999999999999999998887764 899999999887654
No 353
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.64 E-value=0.019 Score=62.28 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccE
Q psy8372 108 SSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187 (883)
Q Consensus 108 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~ 187 (883)
++..-.+......+++.+.. .++..|||+|+|+|.++..++..+ .+|+++|+++.+++..+++.. ...+++.
T Consensus 9 gQnFL~~~~~~~~Iv~~~~~-----~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~--~~~~~~v 80 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALDL-----SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA--SNPNVEV 80 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHTC-----GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT--TCSSEEE
T ss_pred CcCeeCCHHHHHHHHHhcCC-----CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh--hccccee
Confidence 33333466667777777732 367899999999999999998888 679999999999999998776 3456788
Q ss_pred EEccCCCCCCCc-CCCCccEEEEcccccccChHHHHHHHHHHHHHhcc
Q psy8372 188 YNVGIQDFKPED-LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNK 234 (883)
Q Consensus 188 ~~~d~~~~~~~~-~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKP 234 (883)
+..|+.++.... ....-..|+++-.. ++. ..++.++...-+.
T Consensus 81 i~~D~l~~~~~~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 81 INGDFLKWDLYDLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp EES-TTTSCGGGHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred eecchhccccHHhhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 999998876432 11244566665443 442 2565666553333
No 354
>KOG2915|consensus
Probab=96.56 E-value=0.02 Score=61.08 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+|.+||+-|.|+|.++.+++..-.. +++-.|.-..-.+.|++.++... ..++++..-|+...-+......+|.|+.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 68999999999999999877765332 89999999999999999888773 4566788888766544332467898877
Q ss_pred cccccccChHHHHHHHHHHHHHhccCc-EEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNG-IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG-~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.. |. +..++..++.+||.+| +++.-.++-+ ..+.-.+++..+||..+
T Consensus 184 Dl-----Pa--Pw~AiPha~~~lk~~g~r~csFSPCIE---------------Qvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 184 DL-----PA--PWEAIPHAAKILKDEGGRLCSFSPCIE---------------QVQRTCEALRSLGFIEI 231 (314)
T ss_pred cC-----CC--hhhhhhhhHHHhhhcCceEEeccHHHH---------------HHHHHHHHHHhCCCceE
Confidence 43 33 5567788888999877 5554443322 12234566777777654
No 355
>PLN02603 asparaginyl-tRNA synthetase
Probab=96.55 E-value=0.0017 Score=77.10 Aligned_cols=47 Identities=21% Similarity=0.421 Sum_probs=41.3
Q ss_pred ccccccccC------CcCCCCEEEEEEeeeeech---hhhhhhccccCc--EEEEecC
Q psy8372 9 RSHTCGALR------LSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQ--VQVIVPN 55 (883)
Q Consensus 9 r~~~~~~~~------~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~--~qvv~~~ 55 (883)
++++|.++. .+++|++|+|+|||.+.|. ..|++|||++|. +||++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~ 145 (565)
T PLN02603 88 KKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTP 145 (565)
T ss_pred CceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEEC
Confidence 667888887 3788999999999999999 689999999986 9999854
No 356
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.55 E-value=0.014 Score=63.52 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---CCCc----cceeccCCCCceeeEe--cCHHHHHHHHHc-c
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---GGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMV-G 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~-~ 414 (883)
+.-+..+.+|.+.+++.| .++||.||.||++....- .+.. .+..-....|+...|+ -.||+.+-...- .
T Consensus 4 ~~~~~~~~~ie~~l~~~f-~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYF-NKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 445667888999999999 689999999999965421 1211 1222222347778887 555666533211 2
Q ss_pred CCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 415 SVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 415 ~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
+..|.|++|++||.+. +|+|+.+|+.+.+.+...
T Consensus 83 ~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~ 116 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQ 116 (272)
T ss_pred CCceEEEeccEeccCC-------CcceeceEEECCCchhHH
Confidence 4459999999999874 489999999885533333
No 357
>KOG0555|consensus
Probab=96.49 E-value=0.00095 Score=73.39 Aligned_cols=37 Identities=27% Similarity=0.595 Sum_probs=34.7
Q ss_pred cCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 19 SDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 19 ~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
++.|+.|.+.|||++.|. ++|+.|||++|++|||...
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gflqCVl~~ 159 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGFLQCVLSD 159 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCceEEEEEcc
Confidence 689999999999999998 8999999999999999865
No 358
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.38 E-value=0.04 Score=57.41 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+.++.||||-.|++..++...+.. .+++.|+++..++.|.+++..... ..++...+|. +.....++.+|+|+...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCccCCcCEEEEeC
Confidence 4667999999999999999988766 899999999999999999887633 3334444443 22333345799998766
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+--.+ ...+|.+-...|+.==++++.-.. ....++.++...+|.++.+..
T Consensus 94 MGG~l----I~~ILee~~~~l~~~~rlILQPn~-----------------~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 94 MGGTL----IREILEEGKEKLKGVERLILQPNI-----------------HTYELREWLSANSYEIKAETI 143 (226)
T ss_pred CcHHH----HHHHHHHhhhhhcCcceEEECCCC-----------------CHHHHHHHHHhCCceeeeeee
Confidence 53332 667888888777643355555421 245889999999999886654
No 359
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.37 E-value=0.034 Score=58.17 Aligned_cols=108 Identities=16% Similarity=0.009 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlV 207 (883)
+..++.+||-+|+++|....++..--. . .|++|+.|+......-..+... +++-.+-.|+.....- ..-+..|+|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEE
Confidence 446889999999999999888876522 2 7999999996655554433322 3444566676543211 112589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++.-+ .+++..-++.++...||+||.++++.-.
T Consensus 148 ~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 148 FQDVA----QPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp EEE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EecCC----ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 98643 1245677888999999999999998643
No 360
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.37 E-value=0.015 Score=64.10 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHh--hc-----cCCCccEEEccCCCCCCCcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEIL--KD-----CDKLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~--~~-----~~~~~~~~~~d~~~~~~~~~~~~F 204 (883)
+.-.+||-+|.|.|.-+..+++. +..+++-||++|.|++.++.+.. .. .+.+++.+..|+.++.... .+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccc
Confidence 34568999999999999888775 35589999999999999984322 11 3456677888888776544 3589
Q ss_pred cEEEEcc------cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQW------VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~------vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|.|+... ++..+- -..+-.-+++.|+++|.+++...
T Consensus 367 D~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecC
Confidence 9998632 222221 24677888999999999999763
No 361
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.027 Score=57.29 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHH----------HHHHHHHHHhhccCCCccEEEccCCCCCCCc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSK----------FIEQAKEEILKDCDKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~----------~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 199 (883)
.+++++|+|+=.|.|.++.-+... ++. .|+++-+.+. +-..+++. ...+.+.+......+.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN~e~~~~~~~A~~~-- 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYANVEVIGKPLVALGA-- 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhhhhhhCCcccccCC--
Confidence 468999999999999999744332 222 5666533322 11222221 11222333333333332
Q ss_pred CCCCccEEEEccccccc-----ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 200 LNIKYDVIWIQWVLMFI-----LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl-----~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+..|+++....-|.+ +......+.+.+++.|||||.+++.+........ .......++.+.....+..+.+|
T Consensus 120 -pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt~~~~ri~~a~V~a~veaaG 197 (238)
T COG4798 120 -PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDTITLHRIDPAVVIAEVEAAG 197 (238)
T ss_pred -CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhhhhhcccChHHHHHHHHhhc
Confidence 2356666653332222 2234678999999999999999999865432211 11222334456778888999999
Q ss_pred cccccccCCCCCc
Q psy8372 275 LKCVKSEKGEFSP 287 (883)
Q Consensus 275 f~vv~~~~~~~~P 287 (883)
|+...+....-.|
T Consensus 198 Fkl~aeS~ilaNp 210 (238)
T COG4798 198 FKLEAESEILANP 210 (238)
T ss_pred ceeeeeehhhcCC
Confidence 9987655444333
No 362
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=96.29 E-value=0.0022 Score=74.80 Aligned_cols=38 Identities=29% Similarity=0.569 Sum_probs=35.0
Q ss_pred cCCCCEEEEEEeeeeech---hhhhhhcccc--CcEEEEecCC
Q psy8372 19 SDVDKTVTLCGWLQNQRV---DMFALLRDAY--GQVQVIVPNH 56 (883)
Q Consensus 19 ~~~g~~v~l~gWv~~~R~---~~f~~lRD~~--G~~qvv~~~~ 56 (883)
+++|++|+|+|||++.|. .+|++|||.+ |.+||++.++
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~ 55 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGE 55 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCC
Confidence 688999999999999999 7899999999 9999998654
No 363
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=96.28 E-value=0.0019 Score=76.21 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=40.7
Q ss_pred ccccccccCCc----------CCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRLS----------DVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~~----------~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++... ..|++|+|+|||.+.|. .+|++|||.+|.+||++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~ 103 (505)
T PRK12445 42 RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDS 103 (505)
T ss_pred CccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCc
Confidence 57777666432 34889999999999999 799999999999999997654
No 364
>KOG1936|consensus
Probab=96.28 E-value=0.015 Score=65.27 Aligned_cols=115 Identities=19% Similarity=0.340 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-C---CCCCccceeccC---CCCceeeEe---cCHHHHHHHHHccCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-T---PGGAREFVVPTH---EPNKFYSLV---QSPQQLKQLLMVGSV 416 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~---~~ga~~f~v~~~---~~~~~~~L~---~Spql~kq~l~~~~~ 416 (883)
-..+|..|.+.+++-| ..+|..+|.||++.-- + .-|... +..|. ..|+-..|+ +-| |..-++|- ..
T Consensus 73 qm~lRe~if~~i~~vF-krhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVP-fARylAmN-ki 148 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVF-KRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVP-FARYLAMN-KI 148 (518)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccH-HHHHHHHc-cc
Confidence 3568999999999999 6899999999998431 1 112222 22232 335656665 555 55554443 32
Q ss_pred C--cEEEEeeceecCCC--CCCCCcceecccccccC-CC----HHHHHHHHHHHHHHH
Q psy8372 417 D--RYFQIARCYRDEST--RPDRQPEFTQLDIELSF-TT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 417 ~--rvf~I~~~FR~E~~--~~~r~~EFt~le~e~~~-~~----~~dvm~~~E~li~~i 465 (883)
. +.|+||++||-+.. ...|..||+|+|+-+++ .+ -.|++..+-+++..+
T Consensus 149 ~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 149 TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
Confidence 2 67999999999877 56677999999999998 33 567777777776654
No 365
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.0015 Score=63.86 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc------------CCcccccccchhhhh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD------------DEDSSVVRSLPQFCL 268 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~ 268 (883)
+++.|+|++..+++|+.-++...+++++++.|||||+|-++.+...-....+. .....+..+......
T Consensus 45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m~n 124 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMMFN 124 (185)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHH
Confidence 37999999999999999888999999999999999999999876443322221 112223335667778
Q ss_pred hhhhcccccccc
Q psy8372 269 LFSKANLKCVKS 280 (883)
Q Consensus 269 l~~~aGf~vv~~ 280 (883)
.+.++||.+-.-
T Consensus 125 ~~m~~~~~~kl~ 136 (185)
T COG4627 125 GFMDAGFVVKLL 136 (185)
T ss_pred HHHhhhheehhh
Confidence 888999876543
No 366
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=96.23 E-value=0.0033 Score=74.72 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=33.7
Q ss_pred CcCCCCEEEEEEeeeeech-----hhhhhhccccCc--EEEEecC
Q psy8372 18 LSDVDKTVTLCGWLQNQRV-----DMFALLRDAYGQ--VQVIVPN 55 (883)
Q Consensus 18 ~~~~g~~v~l~gWv~~~R~-----~~f~~lRD~~G~--~qvv~~~ 55 (883)
..++|++|+|+|||+++|+ .+|+.|||++|. +|||+.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~ 121 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQ 121 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECC
Confidence 3679999999999999999 379999999995 9999854
No 367
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=96.17 E-value=0.0035 Score=74.45 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=40.1
Q ss_pred ccccccCCcC-CCCEEEEEEeeeeech---hhhhhhccccCcEEEEecC
Q psy8372 11 HTCGALRLSD-VDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 11 ~~~~~~~~~~-~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
....+++.++ +|++|+|+|||++.|. .+|++|||.+|.+|+++..
T Consensus 66 ~~i~~l~~~~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~iQ~v~~~ 114 (550)
T PTZ00401 66 IPVAVLSKPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAV 114 (550)
T ss_pred EEHHHCCccccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcCEEEEEEC
Confidence 4566788777 9999999999999999 6899999999999999854
No 368
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=96.11 E-value=0.011 Score=69.91 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeecc
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFK 378 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~ 378 (883)
..++..|.+..|++|....++.||+||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 4588899999999996677899999999987
No 369
>KOG1122|consensus
Probab=96.03 E-value=0.033 Score=62.74 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.++.||||..|..|.=+.++++... ..|++.|.+..-+...+.++...+..+.-....|..+++.....++||-|+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 346789999999999997777776533 379999999999999999988776666555566666554333345899998
Q ss_pred E----cc--c------------------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 I----QW--V------------------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s----~~--v------------------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. +. + +.|+ .+++|-.+..++++||+|+-++++
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L----Qr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHL----QRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHH----HHHHHHHHHhhccCCcEEEEEeee
Confidence 4 33 1 1222 457888899999999999999864
No 370
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.00 E-value=0.067 Score=62.41 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-----Cc-cceeccCC-----------------------
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-----AR-EFVVPTHE----------------------- 393 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-----a~-~f~v~~~~----------------------- 393 (883)
...++...+.+.+.+.+..+.||.||-+|.|.+.. ..| +. .|.|....
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 44668888888887655356699999999998742 111 11 13332100
Q ss_pred -----CCceeeEecCHHHHHHHHHc------cCCC-cEEEEe-eceecCCCCC---CCCcceecccccccCCCHHHHHHH
Q psy8372 394 -----PNKFYSLVQSPQQLKQLLMV------GSVD-RYFQIA-RCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 394 -----~~~~~~L~~Spql~kq~l~~------~~~~-rvf~I~-~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
....++|+.+.+...-.+.. ..+. |+++++ +|||.|..++ .|.-||+|.|.-. +.+.++..+.
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~ 379 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEI 379 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHH
Confidence 12257787666532211111 2233 789955 7999998654 4458999999988 8899999888
Q ss_pred HHHHHHH---HhccCCCCceee
Q psy8372 458 IEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 458 ~E~li~~---i~~~~~~~f~ri 476 (883)
.++++.. +++.+.-||+++
T Consensus 380 ~e~mle~~~~~l~~L~Lpyrv~ 401 (520)
T TIGR00415 380 RDKTLELAEDAADELDLEWWTE 401 (520)
T ss_pred HHHHHHHHHHHHHHcCCCeEEe
Confidence 8888854 444566666665
No 371
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=95.96 E-value=0.0032 Score=74.25 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=40.4
Q ss_pred ccccccccCC----------cCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRL----------SDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~----------~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++.. ...|++|+|+|||.+.|. ..|++|||.+|.+|+++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~ 91 (496)
T TIGR00499 30 RTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDD 91 (496)
T ss_pred CCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCc
Confidence 5777766532 244889999999999998 689999999999999997654
No 372
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.026 Score=66.12 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC------CCccceeccCCCCceeeEe-cCHHH----HHHHHH
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG------GAREFVVPTHEPNKFYSLV-QSPQQ----LKQLLM 412 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~------ga~~f~v~~~~~~~~~~L~-~Spql----~kq~l~ 412 (883)
-++++.+|.+.+|+-| ++.|..||--|+|.++. +. |...|.+..+. +..+.|+ +|-+. +++.+-
T Consensus 46 g~rv~~kI~~iir~em-~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg-~~~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEM-DKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG-DRPLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHH-HhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC-CceeeeCCCcHHHHHHHHHHHhh
Confidence 4678999999999999 78999999999997741 11 22346666555 6677786 55443 333211
Q ss_pred c-cCCC-cEEEEeeceecCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 413 V-GSVD-RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 413 ~-~~~~-rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
+ ..+. ++|||...||+|.-.+ -|..||+|=|.|-.+.|.+++.+..++++.
T Consensus 124 SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 124 SYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred hhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 0 1122 8999999999996533 345899999999999999998888887774
No 373
>KOG3115|consensus
Probab=95.87 E-value=0.021 Score=58.31 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-------CCCccEEEccCCCCCCCcCCCCccE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-------DKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.-.+.|||||.|.++..+....+. -+.|.++-...-+..++++.... .+++.++..++..+.+. -|..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn----~f~k 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN----FFEK 136 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc----hhhh
Confidence 346899999999999988777666 78899988888887777766542 34455666666655432 1222
Q ss_pred EEEcccccccChHH-----------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDED-----------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded-----------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+-.++.+++.. -..++.+.+-+|++||.++..+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222222333211 2357788888999999998876
No 374
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.69 E-value=0.061 Score=58.55 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHh--CCC-eEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK--HFD-KIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~--g~~-~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
+.+|+=||||.=-++.-++.. +.. .|+++|+++.+++.|++..... .....+|+.+|..+..... ..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEE
Confidence 459999999987666545543 333 6899999999999999876622 3455689999987764332 47999988
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..... +..++..+++..+.+.++||..+++..
T Consensus 199 AalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 65443 222347799999999999999999885
No 375
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=95.66 E-value=1 Score=47.64 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCCeEEEcCCeeccCCCC------CCc-cceeccCC-CCceeeEecCHHHHHHHHHc-cCC---CcEEE
Q psy8372 354 FLMRTREFLATHRDFVEVETPTLFKRTPG------GAR-EFVVPTHE-PNKFYSLVQSPQQLKQLLMV-GSV---DRYFQ 421 (883)
Q Consensus 354 i~~~iR~f~~~~~gF~EV~TP~l~~~~~~------ga~-~f~v~~~~-~~~~~~L~~Spql~kq~l~~-~~~---~rvf~ 421 (883)
+-+.+...|.++.|.+||..|+|+....| |.. ...+.... ++..+-.-+|-.-+|...++ -+| +..|.
T Consensus 15 vKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlyt 94 (330)
T COG2502 15 VKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYT 94 (330)
T ss_pred HHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceee
Confidence 44455555556679999999999764222 221 12222111 12223344666667776443 333 58999
Q ss_pred Eeeceec-CC-CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC
Q psy8372 422 IARCYRD-ES-TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP 469 (883)
Q Consensus 422 I~~~FR~-E~-~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~ 469 (883)
=.++.|. |+ .+..|.-=--|-|||....+-+--++.+.+.+..|.+.+
T Consensus 95 hM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~i 144 (330)
T COG2502 95 HMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAI 144 (330)
T ss_pred echhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHH
Confidence 9999997 55 567777666788999988876666666666666666553
No 376
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.65 E-value=0.0044 Score=57.26 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=42.8
Q ss_pred EEEcCCCChHHHHHHHh---CC-CeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 139 LDVGAGIGRISKYLLAK---HF-DKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 139 LDVGCGtG~~~~~l~~~---g~-~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
||+|+..|..+..+++. .. .+++++|..+. .+.+++..... ...+++++.++..+..+....++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999988766653 12 25999999984 22222322222 23457888888765432211268999998653
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|-. +.....+..+.+.|+|||.+++.+
T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 321 346678899999999999999876
No 377
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=95.61 E-value=0.0051 Score=73.91 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred ccccccccCCcC---------CCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 9 RSHTCGALRLSD---------VDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 9 r~~~~~~~~~~~---------~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
++|++.++...+ .+++|+|+|||+++|. .+|++|||.+|.+||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~IQvv~~~~~ 145 (659)
T PTZ00385 85 GITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNELQVVGQVGE 145 (659)
T ss_pred ccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCceEEEEEECCc
Confidence 566666654332 1456999999999999 799999999999999997654
No 378
>KOG2324|consensus
Probab=95.60 E-value=0.055 Score=59.50 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-----C--CC--CCccceeccCCCCceeeEecCHHHHHHHHHccCCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-----T--PG--GAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVD 417 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-----~--~~--ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~ 417 (883)
-+|.-.++.+.++.-| ++-|-.+|.-|+|++. + .. |...|.+.-+ .++.|.|...-|=.--.+|+.-..
T Consensus 51 g~R~~~K~~~~l~~~m-qs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr-~gkq~cL~pThEE~iT~lmat~~~ 128 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEM-QSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDR-KGKQMCLTPTHEEDITALMATYIP 128 (457)
T ss_pred hHHHHHHHHHHHHHHH-HhccCeeEeecccChHHHHHhcCcccccchhheEeecc-CCCEeccCCchHHHHHHHHHhcCc
Confidence 3567788999999999 7899999999999763 1 12 4445666544 367778864443222222332222
Q ss_pred --------cEEEEeeceecCCC-C--CCCCcceecccccccCCCHHHHHHH---HHHHHHHHhccCCCCceee
Q psy8372 418 --------RYFQIARCYRDEST-R--PDRQPEFTQLDIELSFTTRDDVMRL---IEELLCYCLNIPTRTFSRI 476 (883)
Q Consensus 418 --------rvf~I~~~FR~E~~-~--~~r~~EFt~le~e~~~~~~~dvm~~---~E~li~~i~~~~~~~f~ri 476 (883)
+||||++=||+|-- + --|-.||.|-|.|---.|-+..|+- +.+.-..+|+.+..||-.+
T Consensus 129 lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv 201 (457)
T KOG2324|consen 129 LSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKV 201 (457)
T ss_pred cccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 89999999999943 2 2344899999999865666665543 3333345666666666544
No 379
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=95.52 E-value=0.021 Score=66.84 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCC-cEEEEeeceecCCCCCC---CCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 415 SVD-RYFQIARCYRDESTRPD---RQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
.+. |+.|+|+|||+|.+... |-.||||.|++ .|.+.+++.+.+..++..+
T Consensus 184 dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~ 237 (456)
T PRK04173 184 KLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELR 237 (456)
T ss_pred cCCeeeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHH
Confidence 344 89999999999987521 33899999998 5888777666666655444
No 380
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=95.37 E-value=0.013 Score=54.69 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=34.8
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDF 339 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldl 339 (883)
+++|+.++++++++++..++|+... ...+.++|+++||||+
T Consensus 68 g~~El~~~~~~ils~~~~plP~~~~--~~~~~~~r~~~R~ldl 108 (108)
T cd04322 68 GELSIFVKEFTLLSKSLRPLPEKFH--GLTDVETRYRQRYLDL 108 (108)
T ss_pred CCEEEEeCEeEEeeccCCCCCCCcc--CcCChhheeecccccC
Confidence 6799999999999999777887654 3467999999999996
No 381
>KOG2730|consensus
Probab=95.26 E-value=0.017 Score=59.73 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCc--CCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~ 210 (883)
....|+|.-||.|..+...+.+++. |++||++|.-+..|+.+++..+ ..+++|+++|+.+..... ....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 3458999999999999988888776 9999999999999999988764 457899999987653221 01235566654
Q ss_pred c
Q psy8372 211 W 211 (883)
Q Consensus 211 ~ 211 (883)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 4
No 382
>PRK10742 putative methyltransferase; Provisional
Probab=95.24 E-value=0.043 Score=58.57 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=62.6
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------cC---CCccEEEccCCCCCCCcCCCCccEE
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------CD---KLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------~~---~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+|||.-+|.|..+..++..|+. |+++|-++.+....+..+... .. .+++.+.+|..++.... ..+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-CCCCcEE
Confidence 8999999999999989999887 999999999988888776653 11 34677788877765432 3479999
Q ss_pred EEccccccc
Q psy8372 208 WIQWVLMFI 216 (883)
Q Consensus 208 vs~~vL~hl 216 (883)
++-.++.|=
T Consensus 169 YlDPMfp~~ 177 (250)
T PRK10742 169 YLDPMFPHK 177 (250)
T ss_pred EECCCCCCC
Confidence 999988874
No 383
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=95.23 E-value=0.024 Score=64.95 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=44.1
Q ss_pred cEEEEeeceecCC-CCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDES-TRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~-~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
|+|+||+|||+|. .+++|.++|+|+|.-++..+ +.|++.+++.+++++
T Consensus 209 RIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 209 KLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred EEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999999996 68899999999998888765 999999999999887
No 384
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.17 E-value=0.092 Score=55.96 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~ 196 (883)
...|...+.. ..++..+|+|||||.=-++..++..... .++|+|++..+++...+.....+. ..+....|+..-.
T Consensus 92 Ld~fY~~if~---~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG---RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC---CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH
T ss_pred HHHHHHHHHh---cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC
Confidence 4445555533 2345779999999998888776655443 899999999999999887665432 3355666666543
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccc-cccchhhhhhhhhccc
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV-VRSLPQFCLLFSKANL 275 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~~aGf 275 (883)
+. ...|+.+..-+++.+..... ..--++...+. .=.++++.+..+ +...+.+. ......+..++..-|.
T Consensus 168 ~~---~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~-~~~~vVSfPtrS-----L~gR~~gm~~~y~~~fe~~~~~~~~ 237 (251)
T PF07091_consen 168 PK---EPADLALLLKTLPCLERQRR-GAGLELLDALR-SPHVVVSFPTRS-----LGGRNKGMEQTYSAWFEALAAERGW 237 (251)
T ss_dssp TT---SEESEEEEET-HHHHHHHST-THHHHHHHHSC-ESEEEEEEES------------TTHHHCHHHHHHHHCCTTCE
T ss_pred CC---CCcchhhHHHHHHHHHHHhc-chHHHHHHHhC-CCeEEEeccccc-----cccCccccccCHHHHHHHhcccCCc
Confidence 33 47999999998888843222 22223333332 236666665433 12222222 2223355555555555
Q ss_pred cc
Q psy8372 276 KC 277 (883)
Q Consensus 276 ~v 277 (883)
.+
T Consensus 238 ~~ 239 (251)
T PF07091_consen 238 IV 239 (251)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 385
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.065 Score=58.96 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
..+|||||.|.|..+..+-.-.+. .++.++.|+..-+.......... .....-++.|-.+++.. +.|++|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a---d~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA---DLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc---ceeehhh
Confidence 457999999999876422222222 67788888876665544433321 12223344444444333 3677777
Q ss_pred EcccccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 209 IQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 209 s~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
...-|-|... ..+...++.+..++.|||.|+|.+.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6555444433 2355589999999999999999984
No 386
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.26 Score=50.69 Aligned_cols=141 Identities=15% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIW 208 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVv 208 (883)
+..++.+||-+|+.+|....++..--. ..+++|+.|+.+....-..+... +++-.+-.|+.....- ..-+..|+|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEE
Confidence 457899999999999999888876533 36999999998877665555432 3444566666543211 1114688887
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..-+ .+++..-+..++...||+||+++++.-..+-. . ..+.... ..+-..-+++.+|+++..-.-
T Consensus 151 ~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSId-v---T~dp~~v--f~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 151 QDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSID-V---TADPEEV--FKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred EecC----CchHHHHHHHHHHHhcccCCeEEEEEEeeccc-c---cCCHHHH--HHHHHHHHHhcCceeeEEecc
Confidence 7432 22446677888999999999888876433211 0 0000000 112334566777887765443
No 387
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=94.74 E-value=0.047 Score=64.36 Aligned_cols=120 Identities=21% Similarity=0.207 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--CC------ccceeccCC----------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--GA------REFVVPTHE---------------------- 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--ga------~~f~v~~~~---------------------- 393 (883)
..-.++...+.+.+++.+..+.||.||.||.|.+.. -. |- .-|.+....
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 345788889999998764256699999999997742 11 11 113332100
Q ss_pred ------CCceeeEe--cCHHHHHHHH--HccCCC---cEEE-EeeceecCCCCC---CCCcceecccccccCCCHHHHHH
Q psy8372 394 ------PNKFYSLV--QSPQQLKQLL--MVGSVD---RYFQ-IARCYRDESTRP---DRQPEFTQLDIELSFTTRDDVMR 456 (883)
Q Consensus 394 ------~~~~~~L~--~Spql~kq~l--~~~~~~---rvf~-I~~~FR~E~~~~---~r~~EFt~le~e~~~~~~~dvm~ 456 (883)
....|.|+ +-|-+|.-.. +...-+ |+|+ .|+|||.|...+ .|..||+|.|.- .|.+.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 01123343 3343332210 111112 8899 559999995322 355899999998 6889999999
Q ss_pred HHHHHHHHH
Q psy8372 457 LIEELLCYC 465 (883)
Q Consensus 457 ~~E~li~~i 465 (883)
..++++...
T Consensus 379 e~e~ll~~~ 387 (517)
T PRK00960 379 IRDELLKYA 387 (517)
T ss_pred HHHHHHHHH
Confidence 999998543
No 388
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.071 Score=61.74 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcC-CCeEEEcCCeecc
Q psy8372 349 RFRSKFLMRTREFLATH-RDFVEVETPTLFK 378 (883)
Q Consensus 349 ~~rs~i~~~iR~f~~~~-~gF~EV~TP~l~~ 378 (883)
.++..|.++-|++|..+ .+++||+||+|..
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 47888999999999765 5799999999977
No 389
>PLN02788 phenylalanine-tRNA synthetase
Probab=94.59 E-value=0.049 Score=62.19 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=37.7
Q ss_pred eeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccc
Q psy8372 777 LHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRD 851 (883)
Q Consensus 777 ~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRd 851 (883)
...|+.++|. |++| +-.+| |+ +++..|++++ .--.||||||||.|++.|+++||.
T Consensus 230 ~e~dI~~~g~WlEvlG-~G~vh-P~----Vl~~~gi~~~--------------~g~AfglgLeRLaml~~~I~DIRl 286 (402)
T PLN02788 230 FELEIFFKGEWLEVLG-CGVTE-QE----ILKNNGRSDN--------------VAWAFGLGLERLAMVLFDIPDIRL 286 (402)
T ss_pred eEEEEEECCEEEEEee-EEEEc-HH----HHHHcCCCCC--------------cEEEEEEeHHHHHHhhcCCchhhh
Confidence 5678989883 7877 44455 43 4455565432 124789999999999999877774
No 390
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.51 E-value=0.27 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCccEEEEcccccccCh--H----------------------------------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFILD--E----------------------------------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~d--e----------------------------------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++.++++++.++||++. + |...+|+.-++-|.|||.+++....
T Consensus 160 ~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~G 239 (386)
T PLN02668 160 ARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLG 239 (386)
T ss_pred CCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEec
Confidence 479999999999999862 1 3455677777889999999998866
Q ss_pred cC
Q psy8372 245 AS 246 (883)
Q Consensus 245 ~~ 246 (883)
..
T Consensus 240 r~ 241 (386)
T PLN02668 240 RT 241 (386)
T ss_pred CC
Confidence 54
No 391
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.43 E-value=0.26 Score=55.49 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh------------C---CC--eEEEEeCCH-HHHHHHHHHHhh---c-cCCCccEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK------------H---FD--KIDLLEQSS-KFIEQAKEEILK---D-CDKLDKCYN- 189 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~------------g---~~--~V~gvD~S~-~~le~A~~~~~~---~-~~~~~~~~~- 189 (883)
+...+|+|+||..|..+..++.. + .. +|..-|+-. +.-...+..-.. . ..+. -|..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~-~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN-YFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS-EEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce-EEEEe
Confidence 45679999999999999866642 1 11 577778543 222222221110 0 1112 1222
Q ss_pred --ccCCCCCCCcCCCCccEEEEcccccccCh-------------------------------------HHHHHHHHHHHH
Q psy8372 190 --VGIQDFKPEDLNIKYDVIWIQWVLMFILD-------------------------------------EDIIKFLNLCKQ 230 (883)
Q Consensus 190 --~d~~~~~~~~~~~~FDlVvs~~vL~hl~d-------------------------------------ed~~~~l~~~~r 230 (883)
+.+.+-.. +.++.|+++++.+|||++. +|...+|+.-++
T Consensus 94 vpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 94 VPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222112 2479999999999999842 156677777888
Q ss_pred HhccCcEEEEEecccCC
Q psy8372 231 ILNKNGIIIIKDNVASG 247 (883)
Q Consensus 231 ~LKPGG~lvi~~~~~~~ 247 (883)
-|+|||++++......+
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 89999999998876544
No 392
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=0.13 Score=58.99 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCcc---ceeccC-CCCceeeEecCHH-----HH-HHHHHcc
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGARE---FVVPTH-EPNKFYSLVQSPQ-----QL-KQLLMVG 414 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~~---f~v~~~-~~~~~~~L~~Spq-----l~-kq~l~~~ 414 (883)
...++-..+++.+=++.. ++||+|+.+|.|+... --|.+. |.-..+ -.+..+||....+ +| .+.+-..
T Consensus 172 ~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~ 250 (429)
T COG0172 172 KGARLERALIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEE 250 (429)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccc
Confidence 445666677778888884 8999999999998752 222221 322211 1123567864433 23 2222112
Q ss_pred CCC-cEEEEeeceecCCCC----C---CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceeeehHH
Q psy8372 415 SVD-RYFQIARCYRDESTR----P---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRISYND 480 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E~~~----~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~rity~e 480 (883)
.+. +++-.++|||.|... + .|.-+|..+|.-. +.+.++.....|+|+.. +++.+.-||+.+.+..
T Consensus 251 ~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lct 326 (429)
T COG0172 251 DLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCT 326 (429)
T ss_pred cCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeecc
Confidence 233 777889999999765 3 3447999999844 77777777777777764 5666888999888644
No 393
>KOG4589|consensus
Probab=94.34 E-value=0.2 Score=50.90 Aligned_cols=104 Identities=17% Similarity=0.004 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCC------CcCCC
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-FD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKP------EDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~------~~~~~ 202 (883)
..++.+|||+||.+|.++.-+.++. +. .|.|||+-.-. ...-+.++++ |+.+... ..++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3578999999999999998555543 33 78999974211 1111233333 5444321 11235
Q ss_pred CccEEEEcccc--------cccCh-HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 203 KYDVIWIQWVL--------MFILD-EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 203 ~FDlVvs~~vL--------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
..|+|++.+.- .|..- +-..+++.-+...++|+|.+++..+..+
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 78999986532 12110 1123344455566789999999886544
No 394
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=94.23 E-value=0.12 Score=58.88 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---C-CC----ccceeccCCCCceeeEe--cCHHH---HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---G-GA----REFVVPTHEPNKFYSLV--QSPQQ---LKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~-ga----~~f~v~~~~~~~~~~L~--~Spql---~kq~l 411 (883)
......+..|.+.+++.| ..+||..|+||+|....+ + |+ +.|++.... |+.+.|+ -.+++ +-..
T Consensus 14 p~e~~~~~~i~~~l~~~f-~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-g~~l~LRpD~T~pVaR~~~~~- 90 (390)
T COG3705 14 PLEARRKEEIRDQLLALF-RAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-GGRLGLRPDFTIPVARIHATL- 90 (390)
T ss_pred hhHHhhHHHHHHHHHHHH-HHhCCccccccccchhhhhhhccchhhhhhheEEecCC-CCeEEecccccHHHHHHHHHh-
Confidence 334456778888889999 689999999999977542 2 32 247775433 5557786 23333 3332
Q ss_pred HccCCCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHHH
Q psy8372 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCYC 465 (883)
Q Consensus 412 ~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~i 465 (883)
+.+.-.|+.+.|++||..+....+..||+|+-+|+-+.+ -.+++.++-+.++.+
T Consensus 91 ~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~ 148 (390)
T COG3705 91 LAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKAL 148 (390)
T ss_pred cCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHc
Confidence 334456999999999999555666679999999998865 456666655555443
No 395
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.21 E-value=0.15 Score=56.12 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-c-CCCccEEEccCC-CCCC--CcCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-C-DKLDKCYNVGIQ-DFKP--EDLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~-~~~~~~~~~d~~-~~~~--~~~~~~FDlVv 208 (883)
.-++||||||....--.|..+.+. +++|+|+++..++.|++++..+ . ...+++....-. .+.. ...++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 568999999998654334333233 6999999999999999998876 3 344555543222 1111 11135899999
Q ss_pred EcccccccCh
Q psy8372 209 IQWVLMFILD 218 (883)
Q Consensus 209 s~~vL~hl~d 218 (883)
|+.-++.-.+
T Consensus 183 CNPPFy~s~~ 192 (299)
T PF05971_consen 183 CNPPFYSSQE 192 (299)
T ss_dssp E-----SS--
T ss_pred cCCccccChh
Confidence 9998876543
No 396
>PHA01634 hypothetical protein
Probab=94.20 E-value=0.22 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.+.+|+|||++.|..+++++.+|+..|+++++++...+..+++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 47799999999999999999999999999999999999999877643
No 397
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.19 E-value=0.078 Score=58.58 Aligned_cols=76 Identities=21% Similarity=0.086 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC---c-CCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---D-LNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~~~FDlV 207 (883)
.++..++|.-.|.|..+..++.... ..|+|+|.++.+++.|++++... ..++.++..++.++... . ....+|.|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 4677999999999999999998744 48999999999999998877644 44556777776654310 0 12467777
Q ss_pred EE
Q psy8372 208 WI 209 (883)
Q Consensus 208 vs 209 (883)
++
T Consensus 98 L~ 99 (310)
T PF01795_consen 98 LF 99 (310)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 398
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.02 E-value=0.6 Score=49.65 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+||=+|=+.-. +..++.. .+.+|+.+|+++.+++.-++.+...+.+ ++.+..|+.+..|....++||++++...
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 57899999965543 3333333 3448999999999999999988887666 6889999988777766789999999764
Q ss_pred ccccChHHHHHHHHHHHHHhccCc-EEEEE
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNG-IIIIK 241 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG-~lvi~ 241 (883)
.-+ +.+.-++.+....||..| ..++.
T Consensus 122 -yT~--~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 122 -YTP--EGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -SSH--HHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -CCH--HHHHHHHHHHHHHhCCCCceEEEE
Confidence 222 557889999999998766 44443
No 399
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=94.01 E-value=0.067 Score=59.11 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=40.9
Q ss_pred eeeEEEe-cCe---EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 777 LHYDLVL-NGN---EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 777 ~~~Dlv~-~G~---Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
...|+.+ +|. |||+.++ +| |+ +++..|++.+ | |-..||||+|||+|+..|+++||+.
T Consensus 221 ~e~~i~~~~g~~w~eiG~~G~-vh-P~----Vl~~~gi~~~-~------------~v~afel~lerl~m~~~~i~dir~~ 281 (294)
T TIGR00468 221 AEIDVYCWEGKTWLEVLGAGM-FR-PE----VLEPMGIDPT-Y------------PGFAWGIGIERLAMLKYGIDDIRDL 281 (294)
T ss_pred EEEEEEEeCCCccEEEEEecc-Cc-HH----HHHHCCCCCC-C------------eEEEEEeeHHHHHHHHhCCcHHHHH
Confidence 4578888 676 8775554 55 53 4455676543 2 3457899999999999999999974
No 400
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.89 E-value=0.23 Score=48.53 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=58.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccccCh---------HHHHHHHHHH
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---------EDIIKFLNLC 228 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d---------ed~~~~l~~~ 228 (883)
+|+|+|+-+.+++.+++++.+... .+++++..+-..+...-.+++.|+|+.+. -++|. +.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 489999999999999999988743 35677777666554322124799998764 34443 2356788999
Q ss_pred HHHhccCcEEEEEeccc
Q psy8372 229 KQILNKNGIIIIKDNVA 245 (883)
Q Consensus 229 ~r~LKPGG~lvi~~~~~ 245 (883)
.++|+|||.+.+.....
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999998543
No 401
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.82 E-value=0.49 Score=51.73 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
.+++..+|.--|.|..+..++..... +++|+|.++.+++.|+++..... .++.+++..+.++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l 85 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL 85 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence 46689999999999999999998763 79999999999999999886543 3445666554443
No 402
>KOG1501|consensus
Probab=93.82 E-value=0.093 Score=59.17 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
.-|||||.|||.++..++..|...|++++.-..|.+.|++...+++ ...++++.-...+..... ....|+++.-....
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~-~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGG-SSRADIAVREDFDT 146 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecC-cchhhhhhHhhhhh
Confidence 4689999999999988888888899999999999999999887663 233444444333332221 12356665433332
Q ss_pred ccChHHHHHHHHHHHHHhc
Q psy8372 215 FILDEDIIKFLNLCKQILN 233 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LK 233 (883)
-+-.+.....++.+++.|.
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 2222223345566666553
No 403
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=93.82 E-value=0.31 Score=56.84 Aligned_cols=101 Identities=20% Similarity=0.343 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhc-CCCeEEEcCCeeccCC---CCC--------------------------------Ccc------
Q psy8372 349 RFRSKFLMRTREFLAT-HRDFVEVETPTLFKRT---PGG--------------------------------ARE------ 386 (883)
Q Consensus 349 ~~rs~i~~~iR~f~~~-~~gF~EV~TP~l~~~~---~~g--------------------------------a~~------ 386 (883)
.+++.|++.-|++|.. +.+..||+||+|.... ..| +..
T Consensus 41 ~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~ 120 (539)
T PRK14894 41 ELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRP 120 (539)
T ss_pred HHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCccee
Confidence 4677888888887754 4577899999987621 111 101
Q ss_pred ceeccC-------CCCceeeEe--cCHHH---HHHHHHccC--CC-cEEEEeeceecCCC-CC--CCCcceecccccccC
Q psy8372 387 FVVPTH-------EPNKFYSLV--QSPQQ---LKQLLMVGS--VD-RYFQIARCYRDEST-RP--DRQPEFTQLDIELSF 448 (883)
Q Consensus 387 f~v~~~-------~~~~~~~L~--~Spql---~kq~l~~~~--~~-rvf~I~~~FR~E~~-~~--~r~~EFt~le~e~~~ 448 (883)
|..... ......||+ ++--. |+.++-..+ +. -+-|||++||||=+ ++ -|..||+|.|+|. |
T Consensus 121 FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-F 199 (539)
T PRK14894 121 FNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEY-F 199 (539)
T ss_pred ccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEE-E
Confidence 111000 012357887 22212 555543322 22 68999999999933 22 3558999999998 6
Q ss_pred CC
Q psy8372 449 TT 450 (883)
Q Consensus 449 ~~ 450 (883)
.+
T Consensus 200 v~ 201 (539)
T PRK14894 200 VM 201 (539)
T ss_pred eC
Confidence 55
No 404
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.17 E-value=0.28 Score=54.86 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
..+|||.=||+|.=++..+..... .|+.-|+||.+++.++++...+.......+..|+..+.... ...||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDiDP-- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDIDP-- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEecCC--
Confidence 568999999999988777766544 79999999999999999998763333344446665544332 25788883321
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. .+..++..+.+.++.||++.++....
T Consensus 130 --FG--SPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 130 --FG--SPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CC--CCchHHHHHHHHhhcCCEEEEEeccc
Confidence 21 25678899999999999999987443
No 405
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=93.16 E-value=0.09 Score=60.31 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=46.1
Q ss_pred eeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 777 LHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 777 ~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
.+.|++++|.||++|..+..+ +++.+|++ -|..+|+||||||+|+..|.+|||..
T Consensus 349 R~adI~~g~~el~~G~fGEi~------VLe~fGI~---------------~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 349 DTIDIMHGDLELSSAVVGPIP------LDREWGID---------------KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred CeEEEEeCCEEEeeEEEEEEe------hhhhcCCC---------------CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 467999889999888888772 66777773 36889999999999999999999975
No 406
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.01 E-value=0.28 Score=45.52 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 165 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~ 165 (883)
...++-.+........+.....|+|||+|.+..-|...|+. =.|+|.
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 44455555444333334567999999999999777777877 678885
No 407
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.84 E-value=0.087 Score=49.08 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=32.9
Q ss_pred CccEEEEccccccc----ChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 203 KYDVIWIQWVLMFI----LDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 203 ~FDlVvs~~vL~hl----~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.||+|+|..|..++ .|+.+..+++++++.|+|||.|++.-..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 48999998877655 34678999999999999999999987543
No 408
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=92.83 E-value=0.051 Score=65.16 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=39.2
Q ss_pred cccccccccCCcC---------CCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALRLSD---------VDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~~~~---------~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
.|+|++.++.... .++.|+++|||.++|. ..|++|||..|.+||++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~iQv~~~~~~ 171 (585)
T PTZ00417 109 ERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLANFAF 171 (585)
T ss_pred cCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCeeEEEEEECCc
Confidence 3677776664321 2456999999999998 479999999999999997654
No 409
>KOG2920|consensus
Probab=92.80 E-value=0.086 Score=57.01 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH-------HH---hhccCCCccEEEccCCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE-------EI---LKDCDKLDKCYNVGIQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~-------~~---~~~~~~~~~~~~~d~~~~~~~~~~~ 202 (883)
-.+.||||+|||.|.....+...+...++..|.+...++.-.- .+ .............+..++.... .+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~-t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH-TE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh-cc
Confidence 4678999999999999987777775678899998887732110 00 0001111111112111222211 12
Q ss_pred --CccEEEEcccccccChHHHHHH-HHHHHHHhccCcEEEEEe
Q psy8372 203 --KYDVIWIQWVLMFILDEDIIKF-LNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 --~FDlVvs~~vL~hl~ded~~~~-l~~~~r~LKPGG~lvi~~ 242 (883)
.||+|.++.++.-... ...+ ......++++.|.+++..
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhhh
Confidence 7999999988877644 3344 556667778888877764
No 410
>KOG2793|consensus
Probab=92.67 E-value=0.57 Score=50.23 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh--ccCC---CccEEEccC---CCCCCCcCCCC-cc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--DCDK---LDKCYNVGI---QDFKPEDLNIK-YD 205 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~--~~~~---~~~~~~~d~---~~~~~~~~~~~-FD 205 (883)
..+||++|+|+|..+..++.....+|...|....+......+... .... .+.....+. .+..... +. ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~--~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL--PNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc--CCccc
Confidence 557999999999888755554555688888765443332221111 1111 111222222 2111111 23 99
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+++.++.+-.. ...++..++..|..+|.+++...
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999887644 66788889999999997777764
No 411
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.53 E-value=0.63 Score=52.14 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|+=+|+| .|..+..+++....+|+++|.|++-++.|++..... ++.....+.. ....+.||+|+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------~i~~~~~~~~-~~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------VINSSDSDAL-EAVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------EEEcCCchhh-HHhHhhCcEEEEC
Confidence 3678999999988 234566566633367999999999999999876543 2332211111 1112349999886
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
-. . ..+....+.|++||++++.-..
T Consensus 237 v~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 54 2 3566788999999999998765
No 412
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.53 E-value=0.27 Score=56.16 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.+.+|||.=||+|.=+...+.. +..+|+.-|+|+.+++..++++..+... .++....|+..+.. .....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 3468999999999988777776 4558999999999999999998766443 35677777766542 12368999954
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.. +. .+..+|..+.+.++.||.|.++.
T Consensus 128 DP----fG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DP----FG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC----CC--CccHhHHHHHHHhhcCCEEEEec
Confidence 32 21 26689999999999999999987
No 413
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.52 E-value=0.35 Score=53.55 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~ 179 (883)
.+++.++|.-||.|..+..++.... ..|+|+|.++.+++.|++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 4677999999999999998887632 4799999999999999987653
No 414
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.40 E-value=0.3 Score=53.49 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.8
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+|+|+-||.|.++..+...|+..+.++|+++.+++..+.+.... .+..|+.++........+|+++.......+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 79999999999998888888888899999999999988876532 456677766543212469999987654433
No 415
>KOG2198|consensus
Probab=92.39 E-value=0.81 Score=51.34 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=76.8
Q ss_pred ccCCCCCCeEEEEcCCCChHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc----
Q psy8372 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD-----KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---- 199 (883)
Q Consensus 129 ~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-----~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~---- 199 (883)
.+...++.+|||.++..|.=+..+++..+. .|++-|.++.=+.............+......++..++...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 344578999999999999988777776431 58899999877777766653333333334444444333220
Q ss_pred ---CCCCccEEEEcc------cccccCh---------------HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 200 ---LNIKYDVIWIQW------VLMFILD---------------EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 200 ---~~~~FDlVvs~~------vL~hl~d---------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
....||-|+|-- ++.+-++ .-...++.+..++||+||.++-++.+-.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 124799998632 2222111 0134678899999999999999997654
No 416
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.30 E-value=0.15 Score=59.05 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCCcCCCCccEEEEccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~FDlVvs~~v 212 (883)
..|+|..+|.|.++..|.....= .|+-+ ..+..+...-.+..- - +-.|. +.++.. +.+||+|.+..+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLI------G-~yhDWCE~fsTY--PRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLI------G-VYHDWCEAFSTY--PRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccc------h-hccchhhccCCC--Ccchhheehhhh
Confidence 46999999999999866554321 22222 122333322222110 0 11121 223332 379999999998
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.+..+ -++..++-++-|+|+|||.++|.|.
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 887643 3477899999999999999999883
No 417
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=92.09 E-value=0.064 Score=55.30 Aligned_cols=52 Identities=29% Similarity=0.597 Sum_probs=39.6
Q ss_pred eeeEEEec-----CeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHH
Q psy8372 777 LHYDLVLN-----GNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRL 839 (883)
Q Consensus 777 ~~~Dlv~~-----G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRl 839 (883)
.++|+.++ |.|||+.+....... +.++.. |+.++.+++.|||.|+|+|+||+
T Consensus 155 ~~~~i~~~~~~~~~~eig~~g~~~~~~~---~~~~l~--------~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 155 PGFEIEVDHPEGRGLEIGSGGYRQDEQA---RAADLY--------FLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred ceEEEEEEccCCCeEEEeeceeecCchh---Hhhhhh--------eecccccccCceeecCccCccCC
Confidence 57899999 999998888766432 223222 45556789999999999999996
No 418
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.08 E-value=0.41 Score=47.63 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHH-HHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ-AKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~-A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++++|=+|+..=-.-...+..|+.+|.-||..+--++. .+.+. .++...|...-. ....++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------ssi~p~df~~~~-~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------SSILPVDFAKNW-QKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------ccccHHHHHHHH-HHhhccchhhheechh
Confidence 56788889887666655667777788888865421111 11111 111111211100 0113689999999999
Q ss_pred cccC---------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 214 MFIL---------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 214 ~hl~---------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
+|+. +..-...+.++.++|||||.|++..+...+... + ..+..+ ....+..+ =.||+++..-.+.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-f--NahRiY-g~~rL~mm--~~gfe~i~tfs~~ 147 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-F--NAHRIY-GPIRLAMM--FYGFEWIDTFSGD 147 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-E--ecceee-cHhHHHHH--hCCcEEEeeeccC
Confidence 9971 111246778999999999999999987653211 1 111111 22233333 3578877665443
No 419
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=91.82 E-value=0.64 Score=56.00 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCCC--C-----CC-ccceeccCCCCceeeEecC--HHHHHHHHHc-cCC--Cc
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRTP--G-----GA-REFVVPTHEPNKFYSLVQS--PQQLKQLLMV-GSV--DR 418 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~~--~-----ga-~~f~v~~~~~~~~~~L~~S--pql~kq~l~~-~~~--~r 418 (883)
.++.+.+|++| -..||.|+-|..+++... . .. ....+...-....-+|++| |.+.+-+..- .+. -|
T Consensus 362 ~~~~~~ir~~L-~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~ 440 (552)
T PRK09616 362 EKLERAIRDLM-VGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQK 440 (552)
T ss_pred HHHHHHHHHHH-HhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCee
Confidence 45667789999 589999999999976521 0 00 1122222212233467766 3444332211 111 28
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
+||||+||+.+..+..+-.|++++.+-+++. |+.++...+|.++..+
T Consensus 441 lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l 489 (552)
T PRK09616 441 IFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL 489 (552)
T ss_pred EEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 9999999998654333436999999888874 7999999999998653
No 420
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.19 E-value=1.4 Score=47.87 Aligned_cols=144 Identities=8% Similarity=0.065 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHhhc---cCCCccEEEccCCC-CCCC--c--C-CCCc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS-SKFIEQAKEEILKD---CDKLDKCYNVGIQD-FKPE--D--L-NIKY 204 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S-~~~le~A~~~~~~~---~~~~~~~~~~d~~~-~~~~--~--~-~~~F 204 (883)
...|+.+|||-=.-...+-. .. .+..+|++ |++++.-++.+... ...+..++.+|+.+ +... . . .+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 34699999998766654422 22 24444444 45555555555432 23345677777651 1100 0 0 1234
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------c----c---ccCCcccccccchhhhhhhh
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------N----E---YDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~----~---~~~~~~~~~~s~~~~~~l~~ 271 (883)
-++++-.++.+++.++..++++.+.+...||+.+++......... . . .......+..+..+...+|.
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 578889999999998899999999999889999888654321100 0 0 11122223335678889999
Q ss_pred hcccccccc
Q psy8372 272 KANLKCVKS 280 (883)
Q Consensus 272 ~aGf~vv~~ 280 (883)
..||++...
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999988755
No 421
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.97 E-value=0.62 Score=55.94 Aligned_cols=115 Identities=25% Similarity=0.308 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCCcc------ceeccCCCCceeeEe--cCHH---HHHHHHHc
Q psy8372 348 LRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGARE------FVVPTHEPNKFYSLV--QSPQ---QLKQLLMV 413 (883)
Q Consensus 348 l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga~~------f~v~~~~~~~~~~L~--~Spq---l~kq~l~~ 413 (883)
..+|+.+.+.+|.-. .+.||.||.||.|.... ..|.-. |.+... ++.|.|. ..|. .|++.+-.
T Consensus 220 ~~ir~~le~y~~~~~-~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~--~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 220 ATIRNLLEDYVRTKL-RSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD--DREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred ccHHHHHHHHHHHHH-HhcCceEecCCeeeecccchhccchhhccccceeeccC--ChhheeeeccCHhHHHHHhcCCcc
Confidence 578999999999999 68899999999996642 233321 222221 2344553 5552 23332111
Q ss_pred -cCC-CcEEEEeeceecCCCCCC----CCcceecccccccCCCHHHHHHHHHHHHHHHh
Q psy8372 414 -GSV-DRYFQIARCYRDESTRPD----RQPEFTQLDIELSFTTRDDVMRLIEELLCYCL 466 (883)
Q Consensus 414 -~~~-~rvf~I~~~FR~E~~~~~----r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~ 466 (883)
-.+ -|++++|.|||.|.+... |-.+|||=|.-. |...+++.+.+.+.+..+.
T Consensus 297 YR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELIL 354 (589)
T ss_pred eeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHH
Confidence 001 289999999999998764 458999999866 6667777777776666554
No 422
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.52 E-value=0.62 Score=49.54 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=46.4
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHhhccC------CCccEEEccCCCCCCCcCCCCccE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE---EILKDCD------KLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~---~~~~~~~------~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+|||.-||-|.-+.-++..|+. |++++-|+-+....+. ++..... .+++.+.+|..++.. ....+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCE
Confidence 38999999999999877767764 9999999876665543 3332211 356888999888765 33579999
Q ss_pred EEEccccccc
Q psy8372 207 IWIQWVLMFI 216 (883)
Q Consensus 207 Vvs~~vL~hl 216 (883)
|++-.++.+-
T Consensus 155 VY~DPMFp~~ 164 (234)
T PF04445_consen 155 VYFDPMFPER 164 (234)
T ss_dssp EEE--S----
T ss_pred EEECCCCCCc
Confidence 9999988773
No 423
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=90.43 E-value=0.36 Score=57.22 Aligned_cols=57 Identities=32% Similarity=0.529 Sum_probs=40.6
Q ss_pred eeeEEEecC---eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccc
Q psy8372 777 LHYDLVLNG---NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853 (883)
Q Consensus 777 ~~~Dlv~~G---~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi 853 (883)
...++.++| .|||+.+ .+| |+ +++.+|++ .|...|+||+|||+|+..|+++|||..
T Consensus 420 ~~~~i~~~g~~w~eiG~~G-~l~-Pe----vl~~~gi~---------------~~v~~~el~le~l~m~~~~~~dir~l~ 478 (489)
T PRK04172 420 VEVEVYHEGLGWVELGGAG-IFR-PE----VLEPLGID---------------VPVLAWGLGIERLAMLRLGLDDIRDLY 478 (489)
T ss_pred EEEEEEECCCCeEEEEecc-ccC-HH----HHHHCCCC---------------CceEEEEEcHHHHHHHHhCCcHHHHHH
Confidence 456888877 5766444 455 43 34455553 245789999999999999999999864
Q ss_pred c
Q psy8372 854 A 854 (883)
Q Consensus 854 ~ 854 (883)
-
T Consensus 479 ~ 479 (489)
T PRK04172 479 S 479 (489)
T ss_pred h
Confidence 3
No 424
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=89.94 E-value=0.32 Score=44.96 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=30.2
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYL 337 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~l 337 (883)
+++|+.++++++++++. ++|+..+ .++++|++||||
T Consensus 68 ~~~Ei~~~~i~vl~~a~-~~pi~~~----~~~~~~~~~rhL 103 (103)
T cd04319 68 GGAEVHGEKLEIIQNVE-FFPITED----ASDEFLLDVRHL 103 (103)
T ss_pred CCEEEEEEEEEEEecCC-CCccCCC----CCHHHHhhccCC
Confidence 36999999999999994 7887643 379999999997
No 425
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.81 E-value=0.71 Score=48.15 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-----CCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEE
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-----HFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCY 188 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-----g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~ 188 (883)
.....+++-++ ++..|+|+|.-.|.-+..++.. +..+|+|+|+.......... ... ....++++
T Consensus 21 m~~~qeli~~~--------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i 90 (206)
T PF04989_consen 21 MVAYQELIWEL--------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFI 90 (206)
T ss_dssp HHHHHHHHHHH----------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEE
T ss_pred HHHHHHHHHHh--------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEE
Confidence 44455556665 4569999999999988766542 22389999996433222111 111 23567899
Q ss_pred EccCCCCCCC----cC--CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 189 NVGIQDFKPE----DL--NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 189 ~~d~~~~~~~----~~--~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++|..+.... .. ...-.+|+--. +|.. +...+.|+....++++|+++++.|...
T Consensus 91 ~Gds~d~~~~~~v~~~~~~~~~vlVilDs--~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 91 QGDSIDPEIVDQVRELASPPHPVLVILDS--SHTH-EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp ES-SSSTHHHHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ECCCCCHHHHHHHHHhhccCCceEEEECC--CccH-HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 9988765311 10 12334555432 3332 236677888999999999999988653
No 426
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.73 E-value=2.8 Score=49.84 Aligned_cols=126 Identities=13% Similarity=-0.002 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC---C--CeEEEEeCCHHHHHHHHHHHhhccCCC-ccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH---F--DKIDLLEQSSKFIEQAKEEILKDCDKL-DKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g---~--~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~ 187 (883)
..+...+++..++.. .+..+|.|..||+|.+........ . ..++|.|+.+.....|+.+..-++... ...
T Consensus 170 TP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 170 TPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred ChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 455566666666432 355699999999998876554431 1 358999999999999999876554331 122
Q ss_pred EEccCCCCCCC---cCCCCccEEEEccccc---cc-------------------C-hHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 188 YNVGIQDFKPE---DLNIKYDVIWIQWVLM---FI-------------------L-DEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 188 ~~~d~~~~~~~---~~~~~FDlVvs~~vL~---hl-------------------~-ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
...|...-+.. ...+.||.|+++.-+. +. + ......+++.+...|+|||+..|.
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 23332222211 1135799999866442 10 0 012368999999999999977776
Q ss_pred ec
Q psy8372 242 DN 243 (883)
Q Consensus 242 ~~ 243 (883)
.+
T Consensus 326 l~ 327 (489)
T COG0286 326 LP 327 (489)
T ss_pred ec
Confidence 64
No 427
>KOG4058|consensus
Probab=89.28 E-value=1.6 Score=42.75 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+.++.+|+|+|.|......+..|....+|+++++-.+..++-+.... ..+...|..-|+-..... .|.-|+...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~----dy~~vviFg 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR----DYRNVVIFG 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc----ccceEEEee
Confidence 455689999999999987677777446899999999999988776554 334456677666544432 244454443
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+=.-+++ +-.++..-|..+..++..-
T Consensus 147 aes~m~d-----Le~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 147 AESVMPD-----LEDKLRTELPANTRVVACR 172 (199)
T ss_pred hHHHHhh-----hHHHHHhhCcCCCeEEEEe
Confidence 3222222 3334444555555555443
No 428
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.10 E-value=1.6 Score=48.95 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCC-CccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI-KYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~FDlVvs~~vL 213 (883)
..+++|+=||.|.+..-+...|+.-+.++|+++.+++.-+.+... ......|+.......... .+|+++...-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 458999999999999888888988888999999999998888763 245666666555433223 78999986655
Q ss_pred cccCh-------HH----HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 214 MFILD-------ED----IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 214 ~hl~d-------ed----~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+.++- ++ +.--+.++...++| .+++.++... .... .......+...|++.|+.
T Consensus 78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g----l~~~----~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG----LLSS----KGQTFDEIKKELEELGYG 141 (328)
T ss_pred cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch----HHhc----CchHHHHHHHHHHHcCCc
Confidence 55422 11 22344555566677 5555554432 1111 223567899999999997
No 429
>KOG1562|consensus
Probab=88.59 E-value=1 Score=48.97 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+...+||=||.|.|......+.. ...+++-+|+....++..++..+.. ..+.+..+-+|-..+......++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45679999999999998766554 2337889999999999998877654 234455566665444332224799999
Q ss_pred EEcccccccChH--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~de--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.-..=.-.+.. -...+++.+.+.||+||++++..
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 964322222221 14578889999999999988875
No 430
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.43 E-value=4.8 Score=40.70 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=76.8
Q ss_pred EcCCCChHHHHHHHhCC-C-eEEE--EeCCHHHHHHHH---HHHhhc-cCCCccEEEccCCCCCCCc--CCCCccEEEEc
Q psy8372 141 VGAGIGRISKYLLAKHF-D-KIDL--LEQSSKFIEQAK---EEILKD-CDKLDKCYNVGIQDFKPED--LNIKYDVIWIQ 210 (883)
Q Consensus 141 VGCGtG~~~~~l~~~g~-~-~V~g--vD~S~~~le~A~---~~~~~~-~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~ 210 (883)
||=|.=.++..++.... . .+++ .|......+... .++... .....-....|+..+.... ..+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 55555566666666533 2 4555 465555444433 333332 1222234567777765433 35789999987
Q ss_pred ccccccC-------------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 211 WVLMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 211 ~vL~hl~-------------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
. .|.. .+-+..+++.+.++|+++|.+.|+-..... ...| ....+.+++||.+
T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W----~i~~lA~~~gl~l 147 (166)
T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSW----NIEELAAEAGLVL 147 (166)
T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Cccc----cHHHHHHhcCCEE
Confidence 5 3554 123678999999999999999998754322 1122 4457778889988
Q ss_pred ccccC
Q psy8372 278 VKSEK 282 (883)
Q Consensus 278 v~~~~ 282 (883)
+....
T Consensus 148 ~~~~~ 152 (166)
T PF10354_consen 148 VRKVP 152 (166)
T ss_pred EEEec
Confidence 76644
No 431
>PLN02734 glycyl-tRNA synthetase
Probab=86.55 E-value=0.39 Score=58.27 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=51.0
Q ss_pred CceeeEe----cCHHH-HHHHHHccC--CC-cEEEEeeceecCC-CCC--CCCcceecccccccCCCH--------HHHH
Q psy8372 395 NKFYSLV----QSPQQ-LKQLLMVGS--VD-RYFQIARCYRDES-TRP--DRQPEFTQLDIELSFTTR--------DDVM 455 (883)
Q Consensus 395 ~~~~~L~----~Spql-~kq~l~~~~--~~-rvf~I~~~FR~E~-~~~--~r~~EFt~le~e~~~~~~--------~dvm 455 (883)
+...||+ |..=+ +|.++-..+ +. -+-|||++||||= .+. -|..||+|.|+|. |.+- +++-
T Consensus 246 ~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~ 324 (684)
T PLN02734 246 LSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVA 324 (684)
T ss_pred CccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhh
Confidence 3467886 22211 566543332 22 6899999999993 333 3669999999998 6653 3333
Q ss_pred HHHHHHHHHHhccCCCCceeeehHHHHH
Q psy8372 456 RLIEELLCYCLNIPTRTFSRISYNDAIS 483 (883)
Q Consensus 456 ~~~E~li~~i~~~~~~~f~rity~ea~~ 483 (883)
++.-.|+..-.+.-..+-.+||..||++
T Consensus 325 ~~~l~l~~~~~q~~~~~~~~~t~~eAv~ 352 (684)
T PLN02734 325 DLEFLLFPREEQLGGQKAKPMRLGEAVS 352 (684)
T ss_pred hhhhhcccHhhhhccCCcccccHHHHHH
Confidence 3333333221111112224889999987
No 432
>KOG2539|consensus
Probab=86.34 E-value=2.3 Score=49.09 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCChH--HHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc--C-CCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRI--SKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG--I-QDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~--~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d--~-~~~~~~~~~~~FDlV 207 (883)
....++|+|.|.|.- +...+.+. ...++.||.|..|+.............. ..+... . ....+......||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g-~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIG-EPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcC-chhccccchhcccCCCCcccceeeE
Confidence 345678888877654 33333333 3379999999999999988877621110 111111 1 112222323569999
Q ss_pred EEcccccccChHH-HHHHH-HHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILDED-IIKFL-NLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~ded-~~~~l-~~~~r~LKPGG~lvi~~~ 243 (883)
+|...++++.... ..... .-..+..++||++++...
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9999999986522 22233 334566688999998874
No 433
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=85.72 E-value=0.59 Score=39.74 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=27.8
Q ss_pred EEEEEeeeee-ch---hhhhhhccccCcEEEEecC
Q psy8372 25 VTLCGWLQNQ-RV---DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 25 v~l~gWv~~~-R~---~~f~~lRD~~G~~qvv~~~ 55 (883)
|+++|||.++ |. ..|+.|+|.+|.+|+++..
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~ 35 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN 35 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc
Confidence 7999999988 54 7899999999999999866
No 434
>PRK11524 putative methyltransferase; Provisional
Probab=85.47 E-value=2.4 Score=46.61 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
..++..++... ..++..|||.=||+|..+..+...+- +.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~--S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS--SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 44555554322 25788999999999999975544444 599999999999999999763
No 435
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.02 E-value=2 Score=49.17 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc-CC-CCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQ-DFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d-~~-~~~~~~~~~~FDlVv 208 (883)
.++.+||.+|||. |..+..++.... .+++++|.++..++.+++.... ..+.....+ .. .+.....+..+|+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 5678999999988 777777776644 3699999999999998875321 111111110 00 000001113689888
Q ss_pred Eccc-----------cccc--ChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWV-----------LMFI--LDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~v-----------L~hl--~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-.-. +.|. +..+....+.++.++|+|+|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 7421 1111 00113457888999999999998875
No 436
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.64 E-value=2.7 Score=51.81 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-------C-----C-eEEEEeCCH---HHHHHHHH-----------HHhhc-----c
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-------F-----D-KIDLLEQSS---KFIEQAKE-----------EILKD-----C 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-------~-----~-~V~gvD~S~---~~le~A~~-----------~~~~~-----~ 181 (883)
+.-+|||+|-|+|.+....+... . . +++++|..| ..+..+.+ ..... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999766554321 1 2 788888533 33333321 11110 0
Q ss_pred C-------C--CccEEEccCCCCCCCcCCCCccEEEEccccc-ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc
Q psy8372 182 D-------K--LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251 (883)
Q Consensus 182 ~-------~--~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~ 251 (883)
. . ..+.+.+|+.+..+.- ...+|+++.-.--. +-|+-=-..+++.++++++|||.+.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 0 0 1134445554432211 24699998754211 1111002479999999999999988554
Q ss_pred ccCCcccccccchhhhhhhhhcccccccc
Q psy8372 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 252 ~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....+..|..+||++-+.
T Consensus 207 ----------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ----------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----------hHHHHHHHHHHcCCeeeec
Confidence 3557899999999998643
No 437
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.32 E-value=1.8 Score=44.97 Aligned_cols=42 Identities=24% Similarity=0.092 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~ 175 (883)
.++..|||.=||+|..+..+...+. +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 5688999999999999985555554 59999999999999874
No 438
>KOG2651|consensus
Probab=84.32 E-value=2.4 Score=47.70 Aligned_cols=43 Identities=33% Similarity=0.632 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEE 176 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~ 176 (883)
.+-..|.|+|+|.|+++. ++..++. .|.+||-|....+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr-~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSR-FLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHH-HHhhccCceEEEeccchHHHHHHHHH
Confidence 445689999999999997 5555555 899999998877777653
No 439
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=84.20 E-value=8.4 Score=41.15 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcC-CCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDL-NIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~-~~~FD 205 (883)
..+...+|+|+|+..=+..++.. +.. .++.+|+|...+....+.+... ..-.+.-+++|........+ .++==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35678999999999877766543 332 7899999999887655444332 22122334444332111110 12233
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++...++-.+.+++...++..++.+|+||-++++..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 3455678888888889999999999999999999865
No 440
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=83.99 E-value=2 Score=44.58 Aligned_cols=109 Identities=23% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCCC------CCCccceeccCCCCceeeEecCH--HHHHHHH--HccCCC--cE
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRTP------GGAREFVVPTHEPNKFYSLVQSP--QQLKQLL--MVGSVD--RY 419 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~~------~ga~~f~v~~~~~~~~~~L~~Sp--ql~kq~l--~~~~~~--rv 419 (883)
..+.+.+|++| -..||.||.|..++.... +.+....+...-....-+|++|- .+.+-+. ...+.. |+
T Consensus 3 ~~~~~~ir~~L-~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 3 QKLERKLRRLL-AGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred hHHHHHHHHHH-HHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 34667889999 579999999999976411 00011111111111112344432 2222211 112212 99
Q ss_pred EEEeeceecCCCCCCCC-cceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 420 FQIARCYRDESTRPDRQ-PEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 420 f~I~~~FR~E~~~~~r~-~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
||||+||..+.. + .|.+.+=+-+++ .|+.|+-..+|.++..+
T Consensus 82 FEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 82 FEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred EEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 999999976431 2 244444333333 37888888888888644
No 441
>KOG1035|consensus
Probab=83.94 E-value=3.9 Score=52.26 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC-CC-CC-CccceeccCCCCceeeEe----cCHHHHHHHHHccCC
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR-TP-GG-AREFVVPTHEPNKFYSLV----QSPQQLKQLLMVGSV 416 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~-~~-~g-a~~f~v~~~~~~~~~~L~----~Spql~kq~l~~~~~ 416 (883)
.-.+-.+|..+...+-+.| .++|++|++||-+... .+ .+ +....+..+ .|....|+ +----|.-+--+. .
T Consensus 928 ~~~~~~l~~~v~e~~~~if-r~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~-sG~~v~Lp~DLr~pfar~vs~N~~~-~ 1004 (1351)
T KOG1035|consen 928 TEINNELREYVVEEVVKIF-RKHGAIELETPPLSLRNACAYFSRKAVELLDH-SGDVVELPYDLRLPFARYVSRNSVL-S 1004 (1351)
T ss_pred chhHHHHHHHHHHHHHHHH-HHhcceeccCCccccccccchhccceeeeecC-CCCEEEeeccccchHHHHhhhchHH-H
Confidence 3445678899999999999 5899999999977443 22 22 222333222 24433332 2111111110001 2
Q ss_pred CcEEEEeeceecCCCCCCCC-cceecccccccCCC----HHHHHHHHHHHHHHHhccCCCCceeeehHHHHHH
Q psy8372 417 DRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT----RDDVMRLIEELLCYCLNIPTRTFSRISYNDAISL 484 (883)
Q Consensus 417 ~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~----~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~ 484 (883)
-|-|+|+++||-+. .+ | .|++.+++-+...+ -.|++.++-+++..++..-+ -+-+|.+.+.++-
T Consensus 1005 ~Kry~i~rVyr~~~-~~--hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n-~~i~lnH~~LL~A 1073 (1351)
T KOG1035|consen 1005 FKRYCISRVYRPAI-HN--HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGN-CDIHLNHADLLEA 1073 (1351)
T ss_pred HHHhhhheeecccc-cC--CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCc-eeEEeChHHHHHH
Confidence 36789999999998 22 6 59999999988875 68999999999999876632 3556677665543
No 442
>KOG1596|consensus
Probab=83.59 E-value=3.9 Score=43.34 Aligned_cols=107 Identities=14% Similarity=-0.023 Sum_probs=63.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-CCCCccEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-LNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~FDlV 207 (883)
+.+++.+||-+|+++|....+...- |.. -|++|+.|...-...-..+... .++-.+..|+....... +-.-.|+|
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEE
Confidence 4578999999999999987666554 333 6999998865433322222211 22334445554321110 01245666
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++.-. ++++...+.-++...||+||.++++.-
T Consensus 231 FaDva----qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 231 FADVA----QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eccCC----CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 65321 113345556678889999999999864
No 443
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=83.33 E-value=0.57 Score=54.09 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=36.1
Q ss_pred eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 786 NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 786 ~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
.||+|.++ -+|++ ++..|+++ |...||||+|||+|+..|+++||+.
T Consensus 295 iEIgG~Gm--VhPeV----L~~~GId~---------------PV~AFGIGVERlAMi~ygi~DIR~l 340 (533)
T TIGR00470 295 IEVATFGV--YSPIA----LAKYNIDV---------------PVMNLGLGVERLAMILYGYEDVRAM 340 (533)
T ss_pred EEEEeccc--cCHHH----HHHcCCCC---------------ceEEEEecHHHHHHHHhCCcHHHhh
Confidence 69887775 55654 45567753 4468999999999999999999994
No 444
>KOG1099|consensus
Probab=83.23 E-value=1.3 Score=46.39 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC----------eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD----------KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE------ 198 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~----------~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~------ 198 (883)
-.|++|+.+..|.++..+..+.+. .+++||+-+-+ ...-+..+++|++.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 358999999999999866654221 28889874321 223345677887765321
Q ss_pred cCCCCccEEEEccc-----ccccCh----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 DLNIKYDVIWIQWV-----LMFILD----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ~~~~~FDlVvs~~v-----L~hl~d----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++.|+|+|..+ +|.+.. +-+.++|.-...+|||||.|+-.-+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 11358999999653 444421 2355677778899999999987653
No 445
>KOG0822|consensus
Probab=82.95 E-value=2.6 Score=49.23 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCChHHHHHHHh---CCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK---HFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~---g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...|+=+|+|-|-+....++. ... .+++|+-+|.++-..+.+.-..-.+.++.+..|+..+.++. .+.|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~--eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPR--EQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCch--hhccchHH
Confidence 456889999999887655442 111 69999999999888877544445667799999999988542 58898887
Q ss_pred cccccccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
- .|--+.| |--...|..+-+.|||.|+.+=..
T Consensus 446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred H-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 4 3344433 334578999999999998765443
No 446
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=82.51 E-value=3.7 Score=44.21 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCC---------CeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEE-ccCCCCCCCcC
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHF---------DKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYN-VGIQDFKPEDL 200 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~---------~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~-~d~~~~~~~~~ 200 (883)
.-+|+|+|+|+|.++..++.... .+++.||+|+.+.+.-++++.... ........ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p---- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP---- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----
Confidence 46999999999999999886411 269999999999888888776531 01111222 1222221
Q ss_pred CCCccEEEEcccccccC
Q psy8372 201 NIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ 217 (883)
..-+|+++.++.-+|
T Consensus 95 --~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 --FPGFIIANELFDALP 109 (252)
T ss_dssp --CCEEEEEESSGGGS-
T ss_pred --CCEEEEEeeehhcCc
Confidence 345677888887775
No 447
>PRK13699 putative methylase; Provisional
Probab=82.37 E-value=4.2 Score=43.26 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||.=||+|..+......+. .++|+|+++...+.|.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4688999999999999985555555 4999999999999999987654
No 448
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=81.77 E-value=2.6 Score=46.50 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI 216 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl 216 (883)
+++|+=||.|.++.-+...|+..+.++|+++.+.+.-+.+.. .....|+.++.....++.+|+++...-.+-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCceE
Confidence 799999999999998888898889999999999999988876 3577777776543322259999975543332
Q ss_pred C---------hH--HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 217 L---------DE--DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 217 ~---------de--d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+ ++ .+-.-+-++.+.++| .+++.++... ...... ......+...|++.|+.+.
T Consensus 75 S~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~----l~~~~~---~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPG----LLSSKN---GEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp STTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGG----GGTGGG---HHHHHHHHHHHHHTTEEEE
T ss_pred eccccccccccccchhhHHHHHHHhhccc--eEEEecccce----eecccc---ccccccccccccccceeeh
Confidence 1 11 122233444455677 3344454321 111111 1234577788888888764
No 449
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.63 E-value=7.5 Score=46.30 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCCChH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC-----------CCCC--
Q psy8372 133 PGKTRVLDVGAGIGRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-----------FKPE-- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~-~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~-----------~~~~-- 198 (883)
.++.+||=+|||.=.+ +...+......|+++|.++.-++.+++.... ++..+..+ ....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~-------~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE-------FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-------EEEeccccccccccchhhhcchhHH
Confidence 4688999999998554 4434443233699999999999999874332 22111111 0000
Q ss_pred --------cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 199 --------DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 199 --------~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.-..+|+|+.......-+. +..+.+++.+.+||||.++...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEc
Confidence 00035899998664432211 3334599999999999988765
No 450
>KOG2783|consensus
Probab=81.42 E-value=0.8 Score=51.15 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCCCccceec--cCCCCceeeEe--------cCHHHHHHHHHccC
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLV--------QSPQQLKQLLMVGS 415 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~ga~~f~v~--~~~~~~~~~L~--------~Spql~kq~l~~~~ 415 (883)
.+=.+|..|...+.......-...+..+|+.+....-+.-.|+-+ .+.+...||.. +|.-. --++..+
T Consensus 73 plg~lr~~i~~~f~~~~~~~fs~~~~~spvvt~~qnfdsl~~p~dh~sr~ksdtyy~n~~~~lr~htsahq--~e~~~~~ 150 (436)
T KOG2783|consen 73 PLGILRQRIEDYFYKTYRNLFSIFENESPVVTTYQNFDSLLFPADHVSRSKSDTYYVNHTHCLRAHTSAHQ--HELFQKG 150 (436)
T ss_pred chhHHHHHHHHHHHHhhcccchhccCCCceeehhhhcccccCcccccccCcCCceeecceeeehhcchhhH--HHHHHhc
Confidence 344566677777666652223567888888865433333333332 22334444442 33311 1134555
Q ss_pred CCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 416 VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 416 ~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
.+.--..|-+||-..++..|.|=|.|+|--..+.
T Consensus 151 ~~~flv~~DVyrrdeidsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 151 LDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ccccceeeeeeeeccccccccceeccccceeEEe
Confidence 6666788999999999999999999999766553
No 451
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.37 E-value=4.5 Score=42.69 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHH--hCCC-eEEEEeCCHHHHHHHHHHHhhc-c-CCCccEE-EccCCCCCCC--cCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLA--KHFD-KIDLLEQSSKFIEQAKEEILKD-C-DKLDKCY-NVGIQDFKPE--DLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~--~g~~-~V~gvD~S~~~le~A~~~~~~~-~-~~~~~~~-~~d~~~~~~~--~~~~~F 204 (883)
.+..++||||.|.- +++-+- +-+. ..+|.|+++..++.|+.....+ . .+.++.. +.|-..+-+. ..++.|
T Consensus 77 ~~~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 77 GKNIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred cCceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 35678999987764 332221 1122 5899999999999999988765 1 1222222 2232222221 114689
Q ss_pred cEEEEccccccc
Q psy8372 205 DVIWIQWVLMFI 216 (883)
Q Consensus 205 DlVvs~~vL~hl 216 (883)
|+++|+.-+|.-
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999998744
No 452
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.85 E-value=7.8 Score=41.99 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+.+|+=+| -.-..+..++..+ +.+|..+|+++..+..-.+-+.+.+.++++.+..|+....|......||+.+....
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 466899999 4445555444444 44899999999999999998888888888899999988777666689998876543
Q ss_pred ccccChHHHHHHHHHHHHHhccC---cEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN---GIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG---G~lvi~~ 242 (883)
+.+ ..+..++.+=...||.- |++.++.
T Consensus 231 -eTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 231 -ETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred -hhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 344 33778888888888865 7887776
No 453
>KOG1227|consensus
Probab=78.47 E-value=1.6 Score=47.60 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISK-YLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~-~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+..|.|+=+|.|+++. .+...|+..|+++|.+|..++..++.+..+.. .+...+.+|-.... +....|-|...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~---~~~~AdrVnLG 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK---PRLRADRVNLG 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC---ccccchheeec
Confidence 456789999999999998 77788888999999999999999998876521 12223333333222 23467777653
Q ss_pred ccccccChHHHHHHHHHHHHHhccCc--EEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNG--IIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG--~lvi~~~~ 244 (883)
. +|. -.+-.-.+-++|||.| .+-|..+.
T Consensus 270 L----lPS--se~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 270 L----LPS--SEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred c----ccc--cccchHHHHHHhhhcCCcEEEEeccc
Confidence 3 333 2345555778888744 45555543
No 454
>KOG2509|consensus
Probab=77.84 E-value=6.7 Score=44.91 Aligned_cols=130 Identities=16% Similarity=0.328 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC----CCC----CCcc-ceeccCCCCceeeEe-cCHH----HH-HH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR----TPG----GARE-FVVPTHEPNKFYSLV-QSPQ----QL-KQ 409 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~----~~~----ga~~-f~v~~~~~~~~~~L~-~Spq----l~-kq 409 (883)
.....+-..++++.-+|+ .++||+-+.||.|... .|+ +..+ +.+. ..+..-||. +|-| +| .+
T Consensus 182 g~~a~LeqALi~yal~~l-~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~l--d~~~~~~LiaTaE~plAa~~~~e 258 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFL-NAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVL--DGGDEKYLIATAEQPLAAYHRDE 258 (455)
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCccccCchhhhHHHHHHhccCcCCCcceEEee--cCCccceeEeeccchhhhhhccc
Confidence 456678888999999999 6899999999999774 122 1111 2222 122233454 4443 11 11
Q ss_pred HHHccCCC-cEEEEeeceecCCCC----CC---CCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceeeeh
Q psy8372 410 LLMVGSVD-RYFQIARCYRDESTR----PD---RQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRISY 478 (883)
Q Consensus 410 ~l~~~~~~-rvf~I~~~FR~E~~~----~~---r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~rity 478 (883)
.+--..+. |+=-.++|||.|... +. |--||+-+|.-. ..+.++--++.|+||.. ++.++.-||+.+..
T Consensus 259 ~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m 337 (455)
T KOG2509|consen 259 WLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLNM 337 (455)
T ss_pred ccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHHHHHhCCceeEecC
Confidence 11111222 677889999999632 32 225899988633 44444455555555543 33445566666544
No 455
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=76.67 E-value=7.8 Score=40.62 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-C--CCeEEEEeCCHHHHHHHHHHH
Q psy8372 112 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-H--FDKIDLLEQSSKFIEQAKEEI 177 (883)
Q Consensus 112 ~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g--~~~V~gvD~S~~~le~A~~~~ 177 (883)
.+..+.+.++++..+... ....+-++-|-.||.|++.--+.-. + ...|.|-|+++.+++.|++|+
T Consensus 30 ~FPVRLAsEi~qR~l~~l-~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 30 AFPVRLASEIFQRALHYL-EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp ---HHHHHHHHHHHHCTS-SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhh-cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 345666667777664332 2245668999999999986534322 2 227999999999999999885
No 456
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=76.41 E-value=2.1 Score=45.51 Aligned_cols=56 Identities=30% Similarity=0.514 Sum_probs=44.0
Q ss_pred ceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC-CCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 776 GLHYDLVLNGNEIGGGSIRIHSSELQESILHFL-NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 776 ~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~-~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+..++.-+||+||. |-.-|++. |++. -|..+=+.-|||||.|.|-|.+||-|+.-
T Consensus 127 GlGWEVWldGMEIT-----------QFTYFQQvGGi~~-------------~pv~~EITYGLERiamylQ~vd~v~dl~w 182 (283)
T PRK09348 127 GLGWEVWLDGMEVT-----------QFTYFQQVGGIEC-------------KPVTGEITYGLERLAMYLQGVDNVYDLVW 182 (283)
T ss_pred ccceEEEECCeeee-----------eeeeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceeeeec
Confidence 47899999999997 44455554 3432 36778899999999999999999999764
Q ss_pred C
Q psy8372 855 F 855 (883)
Q Consensus 855 F 855 (883)
=
T Consensus 183 ~ 183 (283)
T PRK09348 183 N 183 (283)
T ss_pred C
Confidence 3
No 457
>KOG2671|consensus
Probab=76.22 E-value=5.7 Score=44.26 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHH-------HHHHhhcc--CCCccEEEccCCCCCCCcCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA-------KEEILKDC--DKLDKCYNVGIQDFKPEDLNIK 203 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A-------~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~ 203 (883)
.+|.-|.|-=.|||.+....+..|. .|.|.|++-.|+... +.+++..+ .....++.+|....+.-. +..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs-n~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS-NLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-cce
Confidence 6788999999999999875555554 599999998888732 33444443 223466778877654433 568
Q ss_pred ccEEEEccc------------------------ccccCh-------HHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 204 YDVIWIQWV------------------------LMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 204 FDlVvs~~v------------------------L~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
||.|+|..- ..|.|. .-+...|.-.++.|.-||++++--+...
T Consensus 285 fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~~ 358 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTIT 358 (421)
T ss_pred eeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCchh
Confidence 999998541 122221 1244567778899999999998776443
No 458
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=76.22 E-value=6.7 Score=43.27 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC----CCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~FDlV 207 (883)
.++.+||..||| .|..+..++......|++++.++...+.+++.... .+........ .......+|+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD-------EVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------EEEcCCCcCHHHHHHHhcCCCceEE
Confidence 567799998876 36666666665444599999999988888653211 1111111000 00112468988
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..... ...+..+.+.|+++|.++...
T Consensus 237 id~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT--------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEEC
Confidence 753211 246778899999999998765
No 459
>KOG1253|consensus
Probab=76.05 E-value=1.8 Score=50.18 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCC--CcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKP--EDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~--~~~~~~FDlV 207 (883)
.++.+|||.=|++|.-++..+..- ..+|++.|.++..++..+++...+. ...++....|+..+.- ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 456799999999999888887763 4489999999999999998887652 2334455555543321 1113589999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
-...- -.+..+|..+.+.++.||.|+++..
T Consensus 188 DLDPy------Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPY------GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCC------CCccHHHHHHHHHhhcCCEEEEEec
Confidence 54321 1145789999999999999999763
No 460
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=75.88 E-value=2.1 Score=45.39 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=43.5
Q ss_pred ceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 776 GLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 776 ~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+..++.-+||+||. |-.-|++.| ++. -|..+=+.-|||||.|.|-|.+||-|..-
T Consensus 123 GLGWEVWldGMEIT-----------QFTYFQQvGGi~~-------------~pv~~EiTYGLERiamylQ~vd~v~dl~w 178 (279)
T cd00733 123 GLGWEVWLDGMEVT-----------QFTYFQQVGGIPC-------------KPISVEITYGLERIAMYLQGVDNVYDIEW 178 (279)
T ss_pred ccccEEEECCeeee-----------eeeeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceecccc
Confidence 47899999999997 444555543 432 36778899999999999999999998753
No 461
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=75.32 E-value=8.9 Score=43.28 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC---------CCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH---------FDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g---------~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
+....++|+|.|.|.++..++... ..++.-|++|+...+.=++.+...
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 455689999999999999888642 237999999999988877776643
No 462
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.82 E-value=6.8 Score=43.75 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=76.5
Q ss_pred EEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccC
Q psy8372 138 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 138 VLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ 217 (883)
|+|+-||.|.++.-+...|+..+.++|+++.+++..+.+... ..+..|+.++..... ..+|+++...-...++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~-~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDI-PDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhC-CCcCEEEecCCCcccc
Confidence 589999999999888888888778899999999988887653 235567776654332 2589998655433332
Q ss_pred h--------HHHHHHHHHHHHHh---ccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 218 D--------EDIIKFLNLCKQIL---NKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 218 d--------ed~~~~l~~~~r~L---KPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
. +....++.++.+++ +| .+++.++...- ..... ......+...|+..|+.+.
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l----~~~~~---~~~~~~i~~~l~~~GY~v~ 136 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGL----VSHDK---GRTFKVIIETLEELGYKVY 136 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHH----Hhccc---chHHHHHHHHHHhCCCEEE
Confidence 1 11223444444444 55 35555543211 11111 1123466777778887653
No 463
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.75 E-value=15 Score=37.81 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc----C-CCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED----L-NIK 203 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~----~-~~~ 203 (883)
++..|+++|.-.|..+.+.+.. |-+ +|.++|++-..++.+... .+.+.|++++..+..-.. . ++.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4568999999999887766542 422 799999997766554433 334578887766542110 0 122
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
--+.+|-.+-||. +...+.++...++|..|-++++.+..-.+.
T Consensus 144 ~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 144 PKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 2344555666777 457788899999999999999998665443
No 464
>KOG0024|consensus
Probab=73.90 E-value=8.9 Score=42.61 Aligned_cols=103 Identities=13% Similarity=0.005 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEcCCCCh-HHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc--CCCC----CCCcCCC
Q psy8372 131 SDPGKTRVLDVGAGIGR-ISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG--IQDF----KPEDLNI 202 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~-~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d--~~~~----~~~~~~~ 202 (883)
....+.+||=+|+|+=. .+...++. |..+|+.+|+++.-++.|++.....- ...... ..++ .......
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~----~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT----DPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE----eeccccccHHHHHHHHHhhcccc
Confidence 34678999999999744 44433332 56699999999999999998433221 111110 0110 0011013
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.+|+.+...-+ ...++.+..++++||.+++.....
T Consensus 242 ~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 242 QPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred CCCeEEEccCc--------hHHHHHHHHHhccCCEEEEeccCC
Confidence 58888765432 346667788999999988877543
No 465
>PRK13699 putative methylase; Provisional
Probab=73.69 E-value=4.5 Score=43.04 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=43.8
Q ss_pred EEEccCCCCCCCcCCCCccEEEEccccc----c-----cC----hHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLM----F-----IL----DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD 253 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~----h-----l~----ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~ 253 (883)
++.+|..+....-+++++|+|+...-.. + +. .+-....+.+++|+|||||.+++...
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~---------- 73 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG---------- 73 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec----------
Confidence 4455554432222235788888753211 0 00 02245788999999999998876431
Q ss_pred CCcccccccchhhhhhhhhcccccc
Q psy8372 254 DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 254 ~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+.....+...++++||.+.
T Consensus 74 ------~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 74 ------WNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred ------cccHHHHHHHHHHCCCEEe
Confidence 0112345667788888754
No 466
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=72.78 E-value=15 Score=39.54 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHH---h-CC--CeEEEEeCCH--------------------------HHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLA---K-HF--DKIDLLEQSS--------------------------KFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~---~-g~--~~V~gvD~S~--------------------------~~le~A~~~~~~~ 180 (883)
.-.+.|+|+||-.|..+..+.. . +. ..+++.|.=+ ..++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3456899999999987754322 1 11 2677876321 1233444443332
Q ss_pred c--CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 181 C--DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 181 ~--~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+ ..++.++.+.+.+..+..+.+++-++..-.-+. +.....|..++..|.|||++++.+..
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 2 245678888876654443233443333322211 33568899999999999999998854
No 467
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.55 E-value=13 Score=39.18 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlVv 208 (883)
.++.+||-.|+|. |..+..++.....+|++++.++...+.+++..... .+.....+... ....+.+|+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH------VIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce------eccCCcCCHHHHHHHhcCCCCCEEE
Confidence 4678999999996 65655555554457999999988877775432111 11110000000 00124699998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~-----~---~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG-----G---PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC-----C---HHHHHHHHHhcccCCEEEEEcc
Confidence 6432 1 1356667889999999887653
No 468
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.39 E-value=14 Score=41.50 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+||=.|||. |..+..+++. |...|+++|.++.-++.|++..... .+..-..+..+.... .+.+|+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~---vi~~~~~~~~~~~~~--~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK---LVNPQNDDLDHYKAE--KGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE---EecCCcccHHHHhcc--CCCCCEEEECC
Confidence 577899888742 2233333333 4546999999999998887643221 000001111111111 13589887542
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. . ...+..+.++|++||.+++..
T Consensus 244 G-----~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-----H---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 2 1 135677888999999998875
No 469
>KOG2298|consensus
Probab=70.94 E-value=2.2 Score=48.99 Aligned_cols=105 Identities=23% Similarity=0.218 Sum_probs=59.2
Q ss_pred CceeeEe---cCHHH--HHHHHHccCCC---cEEEEeeceecCCCCC---CCCcceecccccccCCC--------HHHHH
Q psy8372 395 NKFYSLV---QSPQQ--LKQLLMVGSVD---RYFQIARCYRDESTRP---DRQPEFTQLDIELSFTT--------RDDVM 455 (883)
Q Consensus 395 ~~~~~L~---~Spql--~kq~l~~~~~~---rvf~I~~~FR~E~~~~---~r~~EFt~le~e~~~~~--------~~dvm 455 (883)
+.+.||+ .-.|+ +|+++-..+-. -.=|||++||||=+.. -|-.||||.|+|- |.| +.+|-
T Consensus 180 ~~kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEH-FvdP~~K~h~kF~~V~ 258 (599)
T KOG2298|consen 180 GLKGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEH-FVDPLLKSHPKFSLVA 258 (599)
T ss_pred CcccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhc-cCCCCCCCChhhhhhh
Confidence 4456776 12233 56654322211 2348999999996543 3348999999987 665 44554
Q ss_pred HHHHHHHHHHhccCCCCceeeehHHHHHH---------------------hCCCCCCccccchhhh
Q psy8372 456 RLIEELLCYCLNIPTRTFSRISYNDAISL---------------------YGSDKPDLRYDCKIMI 500 (883)
Q Consensus 456 ~~~E~li~~i~~~~~~~f~rity~ea~~~---------------------yg~~~~d~r~~~~~~~ 500 (883)
++--.|+..-.+.-..+-.+++..||+.+ .|.|+.-+||...+.+
T Consensus 259 ~~~l~l~~~~~q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~n 324 (599)
T KOG2298|consen 259 AEKLRLFPRDKQLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMAN 324 (599)
T ss_pred hhhhhhcchhhhhccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhh
Confidence 44333333222211223344555555443 5788888888765544
No 470
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.87 E-value=9.9 Score=35.23 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEcccccccC
Q psy8372 143 AGIGRISKYLLAK---HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 143 CGtG~~~~~l~~~---g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~~vL~hl~ 217 (883)
||.|.++..++.. +...|+.+|.++..++.+++.. ..++.+|..+.... ..-+..|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------VEVIYGDATDPEVLERAGIEKADAVVILTD----- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------SEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------cccccccchhhhHHhhcCccccCEEEEccC-----
Confidence 5666777666543 3336999999999988887654 25788887764321 00146787776432
Q ss_pred hHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 218 DEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 218 ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.....+....+-+.|...++...
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3334455666677778888887776
No 471
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.43 E-value=7.1 Score=44.79 Aligned_cols=63 Identities=5% Similarity=-0.059 Sum_probs=52.7
Q ss_pred CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 182 DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 182 ~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
...++.+..++.+.....+++++|.++....+.++++++..+.++++.+.++|||++++-...
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 355677888877765433357999999999999999999999999999999999999998754
No 472
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=69.53 E-value=3.4 Score=44.12 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=43.6
Q ss_pred ceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCC-CCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 776 GLHYDLVLNGNEIGGGSIRIHSSELQESILHFLN-IETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 776 ~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~-~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+..++.-+||+||. |-.-|++.| ++. -|..+=+.-|||||.|.|-|.+||-|..-
T Consensus 124 GlGWEVWldGMEIT-----------QFTYFQQvGGi~~-------------~pv~~EITYGLERiaMylQ~vd~v~dl~w 179 (293)
T TIGR00388 124 GLGWEVWLDGMEVT-----------QFTYFQQVGGLEC-------------KPVSVEITYGLERLAMYIQGVENVYDLEW 179 (293)
T ss_pred ccccEEEECCeeee-----------eeeeeeeeCCeec-------------cccceeeehhHHHHHHHHhCCCeeeeeee
Confidence 47899999999997 444555543 432 36667899999999999999999998764
Q ss_pred C
Q psy8372 855 F 855 (883)
Q Consensus 855 F 855 (883)
=
T Consensus 180 ~ 180 (293)
T TIGR00388 180 S 180 (293)
T ss_pred c
Confidence 3
No 473
>PRK11524 putative methyltransferase; Provisional
Probab=68.88 E-value=4.6 Score=44.42 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=37.1
Q ss_pred cEEEccCCCCCCCcCCCCccEEEEcccccc----------cCh----HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 186 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMF----------ILD----EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 186 ~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h----------l~d----ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++++|+.+....-.+++||+|++..-..- ... +-+..++.++.++|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 567777766432222368999999643210 000 113578999999999999999864
No 474
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=65.55 E-value=21 Score=43.11 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C-C--C-C--ccceeccCCCCceeeEecCH--HHHHHHHHc-cCC--Cc
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT-P-G--G-A--REFVVPTHEPNKFYSLVQSP--QQLKQLLMV-GSV--DR 418 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~-~--g-a--~~f~v~~~~~~~~~~L~~Sp--ql~kq~l~~-~~~--~r 418 (883)
...+.+.+|++| -..||.|+-|-.+++.. . . + . ....+...-....-+|++|- .+.+-+..- .+. -|
T Consensus 364 ~~~~~~~ir~~L-~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~ 442 (551)
T TIGR00471 364 LNKVSDIIREIM-VGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQK 442 (551)
T ss_pred HHHHHHHHHHHH-HhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCee
Confidence 456677889999 58999999999997641 1 0 0 0 00111111112223455553 333222110 111 18
Q ss_pred EEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHHH
Q psy8372 419 YFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 419 vf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~i 465 (883)
+||||++|...+.+..+..++.++-+-+++ .|+.++...+|.++..+
T Consensus 443 lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 443 IFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred EEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999996532211233556777666654 37999999999988644
No 475
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.47 E-value=19 Score=38.92 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+++...|+|+-.|.++-.+.+++-. |++||-. .|.+... ....++-...|-..+.|.. ...|-.+|.+|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~-V~aVDng-~ma~sL~------dtg~v~h~r~DGfk~~P~r--~~idWmVCDmV 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMR-VYAVDNG-PMAQSLM------DTGQVTHLREDGFKFRPTR--SNIDWMVCDMV 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceE-EEEeccc-hhhhhhh------cccceeeeeccCcccccCC--CCCceEEeehh
Confidence 57899999999999999888888765 9999954 3322221 2234556677777776633 67899999876
Q ss_pred ccccChHHHHHHHHHHHHHhccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG 235 (883)
+.+...-+.+..+|..|
T Consensus 280 ------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 ------EKPARVAALIAKWLVNG 296 (358)
T ss_pred ------cCcHHHHHHHHHHHHcc
Confidence 55677777788888754
No 476
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=65.04 E-value=32 Score=38.66 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQ---SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~---S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+||=+|||. |.++..+++.....|++++. ++.-++.+++..... +.....+..+ .. ..+.+|+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~----v~~~~~~~~~-~~--~~~~~d~vi 243 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY----VNSSKTPVAE-VK--LVGEFDLII 243 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE----ecCCccchhh-hh--hcCCCCEEE
Confidence 3577999998853 33444444443236999986 677777766532211 1000111111 00 124689887
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
-... . ...+..+.++|++||.+++...
T Consensus 244 d~~g-----~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 244 EATG-----V---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ECcC-----C---HHHHHHHHHHccCCcEEEEEec
Confidence 6432 1 1367788899999999887653
No 477
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.83 E-value=18 Score=34.03 Aligned_cols=88 Identities=19% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC----CCcCCCCccEEEEcccccccChH
Q psy8372 144 GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLNIKYDVIWIQWVLMFILDE 219 (883)
Q Consensus 144 GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~FDlVvs~~vL~hl~de 219 (883)
|.|..+..+++....+|+++|.++.-++.+++..... ++...-.++. .......+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADH------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESE------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccc------cccccccccccccccccccccceEEEEecC-------
Confidence 4577777777664478999999999999988754321 2222211110 0010137999876432
Q ss_pred HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 220 DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 220 d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
-...++.+..+|+|+|.+++.....
T Consensus 68 -~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 -SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1257888999999999999987554
No 478
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=64.04 E-value=44 Score=36.35 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCC
Q psy8372 121 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQ 193 (883)
Q Consensus 121 lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g------~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~ 193 (883)
++..+..... ..++..++|+|||.|.++.++.... ...++.||-...- ..+.++..... ...+.-+.+|+.
T Consensus 6 li~~l~~~~l-l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R-~K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 6 LIGNLEQRGL-LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR-HKADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHcCC-CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc-ccchhhhhccCCCCceEEEEEEee
Confidence 4444433222 2566799999999999998776643 2268899974321 23333333322 134567888888
Q ss_pred CCCCC
Q psy8372 194 DFKPE 198 (883)
Q Consensus 194 ~~~~~ 198 (883)
++...
T Consensus 84 dl~l~ 88 (259)
T PF05206_consen 84 DLDLS 88 (259)
T ss_pred ccchh
Confidence 87653
No 479
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=64.01 E-value=11 Score=41.85 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCChHHHHHHHhC-------C--------------CeEEEEeCCH--HHHHHHHHHHhhc-----------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH-------F--------------DKIDLLEQSS--KFIEQAKEEILKD----------- 180 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g-------~--------------~~V~gvD~S~--~~le~A~~~~~~~----------- 180 (883)
..+||-||.|.|.-...++... . -.++.||+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999987554444322 0 0689999875 4455444433222
Q ss_pred ------cCCCccEEEccCCCCCCCcC-----CCCccEEEEccccccc---ChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 181 ------CDKLDKCYNVGIQDFKPEDL-----NIKYDVIWIQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 181 ------~~~~~~~~~~d~~~~~~~~~-----~~~FDlVvs~~vL~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
..-.+.|.+.|+........ ....|+|....++.-+ ....-.++|.++-..++||-.|+|.+...
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 11124788888887654321 1246777766655433 11346789999999999999999998543
No 480
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.98 E-value=49 Score=36.86 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+||=.|||. |..+..+++.....|++++.++.-++.|++..... .+ +..+. . .+.+|+++-.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------vi--~~~~~--~--~~~~d~~i~~ 230 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------AG--GAYDT--P--PEPLDAAILF 230 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------ec--ccccc--C--cccceEEEEC
Confidence 35678999999753 22333344433335899999988888887754321 11 11111 1 1357876543
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
... ...+....++|++||++++...
T Consensus 231 ~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 221 1367788899999999988653
No 481
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=63.50 E-value=17 Score=43.33 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCChH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC---------------CC-
Q psy8372 134 GKTRVLDVGAGIGRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD---------------FK- 196 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~-~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~---------------~~- 196 (883)
++.+||=+|||.=.. +..++......|+++|.++.-++.++.... +++..+..+ +.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa-------~~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA-------EFLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------eEEeccccccccccccceeecCHHHHH
Confidence 568999999987643 333333333359999999998888876321 222222211 00
Q ss_pred -----CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 197 -----PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 197 -----~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
..+.-..+|+|+....+.--+. +.-+.+++.+.+|||+.++-
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~a--P~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPA--PKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCC--CeeehHHHHhhCCCCCEEEE
Confidence 0000146899988765544322 44567888999999988553
No 482
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=63.22 E-value=4.5 Score=45.24 Aligned_cols=34 Identities=35% Similarity=0.805 Sum_probs=27.0
Q ss_pred hcCCC-CCcceeccHHHHHHHHhCCCCccccccCCC
Q psy8372 823 KYGCP-PHGGIALGIDRLMSILCGTQSIRDVIAFPK 857 (883)
Q Consensus 823 ~~G~p-PhgG~glGldRlvm~l~~~~sIRdvi~FPk 857 (883)
+||.| |---+|+|+|||.|+|-|.++||.. .+|.
T Consensus 318 eY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 318 EYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 46643 5668999999999999999999975 3443
No 483
>KOG0556|consensus
Probab=63.10 E-value=6.1 Score=44.69 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=41.4
Q ss_pred ccccccCCcCCCCEEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 11 HTCGALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 11 ~~~~~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
....+|+.+..|++|++.|.|+..|. .+|+.||+..-.+||++...+
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~tVQ~~~~~~~ 120 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGSTVQCLVAVNE 120 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccceEEEEEEeccCceEEEEEEcCC
Confidence 35678999999999999999999998 689999999999999985544
No 484
>PRK07080 hypothetical protein; Validated
Probab=62.77 E-value=6.3 Score=43.64 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=36.9
Q ss_pred cEEEE-eeceecCCCC-CCCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQI-ARCYRDESTR-PDRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I-~~~FR~E~~~-~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
++|.+ |.|||.|++. ..|.-||+|-|+-..+ +-+++.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHH
Confidence 66655 7899999874 5677999999998866 7778888877777654
No 485
>KOG0554|consensus
Probab=62.07 E-value=4.5 Score=45.67 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=35.7
Q ss_pred ccCCcCCCCEEEEEEeeeeech---hhhhhhccccCc--EEEEecCC
Q psy8372 15 ALRLSDVDKTVTLCGWLQNQRV---DMFALLRDAYGQ--VQVIVPNH 56 (883)
Q Consensus 15 ~~~~~~~g~~v~l~gWv~~~R~---~~f~~lRD~~G~--~qvv~~~~ 56 (883)
+......|+++.+.|||.+.|. ..|+++-|++-. .|||++++
T Consensus 13 ~~~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~ 59 (446)
T KOG0554|consen 13 ILGHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE 59 (446)
T ss_pred cccCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH
Confidence 3556788999999999999999 789999888766 79999873
No 486
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=61.84 E-value=32 Score=36.62 Aligned_cols=55 Identities=27% Similarity=0.493 Sum_probs=42.7
Q ss_pred ceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC-CCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccccc
Q psy8372 776 GLHYDLVLNGNEIGGGSIRIHSSELQESILHFL-NIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIA 854 (883)
Q Consensus 776 ~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~-~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~ 854 (883)
+..++.-+||+||. |-.-|++. |++. -|-.|-+--|||||.|.+-|.+||-|+.-
T Consensus 128 GlGWEVWldGMEvT-----------QFTYFQQvGGiec-------------~pV~~EITYGlERlAmYiQ~vdnVydl~W 183 (298)
T COG0752 128 GLGWEVWLDGMEVT-----------QFTYFQQVGGLEC-------------KPVSGEITYGLERLAMYIQGVDNVYDLEW 183 (298)
T ss_pred ccceeEEEcCeeee-----------eeehhhhhCCeec-------------cceeeeeehhHHHHHHHHhCccceeEEee
Confidence 46899999999997 44455554 3432 35567788999999999999999999864
No 487
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=61.72 E-value=33 Score=38.46 Aligned_cols=92 Identities=15% Similarity=0.076 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCh-HHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGR-ISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~-~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+||=+|||.=. ++..+++. +..+|+++|.++.-++.|++ +... ...+ ++. .. ..+|+|+-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-------~~~~--~~~-~~--~g~d~viD 228 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-------YLID--DIP-ED--LAVDHAFE 228 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-------eehh--hhh-hc--cCCcEEEE
Confidence 467899999985422 33334443 34479999999888888764 1110 1111 111 11 24888875
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.-- ... ....+..+.++|++||++++..
T Consensus 229 ~~G-~~~----~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 229 CVG-GRG----SQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC-CCc----cHHHHHHHHHhCcCCcEEEEEe
Confidence 321 100 1246788889999999998765
No 488
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=59.62 E-value=34 Score=37.93 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc---CCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~FDlVv 208 (883)
++.+||-.|||. |..+..+++. |...+++++.++...+.+++.... .++... ....... .+.+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~------~vi~~~~~~~~~~~~~--~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD------ETVNLARDPLAAYAAD--KGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC------EEEcCCchhhhhhhcc--CCCccEEE
Confidence 678899988765 5555555554 443689999998888866553211 111111 1111111 13589998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..... ...+..+.+.|+++|+++...
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 64321 135677889999999988754
No 489
>PTZ00357 methyltransferase; Provisional
Probab=59.37 E-value=31 Score=42.05 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChHHHHHHHh----CCC-eEEEEeCCHHHHHHHHHHHhh---cc------CCCccEEEccCCCCCCCc--
Q psy8372 136 TRVLDVGAGIGRISKYLLAK----HFD-KIDLLEQSSKFIEQAKEEILK---DC------DKLDKCYNVGIQDFKPED-- 199 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~----g~~-~V~gvD~S~~~le~A~~~~~~---~~------~~~~~~~~~d~~~~~~~~-- 199 (883)
..|+=+|+|-|-+....+.. +.. +|++|+-++..+.....+... .. ...++.+..|+..+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999886655543 334 799999996654444443222 11 234688999998885431
Q ss_pred -------CCCCccEEEEcccccccCh-HHHHHHHHHHHHHhcc----CcEE
Q psy8372 200 -------LNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNK----NGII 238 (883)
Q Consensus 200 -------~~~~FDlVvs~~vL~hl~d-ed~~~~l~~~~r~LKP----GG~l 238 (883)
.-+++|+||+-. |--+.| |--.+.|..+.+.||+ +|++
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhccccccc
Confidence 013699998743 334433 3335788888888887 7763
No 490
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=58.44 E-value=64 Score=35.48 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+||-.||| .|..+..++......|++++.++...+.+++.... ..+........... .+.+|+|+...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~-~~~~d~vi~~~ 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD------EVVDSGAELDEQAA-AGGADVILVTV 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc------EEeccCCcchHHhc-cCCCCEEEECC
Confidence 567789999986 56555555555333699999999888887543211 11111100100001 13589887632
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. -...+..+.+.|+++|.++...
T Consensus 234 ~--------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 V--------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred C--------cHHHHHHHHHhcccCCEEEEEC
Confidence 1 1135677789999999888765
No 491
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.29 E-value=50 Score=36.70 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC---CCccEEEccCCCCCC--CcC-----CCC
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGIQDFKP--EDL-----NIK 203 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~---~~~~~~~~d~~~~~~--~~~-----~~~ 203 (883)
...|+-+|||-=.=+-.+ ..+.. .|.-+|. |+.++.=++.+.+... ....++..|+.+-.. .-. .+.
T Consensus 93 ~~qvViLgaGLDTRayRl-~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL-DWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeec-CCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 468999999865433222 11222 4556664 5666665555555432 245778888873221 110 133
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc----c-----c-----c-CCcccccccchhhhh
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN----E-----Y-----D-DEDSSVVRSLPQFCL 268 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~----~-----~-----~-~~~~~~~~s~~~~~~ 268 (883)
-=++++-.++.+++.+...++|..+...+.||-.++........... . . + .+-........++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 45788999999999999999999999999988888877631111100 0 0 0 011112234568889
Q ss_pred hhhhccccccccc
Q psy8372 269 LFSKANLKCVKSE 281 (883)
Q Consensus 269 l~~~aGf~vv~~~ 281 (883)
++.+.|+......
T Consensus 251 ~l~~~g~~~~~~~ 263 (297)
T COG3315 251 WLAERGWRSTLNR 263 (297)
T ss_pred HHHhcCEEEEecC
Confidence 9999999887654
No 492
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=56.25 E-value=5 Score=46.88 Aligned_cols=50 Identities=34% Similarity=0.494 Sum_probs=41.3
Q ss_pred cccccccccCCcCCCC----------EEEEEEeeeeech---hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALRLSDVDK----------TVTLCGWLQNQRV---DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~~~~~g~----------~v~l~gWv~~~R~---~~f~~lRD~~G~~qvv~~~~~ 57 (883)
.|+|++.++...+..+ +|.+||-+..+|. ..|+++.|.+|-+|+.+.++.
T Consensus 37 ~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~ 99 (502)
T COG1190 37 ERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDE 99 (502)
T ss_pred cccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCceEEEEEeccc
Confidence 3777777776655432 3999999999998 589999999999999998876
No 493
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=56.00 E-value=80 Score=33.69 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=52.8
Q ss_pred cCCCeEEEcCCeeccCCCC------CC-cc--ceeccCCCCceeeEecCHHHHHHHHHc-cCC---CcEEEEeecee-cC
Q psy8372 364 THRDFVEVETPTLFKRTPG------GA-RE--FVVPTHEPNKFYSLVQSPQQLKQLLMV-GSV---DRYFQIARCYR-DE 429 (883)
Q Consensus 364 ~~~gF~EV~TP~l~~~~~~------ga-~~--f~v~~~~~~~~~~L~~Spql~kq~l~~-~~~---~rvf~I~~~FR-~E 429 (883)
.+.+.+.|..|.++....| |- ++ |.+... .+..+-.-+|-.-+|.+++. .++ +.+|+=+++.| .|
T Consensus 23 ~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~-~~~~~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~d 101 (244)
T PF03590_consen 23 KALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDI-PDETAEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDD 101 (244)
T ss_dssp HHC-EEE----SEEETTSS-S--TTST----EE--TTS-TT--EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-
T ss_pred HHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCC-CCceeeeehhHHHHHHHHHHHcCCCCCceEeecCceeecch
Confidence 3458999999999875322 32 22 433321 24556677887778887654 234 58999999999 77
Q ss_pred C-CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhcc
Q psy8372 430 S-TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNI 468 (883)
Q Consensus 430 ~-~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~ 468 (883)
+ .++.|.-=.-|-|||.....-+--++.+.+.++.|+++
T Consensus 102 e~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~a 141 (244)
T PF03590_consen 102 EELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKA 141 (244)
T ss_dssp SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHH
T ss_pred hccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHH
Confidence 5 68888888999999999876544455555555555444
No 494
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.56 E-value=1.1e+02 Score=29.03 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCCCh-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
..++|.+||.|-=. .+..+.+.|+. |+++|+.+. ++. .-++++.-|+.+....- =...|+|+|.-.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a~----~g~~~v~DDitnP~~~i-Y~~A~lIYSiRp 79 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TAP----EGLRFVVDDITNPNISI-YEGADLIYSIRP 79 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cCc----ccceEEEccCCCccHHH-hhCccceeecCC
Confidence 34599999998754 46666667777 999999876 111 22367888887644321 135788877542
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
..++...+-.+++.+ |..++|.....
T Consensus 80 -----ppEl~~~ildva~aV--ga~l~I~pL~G 105 (129)
T COG1255 80 -----PPELQSAILDVAKAV--GAPLYIKPLTG 105 (129)
T ss_pred -----CHHHHHHHHHHHHhh--CCCEEEEecCC
Confidence 244666666666655 44666665443
No 495
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=54.14 E-value=76 Score=37.89 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHh---CC--CeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEccCCCCCCCcCCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK---HF--DKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~---g~--~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
++..|.|..||+|.+....... +. ..++|.+....+...|+.+..-... ........|...-+.......||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4578999999999988654321 11 2689999999999999987543211 111111222211110111235787
Q ss_pred EEEcccc--------------------ccc-Ch--HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 207 IWIQWVL--------------------MFI-LD--EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 207 Vvs~~vL--------------------~hl-~d--ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+++.-+ .|+ +. +.=..++..+...|++||...+.-+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 7764421 111 11 1234678888899999998766653
No 496
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=53.10 E-value=39 Score=38.25 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|+=+|||+ |.++..+++. |...|+.+|.++.-++.|++........+..-- ..............+|+|+=..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEEEECC
Confidence 344999999997 4454444443 556899999999999999985543210000000 0000000000012699998543
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
- ....+..+.++++|||.+.+.-...
T Consensus 247 G--------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 G--------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred C--------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3 1247888999999999999887543
No 497
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=51.41 E-value=16 Score=33.48 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.9
Q ss_pred cccceEEEEeeeeeecccCCCCCcccc
Q psy8372 295 GLLSKEVIASNITVLNKADVNIPFHIK 321 (883)
Q Consensus 295 ~~~~iEI~~e~i~vl~k~~~~lP~~~~ 321 (883)
..+++|+.++++++++++..++|+.+.
T Consensus 75 ~~~~~El~~~~i~il~~~~~~~P~~~~ 101 (102)
T cd04320 75 TQQDVELHIEKIYVVSEAAEPLPFQLE 101 (102)
T ss_pred CcCcEEEEEEEEEEEecCCCCCCCCCC
Confidence 346899999999999999778998754
No 498
>KOG3924|consensus
Probab=50.30 E-value=39 Score=38.61 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhh------c-c--CC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK------D-C--DK 183 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~------~-~--~~ 183 (883)
+......+.+++-. .++....|+|.|.|.+...++..+. ..-+|+++....-+.|..+... . + .+
T Consensus 177 ~~~ql~si~dEl~~-----g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~ 251 (419)
T KOG3924|consen 177 QLEQLRSIVDELKL-----GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPN 251 (419)
T ss_pred hHHHHHHHHHHhcc-----CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcC
Confidence 44555556666532 4667889999999999876665533 3566887776555555443221 1 1 22
Q ss_pred CccEEEccCCCCCC-CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 184 LDKCYNVGIQDFKP-EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 184 ~~~~~~~d~~~~~~-~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
..+.+..++.+... .......++|+++++... +++..-+.++..-+++|-+++-..+.
T Consensus 252 ~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 252 KIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred ceeecccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccc
Confidence 23445555443221 111246788998887542 33555556888888998888766543
No 499
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.84 E-value=36 Score=38.30 Aligned_cols=96 Identities=16% Similarity=0.015 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC----CCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF----KPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~FDl 206 (883)
.++.+||=.|||. |..+..+++. |...|+++|.++.-++.+++.... .++...-.++ ........+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~------~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT------HTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 5678999998743 3333334443 444699999999988888653221 1111111110 00000135898
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+-... . ...+..+.++|++||++++..
T Consensus 249 vid~~g-----~---~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVG-----R---PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCC-----C---HHHHHHHHHHhccCCEEEEEC
Confidence 875321 1 135666788999999998765
No 500
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=49.13 E-value=34 Score=38.81 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~FDlV 207 (883)
.++.+||=.|+|. |..+..+++. |...|+++|.++.-++.|++..... ++...-.++. ....++.+|+|
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~------~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA------TVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce------EeCCCchhHHHHHHHHhCCCCCEE
Confidence 4677888888753 2233333433 4546999999999888886543211 1111111100 00001358888
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+-... . ...+..+.++|+++|.+++..
T Consensus 264 id~~G-----~---~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAG-----S---VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EECCC-----C---hHHHHHHHHHHhcCCEEEEEc
Confidence 75321 1 135667788999999988765
Done!