Query psy8372
Match_columns 883
No_of_seqs 670 out of 4925
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:59:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ah6_A Aspartate--tRNA ligase, 100.0 2E-125 7E-130 1103.7 51.5 486 296-883 97-593 (617)
2 1l0w_A Aspartyl-tRNA synthetas 100.0 4E-111 1E-115 986.9 46.2 472 297-883 88-576 (580)
3 1c0a_A Aspartyl tRNA synthetas 100.0 3E-110 9E-115 983.6 47.9 480 296-883 89-582 (585)
4 1e1o_A Lysyl-tRNA synthetase, 100.0 4.2E-80 1.4E-84 713.8 33.8 343 298-860 134-502 (504)
5 3a74_A Lysyl-tRNA synthetase; 100.0 1.5E-78 5.1E-83 699.9 32.9 342 298-860 125-492 (493)
6 3nem_A Aspartyl-tRNA synthetas 100.0 1.7E-77 5.7E-82 682.0 39.1 326 298-860 87-434 (438)
7 4ex5_A Lysine--tRNA ligase; st 100.0 3.6E-77 1.2E-81 688.4 31.1 348 298-861 155-528 (529)
8 1n9w_A Aspartyl-tRNA synthetas 100.0 2.5E-77 8.6E-82 679.0 28.6 325 297-861 73-419 (422)
9 1eov_A ASPRS, aspartyl-tRNA sy 100.0 2.3E-75 7.8E-80 674.0 39.2 352 297-861 115-484 (487)
10 1wyd_A Hypothetical aspartyl-t 100.0 1.2E-75 4E-80 666.6 34.4 322 298-861 84-426 (429)
11 3i7f_A Aspartyl-tRNA synthetas 100.0 1.5E-74 5.1E-79 667.1 35.5 327 297-860 138-544 (548)
12 1x54_A Asparaginyl-tRNA synthe 100.0 5.8E-74 2E-78 654.2 31.3 318 298-862 87-432 (434)
13 3bju_A Lysyl-tRNA synthetase; 100.0 2.8E-72 9.6E-77 651.6 33.6 350 296-861 125-508 (521)
14 2xgt_A Asparaginyl-tRNA synthe 100.0 8.4E-71 2.9E-75 628.9 27.1 326 297-862 82-433 (435)
15 3m4p_A Ehasnrs, asparaginyl-tR 100.0 5.7E-70 2E-74 623.0 23.1 322 297-861 107-453 (456)
16 3a5y_A GENX, putative lysyl-tR 100.0 5.2E-67 1.8E-71 579.3 29.0 300 340-859 29-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 3.9E-58 1.3E-62 500.1 24.8 266 333-861 1-290 (294)
18 2ex4_A Adrenal gland protein A 99.9 4.4E-21 1.5E-25 202.0 16.5 208 79-289 24-231 (241)
19 1xtp_A LMAJ004091AAA; SGPP, st 99.8 3.7E-20 1.3E-24 195.6 16.1 197 84-289 48-244 (254)
20 3qtc_A Pyrrolysyl-tRNA synthet 99.8 1.2E-20 4.3E-25 205.0 4.5 177 282-465 10-206 (290)
21 12as_A Asparagine synthetase; 99.7 8E-17 2.7E-21 170.7 23.0 123 346-469 3-144 (330)
22 3h2b_A SAM-dependent methyltra 99.7 1.6E-17 5.4E-22 169.6 15.7 144 135-286 42-185 (203)
23 4gek_A TRNA (CMO5U34)-methyltr 99.7 7.4E-17 2.5E-21 172.7 14.6 144 133-280 69-242 (261)
24 3hnr_A Probable methyltransfer 99.7 7.4E-17 2.5E-21 166.6 14.1 153 118-283 34-201 (220)
25 3dtn_A Putative methyltransfer 99.7 9.4E-17 3.2E-21 167.6 14.4 147 132-283 42-214 (234)
26 3e23_A Uncharacterized protein 99.7 1.4E-16 4.8E-21 163.7 14.9 140 133-283 42-182 (211)
27 1pjz_A Thiopurine S-methyltran 99.7 1.7E-16 5.9E-21 163.1 14.2 145 133-284 21-177 (203)
28 2o57_A Putative sarcosine dime 99.7 2.1E-16 7.3E-21 171.2 15.5 146 132-281 80-232 (297)
29 3bus_A REBM, methyltransferase 99.7 4.9E-16 1.7E-20 166.0 16.9 145 132-280 59-213 (273)
30 1kpg_A CFA synthase;, cyclopro 99.7 5.6E-16 1.9E-20 167.1 17.2 157 119-281 50-226 (287)
31 3l8d_A Methyltransferase; stru 99.7 3E-16 1E-20 164.3 14.3 141 133-281 52-198 (242)
32 1vl5_A Unknown conserved prote 99.7 3.1E-16 1.1E-20 166.6 14.1 143 133-280 36-187 (260)
33 3g5l_A Putative S-adenosylmeth 99.7 4.8E-16 1.6E-20 164.3 15.3 145 133-284 43-217 (253)
34 2p7i_A Hypothetical protein; p 99.7 1.4E-16 4.7E-21 166.8 10.6 138 134-281 42-197 (250)
35 1nkv_A Hypothetical protein YJ 99.7 7.7E-16 2.6E-20 162.7 16.4 143 133-280 35-184 (256)
36 3kkz_A Uncharacterized protein 99.7 6.4E-16 2.2E-20 164.9 15.5 144 132-280 44-193 (267)
37 3f4k_A Putative methyltransfer 99.7 6.8E-16 2.3E-20 163.3 15.4 144 132-280 44-193 (257)
38 3ou2_A SAM-dependent methyltra 99.7 5.7E-16 2E-20 159.2 14.0 141 133-281 45-203 (218)
39 3jwg_A HEN1, methyltransferase 99.7 1.4E-15 4.7E-20 157.3 16.8 152 133-286 28-195 (219)
40 3dh0_A SAM dependent methyltra 99.7 1.1E-15 3.9E-20 157.6 16.1 143 133-282 36-180 (219)
41 3jwh_A HEN1; methyltransferase 99.7 1.4E-15 4.8E-20 157.1 16.8 152 133-286 28-195 (217)
42 3hem_A Cyclopropane-fatty-acyl 99.7 9.9E-16 3.4E-20 166.7 16.1 144 132-280 70-240 (302)
43 4htf_A S-adenosylmethionine-de 99.6 6.5E-16 2.2E-20 166.5 14.1 145 134-282 68-231 (285)
44 3dli_A Methyltransferase; PSI- 99.6 5.1E-16 1.7E-20 163.1 12.8 139 133-280 40-181 (240)
45 3ujc_A Phosphoethanolamine N-m 99.6 7.3E-16 2.5E-20 163.3 13.9 146 132-281 53-204 (266)
46 1xxl_A YCGJ protein; structura 99.6 1.1E-15 3.8E-20 160.6 15.1 143 133-280 20-171 (239)
47 2fk8_A Methoxy mycolic acid sy 99.6 2.4E-15 8.1E-20 164.8 17.6 156 119-281 76-252 (318)
48 2a14_A Indolethylamine N-methy 99.6 3.5E-16 1.2E-20 167.2 10.7 149 133-282 54-237 (263)
49 3mgg_A Methyltransferase; NYSG 99.6 1.1E-15 3.8E-20 163.6 14.3 156 122-281 25-196 (276)
50 3lcc_A Putative methyl chlorid 99.6 1.2E-15 4.1E-20 159.6 11.6 140 135-283 67-207 (235)
51 2gb4_A Thiopurine S-methyltran 99.6 2E-15 6.9E-20 160.7 13.4 142 133-281 67-225 (252)
52 3dlc_A Putative S-adenosyl-L-m 99.6 8.2E-16 2.8E-20 157.7 9.6 141 137-281 46-201 (219)
53 3pfg_A N-methyltransferase; N, 99.6 1.2E-15 4.2E-20 162.3 10.7 102 133-243 49-152 (263)
54 2kw5_A SLR1183 protein; struct 99.6 5.4E-15 1.9E-19 150.6 14.1 142 133-283 29-171 (202)
55 3vc1_A Geranyl diphosphate 2-C 99.6 5.7E-15 1.9E-19 161.6 15.2 146 132-282 115-268 (312)
56 3sm3_A SAM-dependent methyltra 99.6 4E-15 1.4E-19 154.5 12.7 147 133-282 29-206 (235)
57 3ccf_A Cyclopropane-fatty-acyl 99.6 3.9E-15 1.3E-19 160.0 13.0 137 133-280 56-207 (279)
58 2xvm_A Tellurite resistance pr 99.6 1.2E-14 4.1E-19 147.1 15.6 141 134-282 32-172 (199)
59 2p8j_A S-adenosylmethionine-de 99.6 1.1E-14 3.9E-19 148.8 15.5 145 133-280 22-180 (209)
60 3ege_A Putative methyltransfer 99.6 1.9E-15 6.7E-20 161.0 10.1 137 133-282 33-177 (261)
61 2p35_A Trans-aconitate 2-methy 99.6 9.7E-15 3.3E-19 154.4 15.4 135 133-277 32-184 (259)
62 3g2m_A PCZA361.24; SAM-depende 99.6 5.1E-15 1.7E-19 160.8 13.4 157 116-282 70-273 (299)
63 1y8c_A S-adenosylmethionine-de 99.6 4.4E-15 1.5E-19 155.3 12.1 144 134-282 37-224 (246)
64 2yqz_A Hypothetical protein TT 99.6 4.6E-15 1.6E-19 157.1 12.0 140 133-278 38-191 (263)
65 3bkw_A MLL3908 protein, S-aden 99.6 7.5E-15 2.5E-19 153.6 12.9 145 133-284 42-215 (243)
66 3dsq_A Pyrrolysyl-tRNA synthet 99.6 2.3E-14 8E-19 155.0 16.7 96 351-449 73-182 (288)
67 1ri5_A MRNA capping enzyme; me 99.6 9.9E-15 3.4E-19 157.4 13.8 149 133-282 63-249 (298)
68 3e8s_A Putative SAM dependent 99.6 1.5E-14 5.1E-19 149.1 14.3 138 134-282 52-208 (227)
69 2g72_A Phenylethanolamine N-me 99.6 5.4E-15 1.8E-19 159.9 11.1 148 134-282 71-255 (289)
70 2gs9_A Hypothetical protein TT 99.6 2.5E-14 8.7E-19 146.7 15.5 102 134-247 36-137 (211)
71 3gu3_A Methyltransferase; alph 99.6 8.4E-15 2.9E-19 158.1 12.1 145 132-282 20-189 (284)
72 1wzn_A SAM-dependent methyltra 99.6 1.6E-14 5.3E-19 152.4 13.9 107 133-244 40-147 (252)
73 2vdw_A Vaccinia virus capping 99.6 4E-15 1.4E-19 162.6 9.5 112 133-244 47-171 (302)
74 3dp7_A SAM-dependent methyltra 99.6 3.6E-14 1.2E-18 158.9 17.4 150 134-286 179-345 (363)
75 3bxo_A N,N-dimethyltransferase 99.6 1.1E-14 3.8E-19 151.8 11.7 104 133-245 39-144 (239)
76 3i9f_A Putative type 11 methyl 99.5 1.5E-14 5.2E-19 143.2 11.8 134 133-284 16-149 (170)
77 4fsd_A Arsenic methyltransfera 99.5 1.1E-14 3.6E-19 164.4 12.0 144 133-280 82-248 (383)
78 2aot_A HMT, histamine N-methyl 99.5 1.7E-14 5.8E-19 156.4 12.8 145 133-279 51-217 (292)
79 1ve3_A Hypothetical protein PH 99.5 7.4E-14 2.5E-18 144.4 16.7 107 134-244 38-144 (227)
80 3ggd_A SAM-dependent methyltra 99.5 2.2E-14 7.4E-19 150.8 12.7 144 133-282 55-218 (245)
81 2i62_A Nicotinamide N-methyltr 99.5 6E-15 2E-19 156.4 7.7 149 133-282 55-238 (265)
82 3orh_A Guanidinoacetate N-meth 99.5 3.8E-15 1.3E-19 156.8 6.0 144 133-280 59-207 (236)
83 1vlm_A SAM-dependent methyltra 99.5 2.3E-14 7.7E-19 148.4 11.5 135 135-285 48-190 (219)
84 3d2l_A SAM-dependent methyltra 99.5 4.4E-14 1.5E-18 147.7 13.5 105 133-243 32-138 (243)
85 3ocj_A Putative exported prote 99.5 2.5E-14 8.6E-19 156.0 12.0 147 133-282 117-290 (305)
86 3cgg_A SAM-dependent methyltra 99.5 1.1E-13 3.8E-18 138.9 15.9 130 133-283 45-175 (195)
87 3m70_A Tellurite resistance pr 99.5 8.1E-14 2.8E-18 150.1 15.3 139 134-281 120-258 (286)
88 3cc8_A Putative methyltransfer 99.5 4.8E-14 1.7E-18 145.6 12.8 141 133-283 31-185 (230)
89 4hg2_A Methyltransferase type 99.5 2.8E-14 9.7E-19 152.3 10.7 100 133-244 38-137 (257)
90 2r3s_A Uncharacterized protein 99.5 8.7E-14 3E-18 153.3 14.7 146 133-282 164-322 (335)
91 3g07_A 7SK snRNA methylphospha 99.5 3.9E-14 1.3E-18 153.8 11.2 147 134-280 46-266 (292)
92 3bkx_A SAM-dependent methyltra 99.5 1.7E-13 6E-18 146.3 15.7 148 133-282 42-218 (275)
93 3ofk_A Nodulation protein S; N 99.5 7.6E-14 2.6E-18 143.6 12.3 106 133-244 50-156 (216)
94 2pxx_A Uncharacterized protein 99.5 1.2E-13 4E-18 141.3 13.7 108 133-244 41-161 (215)
95 3i53_A O-methyltransferase; CO 99.5 1.4E-13 4.8E-18 151.9 14.0 145 133-282 168-320 (332)
96 3iv6_A Putative Zn-dependent a 99.5 4.2E-14 1.5E-18 150.9 9.4 103 133-243 44-149 (261)
97 3thr_A Glycine N-methyltransfe 99.5 6.1E-14 2.1E-18 151.4 10.1 108 134-244 57-177 (293)
98 3mcz_A O-methyltransferase; ad 99.5 1.9E-13 6.4E-18 152.0 14.3 144 135-280 180-336 (352)
99 1zx0_A Guanidinoacetate N-meth 99.5 4.3E-14 1.5E-18 148.2 8.1 140 133-277 59-204 (236)
100 4e2x_A TCAB9; kijanose, tetron 99.5 3.3E-14 1.1E-18 161.8 7.4 143 133-282 106-252 (416)
101 2qe6_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 145.6 14.2 141 134-279 77-238 (274)
102 3bgv_A MRNA CAP guanine-N7 met 99.5 2.1E-13 7.1E-18 149.2 12.4 113 133-245 33-158 (313)
103 3gwz_A MMCR; methyltransferase 99.4 7.5E-13 2.6E-17 148.5 16.6 145 133-282 201-355 (369)
104 3grz_A L11 mtase, ribosomal pr 99.4 3.1E-13 1.1E-17 138.2 12.1 126 133-282 59-184 (205)
105 3mti_A RRNA methylase; SAM-dep 99.4 4.2E-13 1.4E-17 134.8 12.3 110 133-244 21-137 (185)
106 1x19_A CRTF-related protein; m 99.4 9.7E-13 3.3E-17 146.8 16.3 145 133-282 189-347 (359)
107 3e05_A Precorrin-6Y C5,15-meth 99.4 1.2E-12 4.1E-17 133.8 15.7 122 133-276 39-161 (204)
108 1qzz_A RDMB, aclacinomycin-10- 99.4 4.4E-13 1.5E-17 150.1 12.5 145 133-282 181-338 (374)
109 3g5t_A Trans-aconitate 3-methy 99.4 5.9E-13 2E-17 144.5 13.1 108 133-243 35-150 (299)
110 3p9n_A Possible methyltransfer 99.4 3.5E-13 1.2E-17 136.2 10.2 112 133-245 43-156 (189)
111 4a6d_A Hydroxyindole O-methylt 99.4 1.2E-12 4.1E-17 146.0 15.2 145 133-282 178-333 (353)
112 2ip2_A Probable phenazine-spec 99.4 1E-12 3.4E-17 145.0 14.3 142 136-282 169-321 (334)
113 1tw3_A COMT, carminomycin 4-O- 99.4 1E-12 3.5E-17 146.5 13.4 145 133-282 182-338 (360)
114 2avn_A Ubiquinone/menaquinone 99.4 1.5E-12 5E-17 138.5 13.9 139 81-244 16-154 (260)
115 3htx_A HEN1; HEN1, small RNA m 99.4 2.8E-12 9.7E-17 152.8 17.5 149 134-285 721-900 (950)
116 3m33_A Uncharacterized protein 99.4 1.3E-12 4.3E-17 136.1 12.8 118 133-280 47-164 (226)
117 3evz_A Methyltransferase; NYSG 99.4 1.4E-12 4.7E-17 135.7 13.0 135 133-283 54-206 (230)
118 3reo_A (ISO)eugenol O-methyltr 99.4 1.4E-12 4.6E-17 146.4 13.6 139 132-282 201-354 (368)
119 3njr_A Precorrin-6Y methylase; 99.4 2.9E-12 9.9E-17 131.7 14.5 123 133-280 54-177 (204)
120 1yzh_A TRNA (guanine-N(7)-)-me 99.4 2.7E-12 9.2E-17 132.4 13.8 133 134-281 41-180 (214)
121 3p9c_A Caffeic acid O-methyltr 99.4 2.3E-12 7.7E-17 144.4 14.2 139 132-282 199-352 (364)
122 3hm2_A Precorrin-6Y C5,15-meth 99.4 2.2E-12 7.5E-17 128.1 12.1 124 133-279 24-149 (178)
123 3lst_A CALO1 methyltransferase 99.4 1.2E-12 4E-17 145.6 11.2 142 133-282 183-335 (348)
124 2zfu_A Nucleomethylin, cerebra 99.4 1.3E-12 4.3E-17 134.5 10.5 113 133-282 66-178 (215)
125 3mq2_A 16S rRNA methyltransfer 99.4 6.1E-13 2.1E-17 137.3 8.1 145 133-282 26-183 (218)
126 3p2e_A 16S rRNA methylase; met 99.4 7.8E-13 2.7E-17 138.3 8.7 149 133-282 23-184 (225)
127 2ift_A Putative methylase HI07 99.3 1.5E-12 5.1E-17 133.4 9.6 109 134-245 53-166 (201)
128 2fca_A TRNA (guanine-N(7)-)-me 99.3 4E-12 1.4E-16 131.5 12.5 131 134-279 38-175 (213)
129 2nxc_A L11 mtase, ribosomal pr 99.3 2.2E-12 7.7E-17 137.1 10.8 125 133-282 119-243 (254)
130 3eey_A Putative rRNA methylase 99.3 6E-12 2E-16 127.6 13.3 111 133-244 21-141 (197)
131 3giw_A Protein of unknown func 99.3 2E-12 6.9E-17 138.1 10.1 162 116-279 60-243 (277)
132 1dus_A MJ0882; hypothetical pr 99.3 8E-12 2.7E-16 125.1 14.1 107 133-244 51-159 (194)
133 1fp1_D Isoliquiritigenin 2'-O- 99.3 3E-12 1E-16 143.6 12.1 138 133-282 208-359 (372)
134 3dmg_A Probable ribosomal RNA 99.3 3.7E-12 1.3E-16 143.4 12.5 108 133-244 232-342 (381)
135 2b3t_A Protein methyltransfera 99.3 9E-12 3.1E-16 133.8 15.0 129 133-280 108-260 (276)
136 1xdz_A Methyltransferase GIDB; 99.3 2.5E-12 8.5E-17 135.2 9.7 130 133-281 69-200 (240)
137 1fp2_A Isoflavone O-methyltran 99.3 4.2E-12 1.5E-16 141.3 12.1 138 133-282 187-340 (352)
138 3fpf_A Mtnas, putative unchara 99.3 7.1E-12 2.4E-16 135.4 13.2 103 131-242 119-222 (298)
139 1l3i_A Precorrin-6Y methyltran 99.3 4.2E-12 1.4E-16 127.0 10.4 122 133-277 32-154 (192)
140 3lpm_A Putative methyltransfer 99.3 5.9E-12 2E-16 134.0 12.0 132 134-281 49-199 (259)
141 3lbf_A Protein-L-isoaspartate 99.3 8.4E-12 2.9E-16 127.8 12.7 101 133-244 76-176 (210)
142 3q87_B N6 adenine specific DNA 99.3 6E-12 2E-16 125.4 10.9 119 134-282 23-148 (170)
143 3g89_A Ribosomal RNA small sub 99.3 7.3E-12 2.5E-16 132.9 12.2 149 115-282 60-211 (249)
144 3bzb_A Uncharacterized protein 99.3 1.8E-11 6.2E-16 132.1 15.3 137 133-281 78-235 (281)
145 2frn_A Hypothetical protein PH 99.3 9.5E-12 3.3E-16 134.1 12.9 129 133-279 124-253 (278)
146 1fbn_A MJ fibrillarin homologu 99.3 1.2E-11 4E-16 129.2 12.9 134 133-282 73-212 (230)
147 4azs_A Methyltransferase WBDD; 99.3 4.5E-12 1.5E-16 150.2 10.7 145 133-284 65-209 (569)
148 3hp7_A Hemolysin, putative; st 99.3 5.2E-12 1.8E-16 136.5 10.3 142 133-283 84-232 (291)
149 4df3_A Fibrillarin-like rRNA/T 99.3 1.2E-11 4E-16 129.7 12.1 145 130-286 73-220 (233)
150 3dxy_A TRNA (guanine-N(7)-)-me 99.3 6.9E-12 2.4E-16 130.4 10.1 109 134-242 34-150 (218)
151 2fyt_A Protein arginine N-meth 99.3 2.1E-11 7.3E-16 135.2 14.6 103 133-240 63-169 (340)
152 4dzr_A Protein-(glutamine-N5) 99.3 1.9E-12 6.6E-17 132.1 5.6 133 133-281 29-190 (215)
153 3fzg_A 16S rRNA methylase; met 99.3 3.4E-12 1.1E-16 128.6 6.7 146 86-242 5-152 (200)
154 1b7y_A Phers, protein (phenyla 99.3 1.2E-10 3.9E-15 128.9 19.6 113 351-465 103-244 (350)
155 2y1w_A Histone-arginine methyl 99.3 1.6E-11 5.4E-16 136.7 12.7 106 133-242 49-155 (348)
156 1vbf_A 231AA long hypothetical 99.3 3.7E-11 1.3E-15 124.8 14.2 99 133-244 69-167 (231)
157 2fpo_A Methylase YHHF; structu 99.3 9.7E-12 3.3E-16 127.4 9.6 107 134-244 54-162 (202)
158 3q7e_A Protein arginine N-meth 99.3 1.7E-11 5.8E-16 136.5 12.1 106 133-241 65-172 (349)
159 2ld4_A Anamorsin; methyltransf 99.3 3.9E-12 1.3E-16 126.8 6.1 117 132-275 10-128 (176)
160 2ipx_A RRNA 2'-O-methyltransfe 99.3 2.9E-11 9.9E-16 126.3 13.0 143 132-286 75-220 (233)
161 1zg3_A Isoflavanone 4'-O-methy 99.3 1.1E-11 3.6E-16 138.4 10.3 137 134-282 193-346 (358)
162 1nt2_A Fibrillarin-like PRE-rR 99.2 3.5E-11 1.2E-15 124.3 13.4 104 133-242 56-161 (210)
163 1af7_A Chemotaxis receptor met 99.2 1.2E-11 4E-16 133.1 10.1 108 134-242 105-252 (274)
164 1jsx_A Glucose-inhibited divis 99.2 2.6E-11 8.8E-16 123.8 12.2 100 134-242 65-165 (207)
165 3r0q_C Probable protein argini 99.2 2.2E-11 7.6E-16 136.9 12.7 108 132-243 61-170 (376)
166 3id6_C Fibrillarin-like rRNA/T 99.2 4.9E-11 1.7E-15 125.0 14.3 155 115-283 59-216 (232)
167 2esr_A Methyltransferase; stru 99.2 7.8E-12 2.7E-16 124.5 7.7 109 133-245 30-141 (177)
168 2fhp_A Methylase, putative; al 99.2 1.6E-11 5.4E-16 122.9 9.6 111 133-246 43-158 (187)
169 2yxd_A Probable cobalt-precorr 99.2 3.4E-11 1.2E-15 119.5 11.8 120 133-279 34-153 (183)
170 1ws6_A Methyltransferase; stru 99.2 5.5E-12 1.9E-16 124.2 5.8 107 134-246 41-151 (171)
171 1yb2_A Hypothetical protein TA 99.2 2.6E-11 9E-16 130.2 11.6 123 133-280 109-234 (275)
172 2yxe_A Protein-L-isoaspartate 99.2 4.5E-11 1.6E-15 122.8 12.7 102 133-244 76-179 (215)
173 4dcm_A Ribosomal RNA large sub 99.2 5.7E-11 2E-15 133.5 14.0 109 133-244 221-336 (375)
174 3mb5_A SAM-dependent methyltra 99.2 4.3E-11 1.5E-15 126.4 12.1 124 133-281 92-220 (255)
175 2pjd_A Ribosomal RNA small sub 99.2 1.2E-11 4E-16 137.4 7.6 106 134-244 196-305 (343)
176 3ckk_A TRNA (guanine-N(7)-)-me 99.2 3.8E-11 1.3E-15 126.2 11.0 108 133-242 45-168 (235)
177 3bwc_A Spermidine synthase; SA 99.2 3.9E-11 1.3E-15 131.0 11.3 138 133-281 94-238 (304)
178 1dl5_A Protein-L-isoaspartate 99.2 6.3E-11 2.1E-15 130.0 12.8 101 133-243 74-176 (317)
179 3u81_A Catechol O-methyltransf 99.2 2.7E-11 9.3E-16 125.5 9.4 109 134-245 58-173 (221)
180 2pwy_A TRNA (adenine-N(1)-)-me 99.2 6.6E-11 2.3E-15 124.8 12.3 123 133-279 95-220 (258)
181 3ntv_A MW1564 protein; rossman 99.2 3.9E-11 1.3E-15 125.5 10.3 108 134-246 71-180 (232)
182 3gdh_A Trimethylguanosine synt 99.2 3.1E-12 1.1E-16 134.0 1.3 103 134-242 78-181 (241)
183 3dr5_A Putative O-methyltransf 99.2 3.7E-11 1.3E-15 125.1 9.5 125 117-247 40-168 (221)
184 1o9g_A RRNA methyltransferase; 99.2 7.6E-11 2.6E-15 124.5 11.8 124 119-243 37-215 (250)
185 3b3j_A Histone-arginine methyl 99.2 5.4E-11 1.9E-15 137.8 11.5 106 133-242 157-263 (480)
186 3tfw_A Putative O-methyltransf 99.2 1E-10 3.4E-15 123.8 12.5 108 134-246 63-174 (248)
187 3opn_A Putative hemolysin; str 99.2 7.7E-12 2.6E-16 131.4 3.8 140 133-283 36-184 (232)
188 1g6q_1 HnRNP arginine N-methyl 99.2 7.6E-11 2.6E-15 130.1 11.9 105 134-241 38-144 (328)
189 3lec_A NADB-rossmann superfami 99.2 9.9E-11 3.4E-15 122.2 11.6 126 133-281 20-147 (230)
190 3gnl_A Uncharacterized protein 99.2 9.5E-11 3.3E-15 123.3 11.6 126 133-281 20-147 (244)
191 2h00_A Methyltransferase 10 do 99.2 1.1E-11 3.8E-16 131.1 4.3 164 117-280 47-235 (254)
192 3uwp_A Histone-lysine N-methyl 99.2 4.6E-11 1.6E-15 133.7 9.5 124 115-246 159-292 (438)
193 1p91_A Ribosomal RNA large sub 99.2 9.3E-11 3.2E-15 124.9 11.4 97 133-245 84-181 (269)
194 3kr9_A SAM-dependent methyltra 99.2 1.1E-10 3.7E-15 121.7 11.4 126 133-281 14-141 (225)
195 1jg1_A PIMT;, protein-L-isoasp 99.1 2.1E-10 7E-15 120.0 13.2 102 133-244 90-191 (235)
196 3tr6_A O-methyltransferase; ce 99.1 7.5E-11 2.6E-15 122.0 9.8 109 134-247 64-179 (225)
197 2igt_A SAM dependent methyltra 99.1 1.8E-10 6.2E-15 127.3 13.4 125 114-244 136-274 (332)
198 1ixk_A Methyltransferase; open 99.1 1.5E-10 5.2E-15 127.0 12.3 134 133-280 117-272 (315)
199 2ozv_A Hypothetical protein AT 99.1 2E-10 7E-15 122.4 12.3 110 133-242 35-170 (260)
200 3duw_A OMT, O-methyltransferas 99.1 8.1E-11 2.8E-15 121.7 8.9 108 134-246 58-171 (223)
201 4hc4_A Protein arginine N-meth 99.1 1.6E-10 5.6E-15 129.3 11.7 105 134-242 83-189 (376)
202 2gpy_A O-methyltransferase; st 99.1 1.6E-10 5.6E-15 120.4 10.6 108 134-246 54-164 (233)
203 1wy7_A Hypothetical protein PH 99.1 1.2E-09 4E-14 111.5 16.7 124 133-279 48-171 (207)
204 3adn_A Spermidine synthase; am 99.1 1.8E-10 6E-15 125.3 11.1 109 133-242 82-198 (294)
205 2pbf_A Protein-L-isoaspartate 99.1 2.2E-10 7.5E-15 118.8 11.3 101 133-243 79-194 (227)
206 1ej0_A FTSJ; methyltransferase 99.1 1.5E-10 5E-15 113.7 9.4 99 133-244 21-138 (180)
207 2vdv_E TRNA (guanine-N(7)-)-me 99.1 3.3E-10 1.1E-14 119.5 12.6 110 133-242 48-173 (246)
208 3r3h_A O-methyltransferase, SA 99.1 5.7E-11 1.9E-15 125.4 6.6 109 134-247 60-175 (242)
209 2b25_A Hypothetical protein; s 99.1 1.2E-10 4.3E-15 128.5 9.7 105 133-244 104-221 (336)
210 1u2z_A Histone-lysine N-methyl 99.1 2.9E-10 9.8E-15 129.4 12.8 110 133-245 241-362 (433)
211 1g8a_A Fibrillarin-like PRE-rR 99.1 4.6E-10 1.6E-14 116.4 13.4 105 132-242 71-178 (227)
212 1o54_A SAM-dependent O-methylt 99.1 2.3E-10 7.9E-15 122.8 11.4 124 133-281 111-237 (277)
213 1ne2_A Hypothetical protein TA 99.1 8.7E-10 3E-14 112.0 14.9 97 133-242 50-146 (200)
214 1r18_A Protein-L-isoaspartate( 99.1 1.9E-10 6.7E-15 119.5 10.3 102 133-244 83-196 (227)
215 3v97_A Ribosomal RNA large sub 99.1 6.9E-10 2.3E-14 134.2 16.1 122 113-244 525-659 (703)
216 1i1n_A Protein-L-isoaspartate 99.1 4E-10 1.4E-14 116.7 12.1 102 133-244 76-184 (226)
217 3c3p_A Methyltransferase; NP_9 99.1 2.8E-10 9.6E-15 116.7 9.9 106 134-246 56-164 (210)
218 3a27_A TYW2, uncharacterized p 99.1 2.9E-10 9.8E-15 122.1 10.2 104 133-245 118-222 (272)
219 2hnk_A SAM-dependent O-methylt 99.1 3.3E-10 1.1E-14 118.8 10.1 108 134-246 60-185 (239)
220 2b78_A Hypothetical protein SM 99.1 2.5E-10 8.6E-15 128.7 9.5 126 113-244 197-333 (385)
221 1i9g_A Hypothetical protein RV 99.0 5.3E-10 1.8E-14 119.7 11.4 103 133-244 98-205 (280)
222 1sui_A Caffeoyl-COA O-methyltr 99.0 3.8E-10 1.3E-14 119.5 9.9 108 134-246 79-194 (247)
223 3tma_A Methyltransferase; thum 99.0 8E-10 2.7E-14 123.0 12.6 109 133-243 202-318 (354)
224 2plw_A Ribosomal RNA methyltra 99.0 1.1E-09 3.7E-14 111.1 12.4 100 133-243 21-155 (201)
225 3gjy_A Spermidine synthase; AP 99.0 4.1E-10 1.4E-14 123.0 9.6 109 135-243 90-201 (317)
226 2avd_A Catechol-O-methyltransf 99.0 4.1E-10 1.4E-14 116.8 8.9 109 133-246 68-183 (229)
227 2yvl_A TRMI protein, hypotheti 99.0 1.4E-09 4.9E-14 113.8 13.0 101 133-243 90-191 (248)
228 3c0k_A UPF0064 protein YCCW; P 99.0 1.1E-09 3.6E-14 124.0 12.6 122 114-244 207-341 (396)
229 2qm3_A Predicted methyltransfe 99.0 1.9E-09 6.5E-14 121.0 14.1 105 134-242 172-278 (373)
230 1mjf_A Spermidine synthase; sp 99.0 3.2E-10 1.1E-14 122.3 7.3 107 133-242 74-193 (281)
231 4dmg_A Putative uncharacterize 99.0 1.2E-09 4E-14 123.4 12.1 123 113-244 199-328 (393)
232 1xj5_A Spermidine synthase 1; 99.0 7.2E-10 2.5E-14 122.5 10.1 110 133-242 119-235 (334)
233 2bm8_A Cephalosporin hydroxyla 99.0 4.8E-10 1.6E-14 117.9 8.3 99 134-243 81-188 (236)
234 3c3y_A Pfomt, O-methyltransfer 99.0 1.1E-09 3.7E-14 115.1 10.5 119 119-246 59-185 (237)
235 2i7c_A Spermidine synthase; tr 99.0 6.9E-10 2.4E-14 119.9 9.2 109 133-242 77-192 (283)
236 3cbg_A O-methyltransferase; cy 99.0 6.9E-10 2.4E-14 116.1 8.8 109 134-247 72-187 (232)
237 2as0_A Hypothetical protein PH 99.0 8.7E-10 3E-14 124.7 10.2 111 134-244 217-337 (396)
238 3tm4_A TRNA (guanine N2-)-meth 99.0 2.6E-09 8.9E-14 119.9 13.7 126 133-280 216-349 (373)
239 3k6r_A Putative transferase PH 99.0 2.5E-09 8.5E-14 115.0 12.9 127 133-277 124-251 (278)
240 3ajd_A Putative methyltransfer 99.0 8.2E-10 2.8E-14 118.6 9.0 113 133-245 82-214 (274)
241 1uir_A Polyamine aminopropyltr 99.0 6.4E-10 2.2E-14 122.0 7.7 109 133-242 76-195 (314)
242 2yxl_A PH0851 protein, 450AA l 99.0 3.5E-09 1.2E-13 121.9 14.0 113 133-245 258-392 (450)
243 3sso_A Methyltransferase; macr 99.0 5.2E-10 1.8E-14 125.0 6.7 101 133-245 215-327 (419)
244 1nv8_A HEMK protein; class I a 99.0 2.5E-09 8.6E-14 115.6 12.0 105 134-242 123-249 (284)
245 1iy9_A Spermidine synthase; ro 99.0 6.4E-10 2.2E-14 119.7 7.3 109 133-242 74-189 (275)
246 2o07_A Spermidine synthase; st 98.9 1.2E-09 4.2E-14 119.2 9.1 109 133-242 94-209 (304)
247 2pt6_A Spermidine synthase; tr 98.9 1E-09 3.5E-14 120.8 7.7 109 133-242 115-230 (321)
248 1inl_A Spermidine synthase; be 98.9 1.3E-09 4.4E-14 118.5 8.0 108 134-242 90-205 (296)
249 2b2c_A Spermidine synthase; be 98.9 8.5E-10 2.9E-14 121.0 6.6 108 134-242 108-222 (314)
250 2f8l_A Hypothetical protein LM 98.9 3.8E-09 1.3E-13 117.1 11.4 129 133-276 129-279 (344)
251 2wa2_A Non-structural protein 98.9 1E-09 3.5E-14 118.1 6.4 104 132-243 80-194 (276)
252 3lcv_B Sisomicin-gentamicin re 98.9 1.3E-09 4.3E-14 114.8 6.6 135 133-278 131-267 (281)
253 2oxt_A Nucleoside-2'-O-methylt 98.9 1.1E-09 3.7E-14 117.2 5.9 104 133-244 73-187 (265)
254 3frh_A 16S rRNA methylase; met 98.9 6.5E-09 2.2E-13 108.4 11.4 103 133-242 104-206 (253)
255 1wxx_A TT1595, hypothetical pr 98.9 2.4E-09 8.3E-14 120.5 8.6 110 134-244 209-327 (382)
256 2nyu_A Putative ribosomal RNA 98.9 5.3E-09 1.8E-13 105.4 10.3 100 133-243 21-146 (196)
257 1zq9_A Probable dimethyladenos 98.9 5.9E-09 2E-13 112.7 11.1 92 114-215 13-105 (285)
258 2frx_A Hypothetical protein YE 98.9 9.1E-09 3.1E-13 119.0 13.2 111 134-245 117-249 (479)
259 2cmg_A Spermidine synthase; tr 98.9 2.5E-09 8.4E-14 114.3 7.5 97 133-242 71-171 (262)
260 3dou_A Ribosomal RNA large sub 98.8 9.5E-09 3.3E-13 104.4 11.3 99 133-243 24-140 (191)
261 2jjq_A Uncharacterized RNA met 98.8 3.2E-08 1.1E-12 112.9 16.8 99 133-242 289-387 (425)
262 3m4x_A NOL1/NOP2/SUN family pr 98.8 3.8E-09 1.3E-13 121.1 8.5 135 133-280 104-260 (456)
263 3m6w_A RRNA methylase; rRNA me 98.8 3.7E-09 1.3E-13 121.4 7.8 111 133-245 100-232 (464)
264 2yx1_A Hypothetical protein MJ 98.8 1.1E-08 3.8E-13 113.2 11.3 100 133-245 194-294 (336)
265 2h1r_A Dimethyladenosine trans 98.8 1.3E-08 4.5E-13 110.7 11.7 98 107-214 20-117 (299)
266 1sqg_A SUN protein, FMU protei 98.8 1.4E-08 4.8E-13 116.1 11.8 112 133-245 245-377 (429)
267 1uwv_A 23S rRNA (uracil-5-)-me 98.8 6.2E-08 2.1E-12 110.8 16.7 149 115-287 268-418 (433)
268 2p41_A Type II methyltransfera 98.8 4.7E-09 1.6E-13 114.6 6.1 103 133-243 81-192 (305)
269 3pco_A Phenylalanyl-tRNA synth 98.7 6.5E-08 2.2E-12 105.7 14.4 110 351-464 109-233 (327)
270 2xyq_A Putative 2'-O-methyl tr 98.7 7.4E-08 2.5E-12 104.2 12.9 117 132-281 61-195 (290)
271 1qam_A ERMC' methyltransferase 98.7 5E-08 1.7E-12 102.9 10.4 75 133-212 29-103 (244)
272 3bt7_A TRNA (uracil-5-)-methyl 98.7 2.5E-08 8.7E-13 111.7 7.9 128 135-287 214-355 (369)
273 2okc_A Type I restriction enzy 98.6 6.2E-08 2.1E-12 111.2 10.1 108 133-243 170-308 (445)
274 2ih2_A Modification methylase 98.6 7.4E-08 2.5E-12 109.2 9.9 119 134-275 39-186 (421)
275 1yub_A Ermam, rRNA methyltrans 98.6 4.7E-09 1.6E-13 110.7 -0.9 119 113-242 13-145 (245)
276 2rhq_A Phenylalanyl-tRNA synth 98.6 6.8E-08 2.3E-12 104.8 7.7 114 350-466 54-184 (294)
277 3ldu_A Putative methylase; str 98.6 3E-07 1E-11 103.6 13.2 108 133-243 194-345 (385)
278 3gru_A Dimethyladenosine trans 98.6 2.8E-07 9.5E-12 100.0 12.3 92 113-214 34-125 (295)
279 3k0b_A Predicted N6-adenine-sp 98.5 3.5E-07 1.2E-11 103.2 13.3 108 133-243 200-351 (393)
280 3l4g_A Phenylalanyl-tRNA synth 98.5 3.6E-07 1.2E-11 104.9 13.1 30 418-447 349-378 (508)
281 2qfm_A Spermine synthase; sper 98.5 8.5E-08 2.9E-12 106.1 6.7 111 133-243 187-315 (364)
282 3ldg_A Putative uncharacterize 98.5 7E-07 2.4E-11 100.4 14.2 108 133-243 193-344 (384)
283 3tqs_A Ribosomal RNA small sub 98.5 3.5E-07 1.2E-11 97.2 10.1 96 107-211 7-104 (255)
284 2dul_A N(2),N(2)-dimethylguano 98.5 3.1E-07 1.1E-11 103.0 10.0 102 134-242 47-164 (378)
285 3fut_A Dimethyladenosine trans 98.4 1.1E-06 3.7E-11 94.2 12.8 100 107-218 25-124 (271)
286 3axs_A Probable N(2),N(2)-dime 98.4 2.1E-07 7.1E-12 104.8 7.2 102 134-242 52-158 (392)
287 2b9e_A NOL1/NOP2/SUN domain fa 98.4 8.9E-07 3.1E-11 96.7 11.9 111 133-244 101-236 (309)
288 3b5i_A S-adenosyl-L-methionine 98.4 2.4E-06 8.1E-11 95.5 13.5 113 134-246 52-229 (374)
289 2r6z_A UPF0341 protein in RSP 98.3 2.4E-07 8.3E-12 98.6 5.1 82 134-216 83-174 (258)
290 3ftd_A Dimethyladenosine trans 98.3 1.9E-06 6.5E-11 91.1 11.0 100 107-217 9-108 (249)
291 2efj_A 3,7-dimethylxanthine me 98.2 8.2E-06 2.8E-10 91.2 14.1 111 135-247 53-230 (384)
292 4gqb_A Protein arginine N-meth 98.2 4.8E-06 1.6E-10 98.6 12.8 102 134-239 357-464 (637)
293 3uzu_A Ribosomal RNA small sub 98.2 2.5E-06 8.6E-11 91.7 9.6 85 106-199 19-106 (279)
294 2ar0_A M.ecoki, type I restric 98.2 1.8E-06 6.3E-11 101.3 9.0 110 133-243 168-313 (541)
295 2i4l_A Proline-tRNA ligase; al 98.2 3.4E-06 1.2E-10 97.0 9.5 116 344-461 63-197 (458)
296 3v97_A Ribosomal RNA large sub 98.2 9E-06 3.1E-10 98.3 13.5 110 133-242 189-347 (703)
297 1m6e_X S-adenosyl-L-methionnin 98.1 6.5E-06 2.2E-10 91.3 10.4 115 133-247 50-214 (359)
298 3evf_A RNA-directed RNA polyme 98.1 4.3E-06 1.5E-10 88.5 7.8 110 131-244 71-186 (277)
299 1z7m_A ATP phosphoribosyltrans 98.1 1.3E-05 4.6E-10 88.6 12.1 104 345-451 33-152 (344)
300 1m6y_A S-adenosyl-methyltransf 98.1 2.9E-06 9.8E-11 92.3 6.4 78 133-211 25-106 (301)
301 3ll7_A Putative methyltransfer 98.1 1.5E-06 5.3E-11 98.0 3.9 78 134-212 93-172 (410)
302 3o4f_A Spermidine synthase; am 98.0 2.1E-05 7.3E-10 84.7 12.2 126 114-242 65-198 (294)
303 3od1_A ATP phosphoribosyltrans 98.0 1.6E-05 5.6E-10 89.7 11.5 104 345-450 21-137 (400)
304 1qyr_A KSGA, high level kasuga 98.0 7.2E-06 2.5E-10 86.9 7.9 93 114-217 6-103 (252)
305 3ua3_A Protein arginine N-meth 98.0 5.3E-06 1.8E-10 98.1 7.5 105 135-239 410-531 (745)
306 1htt_A Histidyl-tRNA synthetas 98.0 1.5E-05 5.1E-10 90.7 10.9 105 345-451 15-136 (423)
307 1h4v_B Histidyl-tRNA synthetas 98.0 1.8E-05 6E-10 90.1 11.2 105 345-451 14-136 (421)
308 1evl_A Threonyl-tRNA synthetas 98.0 4.8E-06 1.7E-10 94.2 6.2 108 345-457 27-155 (401)
309 2oyr_A UPF0341 protein YHIQ; a 98.0 5.1E-06 1.7E-10 88.3 5.7 96 136-236 90-194 (258)
310 3cvo_A Methyltransferase-like 98.0 5.5E-05 1.9E-09 77.2 13.1 100 134-242 30-154 (202)
311 3lkd_A Type I restriction-modi 98.0 4.3E-05 1.5E-09 89.5 13.9 130 115-244 202-360 (542)
312 1qe0_A Histidyl-tRNA synthetas 98.0 8.7E-06 3E-10 92.5 7.6 117 345-463 13-152 (420)
313 4e51_A Histidine--tRNA ligase; 98.0 2E-05 6.8E-10 90.8 10.6 118 345-463 43-181 (467)
314 1wu7_A Histidyl-tRNA synthetas 97.9 2.2E-05 7.6E-10 89.6 10.7 104 345-450 17-133 (434)
315 2dq3_A Seryl-tRNA synthetase; 97.9 1.2E-05 4E-10 91.5 8.0 114 345-464 169-305 (425)
316 3s1s_A Restriction endonucleas 97.9 5E-05 1.7E-09 91.2 13.0 111 133-244 320-467 (878)
317 3rac_A Histidine-tRNA ligase; 97.9 4.9E-05 1.7E-09 85.0 11.9 115 347-463 36-175 (373)
318 3lc0_A Histidyl-tRNA synthetas 97.9 3E-05 1E-09 89.0 10.1 117 346-464 41-175 (456)
319 2j3l_A Prolyl-tRNA synthetase; 97.9 3.3E-05 1.1E-09 91.3 10.9 115 345-461 44-177 (572)
320 2qy6_A UPF0209 protein YFCK; s 97.9 1E-05 3.4E-10 86.0 5.5 128 134-280 60-232 (257)
321 3khk_A Type I restriction-modi 97.8 4.4E-05 1.5E-09 89.5 10.2 108 136-244 246-397 (544)
322 3gcz_A Polyprotein; flavivirus 97.8 1.9E-05 6.4E-10 83.8 6.1 106 132-244 88-203 (282)
323 1hc7_A Prolyl-tRNA synthetase; 97.8 3.7E-05 1.3E-09 88.7 8.9 115 346-461 42-178 (477)
324 4g84_A Histidine--tRNA ligase, 97.8 9.6E-05 3.3E-09 85.0 12.2 117 345-464 25-159 (464)
325 1nyr_A Threonyl-tRNA synthetas 97.8 3.9E-05 1.3E-09 92.0 9.0 109 345-456 268-397 (645)
326 3uh0_A Threonyl-tRNA synthetas 97.7 6.1E-05 2.1E-09 86.5 9.6 115 345-462 61-198 (460)
327 1nj8_A Proline-tRNA synthetase 97.7 5E-05 1.7E-09 87.3 8.7 117 345-462 35-175 (459)
328 4g85_A Histidine-tRNA ligase, 97.7 9.2E-05 3.1E-09 86.5 11.0 118 344-464 77-212 (517)
329 3ial_A Prolyl-tRNA synthetase; 97.7 6.2E-05 2.1E-09 87.2 9.3 132 345-477 52-210 (518)
330 1nj1_A PROR, proline-tRNA synt 97.7 6.1E-05 2.1E-09 87.5 8.7 117 345-463 68-208 (501)
331 3a32_A Probable threonyl-tRNA 97.7 4.3E-05 1.5E-09 88.2 7.3 101 346-449 47-170 (471)
332 3net_A Histidyl-tRNA synthetas 97.6 8.2E-05 2.8E-09 85.7 8.7 120 345-465 23-175 (465)
333 2k4m_A TR8_protein, UPF0146 pr 97.6 6.1E-05 2.1E-09 72.2 6.2 88 134-245 35-124 (153)
334 1ses_A Seryl-tRNA synthetase; 97.6 0.00012 4E-09 83.2 9.5 129 345-474 163-314 (421)
335 3lss_A Seryl-tRNA synthetase; 97.6 5E-05 1.7E-09 86.9 6.6 116 345-464 205-345 (484)
336 1qf6_A THRRS, threonyl-tRNA sy 97.6 4.1E-05 1.4E-09 91.6 5.6 108 345-457 268-396 (642)
337 2dq0_A Seryl-tRNA synthetase; 97.6 6.3E-05 2.2E-09 86.1 6.5 117 345-464 190-326 (455)
338 2wk1_A NOVP; transferase, O-me 97.6 0.00019 6.6E-09 77.0 9.9 129 133-278 105-267 (282)
339 4hvc_A Bifunctional glutamate/ 97.6 0.00012 4E-09 85.1 8.7 119 345-464 58-199 (519)
340 4fzv_A Putative methyltransfer 97.6 0.00016 5.3E-09 80.4 9.4 114 132-246 146-288 (359)
341 3vbb_A Seryl-tRNA synthetase, 97.5 0.00012 4.1E-09 84.3 8.3 130 345-477 198-363 (522)
342 3qne_A Seryl-tRNA synthetase, 97.5 0.00014 4.8E-09 83.2 8.6 128 345-476 182-337 (485)
343 1wle_A Seryl-tRNA synthetase; 97.5 0.00032 1.1E-08 80.9 11.4 117 345-464 216-357 (501)
344 3err_A Fusion protein of micro 97.5 0.00025 8.5E-09 82.6 10.5 125 345-476 272-425 (536)
345 3eld_A Methyltransferase; flav 97.5 9.8E-05 3.4E-09 78.8 6.2 108 132-244 79-193 (300)
346 1ati_A Glycyl-tRNA synthetase; 97.4 0.00027 9.2E-09 82.1 8.2 48 415-463 207-258 (505)
347 4auk_A Ribosomal RNA large sub 97.3 0.00045 1.5E-08 76.4 9.5 87 133-235 210-296 (375)
348 1usy_A ATP phosphoribosyltrans 97.3 0.00019 6.6E-09 76.8 6.4 101 354-463 6-118 (275)
349 3c6k_A Spermine synthase; sper 97.3 0.00029 9.8E-09 78.3 7.5 110 133-242 204-331 (381)
350 3m4p_A Ehasnrs, asparaginyl-tR 97.3 0.00015 5E-09 83.0 5.0 46 11-57 20-69 (456)
351 2cja_A Seryl-tRNA synthetase; 97.1 0.00022 7.6E-09 82.5 3.4 115 345-462 228-393 (522)
352 2px2_A Genome polyprotein [con 97.0 0.00051 1.8E-08 71.8 4.9 112 122-244 62-185 (269)
353 3ufb_A Type I restriction-modi 97.0 0.0057 2E-07 71.4 14.3 126 115-244 202-364 (530)
354 2xgt_A Asparaginyl-tRNA synthe 97.0 0.00032 1.1E-08 79.9 3.5 42 13-55 3-48 (435)
355 3lkz_A Non-structural protein 97.0 0.003 1E-07 67.1 10.5 107 133-245 93-207 (321)
356 1wg8_A Predicted S-adenosylmet 96.8 0.0015 5.2E-08 69.6 7.1 58 133-195 21-78 (285)
357 2vz8_A Fatty acid synthase; tr 96.8 0.00037 1.3E-08 95.0 3.0 141 133-279 1239-1391(2512)
358 2zig_A TTHA0409, putative modi 96.8 0.0021 7.3E-08 69.3 8.2 47 133-180 234-280 (297)
359 3p8z_A Mtase, non-structural p 96.7 0.0076 2.6E-07 62.1 10.7 108 132-245 76-189 (267)
360 3mf2_A BLL0957 protein; aminoa 96.5 0.0042 1.4E-07 67.7 7.8 130 345-477 61-232 (346)
361 2zt5_A Glycyl-tRNA synthetase; 96.5 0.0011 3.9E-08 79.5 3.7 53 395-447 237-300 (693)
362 3bju_A Lysyl-tRNA synthetase; 96.4 0.00096 3.3E-08 77.5 1.8 50 8-57 32-94 (521)
363 1rjd_A PPM1P, carboxy methyl t 96.3 0.043 1.5E-06 60.2 14.9 110 134-245 97-235 (334)
364 2du7_A O-phosphoseryl-tRNA syn 96.3 0.0034 1.1E-07 72.5 5.8 67 399-465 194-269 (549)
365 2odr_B Phosphoseryl-tRNA synth 96.1 0.0024 8.1E-08 74.4 3.4 67 399-465 201-276 (648)
366 2odr_A Phosphoseryl-tRNA synth 96.1 0.0025 8.5E-08 74.3 3.4 67 399-465 201-276 (665)
367 2odr_D Phosphoseryl-tRNA synth 96.1 0.0026 8.9E-08 74.2 3.4 67 399-465 201-276 (685)
368 2odr_C Phosphoseryl-tRNA synth 96.0 0.0029 9.7E-08 74.1 3.4 67 399-465 201-276 (701)
369 3ikl_A DNA polymerase subunit 95.9 0.016 5.4E-07 66.0 8.9 109 347-465 103-227 (459)
370 2du3_A O-phosphoseryl-tRNA syn 95.9 0.012 4E-07 68.1 7.9 68 398-465 181-257 (534)
371 3cmq_A Phenylalanyl-tRNA synth 95.7 0.015 5E-07 65.7 7.5 45 398-444 114-160 (415)
372 1g5h_A Mitochondrial DNA polym 95.6 0.011 3.7E-07 67.7 6.1 117 347-464 61-216 (454)
373 3vyw_A MNMC2; tRNA wobble urid 95.6 0.026 9E-07 60.9 8.7 128 134-280 96-245 (308)
374 3r24_A NSP16, 2'-O-methyl tran 95.6 0.042 1.4E-06 58.4 9.9 111 118-245 93-220 (344)
375 3g7u_A Cytosine-specific methy 95.0 0.068 2.3E-06 59.6 10.0 127 136-277 3-145 (376)
376 2uyo_A Hypothetical protein ML 95.0 0.27 9.3E-06 53.2 14.3 107 136-244 104-220 (310)
377 1i4w_A Mitochondrial replicati 94.9 0.099 3.4E-06 57.7 10.8 87 106-195 29-117 (353)
378 1g60_A Adenine-specific methyl 94.8 0.041 1.4E-06 58.0 6.9 47 133-180 211-257 (260)
379 1g55_A DNA cytosine methyltran 94.1 0.046 1.6E-06 60.2 5.8 129 135-278 2-144 (343)
380 2rhq_B Phenylalanyl-tRNA synth 93.6 0.2 6.9E-06 61.1 10.7 114 350-465 494-632 (795)
381 2c7p_A Modification methylase 93.4 0.15 5.1E-06 55.7 8.2 127 135-278 11-148 (327)
382 2oo3_A Protein involved in cat 93.0 0.079 2.7E-06 56.4 4.9 105 135-244 92-200 (283)
383 3l4g_B Phenylalanyl-tRNA synth 92.9 0.24 8.1E-06 58.5 9.5 113 352-465 394-522 (589)
384 3tka_A Ribosomal RNA small sub 92.9 0.062 2.1E-06 58.6 4.0 42 133-174 56-99 (347)
385 3tos_A CALS11; methyltransfera 92.7 0.93 3.2E-05 47.6 12.7 181 81-280 18-244 (257)
386 3qv2_A 5-cytosine DNA methyltr 92.0 0.27 9.1E-06 53.7 7.8 129 134-278 9-155 (327)
387 3cmq_A Phenylalanyl-tRNA synth 92.0 0.11 3.7E-06 58.6 4.7 56 776-852 238-296 (415)
388 3ig2_A Phenylalanyl-tRNA synth 92.0 0.2 6.8E-06 51.2 6.3 114 351-465 6-151 (213)
389 2rhq_A Phenylalanyl-tRNA synth 91.9 0.12 4.2E-06 55.5 4.9 25 828-852 251-275 (294)
390 3ica_A Phenylalanyl-tRNA synth 91.7 0.26 8.9E-06 50.3 6.9 114 351-465 6-151 (213)
391 2py6_A Methyltransferase FKBM; 89.2 0.69 2.3E-05 52.0 8.1 61 133-193 225-292 (409)
392 3ubt_Y Modification methylase 88.7 1.5 5E-05 47.4 10.0 126 136-278 1-138 (331)
393 3iei_A Leucine carboxyl methyl 88.7 7.3 0.00025 42.4 15.5 144 134-279 90-277 (334)
394 2du3_A O-phosphoseryl-tRNA syn 88.4 0.38 1.3E-05 55.5 5.2 25 828-852 322-346 (534)
395 3ps9_A TRNA 5-methylaminomethy 88.0 0.68 2.3E-05 55.4 7.4 128 134-280 66-238 (676)
396 1b7y_B Phers, protein (phenyla 88.0 0.94 3.2E-05 55.1 8.6 107 350-465 490-620 (785)
397 2qrv_A DNA (cytosine-5)-methyl 87.6 0.69 2.4E-05 49.6 6.4 74 133-211 14-91 (295)
398 1f8f_A Benzyl alcohol dehydrog 87.4 1.1 3.7E-05 49.3 8.1 97 132-242 188-289 (371)
399 4h0n_A DNMT2; SAH binding, tra 86.6 0.53 1.8E-05 51.4 4.9 76 136-216 4-82 (333)
400 2dph_A Formaldehyde dismutase; 86.5 1.5 5.1E-05 48.7 8.6 101 132-242 183-299 (398)
401 1kol_A Formaldehyde dehydrogen 85.5 0.59 2E-05 51.9 4.7 102 132-242 183-300 (398)
402 1pl8_A Human sorbitol dehydrog 85.3 0.55 1.9E-05 51.4 4.2 97 132-242 169-273 (356)
403 3s2e_A Zinc-containing alcohol 84.8 1.2 4.3E-05 48.1 6.8 97 132-242 164-263 (340)
404 4ej6_A Putative zinc-binding d 84.7 0.68 2.3E-05 51.0 4.7 98 132-243 180-285 (370)
405 3pvc_A TRNA 5-methylaminomethy 84.0 1.4 4.9E-05 52.7 7.4 128 134-280 58-230 (689)
406 3two_A Mannitol dehydrogenase; 83.4 1.4 4.9E-05 47.8 6.5 91 132-242 174-265 (348)
407 3fpc_A NADP-dependent alcohol 83.4 0.76 2.6E-05 50.1 4.3 98 132-243 164-267 (352)
408 1boo_A Protein (N-4 cytosine-s 82.6 1.6 5.4E-05 47.3 6.3 46 133-179 251-296 (323)
409 1e3j_A NADP(H)-dependent ketos 82.3 2.7 9.4E-05 45.6 8.3 97 132-242 166-271 (352)
410 3me5_A Cytosine-specific methy 81.8 3.6 0.00012 47.1 9.3 133 135-278 88-255 (482)
411 3jv7_A ADH-A; dehydrogenase, n 81.0 0.63 2.2E-05 50.6 2.4 97 132-243 169-271 (345)
412 4dvj_A Putative zinc-dependent 80.8 1.6 5.4E-05 47.9 5.6 93 134-241 171-269 (363)
413 1eg2_A Modification methylase 80.2 2.5 8.6E-05 45.7 6.9 46 133-179 241-289 (319)
414 2h6e_A ADH-4, D-arabinose 1-de 80.0 1 3.6E-05 48.9 3.8 95 134-242 170-269 (344)
415 1uuf_A YAHK, zinc-type alcohol 80.0 1.1 3.9E-05 49.3 4.1 96 132-242 192-288 (369)
416 3uog_A Alcohol dehydrogenase; 79.3 1.3 4.4E-05 48.6 4.3 98 131-243 186-288 (363)
417 3m6i_A L-arabinitol 4-dehydrog 79.1 1.6 5.3E-05 47.8 4.9 99 132-243 177-284 (363)
418 1v3u_A Leukotriene B4 12- hydr 79.1 2.9 9.9E-05 45.0 6.9 94 132-242 143-244 (333)
419 2zig_A TTHA0409, putative modi 78.4 1 3.5E-05 48.1 3.1 91 184-278 21-131 (297)
420 2d8a_A PH0655, probable L-thre 78.2 1.9 6.6E-05 46.8 5.2 95 134-242 167-267 (348)
421 1pqw_A Polyketide synthase; ro 77.1 0.92 3.2E-05 44.9 2.1 93 132-242 36-137 (198)
422 1jvb_A NAD(H)-dependent alcoho 76.2 2.5 8.6E-05 45.8 5.5 96 132-242 168-271 (347)
423 3gms_A Putative NADPH:quinone 76.0 1.2 4.1E-05 48.3 2.8 96 131-242 141-243 (340)
424 1piw_A Hypothetical zinc-type 75.6 2.5 8.7E-05 46.1 5.3 97 132-242 177-276 (360)
425 3qtc_A Pyrrolysyl-tRNA synthet 75.4 1.8 6.3E-05 46.1 4.0 56 777-853 222-277 (290)
426 4b7c_A Probable oxidoreductase 74.9 3.2 0.00011 44.6 5.9 97 132-242 147-248 (336)
427 2jhf_A Alcohol dehydrogenase E 74.8 2.2 7.5E-05 46.8 4.5 98 131-242 188-293 (374)
428 2du7_A O-phosphoseryl-tRNA syn 74.5 5.4 0.00018 46.1 7.7 72 779-873 292-375 (549)
429 1cdo_A Alcohol dehydrogenase; 74.4 2.5 8.4E-05 46.4 4.8 98 131-242 189-294 (374)
430 3fbg_A Putative arginate lyase 74.2 3.3 0.00011 44.8 5.8 93 134-241 150-247 (346)
431 3ip1_A Alcohol dehydrogenase, 73.8 4.9 0.00017 44.6 7.1 100 131-243 210-319 (404)
432 2j3h_A NADP-dependent oxidored 73.5 5.9 0.0002 42.7 7.6 95 132-242 153-255 (345)
433 2fzw_A Alcohol dehydrogenase c 73.5 2.2 7.5E-05 46.8 4.1 98 131-242 187-292 (373)
434 1vj0_A Alcohol dehydrogenase, 73.1 4.5 0.00015 44.5 6.6 97 132-242 193-298 (380)
435 1p0f_A NADP-dependent alcohol 72.6 2.1 7E-05 47.0 3.6 98 131-242 188-293 (373)
436 3goh_A Alcohol dehydrogenase, 72.5 4.3 0.00015 43.3 6.0 90 130-242 138-229 (315)
437 3uko_A Alcohol dehydrogenase c 72.3 1.3 4.3E-05 48.9 1.8 99 131-243 190-296 (378)
438 3fwz_A Inner membrane protein 72.3 5.5 0.00019 37.0 6.1 95 135-242 7-105 (140)
439 1rjw_A ADH-HT, alcohol dehydro 72.1 4.5 0.00015 43.7 6.1 94 133-242 163-261 (339)
440 1e3i_A Alcohol dehydrogenase, 71.0 2.5 8.4E-05 46.5 3.8 98 131-242 192-297 (376)
441 1yb5_A Quinone oxidoreductase; 70.7 8.7 0.0003 41.7 8.1 97 131-242 167-269 (351)
442 3nx4_A Putative oxidoreductase 70.0 8.9 0.0003 40.8 7.9 91 137-242 149-241 (324)
443 2hcy_A Alcohol dehydrogenase 1 69.2 2 6.9E-05 46.6 2.6 95 132-242 167-269 (347)
444 1lss_A TRK system potassium up 68.7 53 0.0018 29.4 12.0 93 134-241 3-101 (140)
445 3oig_A Enoyl-[acyl-carrier-pro 68.6 21 0.00073 36.5 10.3 109 134-243 6-148 (266)
446 4eye_A Probable oxidoreductase 68.4 1.8 6.2E-05 47.0 1.9 96 131-242 156-257 (342)
447 2dq4_A L-threonine 3-dehydroge 68.0 4.5 0.00015 43.7 5.0 94 134-242 164-262 (343)
448 2eih_A Alcohol dehydrogenase; 68.0 11 0.00038 40.5 8.2 95 131-242 163-265 (343)
449 2b5w_A Glucose dehydrogenase; 67.5 4 0.00014 44.4 4.5 91 136-243 174-274 (357)
450 3qwb_A Probable quinone oxidor 66.4 2.6 8.8E-05 45.5 2.6 97 131-242 145-247 (334)
451 3jyn_A Quinone oxidoreductase; 65.5 2.6 9E-05 45.2 2.5 97 131-243 137-240 (325)
452 3c85_A Putative glutathione-re 65.4 32 0.0011 33.0 10.2 94 135-242 39-139 (183)
453 4dcm_A Ribosomal RNA large sub 65.1 35 0.0012 37.4 11.6 100 134-243 38-137 (375)
454 3llv_A Exopolyphosphatase-rela 64.8 39 0.0013 30.8 10.3 92 135-242 6-103 (141)
455 1zkd_A DUF185; NESG, RPR58, st 64.4 19 0.00064 40.0 9.1 78 133-218 79-164 (387)
456 1boo_A Protein (N-4 cytosine-s 63.4 4.3 0.00015 43.8 3.7 58 185-242 15-84 (323)
457 2c0c_A Zinc binding alcohol de 62.7 4.6 0.00016 44.1 3.8 96 132-242 161-261 (362)
458 4eez_A Alcohol dehydrogenase 1 62.7 5.8 0.0002 42.7 4.6 97 132-242 161-263 (348)
459 1qor_A Quinone oxidoreductase; 60.8 4.4 0.00015 43.4 3.2 94 131-242 137-239 (327)
460 3l9w_A Glutathione-regulated p 60.4 41 0.0014 37.4 11.2 94 134-242 3-102 (413)
461 2zb4_A Prostaglandin reductase 60.3 12 0.00042 40.4 6.7 94 133-242 157-260 (357)
462 4f3n_A Uncharacterized ACR, CO 60.3 18 0.00061 40.7 8.0 45 135-179 138-188 (432)
463 4dkj_A Cytosine-specific methy 60.1 13 0.00046 41.3 7.0 45 135-179 10-60 (403)
464 2j8z_A Quinone oxidoreductase; 59.6 5.5 0.00019 43.3 3.8 97 131-242 159-261 (354)
465 4a2c_A Galactitol-1-phosphate 59.0 7.2 0.00025 41.9 4.5 98 132-243 158-261 (346)
466 1iz0_A Quinone oxidoreductase; 58.9 3.5 0.00012 43.7 2.0 93 132-242 123-218 (302)
467 3krt_A Crotonyl COA reductase; 58.9 21 0.00072 40.1 8.6 97 131-242 225-344 (456)
468 1tt7_A YHFP; alcohol dehydroge 57.1 7.8 0.00027 41.5 4.3 94 133-242 148-247 (330)
469 4dup_A Quinone oxidoreductase; 56.7 5.7 0.00019 43.2 3.2 97 131-242 164-265 (353)
470 4ft4_B DNA (cytosine-5)-methyl 55.9 22 0.00077 42.9 8.6 46 133-178 210-261 (784)
471 1xa0_A Putative NADPH dependen 55.8 7.8 0.00027 41.4 4.1 95 133-242 147-246 (328)
472 3gaz_A Alcohol dehydrogenase s 55.6 5.7 0.0002 42.9 3.0 94 131-242 147-246 (343)
473 3swr_A DNA (cytosine-5)-methyl 55.3 16 0.00054 45.5 7.1 46 134-179 539-585 (1002)
474 2cdc_A Glucose dehydrogenase g 55.0 20 0.00068 38.9 7.3 88 135-242 181-278 (366)
475 1wly_A CAAR, 2-haloacrylate re 54.1 19 0.00065 38.4 6.8 95 131-242 142-244 (333)
476 1yqd_A Sinapyl alcohol dehydro 53.3 9.5 0.00033 41.6 4.3 94 134-242 187-282 (366)
477 3tqh_A Quinone oxidoreductase; 53.2 25 0.00086 37.3 7.6 93 131-241 149-244 (321)
478 3ggo_A Prephenate dehydrogenas 52.8 70 0.0024 34.0 11.0 89 135-238 33-124 (314)
479 3ius_A Uncharacterized conserv 52.7 92 0.0031 31.7 11.7 67 136-216 6-76 (286)
480 2zwa_A Leucine carboxyl methyl 50.2 69 0.0024 38.0 11.5 109 134-244 107-256 (695)
481 4a0s_A Octenoyl-COA reductase/ 48.8 33 0.0011 38.3 8.0 97 131-242 217-336 (447)
482 2cf5_A Atccad5, CAD, cinnamyl 48.2 9.5 0.00032 41.4 3.2 94 134-242 180-275 (357)
483 2g1u_A Hypothetical protein TM 47.5 33 0.0011 32.1 6.6 97 133-242 17-118 (155)
484 2odr_B Phosphoseryl-tRNA synth 46.9 25 0.00086 41.2 6.5 25 828-852 333-357 (648)
485 1g60_A Adenine-specific methyl 46.4 9.5 0.00032 39.6 2.8 57 186-242 6-74 (260)
486 2odr_A Phosphoseryl-tRNA synth 46.4 26 0.00088 41.2 6.5 25 828-852 333-357 (665)
487 3pco_B Phenylalanyl-tRNA synth 46.2 22 0.00077 43.1 6.3 111 354-465 494-628 (795)
488 2odr_D Phosphoseryl-tRNA synth 45.7 27 0.00092 41.1 6.5 25 828-852 333-357 (685)
489 3pxx_A Carveol dehydrogenase; 45.2 66 0.0023 33.0 9.2 107 134-242 9-153 (287)
490 2odr_C Phosphoseryl-tRNA synth 45.0 28 0.00095 41.1 6.5 25 828-852 333-357 (701)
491 3gqv_A Enoyl reductase; medium 42.9 9.7 0.00033 41.6 2.3 95 133-242 163-263 (371)
492 3d1l_A Putative NADP oxidoredu 42.7 90 0.0031 31.8 9.7 90 135-242 10-101 (266)
493 3grk_A Enoyl-(acyl-carrier-pro 42.5 1.2E+02 0.0041 31.5 10.8 107 134-243 30-170 (293)
494 2f1k_A Prephenate dehydrogenas 42.4 95 0.0032 31.8 9.8 85 136-238 1-87 (279)
495 1eg2_A Modification methylase 39.8 14 0.00047 39.8 2.8 57 186-242 40-106 (319)
496 4eso_A Putative oxidoreductase 39.2 65 0.0022 32.7 7.9 104 134-242 7-138 (255)
497 2g5c_A Prephenate dehydrogenas 36.8 1.7E+02 0.0057 29.9 10.7 88 137-240 3-94 (281)
498 1zcj_A Peroxisomal bifunctiona 36.6 1.1E+02 0.0037 34.5 9.7 95 135-239 37-147 (463)
499 3mog_A Probable 3-hydroxybutyr 36.0 86 0.0029 35.6 8.8 95 136-240 6-118 (483)
500 3ek2_A Enoyl-(acyl-carrier-pro 35.9 1.1E+02 0.0038 30.8 9.0 107 133-242 12-153 (271)
No 1
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2e-125 Score=1103.68 Aligned_cols=486 Identities=47% Similarity=0.812 Sum_probs=444.7
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+++||.++++++++++. ++|+.++++..+++++|++|||||||++.++++|++||+|++++|+||.+++||+||+||+
T Consensus 97 tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPi 175 (617)
T 4ah6_A 97 TGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT 175 (617)
T ss_dssp TTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCS
T ss_pred CCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCe
Confidence 357999999999999996 9999988777788999999999999999999999999999999999994268999999999
Q ss_pred eccCCCCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHH
Q psy8372 376 LFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 376 l~~~~~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm 455 (883)
|++++|+||++|.++++..+.+|||+||||+|||++|++|++|||||+||||+|+++++|+|||||||+||+|.|++|+|
T Consensus 176 L~~st~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m 255 (617)
T 4ah6_A 176 LFKRTPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQ 255 (617)
T ss_dssp SBCCCCSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHH
T ss_pred eccCCCCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGP 531 (883)
Q Consensus 456 ~~~E~li~~i~~~----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 531 (883)
+++|+||+++++. +..||+||||.|||.+||+||||+||+++|.| +++.
T Consensus 256 ~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~D-Vtdi-------------------------- 308 (617)
T 4ah6_A 256 SLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIID-ISDV-------------------------- 308 (617)
T ss_dssp HHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEE-CGGG--------------------------
T ss_pred HHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccccc-HHHH--------------------------
Confidence 9999999999985 57899999999999999999999999999999 8877
Q ss_pred cccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccc
Q psy8372 532 SFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSET 611 (883)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (883)
|. +++|. +|+.++ ..++|.|+|
T Consensus 309 -f~-----------------------------~s~Fk--------VF~~~~----~~~~g~VkA---------------- 330 (617)
T 4ah6_A 309 -FR-----------------------------NTEIG--------FLQDAL----SKPHGTVKA---------------- 330 (617)
T ss_dssp -GS-----------------------------SCCCH--------HHHHHT----TSTTEEEEE----------------
T ss_pred -hc-----------------------------cCCch--------hHhhhh----hcCCCeEEE----------------
Confidence 43 33342 232222 235778887
Q ss_pred cCCCccceeeeecCCcc-ccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEE
Q psy8372 612 KSSGEDVYRILILPKDL-DSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLI 690 (883)
Q Consensus 612 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 690 (883)
|++|+++ .++|+.+++|.++++.++|.+++.++.++|+. |.+++.|++++++.++|.+.+++++||+|
T Consensus 331 ----------I~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~-~~~~I~Kflsee~~~~L~e~l~a~~GDlI 399 (617)
T 4ah6_A 331 ----------ICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRN-WNSPVANFIMESQRLELIRLMETQEEDVV 399 (617)
T ss_dssp ----------EEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTT-SSCTTHHHHHHHHHHHHHHHHTCCSSEEE
T ss_pred ----------EEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCc-cccchhhhcCHHHHHHHHHHhCCCCCCEE
Confidence 8999877 47999999999999987787777777766654 99999999999999999999999999999
Q ss_pred EEecCCchhhHhHHHHHHHHhhhhcccccCC---cccCCCCCccEEEEEecCCCCCC-CC-CCccccccCcCCCCCCChh
Q psy8372 691 VVSWGKQEDVLSLLGMIRSESHKIKVKNTLP---LEFDNPKSFSIFWVVDFPLFLPS-DS-GTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 691 ~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~---~~l~~~~~~~f~wV~dfPl~~~~-~~-~~~~~~h~PFt~p~~~d~~ 765 (883)
+|.+|+...++++||+||.+++ +.+. ..+.+++.|+|+||||||||++. |+ |+|.|+|||||||+++|.+
T Consensus 400 ff~Ag~~~~v~~~LG~LR~~l~-----~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~ 474 (617)
T 4ah6_A 400 LLTAGEHNKACSLLGKLRLECA-----DLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIH 474 (617)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHH-----HHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTST
T ss_pred EEecCChHHHHHHHHHHHHHHH-----HHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHH
Confidence 9999988889999999999999 4331 13788889999999999999644 44 9999999999999999999
Q ss_pred hhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHH-hCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHh
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILH-FLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILC 844 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~-~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~ 844 (883)
++.+||.+++|++||||+||+||+|||+||||+++|+++|+ .+|++++.|+|||+||+||+|||||||+|||||||+|+
T Consensus 475 ~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~ 554 (617)
T 4ah6_A 475 LLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVT 554 (617)
T ss_dssp HHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHH
T ss_pred HhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHc
Confidence 99999999999999999999999999999999999999998 89999889999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 845 GTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 845 ~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
|++||||||+||||.+|.|||++||+.|+++||+||||+
T Consensus 555 g~~~irdvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~ 593 (617)
T 4ah6_A 555 GSPSIRDVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIR 593 (617)
T ss_dssp TCSSGGGSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC--
T ss_pred CCCchheEEecCCCCCccccccCCCCCCCHHHHHhcCee
Confidence 999999999999999999999999999999999999985
No 2
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=4.1e-111 Score=986.94 Aligned_cols=472 Identities=42% Similarity=0.714 Sum_probs=420.7
Q ss_pred cceEEEEeeeeeecccCCCCCccccc------cCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKN------YNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVE 370 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~------~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~E 370 (883)
+++||.++++++++++. ++|+.+.+ +..+++++|++|||||||++.++++|++||+|++++|+|| +++||+|
T Consensus 88 ge~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl-~~~gF~E 165 (580)
T 1l0w_A 88 GRVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFL-DREGFVQ 165 (580)
T ss_dssp TTEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEE
T ss_pred ccEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHH-HhCCcEE
Confidence 57899999999999995 78888865 5678899999999999999999999999999999999999 6899999
Q ss_pred EcCCeeccCCCCCCccceeccCC-CCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 371 VETPTLFKRTPGGAREFVVPTHE-PNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 371 V~TP~l~~~~~~ga~~f~v~~~~-~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+||+|++++++||++|.|+++. .+.+|+|+||||+|||++|++|++||||||||||||+++++|||||||||+||+|+
T Consensus 166 VeTPiL~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~ 245 (580)
T 1l0w_A 166 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFV 245 (580)
T ss_dssp CCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESC
T ss_pred EeCCEEecCCCCCCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCC
Confidence 99999999999999999999873 46777899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8372 450 TRDDVMRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPG 524 (883)
Q Consensus 450 ~~~dvm~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 524 (883)
|++|+|+++|+||+++++. ++.||+||||.|||++||+|+||+||++++.+ +++.
T Consensus 246 d~~dvm~~~E~li~~i~~~v~~~~~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d-~~~~------------------- 305 (580)
T 1l0w_A 246 EVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKE-VGPL------------------- 305 (580)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEE-CGGG-------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEHHHHHHHhcCCCcccccccchhh-hhhh-------------------
Confidence 9999999999999999985 56799999999999999999999999999988 6554
Q ss_pred CCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeecccccc
Q psy8372 525 FDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNF 604 (883)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (883)
+. .+++. .+... - .|++
T Consensus 306 --------~~-----------------------------~~~~~--------~~~~~--------~-~v~~--------- 322 (580)
T 1l0w_A 306 --------FR-----------------------------QSGFR--------VFQEA--------E-SVKA--------- 322 (580)
T ss_dssp --------GS-----------------------------SSCCT--------HHHHS--------S-EEEE---------
T ss_pred --------hh-----------------------------ccccc--------ccccc--------c-eeEE---------
Confidence 21 11121 11110 0 2333
Q ss_pred ccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCC
Q psy8372 605 RSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENL 684 (883)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (883)
|.+|+ .++++.++.+.+++++ ++.+++.++++.++. |.+++.+++++ +..++.+++++
T Consensus 323 -----------------i~~~~--~~~r~~~~~l~~~~~~-~g~~~~~~~~~~~~~-~~~~~~k~l~~-~~~~l~~~~~~ 380 (580)
T 1l0w_A 323 -----------------LALPK--ALSRKEVAELEEVAKR-HKAQGLAWARVEEGG-FSGGVAKFLEP-VREALLQATEA 380 (580)
T ss_dssp -----------------EEESS--CCCHHHHHHHHHHHHH-TSCSCCEEEEEETTE-EESTTHHHHGG-GHHHHHHHHCC
T ss_pred -----------------EeccC--ccCHHHHHHHHHHHHH-cCCCcceEEEecCcc-ccchhhhhhhH-HHHHHHHHhCC
Confidence 77776 5899999999999986 566677777765432 67778888887 77899999999
Q ss_pred CCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCC-CCccccccCcCCCCCCC
Q psy8372 685 EEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDS-GTLESAHHPFTQPHPED 763 (883)
Q Consensus 685 ~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~-~~~~~~h~PFt~p~~~d 763 (883)
+.||++++.++....+++.||+||.+++ +.+ ++.++ .++|+||||||+++++++ ++|.++|||||||+++|
T Consensus 381 ~~gd~~~~~~~~~~~~~~~Lg~lr~~l~-----~~~--~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~d 452 (580)
T 1l0w_A 381 RPGDTLLFVAGPRKVAATALGAVRLRAA-----DLL--GLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPED 452 (580)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHHHHHHH-----HHT--TCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTT
T ss_pred CcCceEEEecCccchhhhhHHHHHHHHH-----HHh--ccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchh
Confidence 9999999999988889999999999999 433 45555 678999999999998776 99999999999999999
Q ss_pred hhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHH
Q psy8372 764 EHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRL 839 (883)
Q Consensus 764 ~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRl 839 (883)
...+.+||.++++++||||+||+||+|||+|+|||++|+++|+.+|+++++ |+|||+||+||+|||||||||||||
T Consensus 453 l~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRL 532 (580)
T 1l0w_A 453 LPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRL 532 (580)
T ss_dssp TTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHH
T ss_pred hhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHH
Confidence 888888997788999999999999999999999999999999999998875 8999999999999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 840 MSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 840 vm~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
||+|+|++||||||+|||+++|.|+|++||+.|+++||+||||+
T Consensus 533 vMll~g~~sIRdVi~FP~~~~~~~~~~~aP~~v~~~ql~~~~~~ 576 (580)
T 1l0w_A 533 LALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLM 576 (580)
T ss_dssp HHHHHTCSSGGGGSSSCCCTTSCBTTTTBSEECCHHHHHHHTEE
T ss_pred HHHHcCCCcHHeEecCCCCCCccccccCCCCcCCHHHHHhhcce
Confidence 99999999999999999999999999999999999999999984
No 3
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=2.5e-110 Score=983.58 Aligned_cols=480 Identities=35% Similarity=0.616 Sum_probs=425.6
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
.+++||.++++++++++. ++|+.+.+ ..++++|++|||||||++.++++|++||+|++++|+|| +++||+||+||+
T Consensus 89 ~geiEl~~~~i~vl~~a~-~lP~~~~~--~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl-~~~gFlEVeTPi 164 (585)
T 1c0a_A 89 TGEIEVLASSLTIINRAD-VLPLDSNH--VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFM-DDHGFLDIETPM 164 (585)
T ss_dssp TTTEEEEEEEEEEEECCC-SCSSCTTS--CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCS
T ss_pred CccEEEEEeEEEEEeccC-CCCCCccc--cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEeCCE
Confidence 357899999999999995 78888765 57899999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCccceeccC-CCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 376 LFKRTPGGAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 376 l~~~~~~ga~~f~v~~~-~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
|++++|+||++|.|+++ ..+.+|+|+||||+|||++|++|++||||||||||||+++++|||||||||+||+|+|++|+
T Consensus 165 L~~s~~eGAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dv 244 (585)
T 1c0a_A 165 LTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQV 244 (585)
T ss_dssp SBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHH
T ss_pred EecCCCCCCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHH
Confidence 99999999999999987 34677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-----CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI-----PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRR 529 (883)
Q Consensus 455 m~~~E~li~~i~~~-----~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 529 (883)
|+++|+||+++++. ++. |+||||.|||++||+|+||+||++++.+ +++.
T Consensus 245 m~~~E~li~~i~~~v~~~~~~~-f~r~ty~ea~~~~g~dkpd~r~~~~l~d-~~~~------------------------ 298 (585)
T 1c0a_A 245 REVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTD-VADL------------------------ 298 (585)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCS-CCEEEHHHHHHHHSCSSCCTTSCCCEEE-CHHH------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCccc-cceeeHHHHHHHhcCCCccccCCceeEE-ehhh------------------------
Confidence 99999999999976 333 9999999999999999999999999988 5544
Q ss_pred CCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcc
Q psy8372 530 GPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRS 609 (883)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (883)
|. .++| ..++..+ .+++|.+.+
T Consensus 299 ---~~-----------------------------~~~f--------~~~~~~~----~~~~~~~~~-------------- 320 (585)
T 1c0a_A 299 ---LK-----------------------------SVEF--------AVFAGPA----NDPKGRVAA-------------- 320 (585)
T ss_dssp ---HT-----------------------------TCSC--------HHHHHHH----HCTTEEEEE--------------
T ss_pred ---hc-----------------------------cCCc--------ceehhhh----hccCceEEE--------------
Confidence 11 1222 1122222 233555655
Q ss_pred cccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCc----ccccccccccCChhhHHHHHHHcCCC
Q psy8372 610 ETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDS----LEWTNKLTKILPDLNVEEFRNKENLE 685 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (883)
|.+|.++.++++.++++.++++++ +.+++.++++.++ ..|.+++.+++++++..+|.++++++
T Consensus 321 ------------i~~~~~~~~~r~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~ 387 (585)
T 1c0a_A 321 ------------LRVPGGASLTRKQIDEYGNFVKIY-GAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQ 387 (585)
T ss_dssp ------------EEETTGGGCCHHHHHHHHHHHHHT-TCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCC
T ss_pred ------------EEccccCccCHhhHHHHHHHHHHc-CCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCCC
Confidence 777776668999999999999874 5566667776552 23788999999999999999999999
Q ss_pred CCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChh
Q psy8372 686 EGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEH 765 (883)
Q Consensus 686 ~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~ 765 (883)
.||++++.++....+++.||+||.+++ +.+ ++.+++.++|+||||||+++..++++|.++|||||||+++|..
T Consensus 388 ~~d~~~~~~~~~~~~~~~lG~lr~~l~-----~~~--~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~ 460 (585)
T 1c0a_A 388 DGDMIFFGADNKKIVADAMGALRLKVG-----KDL--GLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAA 460 (585)
T ss_dssp TTCEEEEEEEEHHHHHHHHHHHHHHHH-----HHT--TCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHH
T ss_pred cCcEEEEecCcccchhhhhHHHHHHHH-----HHh--CcccccccccEEEEeCCccccccccccccccCCccCCCchhhh
Confidence 999999999888888999999999999 444 4666667789999999999833349999999999999999998
Q ss_pred hhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCccc----HHHHHHHhhcCCCCCcceeccHHHHHH
Q psy8372 766 LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSS----LQHMIQAFKYGCPPHGGIALGIDRLMS 841 (883)
Q Consensus 766 ~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~----~~~~l~a~~~G~pPhgG~glGldRlvm 841 (883)
.+.+||.++++++||||+||+||+|||+|+|||++|+++|+.+|+++++ |+|||+||+||+|||||||||||||||
T Consensus 461 ~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvm 540 (585)
T 1c0a_A 461 ELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM 540 (585)
T ss_dssp HHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHH
T ss_pred hhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHH
Confidence 8888998788999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCCCCCCCCCCCCCChhhhhcccCC
Q psy8372 842 ILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNLK 883 (883)
Q Consensus 842 ~l~~~~sIRdvi~FPk~~~~~~~~~~~p~~~~~~~~~~~~~~ 883 (883)
+|+|++||||||+|||+++|.|+|++||+.|+++||+||||+
T Consensus 541 lltg~~sIRdVi~FPr~~~~~~~~~~ap~~v~~~ql~~~~~~ 582 (585)
T 1c0a_A 541 LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582 (585)
T ss_dssp HHHTCSCGGGGSSSCCCTTSCBTTTTBSCCCCHHHHHHTTCC
T ss_pred HHcCCCcHHheecCCCCCCccccccCCCCcCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999985
No 4
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=4.2e-80 Score=713.80 Aligned_cols=343 Identities=25% Similarity=0.433 Sum_probs=281.4
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|.. .++..++++|+++|||||| ++.++++|++||+|++++|+|| +++||+||+||+|
T Consensus 134 e~ei~~~~i~vl~~a~~plP~k--~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~-~~~gFlEVeTPiL 210 (504)
T 1e1o_A 134 ELSIHCTELRLLTKALRPLPDK--FHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVETPMM 210 (504)
T ss_dssp CEEEEEEEEEEEECCSSCCCC---------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTTTCEECCCCSE
T ss_pred eEEEEEEEEEEecccCCCCCcc--ccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCeE
Confidence 5789999999999997788843 3445678999999999996 8999999999999999999999 7899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ ++++|| ++|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 211 ~-~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dl 289 (504)
T 1e1o_A 211 Q-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDL 289 (504)
T ss_dssp E-SSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHH
T ss_pred E-ecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHH
Confidence 7 567765 6799987777899999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+.| .| +.+ .
T Consensus 290 m~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity~eAi~~~~~d-~d------~~~----~-------------- 344 (504)
T 1e1o_A 290 IELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE-TD------MAD----L-------------- 344 (504)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTT-CC------GGG----G--------------
T ss_pred HHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeHHHHHHHHcCC-CC------ccc----c--------------
Confidence 99999999999864 45799999999999999763 11 000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
T Consensus 345 -------------------------------------------------------------------------------- 344 (504)
T 1e1o_A 345 -------------------------------------------------------------------------------- 344 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
+.++.+.+++++.
T Consensus 345 ---------------------------------~~~~~~~~~~~~~---------------------------------- 357 (504)
T 1e1o_A 345 ---------------------------------DNFDAAKALAESI---------------------------------- 357 (504)
T ss_dssp ---------------------------------GSHHHHHHHHHHT----------------------------------
T ss_pred ---------------------------------CCHHHHHHHHHHc----------------------------------
Confidence 0112233333321
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
|++.. ..+.+|.++.+++ ++.+++.+.+ |+||+|||++ .||||++
T Consensus 358 ---g~~~~------------~~~~~g~l~~~~~----~~~ve~~~~~-----p~fV~dyP~~-----------~~pf~~~ 402 (504)
T 1e1o_A 358 ---GITVE------------KSWGLGRIVTEIF----DEVAEAHLIQ-----PTFITEYPAE-----------VSPLARR 402 (504)
T ss_dssp ---TCCCC------------TTCCHHHHHHHHH----HHHTGGGCCS-----CEEEECCBGG-----------GCTTBCB
T ss_pred ---CCCCC------------CCcCHhHHHHHHH----HHHhhccCCC-----eEEEECCCcc-----------cCcCcCC
Confidence 11100 0124677887777 3455555554 4999999997 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC----C-CCccc---HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL----N-IETSS---LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~----~-~~~~~---~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||++||+||+|||+|+|||++|+++|+.. + .+++. ++|||+|++||||||||
T Consensus 403 ~~~dp~~---------~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 473 (504)
T 1e1o_A 403 NDVNPEI---------TDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAG 473 (504)
T ss_dssp CSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEE
T ss_pred CCCCCCc---------eEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCcee
Confidence 9887654 589999999999999999999999999999542 1 23333 49999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||+|||++||||||+|||+++
T Consensus 474 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 502 (504)
T 1e1o_A 474 LGIGIDRMIMLFTNSHTIRDVILFPAMRP 502 (504)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999976
No 5
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.5e-78 Score=699.95 Aligned_cols=342 Identities=25% Similarity=0.418 Sum_probs=281.6
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|.. .++..++++|+++|||||| ++.+++++++||+|++++|+|| +++||+||+||+|
T Consensus 125 e~ei~~~~i~vl~~~~~plP~k--~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff-~~~gF~EVeTPiL 201 (493)
T 3a74_A 125 ELSIKVSSYEFLTKALRPLPEK--YHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYL-DSHGYLEVETPMM 201 (493)
T ss_dssp CEEEEEEEEEEEECCSSCCCCC-------CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred cEEEEEEEEEEcccccCCCCcc--ccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHH-HhCCeEEEECCeE
Confidence 5789999999999998788843 3445679999999999996 8999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
++ +++|+ +.|.++++..+..+||+||||+|+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 202 ~~-~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dl 280 (493)
T 3a74_A 202 HA-VAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDI 280 (493)
T ss_dssp ES-SCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHH
T ss_pred Ee-cCCCCcccceEecccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHH
Confidence 84 56664 5799976666899999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+.. + + | ..
T Consensus 281 m~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~eai~~~~~~-----------d-~-----~-----~~---- 334 (493)
T 3a74_A 281 MKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGV-----------D-F-----W-----RQ---- 334 (493)
T ss_dssp HHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCC-----------C-T-----T-----SC----
T ss_pred HHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHHHHHHHHhCC-----------C-C-----c-----cc----
Confidence 99999999999864 45799999999999998751 1 0 0 00
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
+
T Consensus 335 -------------~------------------------------------------------------------------ 335 (493)
T 3a74_A 335 -------------M------------------------------------------------------------------ 335 (493)
T ss_dssp -------------C------------------------------------------------------------------
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
..+++.+++++
T Consensus 336 ----------------------------------~~~~~~~~~~~----------------------------------- 346 (493)
T 3a74_A 336 ----------------------------------SDEEARELAKE----------------------------------- 346 (493)
T ss_dssp ----------------------------------CHHHHHHHHHH-----------------------------------
T ss_pred ----------------------------------CHHHHHHHHHH-----------------------------------
Confidence 01223333332
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
.|++.. ..+.+|.++.+++ ++.+++.+.+ ++||+|||+. .||||++
T Consensus 347 --~g~~~~------------~~~~~g~l~~~~~----~~~ve~~~~~-----p~fv~dyP~~-----------~~pf~~~ 392 (493)
T 3a74_A 347 --HGVEVA------------PHMTFGHIVNEFF----EQKVEDKLIQ-----PTFIYGHPVE-----------ISPLAKK 392 (493)
T ss_dssp --TTCCCC------------TTCCHHHHHHHHH----HHHTGGGCCS-----CEEEECCBGG-----------GCTTBCB
T ss_pred --cCCCCC------------CCcChhHHHHHHH----HHHhhcccCC-----cEEEECCCcc-----------cCCccCc
Confidence 111100 0124677877777 3455555555 4999999997 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC----C-CCccc---HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL----N-IETSS---LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~----~-~~~~~---~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||++||+||+|||+|+|||++|+++|+.. + .+++. ++|||+|++||+|||||
T Consensus 393 ~~~dp~~---------~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 393 NPDDPRF---------TDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp CSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred CCCCCCe---------EEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 9887654 589999999999999999999999999999542 1 23333 49999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||||||||+|||++||||||+|||+++
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999875
No 6
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.7e-77 Score=682.02 Aligned_cols=326 Identities=29% Similarity=0.548 Sum_probs=275.0
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+.+++....++++|+++||||+|++.++++|++||+|++++|+|| +++||+||+||+|+
T Consensus 87 ~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~-~~~gF~EVeTPiL~ 165 (438)
T 3nem_A 87 GFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF-HENGFIEIHTPKII 165 (438)
T ss_dssp SEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEE
T ss_pred cEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCcEEEeCCEEe
Confidence 58899999999999988999988654457899999999999999999999999999999999999 68999999999999
Q ss_pred cCCCCC-CccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCC-HHHH
Q psy8372 378 KRTPGG-AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDV 454 (883)
Q Consensus 378 ~~~~~g-a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~-~~dv 454 (883)
+++++| +..|++.++ +..+||+||||+|||++|++|++||||||||||+|+++++|| |||||||+||+|+| ++|+
T Consensus 166 ~~~~eg~~~~f~~~~~--~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~ 243 (438)
T 3nem_A 166 ATATEGGTELFPMKYF--EEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEV 243 (438)
T ss_dssp SSCSSCSSSCCEEEET--TEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHH
T ss_pred cCCCCCCccceeEeeC--CccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHH
Confidence 887655 456888765 688999999999999999999999999999999999998776 89999999999999 9999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRL 516 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~ 516 (883)
|+++|+||+++++. ++.||+||||.||++.+.... + .
T Consensus 244 m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g------------~--~----------- 298 (438)
T 3nem_A 244 MSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLG------------K--E----------- 298 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTT------------C--C-----------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcC------------C--C-----------
Confidence 99999999999864 246899999999987632100 0 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEe
Q psy8372 517 PRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLF 596 (883)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (883)
+. | +.++
T Consensus 299 ----------------~~------~----------------------~~dl----------------------------- 305 (438)
T 3nem_A 299 ----------------IP------W----------------------GEDI----------------------------- 305 (438)
T ss_dssp ----------------CC------T----------------------TSCC-----------------------------
T ss_pred ----------------CC------C----------------------CCCC-----------------------------
Confidence 00 0 0000
Q ss_pred eeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHH
Q psy8372 597 QIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVE 676 (883)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (883)
+
T Consensus 306 ----------------------------------~--------------------------------------------- 306 (438)
T 3nem_A 306 ----------------------------------D--------------------------------------------- 306 (438)
T ss_dssp ----------------------------------C---------------------------------------------
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc
Q psy8372 677 EFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF 756 (883)
Q Consensus 677 ~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF 756 (883)
......|++...+.. .. .++||+|||.. ..||
T Consensus 307 ---------------------~~~e~~l~~~~~~~~-----------~~-----~p~fi~~yP~~-----------~~pf 338 (438)
T 3nem_A 307 ---------------------TEGERLLGKYMMENE-----------NA-----PLYFLYQYPSE-----------AKPF 338 (438)
T ss_dssp ---------------------HHHHHHHHHHHHHHH-----------CC-----SEEEEESCBGG-----------GSCT
T ss_pred ---------------------cHHHHHHHHHhhhhc-----------CC-----CCEEEECCchh-----------hCcc
Confidence 001122333221111 11 46999999987 7999
Q ss_pred -CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceecc
Q psy8372 757 -TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALG 835 (883)
Q Consensus 757 -t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glG 835 (883)
++++++|+.+ +++|||+++|.||+|||+|+|||++|+++|+..|++++.++|||+|++||||||||||||
T Consensus 339 y~k~~~~~p~~---------~~rfdL~~~G~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlG 409 (438)
T 3nem_A 339 YIMKYDNKPEI---------CRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLG 409 (438)
T ss_dssp TBCBCTTSTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEE
T ss_pred ccccCCCCCCc---------eEEEEEEECCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEh
Confidence 8888877655 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCCCC
Q psy8372 836 IDRLMSILCGTQSIRDVIAFPKGFG 860 (883)
Q Consensus 836 ldRlvm~l~~~~sIRdvi~FPk~~~ 860 (883)
||||+|+|+|++||||||+|||+..
T Consensus 410 idRLvm~l~g~~~Irdvi~FPr~~~ 434 (438)
T 3nem_A 410 AERLIKQMLDLPNIREVILFPRDRR 434 (438)
T ss_dssp HHHHHHHHTTCSCGGGGSSSCCCSS
T ss_pred HHHHHHHHhCCCcHHHcccCCCCcc
Confidence 9999999999999999999999854
No 7
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=3.6e-77 Score=688.38 Aligned_cols=348 Identities=26% Similarity=0.431 Sum_probs=282.0
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
++||.++++++++++..++|+.. ++..++++|+++|||||| ++.++++|++||+|+++||+|| +++||+||+||+|
T Consensus 155 elel~~~~i~vLs~a~~plP~k~--~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff-~~~gFlEVeTPiL 231 (529)
T 4ex5_A 155 ELSVKCTQLRLLAKALRPLPDKF--HGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFM-GDADFMEVETPML 231 (529)
T ss_dssp CEEEEEEEEEEEECCSSCCCC--------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred cEEEEEEEEEEEecCCCCCCccc--cCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCCee
Confidence 57899999999999987888754 345678999999999998 7999999999999999999999 6899999999999
Q ss_pred ccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHH
Q psy8372 377 FKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dv 454 (883)
+ +++||| ++|.+.++..+..+||+||||||+|++|++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 232 ~-~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dl 310 (529)
T 4ex5_A 232 H-PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWL 310 (529)
T ss_dssp E-SSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHH
T ss_pred e-ccCCCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHH
Confidence 7 567877 5798877777889999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhcc---------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI---------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRR 519 (883)
Q Consensus 455 m~~~E~li~~i~~~---------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~ 519 (883)
|+++|+||+++++. ++.||+||||.|||++|+... | ..+ +
T Consensus 311 m~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~eAi~~~~~~~-~------~~~-~----------------- 365 (529)
T 4ex5_A 311 MDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSY-T------DGQ-L----------------- 365 (529)
T ss_dssp HHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHHHHHHHHCTTS-C------HHH-H-----------------
T ss_pred HHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHHHHHHHHhCCC-C------hhh-c-----------------
Confidence 99999999999864 467999999999999987521 0 000 0
Q ss_pred CCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeec
Q psy8372 520 AGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIK 599 (883)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (883)
T Consensus 366 -------------------------------------------------------------------------------- 365 (529)
T 4ex5_A 366 -------------------------------------------------------------------------------- 365 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHH
Q psy8372 600 NVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFR 679 (883)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (883)
...+.+.+++++.
T Consensus 366 ---------------------------------~~~~~l~~~~~~~---------------------------------- 378 (529)
T 4ex5_A 366 ---------------------------------SDDAFLRSELKRL---------------------------------- 378 (529)
T ss_dssp ---------------------------------TCHHHHHHHHHHT----------------------------------
T ss_pred ---------------------------------CCHHHHHHHHHHc----------------------------------
Confidence 0011223333321
Q ss_pred HHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCC
Q psy8372 680 NKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQP 759 (883)
Q Consensus 680 ~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p 759 (883)
|++..+ .....+.+|.+..+++ +..+|+.+.+| +||+|||.. ..||+++
T Consensus 379 ---g~~~~~--------~~~~~~~~g~l~~e~~----~~~vE~~l~~P-----~FI~dyP~~-----------~splak~ 427 (529)
T 4ex5_A 379 ---GVDVTQ--------PAFLNAGIGALQLALF----EETAEAQLWEP-----TFIIDYPIE-----------VSPLARE 427 (529)
T ss_dssp ---TCCTTS--------GGGTTCCHHHHHHHHH----HHHTGGGCCSC-----EEEEEEEGG-----------GCTTBCB
T ss_pred ---CCCCCC--------cccCCCCHHHHHHHHH----HHHhccccCCC-----EEEECCchh-----------hCCCccc
Confidence 111000 0000123566666665 35556667666 899999987 7999999
Q ss_pred CCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHh------CCCCccc--HHHHHHHhhcCCCCCcc
Q psy8372 760 HPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHF------LNIETSS--LQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 760 ~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~------~~~~~~~--~~~~l~a~~~G~pPhgG 831 (883)
+++|+.+ +++|||+++|.||+|||+|+|||++|+++|+. .|-+++. .+|||+|++||||||||
T Consensus 428 ~~~~p~~---------~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG 498 (529)
T 4ex5_A 428 SDTVAGI---------TERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGG 498 (529)
T ss_dssp CSSSTTE---------EEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEE
T ss_pred CCCCCCc---------eEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcE
Confidence 9888765 48999999999999999999999999999943 3333333 38999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||||||||||+|||++||||||+||+++..
T Consensus 499 ~GlGiDRLvMlltg~~~IRdVi~FP~~r~~ 528 (529)
T 4ex5_A 499 CGIGIDRLVMLLTDSPTIRDVLLFPHLRRE 528 (529)
T ss_dssp EEEEHHHHHHHHHTCSSGGGGCSSCCCCCC
T ss_pred EEEeHHHHHHHHcCCCcHHHeecCCccCCC
Confidence 999999999999999999999999998753
No 8
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=2.5e-77 Score=678.96 Aligned_cols=325 Identities=30% Similarity=0.458 Sum_probs=224.9
Q ss_pred cceEEEEeeeeeecccCCCCCccccc-cCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKN-YNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~-~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
+++||.++++++++++..++|+++++ ....++++|+++||||||++.+++++++|++|++++|+|| .++||+||+||+
T Consensus 73 ~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f-~~~gF~EV~TPi 151 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYL-DRQDFTEIFTPK 151 (422)
T ss_dssp TSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC-
T ss_pred ccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCE
Confidence 36899999999999998899987754 3456799999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHH
Q psy8372 376 LFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRD 452 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~ 452 (883)
|+.++++|+.. |.+++. +..+||+||||+|+|+++ +|++||||||||||+|+++++|| |||||+|+|++|. |++
T Consensus 152 l~~~~~e~~~~~f~~~~~--g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~ 228 (422)
T 1n9w_A 152 VVRAGAEGGSGLFGVDYF--EKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEE 228 (422)
T ss_dssp -----------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHH
T ss_pred EEEeCCCCCceeEEEeeC--CCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHH
Confidence 99888877765 888754 677899999999999977 77999999999999999998766 8999999999999 999
Q ss_pred HHHHHHHHHHHHHhcc---------------CC---CCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI---------------PT---RTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPT 514 (883)
Q Consensus 453 dvm~~~E~li~~i~~~---------------~~---~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~ 514 (883)
|+|+++|+|++++++. +. .||+||||.||++.|.... + . .
T Consensus 229 dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~----------~----~-~------- 286 (422)
T 1n9w_A 229 DLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL----------G----Y-P------- 286 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS----------C----C-C-------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC----------C----c-c-------
Confidence 9999999999999863 22 6899999999998863210 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeE
Q psy8372 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTV 594 (883)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (883)
| +.++
T Consensus 287 --------------------------~----------------------~~dl--------------------------- 291 (422)
T 1n9w_A 287 --------------------------V----------------------GQDL--------------------------- 291 (422)
T ss_dssp --------------------------C----------------------CSSC---------------------------
T ss_pred --------------------------c----------------------cccc---------------------------
Confidence 0 0000
Q ss_pred EeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhh
Q psy8372 595 LFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLN 674 (883)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (883)
..
T Consensus 292 ------------------------------------~~------------------------------------------ 293 (422)
T 1n9w_A 292 ------------------------------------SE------------------------------------------ 293 (422)
T ss_dssp ------------------------------------CH------------------------------------------
T ss_pred ------------------------------------Cc------------------------------------------
Confidence 00
Q ss_pred HHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccccc
Q psy8372 675 VEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHH 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~ 754 (883)
.....|++... ..+ . .+|+||+|||+. ||
T Consensus 294 ------------------------~~e~~l~~~~~--------~~~----~----~~p~fv~d~P~~-----------~~ 322 (422)
T 1n9w_A 294 ------------------------EAERLLGEYAK--------ERW----G----SDWLFVTRYPRS-----------VR 322 (422)
T ss_dssp ------------------------HHHHHHHHHHH--------HHT----C----CSEEEEECCBGG-----------GS
T ss_pred ------------------------HHHHHHHHHHH--------hhh----C----CceEEEECCChh-----------hC
Confidence 00011221111 111 1 147999999998 99
Q ss_pred CcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceec
Q psy8372 755 PFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIAL 834 (883)
Q Consensus 755 PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~gl 834 (883)
||+++..+| .+ +++|||++||+||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+||||||||
T Consensus 323 pf~~~~~~d-~~---------~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~gl 392 (422)
T 1n9w_A 323 PFYTYPEED-GT---------TRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAI 392 (422)
T ss_dssp CTTBCBCTT-SB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEE
T ss_pred cCcCCCCCC-CE---------EEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEE
Confidence 999887665 22 69999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 835 GIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 835 GldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||||||+|+|++||||||+|||+++-
T Consensus 393 GiDRLvm~l~g~~~Irdvi~FPr~~~~ 419 (422)
T 1n9w_A 393 GAERLTQKLLGLPNVRYARAFPRDRHR 419 (422)
T ss_dssp EHHHHHHHHTTCSSGGGGCSCC-----
T ss_pred cHHHHHHHHhCCCcHHhEEecCCCCCC
Confidence 999999999999999999999998753
No 9
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=2.3e-75 Score=673.97 Aligned_cols=352 Identities=27% Similarity=0.469 Sum_probs=278.7
Q ss_pred cceEEEEeeeeeecccCCCCCccccccC------------ccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhc
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYN------------KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLAT 364 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~------------~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~ 364 (883)
+++||.++++++++++..++|+.+++.. ..++++|+++||||||++.+++++++|+.|++++|+|| +
T Consensus 115 g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~-~ 193 (487)
T 1eov_A 115 QNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYL-A 193 (487)
T ss_dssp EEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4789999999999999778999775432 36789999999999999999999999999999999999 6
Q ss_pred CCCeEEEcCCeeccCC-CCCCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecc
Q psy8372 365 HRDFVEVETPTLFKRT-PGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQL 442 (883)
Q Consensus 365 ~~gF~EV~TP~l~~~~-~~ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~l 442 (883)
++||+||+||+|+++. ++||+.|.+++. +..+||+||||+|+|++|++|++||||||||||+|+++++|| ||||||
T Consensus 194 ~~gF~EV~TPil~~~~~~~ga~~f~~~~~--~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~l 271 (487)
T 1eov_A 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYF--KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGL 271 (487)
T ss_dssp HTTCEECCCCSEESSCSSSSSCCCEEEET--TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEE
T ss_pred hCCcEEEeCCEEEEecCCCCcccceeccC--CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhh
Confidence 8999999999999874 567888999874 788999999999999999999999999999999999998777 799999
Q ss_pred cccccCC-CHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCC
Q psy8372 443 DIELSFT-TRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAG 521 (883)
Q Consensus 443 e~e~~~~-~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 521 (883)
|+||+|. +++|+|+++|+||+++++.+.. |++.++.+ ++.. ||.
T Consensus 272 e~e~af~~~~~dlm~l~E~ll~~l~~~v~~---------------------~~~~~l~~-~~~~------~~~------- 316 (487)
T 1eov_A 272 DMEMAFEEHYHEVLDTLSELFVFIFSELPK---------------------RFAHEIEL-VRKQ------YPV------- 316 (487)
T ss_dssp EEEEECSSCTHHHHHHHHHHHHHHHHHHHH---------------------HCHHHHHH-HHHH------SCC-------
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHh---------------------hchhHHHh-hhhh------cCC-------
Confidence 9999997 5999999999999999876321 22333333 3222 000
Q ss_pred CCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccc
Q psy8372 522 EPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNV 601 (883)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (883)
..+. .+. .|...
T Consensus 317 ---------~~~~------------------------------------------~~~----------~~~~~------- 328 (487)
T 1eov_A 317 ---------EEFK------------------------------------------LPK----------DGKMV------- 328 (487)
T ss_dssp ---------CCCC------------------------------------------CCT----------TCCCE-------
T ss_pred ---------ccee------------------------------------------ccc----------CCCee-------
Confidence 0000 000 00000
Q ss_pred cccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHH
Q psy8372 602 DNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNK 681 (883)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (883)
.| ...++.+++ +.
T Consensus 329 -------------------ri-----------~~~ea~~~l-------------------------------------~~ 341 (487)
T 1eov_A 329 -------------------RL-----------TYKEGIEML-------------------------------------RA 341 (487)
T ss_dssp -------------------EE-----------EHHHHHHHH-------------------------------------HH
T ss_pred -------------------EE-----------EHHHHHHHH-------------------------------------HH
Confidence 01 111111222 22
Q ss_pred cCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCC
Q psy8372 682 ENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPH 760 (883)
Q Consensus 682 ~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~ 760 (883)
.|++.+|.. +......+.||+++.+.+ . ..|+||+|||+. |||| |+|+
T Consensus 342 ~g~~~~~~~----d~~~~~e~~l~~~~~~~~------------~----~~~~~v~dyP~~-----------~~pfy~~~~ 390 (487)
T 1eov_A 342 AGKEIGDFE----DLSTENEKFLGKLVRDKY------------D----TDFYILDKFPLE-----------IRPFYTMPD 390 (487)
T ss_dssp TTCCCCTTC----CCCHHHHHHHHHHHHHHS------------C----CSEEEEECCBGG-----------GSCTTBCBC
T ss_pred hCCCCCccc----chhhHHHHHHHHHHHHHh------------C----CCCEEEECCccc-----------cChhhcCcC
Confidence 222222221 112345678888876533 1 247999999997 9998 8999
Q ss_pred CCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcc--cHHHHHHHhhcCCCCCcceeccHHH
Q psy8372 761 PEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS--SLQHMIQAFKYGCPPHGGIALGIDR 838 (883)
Q Consensus 761 ~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~--~~~~~l~a~~~G~pPhgG~glGldR 838 (883)
++|+.+ +++|||++||+||+|||+|+|||++|+++|+.+|++++ .++|||+|++||+||||||||||||
T Consensus 391 ~~dp~~---------~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDR 461 (487)
T 1eov_A 391 PANPKY---------SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLER 461 (487)
T ss_dssp SSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHH
T ss_pred CCCCCe---------EEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHH
Confidence 887543 58999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCC
Q psy8372 839 LMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 839 lvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|++||||||+|||+.+-
T Consensus 462 Lvmll~g~~~IRdVi~FPr~~~r 484 (487)
T 1eov_A 462 VVMFYLDLKNIRRASLFPRDPKR 484 (487)
T ss_dssp HHHHHTTCSSGGGGCSSCCBTTB
T ss_pred HHHHHcCCCcHHheeecCCCCCC
Confidence 99999999999999999998653
No 10
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-75 Score=666.55 Aligned_cols=322 Identities=33% Similarity=0.570 Sum_probs=273.2
Q ss_pred ceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeec
Q psy8372 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLF 377 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~ 377 (883)
++||.++++++++++..++|+++++....++++|+++||||||++.+++++++|++|++++|+|| .++||+||+||+|+
T Consensus 84 ~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff-~~~gF~eV~TP~l~ 162 (429)
T 1wyd_A 84 GIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETL-YKEGFIEIFTPKII 162 (429)
T ss_dssp GEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEE
T ss_pred cEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHH-hhCCCEEEECCEEE
Confidence 57899999999999988999877643347899999999999999999999999999999999999 68999999999999
Q ss_pred cCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHHH
Q psy8372 378 KRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVM 455 (883)
Q Consensus 378 ~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dvm 455 (883)
.++++|+.+ |.+++. +..+||+||||+|+|+ |++|++||||||||||+|+++++|| |||||+|+|++|.+++|+|
T Consensus 163 ~~~~e~~~~~f~~~~~--~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm 239 (429)
T 1wyd_A 163 ASATEGGAQLFPVIYF--GKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVM 239 (429)
T ss_dssp SSCSSTTCCCCEEEET--TEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHH
T ss_pred eeCCCCCceeEEEecC--CceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHH
Confidence 888877765 999754 6889999999999998 7888999999999999999998766 8999999999999999999
Q ss_pred HHHHHHHHHHhcc---------------C---CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCC
Q psy8372 456 RLIEELLCYCLNI---------------P---TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLP 517 (883)
Q Consensus 456 ~~~E~li~~i~~~---------------~---~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~ 517 (883)
+++|+|++++++. + +.||+||||.||++.|.... +.
T Consensus 240 ~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g------------~~-------------- 293 (429)
T 1wyd_A 240 QLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKG------------YN-------------- 293 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSS------------CC--------------
T ss_pred HHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcC------------CC--------------
Confidence 9999999999863 2 36999999999999863110 00
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEee
Q psy8372 518 RRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQ 597 (883)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (883)
+. |
T Consensus 294 ---------------~~------~-------------------------------------------------------- 296 (429)
T 1wyd_A 294 ---------------IK------F-------------------------------------------------------- 296 (429)
T ss_dssp ---------------CC------T--------------------------------------------------------
T ss_pred ---------------cc------c--------------------------------------------------------
Confidence 00 0
Q ss_pred eccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHH
Q psy8372 598 IKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEE 677 (883)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (883)
|.++ +
T Consensus 297 -----------------~~~l------------~---------------------------------------------- 301 (429)
T 1wyd_A 297 -----------------GDDI------------G---------------------------------------------- 301 (429)
T ss_dssp -----------------TSCC------------C----------------------------------------------
T ss_pred -----------------Cccc------------C----------------------------------------------
Confidence 0000 0
Q ss_pred HHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-
Q psy8372 678 FRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF- 756 (883)
Q Consensus 678 ~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF- 756 (883)
......|++ .+ .+ .|+||+|||++ +|||
T Consensus 302 --------------------~~~e~~l~~------------~~----~~----~p~fv~d~P~~-----------~~pfy 330 (429)
T 1wyd_A 302 --------------------TPELRILNE------------EL----KE----DLYFIVDWPSD-----------ARPFY 330 (429)
T ss_dssp --------------------HHHHHHHHH------------HH----CC----SEEEEECCBGG-----------GSCTT
T ss_pred --------------------cHHHHHHHH------------Hh----cc----CCEEEecCChh-----------hChhh
Confidence 000112221 11 11 46999999998 8999
Q ss_pred CCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccH
Q psy8372 757 TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGI 836 (883)
Q Consensus 757 t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGl 836 (883)
++++++|+.+ +++|||++||+||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+||||||||||
T Consensus 331 ~~~~~~~p~~---------~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGi 401 (429)
T 1wyd_A 331 TKSKSENPEL---------SESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGL 401 (429)
T ss_dssp BCBCCC-CCB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEH
T ss_pred CCcCCCCCCe---------EEEEEEEECCEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcH
Confidence 7788776543 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCCCC
Q psy8372 837 DRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 837 dRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|+|++||||||+|||+++-
T Consensus 402 DRLvmll~g~~~Irdvi~FP~~~~~ 426 (429)
T 1wyd_A 402 ARLMVMLTGIQSVKEIVPFPRDKKR 426 (429)
T ss_dssp HHHHHHHHCCCCGGGTSSSCCBTTB
T ss_pred HHHHHHHcCCCcHHhEEecCCCCCC
Confidence 9999999999999999999999754
No 11
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.5e-74 Score=667.11 Aligned_cols=327 Identities=28% Similarity=0.491 Sum_probs=256.0
Q ss_pred cceEEEEeeeeeecccCCCCCcccccc-----------------------------------------------------
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNY----------------------------------------------------- 323 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~----------------------------------------------------- 323 (883)
+++||.++++++++++..++|+.+++.
T Consensus 138 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 217 (548)
T 3i7f_A 138 QDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQ 217 (548)
T ss_dssp CSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCC
T ss_pred CcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 468899999999999888888886431
Q ss_pred --CccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceeccCCCCceeeE
Q psy8372 324 --NKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVPTHEPNKFYSL 400 (883)
Q Consensus 324 --~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~~~~~~~~~~L 400 (883)
...++++||++||||||++.++++|++||+|+++||+|| +++||+||+||+|++++++ ||+.|.++++ +..+||
T Consensus 218 ~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~~egga~~F~v~~~--~~~~yL 294 (548)
T 3i7f_A 218 KYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFL-TSQKFVEIHTPKLIGCSSEGGSNIFEVKYF--DRKAYL 294 (548)
T ss_dssp CCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSBC---------------------CCB
T ss_pred ccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeCCEEecccCCCCcceeEEecC--CCceEe
Confidence 135789999999999999999999999999999999999 6899999999999988765 7788999876 466899
Q ss_pred ecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCC-CHHHHHHHHHHHHHHHhccCC--------
Q psy8372 401 VQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFT-TRDDVMRLIEELLCYCLNIPT-------- 470 (883)
Q Consensus 401 ~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~-~~~dvm~~~E~li~~i~~~~~-------- 470 (883)
+||||||||++|++|++||||||||||||+++++|| |||||||+||+|. +++|+|+++|+||+++++.+.
T Consensus 295 ~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~ 374 (548)
T 3i7f_A 295 AQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELK 374 (548)
T ss_dssp CSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999987776 9999999999998 699999999999999886531
Q ss_pred -------------CCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy8372 471 -------------RTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSV 537 (883)
Q Consensus 471 -------------~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 537 (883)
.||+||||.||++.+
T Consensus 375 ~~~~~~~~~~~~~~pf~rit~~eai~~l---------------------------------------------------- 402 (548)
T 3i7f_A 375 VIRKQYPFEDLIYRPFLRLTYKEAIEML---------------------------------------------------- 402 (548)
T ss_dssp HHHHHSCCCCCCCCSCEEEEHHHHHHHH----------------------------------------------------
T ss_pred HhhhcCCccccccCCcceeEHHHHHHHH----------------------------------------------------
Confidence 244444444444432
Q ss_pred cccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCcc
Q psy8372 538 LGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGED 617 (883)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (883)
T Consensus 403 -------------------------------------------------------------------------------- 402 (548)
T 3i7f_A 403 -------------------------------------------------------------------------------- 402 (548)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCc
Q psy8372 618 VYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQ 697 (883)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 697 (883)
++.. . .++.++ +..
T Consensus 403 -------------------------~~~g-~----------------------------------~~~~~~------dl~ 416 (548)
T 3i7f_A 403 -------------------------RASG-E----------------------------------TIGDYD------DFT 416 (548)
T ss_dssp -------------------------HHTT-C----------------------------------CCCTTC------CCC
T ss_pred -------------------------HHcC-C----------------------------------CCCCcc------ccc
Confidence 1100 0 000000 001
Q ss_pred hhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCc-CCCCCCChhhhccCCCCccc
Q psy8372 698 EDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPF-TQPHPEDEHLLSSNPLEVRG 776 (883)
Q Consensus 698 ~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PF-t~p~~~d~~~~~~~~~~~~~ 776 (883)
......||++..+.+ .. .+++|+|||.. .+|| ++++++|+.+ +
T Consensus 417 ~~~e~~l~~~i~~~~------------~~----~~~~i~~yP~~-----------~~pfYak~~~~dp~~---------~ 460 (548)
T 3i7f_A 417 TPQEVKLGELIKAKY------------NT----DFYILDKFPAA-----------IRPFYTMPDIDDPNY---------S 460 (548)
T ss_dssp HHHHHHHHHHHHHHH------------CC----SEEEEECCBGG-----------GSCTTBCBCSSCTTB---------B
T ss_pred hHHHHHHHHHHHHHc------------CC----CeEEEecCccc-----------cCchhhccCCCCCCe---------E
Confidence 123345666554433 12 25778999986 7999 7788887665 4
Q ss_pred eeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCC
Q psy8372 777 LHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856 (883)
Q Consensus 777 ~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FP 856 (883)
++|||+++|.||+|||+|+|||++|+++|+..|++++.++|||+|++||||||||||||||||+|+|+|++||||||+||
T Consensus 461 ~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FP 540 (548)
T 3i7f_A 461 NSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFP 540 (548)
T ss_dssp SEEEEEETTEEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSC
T ss_pred EEEEEEECCEEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy8372 857 KGFG 860 (883)
Q Consensus 857 k~~~ 860 (883)
|+.+
T Consensus 541 R~p~ 544 (548)
T 3i7f_A 541 RDPI 544 (548)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 9864
No 12
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=5.8e-74 Score=654.21 Aligned_cols=318 Identities=26% Similarity=0.454 Sum_probs=270.3
Q ss_pred ceEEEEeeeeeecccCCCCCc--cccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCe
Q psy8372 298 SKEVIASNITVLNKADVNIPF--HIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPT 375 (883)
Q Consensus 298 ~iEI~~e~i~vl~k~~~~lP~--~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~ 375 (883)
++||.++++++++++ .++|+ ..+ ..++++|+++||||||++.+++++++|+.|++++|+|| .++||+||+||+
T Consensus 87 ~~el~~~~~~vl~~~-~~~P~~~~~~---~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f-~~~gF~eVeTP~ 161 (434)
T 1x54_A 87 GAEVHVEKLEVIQAV-SEFPIPENPE---QASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWL-LKDGWHEVFPPI 161 (434)
T ss_dssp GEEEEEEEEEEEECC-SCCSSCSSGG---GSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCS
T ss_pred cEEEEEeEEEEeecC-CCCCCccccc---CCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCcE
Confidence 689999999999999 88998 443 36799999999999999999999999999999999999 689999999999
Q ss_pred eccCCCCCCcc-ceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHH
Q psy8372 376 LFKRTPGGARE-FVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDD 453 (883)
Q Consensus 376 l~~~~~~ga~~-f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~d 453 (883)
|+.+.++|+.+ |.+++. +..+||+||||+|+|+ |+++++||||||||||+|+++++|| |||||+|+|++|.+++|
T Consensus 162 l~~~~~e~~~~~f~~~~~--~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 238 (434)
T 1x54_A 162 LVTGAVEGGATLFKLKYF--DKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWD 238 (434)
T ss_dssp EESCCSSCGGGCCEEEET--TEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHH
T ss_pred EEeecCCCCceeEEEeec--CCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHH
Confidence 99888887765 988754 6789999999999998 7788999999999999999998766 89999999999999999
Q ss_pred HHHHHHHHHHHHhccC---------------------CCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 454 VMRLIEELLCYCLNIP---------------------TRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 454 vm~~~E~li~~i~~~~---------------------~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
+|+++|+|++++++.+ +.||+||||.||++.|.... +.
T Consensus 239 lm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g------------~~--------- 297 (434)
T 1x54_A 239 IMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKG------------VN--------- 297 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTT------------CC---------
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcC------------CC---------
Confidence 9999999999998641 34899999999998863210 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
+. |
T Consensus 298 --------------------~~------~--------------------------------------------------- 300 (434)
T 1x54_A 298 --------------------VE------W--------------------------------------------------- 300 (434)
T ss_dssp --------------------CC------T---------------------------------------------------
T ss_pred --------------------cc------c---------------------------------------------------
Confidence 00 0
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
|.++ +
T Consensus 301 ----------------------~~dl------------~----------------------------------------- 305 (434)
T 1x54_A 301 ----------------------GDDL------------G----------------------------------------- 305 (434)
T ss_dssp ----------------------TCCC------------C-----------------------------------------
T ss_pred ----------------------CCcc------------C-----------------------------------------
Confidence 0000 0
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
......|+ + .+. +|+||+|||++
T Consensus 306 -------------------------~~~e~~l~------------~----~~~-----~p~fv~d~P~~----------- 328 (434)
T 1x54_A 306 -------------------------ADEERVLT------------E----EFD-----RPFFVYGYPKH----------- 328 (434)
T ss_dssp -------------------------HHHHHHHH------------T----TCS-----SCEEEEEEEGG-----------
T ss_pred -------------------------hHHHHHHH------------H----HhC-----CcEEEEcCChh-----------
Confidence 00011111 1 122 35999999998
Q ss_pred ccCc-CCCCCCChhhhccCCCCccceeeEEEec-Ce-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC
Q psy8372 753 HHPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLN-GN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH 829 (883)
Q Consensus 753 h~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~-G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh 829 (883)
+||| ++++++|+.+ +++|||++| |+ ||+|||+|+|||++|+++|+.+|++++.|+|||+|++||+|||
T Consensus 329 ~~pfy~~~~~~~p~~---------~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~ 399 (434)
T 1x54_A 329 IKAFYMKEDPNDPRK---------VLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPH 399 (434)
T ss_dssp GSCTTBCBCSSCTTE---------EEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCE
T ss_pred hCcccCCcCCCCCCe---------EEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCc
Confidence 8999 8888776543 599999999 98 9999999999999999999999999999999999999999999
Q ss_pred cceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 830 GGIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 830 gG~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
||||||||||+|+|+|++||||||+|||+++-.
T Consensus 400 ~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~ 432 (434)
T 1x54_A 400 SGFGLGVERLVAWVLKLDHIRWAALFPRTPARL 432 (434)
T ss_dssp EEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBC
T ss_pred eEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCC
Confidence 999999999999999999999999999997543
No 13
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-72 Score=651.65 Aligned_cols=350 Identities=23% Similarity=0.387 Sum_probs=283.5
Q ss_pred ccceEEEEeeeeeecccCCCCCccccccCccchhhhccccccccc-ChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 296 LLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFR-FPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 296 ~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr-~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
.+++||.+++++++++|..++|+.. ++..++++|+++|||||| ++.++++|++||+|+++||+|| +++||+||+||
T Consensus 125 ~ge~ei~~~~i~~l~~~~~~lP~~~--~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~-~~~gF~EVeTP 201 (521)
T 3bju_A 125 KGELSIIPYEITLLSPCLHMLPHLH--FGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETP 201 (521)
T ss_dssp TCCEEEEEEEEEEEECCCSCCCCC------CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC
T ss_pred CCCEEEEEeEEEEeecCCCCCCCcc--ccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEeCc
Confidence 3579999999999999988888654 335689999999999999 7999999999999999999999 68999999999
Q ss_pred eeccCCCCCC--ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHH
Q psy8372 375 TLFKRTPGGA--REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRD 452 (883)
Q Consensus 375 ~l~~~~~~ga--~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~ 452 (883)
+|++ +++|| ++|.++++..+..+||+||||||+|++|++|++||||||||||||+++++|+|||||||+||+|+|++
T Consensus 202 iL~~-~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~ 280 (521)
T 3bju_A 202 MMNI-IPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYH 280 (521)
T ss_dssp SEES-SCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHH
T ss_pred eeec-cCCCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHH
Confidence 9975 56664 67999877778999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----------------------CCCCceeeehHHHHHHh-CCCCCCccccchhhhhhcCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI----------------------PTRTFSRISYNDAISLY-GSDKPDLRYDCKIMIAIKEQPPWP 509 (883)
Q Consensus 453 dvm~~~E~li~~i~~~----------------------~~~~f~rity~ea~~~y-g~~~~d~r~~~~~~~~~~~~~~~~ 509 (883)
|+|+++|+||+++++. ++.||+|+||.||++.+ |.+.++
T Consensus 281 dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~------------------ 342 (521)
T 3bju_A 281 DLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPE------------------ 342 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHhCCCCCc------------------
Confidence 9999999999999863 34689999999999886 322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccc
Q psy8372 510 SGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRA 589 (883)
Q Consensus 510 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (883)
+.++
T Consensus 343 ------------------------------------------------------~~~l---------------------- 346 (521)
T 3bju_A 343 ------------------------------------------------------TNLF---------------------- 346 (521)
T ss_dssp ------------------------------------------------------GGGT----------------------
T ss_pred ------------------------------------------------------cccC----------------------
Confidence 0000
Q ss_pred cceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCccccccccccc
Q psy8372 590 FRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKI 669 (883)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (883)
-+....+.+.+++++
T Consensus 347 ----------------------------------------~~~~~~~~l~~~~~~------------------------- 361 (521)
T 3bju_A 347 ----------------------------------------ETEETRKILDDICVA------------------------- 361 (521)
T ss_dssp ----------------------------------------TSHHHHHHHHHHHHH-------------------------
T ss_pred ----------------------------------------CcHHHHHHHHHHHHH-------------------------
Confidence 000112233333332
Q ss_pred CChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCc
Q psy8372 670 LPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTL 749 (883)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~ 749 (883)
.+++. ... ...|.+..+++ ++.+++.+.+| +||+|||..
T Consensus 362 ------------~~~~~--------~~~----~~~~~~l~~~~----e~~ve~~l~~P-----~fI~dyP~~-------- 400 (521)
T 3bju_A 362 ------------KAVEC--------PPP----RTTARLLDKLV----GEFLEVTCINP-----TFICDHPQI-------- 400 (521)
T ss_dssp ------------TTCCC--------CSC----CCHHHHHHHHH----HHHTGGGCCSC-----EEEECCBGG--------
T ss_pred ------------cCCCC--------CCC----CCHHHHHHHHH----HHHHHHhcCCc-----EEEECCccc--------
Confidence 11110 000 01234433333 35556666555 999999997
Q ss_pred cccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC------CCCccc--HHHHHHH
Q psy8372 750 ESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL------NIETSS--LQHMIQA 821 (883)
Q Consensus 750 ~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~------~~~~~~--~~~~l~a 821 (883)
.+||++++++|+.+ +++|||+++|.||+|||+|+|||++|+++|+.. |.+++. ++|||+|
T Consensus 401 ---~spla~~~~~dp~~---------~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~a 468 (521)
T 3bju_A 401 ---MSPLAKWHRSKEGL---------TERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTA 468 (521)
T ss_dssp ---GCTTBCBCSSSTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHH
T ss_pred ---cCcccccCCCCCCe---------eeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHH
Confidence 79999999887654 489999999999999999999999999999543 777765 6999999
Q ss_pred hhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 822 FKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 822 ~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
++||||||||||||||||||+|||++||||||+||++++.
T Consensus 469 l~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 469 LEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred HhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 9999999999999999999999999999999999999875
No 14
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=8.4e-71 Score=628.90 Aligned_cols=326 Identities=29% Similarity=0.421 Sum_probs=262.9
Q ss_pred cceEEEEeeeeeecccCC--CCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCC
Q psy8372 297 LSKEVIASNITVLNKADV--NIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP 374 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~--~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP 374 (883)
+++||.++++++++++.. .+|+..+ ..++++|+++||||||++.++++|++||+|++++|+|| +++||+||+||
T Consensus 82 g~~El~~~~~~vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff-~~~gFlEVeTP 157 (435)
T 2xgt_A 82 NGHELIADFWKIIGNAPPGGIDNVLNE---EASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHF-YNAGYVEVAPP 157 (435)
T ss_dssp TTEEEEEEEEEEEECCCTTHHHHHCC-----CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCC
T ss_pred CcEEEEEEEEEEeecCCCccccccccc---CCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECC
Confidence 468999999999998521 1233222 46799999999999999999999999999999999999 68999999999
Q ss_pred eeccCCCCCC-ccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHH
Q psy8372 375 TLFKRTPGGA-REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRD 452 (883)
Q Consensus 375 ~l~~~~~~ga-~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~ 452 (883)
+|++++++|+ ..|.+++. +.++||+||||+|||++|+ |++||||||||||||+++++|| |||||||+||+|+|++
T Consensus 158 iL~~s~~eG~~~~F~~~~~--g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~ 234 (435)
T 2xgt_A 158 TLVQTQVEGGSTLFNLDYF--GEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLD 234 (435)
T ss_dssp SEESCCSSCTTSCCEEEET--TEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHH
T ss_pred eEeeccCCCchhceeeccC--CcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHH
Confidence 9998876655 67988864 7889999999999999875 6999999999999999998766 7999999999999999
Q ss_pred HHHHHHHHHHHHHhcc--------------------CCCCceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCC
Q psy8372 453 DVMRLIEELLCYCLNI--------------------PTRTFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGY 512 (883)
Q Consensus 453 dvm~~~E~li~~i~~~--------------------~~~~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~ 512 (883)
|+|+++|+||+++++. ++.||+||||.||++.+.... +...
T Consensus 235 d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~------------~~~~------- 295 (435)
T 2xgt_A 235 DLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHN------------VENE------- 295 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTT------------CBCT-------
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcC------------CCcc-------
Confidence 9999999999998763 126999999999998753210 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhccccce
Q psy8372 513 PTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRT 592 (883)
Q Consensus 513 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (883)
.. ..+
T Consensus 296 --------------------~~------------------------------~~~------------------------- 300 (435)
T 2xgt_A 296 --------------------FG------------------------------NTF------------------------- 300 (435)
T ss_dssp --------------------TS------------------------------CBC-------------------------
T ss_pred --------------------cc------------------------------ccc-------------------------
Confidence 00 000
Q ss_pred eEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCCh
Q psy8372 593 TVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPD 672 (883)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (883)
.+|.++
T Consensus 301 --------------------~~g~~l------------------------------------------------------ 306 (435)
T 2xgt_A 301 --------------------TYGEDI------------------------------------------------------ 306 (435)
T ss_dssp --------------------CTTSCC------------------------------------------------------
T ss_pred --------------------chhhHH------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCcccc
Q psy8372 673 LNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESA 752 (883)
Q Consensus 673 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~ 752 (883)
.......|. + .+. .++||+|||+.
T Consensus 307 ------------------------~~~~e~~l~------------~----~~~-----~p~fv~d~P~~----------- 330 (435)
T 2xgt_A 307 ------------------------AEAAERFMT------------D----TIN-----KPILLNRFPSE----------- 330 (435)
T ss_dssp ------------------------CHHHHHHHH------------H----HHT-----SCEEEECCBGG-----------
T ss_pred ------------------------HHHHHHHHH------------H----hcC-----CcEEEECCChh-----------
Confidence 000011111 1 122 34999999996
Q ss_pred ccCcCCC-CCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCc
Q psy8372 753 HHPFTQP-HPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHG 830 (883)
Q Consensus 753 h~PFt~p-~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhg 830 (883)
.+||+++ +++|+.+ +++|||++||+ ||+|||+|+||+++|+++|+.+|+++++|+|||+|++||+||||
T Consensus 331 ~~~f~a~~~~~~p~~---------~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhg 401 (435)
T 2xgt_A 331 IKAFYMQRDAQDNTL---------TESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHG 401 (435)
T ss_dssp GSCTTBCBCSSCTTB---------BSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEE
T ss_pred hCcccCCCCCCCcCe---------EEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCc
Confidence 6899654 5554432 69999999996 99999999999999999999999999999999999999999999
Q ss_pred ceeccHHHHHHHHhCCCCccccccCCCCCCCC
Q psy8372 831 GIALGIDRLMSILCGTQSIRDVIAFPKGFGGK 862 (883)
Q Consensus 831 G~glGldRlvm~l~~~~sIRdvi~FPk~~~~~ 862 (883)
|||||||||+|+|+|++||||||+|||+.+-.
T Consensus 402 G~glGiDRLvmll~g~~~Irdvi~FPr~~~~~ 433 (435)
T 2xgt_A 402 GYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 433 (435)
T ss_dssp EEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBC
T ss_pred eEEEhHHHHHHHHcCCCcHHhEecccCCcCCC
Confidence 99999999999999999999999999987543
No 15
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=5.7e-70 Score=622.96 Aligned_cols=322 Identities=28% Similarity=0.473 Sum_probs=265.1
Q ss_pred cceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCee
Q psy8372 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL 376 (883)
Q Consensus 297 ~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l 376 (883)
+++||.++++++++++..++|.... ...++++|+++||||+|++.++++|++||+|++++|+|| +++||+||+||+|
T Consensus 107 g~~El~~~~i~vl~~a~~~~~~~~~--~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL 183 (456)
T 3m4p_A 107 LNLEMQVTEWKVIGESPIDLENIIN--KDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYY-HDNHFTEIQPPTI 183 (456)
T ss_dssp CSSEEEEEEEEEEECCCGGGTTTSC--TTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSE
T ss_pred CcEEEEEeEEEEEecCCCCCccccc--ccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeCCee
Confidence 5789999999999999655553332 346789999999999999999999999999999999999 6899999999999
Q ss_pred ccCCCC-CCccceeccCCCCceeeEecCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCC-cceecccccccCCCHHHH
Q psy8372 377 FKRTPG-GAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDV 454 (883)
Q Consensus 377 ~~~~~~-ga~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~-~EFt~le~e~~~~~~~dv 454 (883)
++++++ |+..|.+.++ +..+||+||||||||++|+ |++||||||||||||+++++|| |||||||+||+|.|++|+
T Consensus 184 ~~s~~eGg~~~f~~~~~--~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~ 260 (456)
T 3m4p_A 184 VKTQCEGGSTLFKLQYF--NEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDL 260 (456)
T ss_dssp EC------CCCCEEEET--TEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHH
T ss_pred ecCCCCCcccccccccc--CCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHH
Confidence 988765 5566988765 6889999999999998775 6999999999999999998777 899999999999999999
Q ss_pred HHHHHHHHHHHhcc------------------CCCCceeeehHHHHHHh---CCCCCCccccchhhhhhcCCCCCCCCCC
Q psy8372 455 MRLIEELLCYCLNI------------------PTRTFSRISYNDAISLY---GSDKPDLRYDCKIMIAIKEQPPWPSGYP 513 (883)
Q Consensus 455 m~~~E~li~~i~~~------------------~~~~f~rity~ea~~~y---g~~~~d~r~~~~~~~~~~~~~~~~~~~p 513 (883)
|+++|+||+++++. ++.||+||||.||++.+ |.+.++ .
T Consensus 261 m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~-------------~-------- 319 (456)
T 3m4p_A 261 LNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD-------------K-------- 319 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS-------------S--------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc-------------c--------
Confidence 99999999999864 35699999999999864 211000 0
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhhhcccccccchhhhhcccccee
Q psy8372 514 TRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTT 593 (883)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (883)
... |
T Consensus 320 ------------------~~~------~---------------------------------------------------- 323 (456)
T 3m4p_A 320 ------------------PFE------Y---------------------------------------------------- 323 (456)
T ss_dssp ------------------CCC------T----------------------------------------------------
T ss_pred ------------------Ccc------h----------------------------------------------------
Confidence 000 0
Q ss_pred EEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChh
Q psy8372 594 VLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDL 673 (883)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (883)
|.++ .
T Consensus 324 ---------------------g~~l------------~------------------------------------------ 328 (456)
T 3m4p_A 324 ---------------------GEDI------------S------------------------------------------ 328 (456)
T ss_dssp ---------------------TCCC------------C------------------------------------------
T ss_pred ---------------------HHHH------------H------------------------------------------
Confidence 0000 0
Q ss_pred hHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccc
Q psy8372 674 NVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAH 753 (883)
Q Consensus 674 ~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h 753 (883)
......++. .+.+| +||+|||.. .
T Consensus 329 ------------------------~~~e~~l~~----------------~~~~P-----~fv~~yP~~-----------~ 352 (456)
T 3m4p_A 329 ------------------------EKPERQMTD----------------EIGCP-----IFMIHFPSK-----------M 352 (456)
T ss_dssp ------------------------HHHHHHHHH----------------HHTSC-----EEEECCBGG-----------G
T ss_pred ------------------------HHHHHHHHH----------------HhCce-----EEEECCCch-----------h
Confidence 001111111 23334 899999986 7
Q ss_pred cCc-CCCCCCChhhhccCCCCccceeeEEEecCe-EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcc
Q psy8372 754 HPF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGN-EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGG 831 (883)
Q Consensus 754 ~PF-t~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~-Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG 831 (883)
.|| ++++++|+.+ +++|||+++|+ ||+|||+|+|||++|+++|+..|++++.++|||+|++||+|||||
T Consensus 353 ~pfy~k~~~~dp~~---------~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG 423 (456)
T 3m4p_A 353 KAFYMSKVPGHPDL---------TESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGG 423 (456)
T ss_dssp SCTTBCEETTEEEE---------ECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEE
T ss_pred CccccccCCCCCCe---------eEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccE
Confidence 898 7778887665 48999999996 999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 832 IALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 832 ~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
||||||||+|+++|++||||||+|||+.+-
T Consensus 424 ~GlGidRLvm~ltg~~~Irdvi~FPr~~~r 453 (456)
T 3m4p_A 424 YGLGVERLVMWLLGEDHIRKVCLYPRYLER 453 (456)
T ss_dssp EEEEHHHHHHHHHTCSCGGGGSSSCBBTTB
T ss_pred EEEcHHHHHHHHcCCccHHHeeccCCCCCC
Confidence 999999999999999999999999998643
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=5.2e-67 Score=579.31 Aligned_cols=300 Identities=23% Similarity=0.329 Sum_probs=237.1
Q ss_pred cChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCCC--CccceeccCC----CCceeeEecCHHHHHHHHHc
Q psy8372 340 RFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTHE----PNKFYSLVQSPQQLKQLLMV 413 (883)
Q Consensus 340 r~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~g--a~~f~v~~~~----~~~~~~L~~Spql~kq~l~~ 413 (883)
|+. .++++++||+|+++||+|| +++||+||+||+|++++++| +.+|.+.++. .+..+||+||||+|||++|+
T Consensus 29 ~~~-~~~~lr~Rs~i~~~iR~ff-~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 29 PSA-SIPNLLKRAAIMAEIRRFF-ADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHHHHHH-HHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 444 8899999999999999999 68999999999999887764 4579988763 23668899999999999999
Q ss_pred cCCCcEEEEeeceecCCCCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccCCCCceeeehHHHHHHh-CCCCCCc
Q psy8372 414 GSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISLY-GSDKPDL 492 (883)
Q Consensus 414 ~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~~~~f~rity~ea~~~y-g~~~~d~ 492 (883)
+|++||||||||||||+++++|+|||||||+|++|.|++|+|+++|+||+++++. .||+||||.||+++| |.|+|+.
T Consensus 107 ~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~--~~~~rity~ea~~~~~g~d~~~~ 184 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--PAAESLSYQQAFLRYLEIDPLSA 184 (345)
T ss_dssp TTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC--CCCEEEEHHHHHHHHTCCCTTCC
T ss_pred cCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC--CCCcEeeHHHHHHHHhCCCCCCC
Confidence 9999999999999999998888899999999999999999999999999999985 499999999999998 7765531
Q ss_pred cccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccCCCCCCccccchhhh
Q psy8372 493 RYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHI 572 (883)
Q Consensus 493 r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (883)
+ +.+.
T Consensus 185 -------~-~~~l------------------------------------------------------------------- 189 (345)
T 3a5y_A 185 -------D-KTQL------------------------------------------------------------------- 189 (345)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------C-HHHH-------------------------------------------------------------------
Confidence 0 0000
Q ss_pred hcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccchhhHHHHHHHHHHhcCCCcce
Q psy8372 573 QFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMS 652 (883)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (883)
.+++++. | +.
T Consensus 190 ------------------------------------------------------------------~~~~~~~-g---~~ 199 (345)
T 3a5y_A 190 ------------------------------------------------------------------REVAAKL-D---LS 199 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------HHHHHHc-C---Cc
Confidence 0000000 0 00
Q ss_pred EEEecCcccccccccccCChhhHHHHHHHcCCCCC-cEEEEecCCchhhHhHHHHHHHHhhhhcccccCCcccCCCCCcc
Q psy8372 653 TVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEG-DLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFS 731 (883)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~i~~~~~~~~~~~~~lg~lr~~~~~~~~~~~l~~~l~~~~~~~ 731 (883)
| ++.+ + +........++ +.+++.+. ..+
T Consensus 200 ---------~---------------------~~~~~~------~~~~~~e~~l~------------~~ve~~lg---~~~ 228 (345)
T 3a5y_A 200 ---------N---------------------VADTEE------DRDTLLQLLFT------------FGVEPNIG---KEK 228 (345)
T ss_dssp ----------------------------------------------HHHHHHHH------------HHTGGGSS---SSS
T ss_pred ---------c---------------------cCCCcC------CHhHHHHHHHH------------HHHHHHcC---CCC
Confidence 0 0000 0 00000111111 22333342 124
Q ss_pred EEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEecCeEEeeeeeccCCHHHHHHHHHhC---
Q psy8372 732 IFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFL--- 808 (883)
Q Consensus 732 f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~--- 808 (883)
|+||+|||++ ..||++++++|+.+ +++|||++||+||+|||+|+||+++|+++|+..
T Consensus 229 p~fv~dyP~~-----------~~~~~~~~~~~~~~---------a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~ 288 (345)
T 3a5y_A 229 PTFVYHFPAS-----------QASLAQISTEDHRV---------AERFEVYYKGIELANGFHELTDAREQQQRFEQDNRK 288 (345)
T ss_dssp CEEEECCBGG-----------GCTTBCBCSSCTTB---------BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCChh-----------hChhhCCCCCCCCe---------EEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHH
Confidence 6999999998 68999887766432 689999999999999999999999999999664
Q ss_pred ----CCCcccH-HHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccccCCCCC
Q psy8372 809 ----NIETSSL-QHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859 (883)
Q Consensus 809 ----~~~~~~~-~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi~FPk~~ 859 (883)
|++++.+ +|||+|++||+|||||||||||||||+|+|++||||||+|||++
T Consensus 289 ~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 289 RAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 8888887 69999999999999999999999999999999999999999985
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=3.9e-58 Score=500.11 Aligned_cols=266 Identities=24% Similarity=0.352 Sum_probs=230.4
Q ss_pred ccccccccChhhhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCCCccceeccCCCCceeeEecCH
Q psy8372 333 KHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGGAREFVVPTHEPNKFYSLVQSP 404 (883)
Q Consensus 333 ~~r~ldlr~~~~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~ga~~f~v~~~~~~~~~~L~~Sp 404 (883)
+|||||+|++ +++++++|+.|++++|+|| .++||+||+||+|+.+ .++||+.|.+++. ++.++|++||
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f-~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~~~--~~~~~L~~Sp 76 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIY--GVKMRLTHSM 76 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHH-HHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEET--TEEEEECSCS
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHH-HHCCCEEEECCEEEEccchhccCCCCCcceeEEEEcC--CCCEEeccCh
Confidence 5899999999 9999999999999999999 6899999999999998 7788888988754 5788999999
Q ss_pred HHHHHHHHccCCCcEEEEeeceecCC--CCCCCC-cceecccccccCCCHHHHHHHHHHHHHHHhccC--------C--C
Q psy8372 405 QQLKQLLMVGSVDRYFQIARCYRDES--TRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP--------T--R 471 (883)
Q Consensus 405 ql~kq~l~~~~~~rvf~I~~~FR~E~--~~~~r~-~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~--------~--~ 471 (883)
|+|+|++++++++|||+||||||+|+ +++.|| |||||+|+|++|.|++|+|+++|+|+++++..+ + .
T Consensus 77 e~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~ 156 (294)
T 1nnh_A 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK 156 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCS
T ss_pred HHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Confidence 99999999999999999999999999 876555 899999999999999999999999999998532 1 2
Q ss_pred CceeeehHHHHHHhCCCCCCccccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccchh
Q psy8372 472 TFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYF 551 (883)
Q Consensus 472 ~f~rity~ea~~~yg~~~~d~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (883)
+|+|+||.||++.||. . .
T Consensus 157 ~~~r~~y~ea~~~~g~------------~--------------------------------~------------------ 174 (294)
T 1nnh_A 157 RFEVFEYSEVLEEFGS------------D--------------------------------E------------------ 174 (294)
T ss_dssp SCEEEEHHHHHHHTSS------------H--------------------------------H------------------
T ss_pred CceEeEHHHHHHHhCC------------h--------------------------------H------------------
Confidence 3788888887765432 0 0
Q ss_pred hhhhccCCCCCCccccchhhhhcccccccchhhhhccccceeEEeeeccccccccCcccccCCCccceeeeecCCccccc
Q psy8372 552 IREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRILILPKDLDST 631 (883)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (883)
T Consensus 175 -------------------------------------------------------------------------------- 174 (294)
T 1nnh_A 175 -------------------------------------------------------------------------------- 174 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHhcCCCcceEEEecCcccccccccccCChhhHHHHHHHcCCCCCcEEEEecCCchhhHhHHHHHHHHh
Q psy8372 632 NKKITEYKNLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIRSES 711 (883)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~lg~lr~~~ 711 (883)
.+ +
T Consensus 175 ---------------------------------------------------------------------er--~------ 177 (294)
T 1nnh_A 175 ---------------------------------------------------------------------KA--S------ 177 (294)
T ss_dssp ---------------------------------------------------------------------HH--H------
T ss_pred ---------------------------------------------------------------------hh--h------
Confidence 00 0
Q ss_pred hhhcccccCCcccCCCCCccEEEEEecCCCCCCCCCCccccccCcCCCCCCChhhhccCCCCccceeeEEEec-Ce-EEe
Q psy8372 712 HKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLN-GN-EIG 789 (883)
Q Consensus 712 ~~~~~~~~l~~~l~~~~~~~f~wV~dfPl~~~~~~~~~~~~h~PFt~p~~~d~~~~~~~~~~~~~~~~Dlv~~-G~-Ei~ 789 (883)
+ .+. .++||+||| +||+++. |+.+ +.+|||+++ |+ ||+
T Consensus 178 ------~----~~~-----~P~~v~~~P--------------~pf~~~~--d~~~---------~~~~Dl~~~~g~~Ei~ 217 (294)
T 1nnh_A 178 ------Q----EME-----EPFWIINIP--------------REFYDRE--VDGF---------WRNYDLILPYGYGEVA 217 (294)
T ss_dssp ------H----HCS-----SCEEEECCC--------------CCTTBCE--ETTE---------ECEEEEEETTTTEEEE
T ss_pred ------h----hcC-----CCEEEEcCC--------------hHHhCCC--CCCe---------EEEEEEEECCCcEEEe
Confidence 0 011 248999999 4888874 3322 589999999 98 999
Q ss_pred eeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCC-CCcceeccHHHHHHHHhCCCCccccccCCCCCCC
Q psy8372 790 GGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCP-PHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGG 861 (883)
Q Consensus 790 ~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~p-PhgG~glGldRlvm~l~~~~sIRdvi~FPk~~~~ 861 (883)
|||+|+|||++|.++|+..|++++.|+|||+|++||+| ||||||||||||+|+++|++||||||+|||+++-
T Consensus 218 ~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~ 290 (294)
T 1nnh_A 218 SGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp EEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred cCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999998753
No 18
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.85 E-value=4.4e-21 Score=201.96 Aligned_cols=208 Identities=39% Similarity=0.689 Sum_probs=164.0
Q ss_pred CCchhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC
Q psy8372 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158 (883)
Q Consensus 79 ~~~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~ 158 (883)
......||+...+||+......+....+|......+......++..+........++.+|||||||+|.++..++..+..
T Consensus 24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 24 IEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp CSCHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred ccccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 34567899999999999988888777777665556666777888877654333346789999999999999987777765
Q ss_pred eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEE
Q psy8372 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 159 ~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~l 238 (883)
+|+|+|+|+.|++.|+++.......++.++..|+.++.... ++||+|++..+++|+++++...++++++++|||||++
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 181 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGII 181 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCC--CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 89999999999999999887653345678999988776543 6899999999999998866779999999999999999
Q ss_pred EEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccc
Q psy8372 239 IIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMD 289 (883)
Q Consensus 239 vi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~e 289 (883)
++.++.... ...+........++..++.++++++||+++.......+|..
T Consensus 182 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~ 231 (241)
T 2ex4_A 182 VIKDNMAQE-GVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPDE 231 (241)
T ss_dssp EEEEEEBSS-SEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCTT
T ss_pred EEEEccCCC-cceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcch
Confidence 998876544 22233344455568889999999999999988777666543
No 19
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.83 E-value=3.7e-20 Score=195.55 Aligned_cols=197 Identities=37% Similarity=0.617 Sum_probs=155.2
Q ss_pred HHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEE
Q psy8372 84 SHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLL 163 (883)
Q Consensus 84 ~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gv 163 (883)
.||....+||+......+....++.............++..+. ..++.+|||||||+|.++..++..+..+|+|+
T Consensus 48 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v 122 (254)
T 1xtp_A 48 GWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGIGRITKNLLTKLYATTDLL 122 (254)
T ss_dssp CHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTST-----TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEE
T ss_pred hhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhc-----ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEE
Confidence 5889999999998888877777666555555555555555542 24678999999999999998888876679999
Q ss_pred eCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 164 EQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 164 D~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+|+.|++.|+++.... ..+.+++.|+.+++... ++||+|++..+++|++++++..++++++++|||||++++.++
T Consensus 123 D~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 123 EPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCC--CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999987643 45688999988765433 689999999999999877789999999999999999999987
Q ss_pred ccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCCccc
Q psy8372 244 VASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMD 289 (883)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~P~e 289 (883)
.................++..++.++++++||+++.......+|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~ 244 (254)
T 1xtp_A 199 CSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTD 244 (254)
T ss_dssp BC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTCCTT
T ss_pred CCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCCCCch
Confidence 5443333333344455668889999999999999988776666544
No 20
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.80 E-value=1.2e-20 Score=205.03 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=129.3
Q ss_pred CCCCCcccccccccccceEEEEeeeeeecccCCCCCccccccCccchhhhcccccccccChhhhHHHHH-----HHHHHH
Q psy8372 282 KGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRF-----RSKFLM 356 (883)
Q Consensus 282 ~~~~~P~el~~~~~~~~iEI~~e~i~vl~k~~~~lP~~~~~~~~~~~~~rl~~r~ldlr~~~~~~~l~~-----rs~i~~ 356 (883)
.+...|+..-.....+++||.++++++++++..++|+.+++. ..++++||||+|++.++++++. ++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~-----~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~ 84 (290)
T 3qtc_A 10 HGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKP-----FRELESELLSRRKKDLQQIYAEERENYLGKLER 84 (290)
T ss_dssp --------------CCCCHHHHHHHHHHCCTTCC----CCSC-----HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred cCCcccCCccccCCCceEEEEhhhhhhhccCCCCCCCCcchh-----hhhhhhHHHHhccchHHHHhccccccHHHHHHH
Confidence 344456555556667899999999999999988899887542 3489999999999999999999 999999
Q ss_pred HHHHHHhcCCCeEEEcCCeeccCCC-------CCCccceeccCCCCceeeEe--cCHHHHHHHHHc----cCCCcEEEEe
Q psy8372 357 RTREFLATHRDFVEVETPTLFKRTP-------GGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMV----GSVDRYFQIA 423 (883)
Q Consensus 357 ~iR~f~~~~~gF~EV~TP~l~~~~~-------~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~----~~~~rvf~I~ 423 (883)
.+|++| .++||.||.||+|+++.. .++..+.. .+..+..++|+ +|||+++++.+. .+..|+||||
T Consensus 85 ~ir~~l-~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG 162 (290)
T 3qtc_A 85 EITRFF-VDRGFLEIKSPILIPLEYIERMGIDNDTELSKQ-IFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIG 162 (290)
T ss_dssp HHHHHH-HHTTCEEECCCSEEETHHHHHTTCCTTSSGGGG-CCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEE
T ss_pred HHHHHH-HHCCCEEEECCceeeHHHHHhcCCCcCCchhhh-heeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEc
Confidence 999999 689999999999987532 11111110 11113568999 999999887653 4457999999
Q ss_pred eceecCCCCCCCCcceecccccccCCC--HHHHHHHHHHHHHHH
Q psy8372 424 RCYRDESTRPDRQPEFTQLDIELSFTT--RDDVMRLIEELLCYC 465 (883)
Q Consensus 424 ~~FR~E~~~~~r~~EFt~le~e~~~~~--~~dvm~~~E~li~~i 465 (883)
+|||+|..+.+|.+||||+|+++++.+ +.++..+++++++.+
T Consensus 163 ~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 163 PCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 999999888888899999999999975 888888888887654
No 21
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.75 E-value=8e-17 Score=170.68 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-----CCCeEEEcCCeeccCCCC------C-CccceeccC-CCCceeeEecCHHHHHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLAT-----HRDFVEVETPTLFKRTPG------G-AREFVVPTH-EPNKFYSLVQSPQQLKQLLM 412 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~-----~~gF~EV~TP~l~~~~~~------g-a~~f~v~~~-~~~~~~~L~~Spql~kq~l~ 412 (883)
..++-....+..+++|| . +.|+++|..|+++..+.| | .++..++.. .++..+-+.+|...+|++++
T Consensus 3 ~~~~~tq~aI~~iK~~f-~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL 81 (330)
T 12as_A 3 TAYIAKQRQISFVKSHF-SRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTL 81 (330)
T ss_dssp -CHHHHHHHHHHHHHHH-HHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHH
Confidence 44667778888899998 6 689999999999875322 2 223222222 23677889999999999876
Q ss_pred c-cCC---CcEEEEeeceecC-C-CCCCCCcceecccccccCCCHHHHHHHHHHHHHHHhccC
Q psy8372 413 V-GSV---DRYFQIARCYRDE-S-TRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCLNIP 469 (883)
Q Consensus 413 ~-~~~---~rvf~I~~~FR~E-~-~~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i~~~~ 469 (883)
. .+| +.+|+-+++.|.+ + .++.|.-+|+|.|||......+..|+.++++++.|+..+
T Consensus 82 ~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~i 144 (330)
T 12as_A 82 GQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGI 144 (330)
T ss_dssp HHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHH
Confidence 5 347 8999999999984 4 466666999999999999999999999999988887664
No 22
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.74 E-value=1.6e-17 Score=169.64 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=117.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++++|+.+++... ++||+|++..+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP-----SVTFHHGTITDLSDSP--KRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT-----TSEEECCCGGGGGGSC--CCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC-----CCeEEeCcccccccCC--CCeEEEEehhhHh
Confidence 67999999999999998888866 59999999999999998743 4578999988865433 7899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
|++.+++..++++++++|||||.+++.++..................+..++.++++++||+++........
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 114 HMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp TCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 998667899999999999999999999876654332222333344557889999999999999987665443
No 23
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.70 E-value=7.4e-17 Score=172.72 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=111.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+++.+|||||||+|..+..++.... .+|+|+|+|+.|++.|++++.... ..+++++++|+.+++. +.||+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----~~~d~v~ 144 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMVV 144 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----CSEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----cccccce
Confidence 5788999999999999988877632 179999999999999999987653 3467899999988754 3699999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc----------------ccCC----------ccccccc
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------------YDDE----------DSSVVRS 262 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~----------------~~~~----------~~~~~~s 262 (883)
++.++||+++++...++++++++|||||.|++.+......... +... ......+
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 9999999998778899999999999999999988654332100 0000 0011235
Q ss_pred chhhhhhhhhcccccccc
Q psy8372 263 LPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~ 280 (883)
.+++.++|+++||+.+..
T Consensus 225 ~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 225 VETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 667888899999987654
No 24
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.70 E-value=7.4e-17 Score=166.62 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~ 197 (883)
...++..+.. .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.. .+++++.+|+.+++.
T Consensus 34 ~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~ 103 (220)
T 3hnr_A 34 YEDILEDVVN-----KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV 103 (220)
T ss_dssp HHHHHHHHHH-----TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC
T ss_pred HHHHHHHhhc-----cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC
Confidence 3445555543 3677999999999999998888755 69999999999999998865 356889999988754
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------c---------cCCccccccc
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------Y---------DDEDSSVVRS 262 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~---------~~~~~~~~~s 262 (883)
. ++||+|++..+++|+++.+...++++++++|||||.+++.++........ + .......+.+
T Consensus 104 ~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (220)
T 3hnr_A 104 P---TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTR 180 (220)
T ss_dssp C---SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCB
T ss_pred C---CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCC
Confidence 3 58999999999999988555569999999999999999998654332110 0 0011123447
Q ss_pred chhhhhhhhhcccccccccCC
Q psy8372 263 LPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~~~~ 283 (883)
.+++..+++++||+++.....
T Consensus 181 ~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 181 IPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEeecc
Confidence 789999999999998876654
No 25
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.70 E-value=9.4e-17 Score=167.58 Aligned_cols=147 Identities=24% Similarity=0.294 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|+++..... +++++++|+.++++. ++||+|++.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---~~fD~v~~~ 116 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---EKYDMVVSA 116 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---SCEEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---CCceEEEEe
Confidence 35678999999999999998888753 379999999999999999876543 678999999887654 589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------------------------cccCCcccccccchh
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------------------------EYDDEDSSVVRSLPQ 265 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~ 265 (883)
.+++|+++++...++++++++|||||.+++.++....... .+.........+.++
T Consensus 117 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 117 LSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 9999998766668999999999999999999866433210 001112233346779
Q ss_pred hhhhhhhcccccccccCC
Q psy8372 266 FCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~~~ 283 (883)
+.++++++||+.+.....
T Consensus 197 ~~~ll~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIYK 214 (234)
T ss_dssp HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHcCCCceeeeee
Confidence 999999999999876543
No 26
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.69 E-value=1.4e-16 Score=163.73 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++. .+.+..+|+.+++. +++||+|++..+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---~~~fD~v~~~~~ 111 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---IDAYDAVWAHAC 111 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---CSCEEEEEECSC
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---CCcEEEEEecCc
Confidence 4678999999999999998888765 6999999999999999986 23578888887762 369999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc-cccccccCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN-LKCVKSEKG 283 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG-f~vv~~~~~ 283 (883)
++|++++++..++++++++|||||++++............ ........+.+++.++++++| |+++.....
T Consensus 112 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 112 LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 9999877799999999999999999999876544321111 112223457889999999999 999876543
No 27
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.68 E-value=1.7e-16 Score=163.08 Aligned_cols=145 Identities=10% Similarity=-0.003 Sum_probs=110.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc------------cCCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD------------CDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 200 (883)
+++.+|||+|||+|..+..++..|+ +|+|+|+|+.|++.|+++.... ....++++++|+.++++..
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~- 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD- 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc-
Confidence 4678999999999999999988876 5999999999999999886431 1346789999999876431
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+|++..+++|++.++...++++++++|||||++++........ ......+..+.+++.+++.+ ||+++..
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----LLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----SSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----ccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 148999999999999988777889999999999999855544332211 01111223467899999998 9988765
Q ss_pred cCCC
Q psy8372 281 EKGE 284 (883)
Q Consensus 281 ~~~~ 284 (883)
....
T Consensus 174 ~~~~ 177 (203)
T 1pjz_A 174 GGQD 177 (203)
T ss_dssp EESS
T ss_pred cccc
Confidence 4433
No 28
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.68 E-value=2.1e-16 Score=171.22 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=114.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++....+. .++++..+|+.+++... ++||+|++.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 157 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED--NSYDFIWSQ 157 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT--TCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCC--CCEeEEEec
Confidence 357789999999999999988876333699999999999999998876543 45789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+++|+++ +..++++++++|||||++++.++....... .+.........+..++.++++++||+++...
T Consensus 158 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 158 DAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred chhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999977 889999999999999999999876443211 0001111123467789999999999987554
No 29
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.67 E-value=4.9e-16 Score=165.96 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+. .++.+..+|+.+++... ++||+|++.
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 136 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED--ASFDAVWAL 136 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT--TCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC--CCccEEEEe
Confidence 356789999999999999988876545799999999999999998876543 35789999998865433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc---------cCCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------DDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+++ +..++++++++|||||++++.++......... .........+..++.++++++||+++..
T Consensus 137 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 213 (273)
T 3bus_A 137 ESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213 (273)
T ss_dssp SCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 99999976 78999999999999999999987644321100 0111223456788999999999987643
No 30
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.67 E-value=5.6e-16 Score=167.07 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=116.8
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKP 197 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~ 197 (883)
...+..+... ....++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+. ..+.+...|+.+++
T Consensus 50 ~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 127 (287)
T 1kpg_A 50 IAKIDLALGK-LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 127 (287)
T ss_dssp HHHHHHHHTT-TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHH-cCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 3344444332 23356789999999999999988844334799999999999999998876533 46788899987654
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------------------CCccc
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------------------DEDSS 258 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------------------~~~~~ 258 (883)
++||+|++..+++|++++++..++++++++|||||.+++.++.......... .....
T Consensus 128 ----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (287)
T 1kpg_A 128 ----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG 203 (287)
T ss_dssp ----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC
T ss_pred ----CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCC
Confidence 5899999999999997666889999999999999999999876543211000 01112
Q ss_pred ccccchhhhhhhhhccccccccc
Q psy8372 259 VVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 259 ~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
...+..++.++++++||+++...
T Consensus 204 ~~~s~~~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 204 RLPSIPMVQECASANGFTVTRVQ 226 (287)
T ss_dssp CCCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEEEE
Confidence 33467788999999999886543
No 31
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.67 E-value=3e-16 Score=164.28 Aligned_cols=141 Identities=19% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||||||+|.++..++..+. +|+|+|+|+.+++.|+++.. ...+.++++|+.+++... ++||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFEN--EQFEAIMAINS 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCT--TCEEEEEEESC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCC--CCccEEEEcCh
Confidence 4678999999999999998888865 69999999999999998752 345688999998876433 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++|+++ +..++++++++|||||++++.++....... .+.........+..++..+++++||+++...
T Consensus 126 l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 126 LEWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp TTSSSC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HhhccC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 999976 789999999999999999999865432211 1112222333567799999999999998654
No 32
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.67 E-value=3.1e-16 Score=166.59 Aligned_cols=143 Identities=14% Similarity=0.193 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+..++.+..+|+.+++... ++||+|++..+
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~--~~fD~V~~~~~ 112 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD--ERFHIVTCRIA 112 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC--CCEEEEEEhhh
Confidence 4678999999999999987777765 79999999999999999987665556789999998876443 69999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||++++.++....... ...........+..++.++++++||+++..
T Consensus 113 l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 113 AHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred hHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 999976 789999999999999999998765432210 001111223346778999999999987643
No 33
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.66 E-value=4.8e-16 Score=164.30 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++.. ...+.++++|+.+++... ++||+|++..+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 117 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEP--DAYNVVLSSLA 117 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCT--TCEEEEEEESC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCC--CCeEEEEEchh
Confidence 4678999999999999998888877689999999999999999875 345688999998776433 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-----cc---------------ccC----------Cccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-----NE---------------YDD----------EDSSVVRS 262 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-----~~---------------~~~----------~~~~~~~s 262 (883)
++|+++ +..++++++++|||||.+++..+...... .. +.. ....+.++
T Consensus 118 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 118 LHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCC
T ss_pred hhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecC
Confidence 999966 88999999999999999999865421000 00 000 01112237
Q ss_pred chhhhhhhhhcccccccccCCC
Q psy8372 263 LPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 263 ~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
..++.++++++||+++......
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHcCCeeeeeecCC
Confidence 8899999999999998776554
No 34
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.66 E-value=1.4e-16 Score=166.77 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++... .++++++|+.++.+ +++||+|++..++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~---~~~fD~v~~~~~l 113 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL---PRRYDNIVLTHVL 113 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC---SSCEEEEEEESCG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc---CCcccEEEEhhHH
Confidence 567999999999999998877766 599999999999999988653 56889999887732 3689999999999
Q ss_pred cccChHHHHHHHHHHH-HHhccCcEEEEEecccCCCcc-------ccc----------CCcccccccchhhhhhhhhccc
Q psy8372 214 MFILDEDIIKFLNLCK-QILNKNGIIIIKDNVASGVKN-------EYD----------DEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~-r~LKPGG~lvi~~~~~~~~~~-------~~~----------~~~~~~~~s~~~~~~l~~~aGf 275 (883)
+|+++ +..++++++ ++|||||++++.++....... .+. ...+....+..++.++++++||
T Consensus 114 ~~~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 114 EHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp GGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HhhcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 99976 789999999 999999999999876543210 000 1112234477899999999999
Q ss_pred cccccc
Q psy8372 276 KCVKSE 281 (883)
Q Consensus 276 ~vv~~~ 281 (883)
+++...
T Consensus 192 ~~~~~~ 197 (250)
T 2p7i_A 192 QVTYRS 197 (250)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 987554
No 35
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.66 E-value=7.7e-16 Score=162.72 Aligned_cols=143 Identities=20% Similarity=0.131 Sum_probs=114.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+. .++++.++|+.++++ +++||+|+|..
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~V~~~~ 111 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---NEKCDVAACVG 111 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---SSCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---CCCCCEEEECC
Confidence 56789999999999999988877544799999999999999999876543 367899999988765 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+++|+++ +..++++++++|||||++++.++....... .+.........+..++.++++++||+++..
T Consensus 112 ~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 112 ATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp CGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred ChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 9999976 789999999999999999998865432211 011112223456789999999999997653
No 36
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.66 E-value=6.4e-16 Score=164.93 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=113.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++....+. .+++++.+|+.+++... ++||+|++.
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~i~~~ 121 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN--EELDLIWSE 121 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--TCEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC--CCEEEEEEc
Confidence 357889999999999999988877554899999999999999999876643 45789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-----CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+ + +..++++++++|||||++++.++.......... ........+..++.++++++||+++..
T Consensus 122 ~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 122 GAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp SCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred CCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 999999 4 678999999999999999999875332211000 001112346778999999999998754
No 37
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.66 E-value=6.8e-16 Score=163.25 Aligned_cols=144 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|++++...+.. +++++++|+.+++... ++||+|++.
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 121 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN--EELDLIWSE 121 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT--TCEEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC--CCEEEEEec
Confidence 3567899999999999999888887658999999999999999998876543 4789999998776443 799999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--cc---CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YD---DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+++|+ + +..++++++++|||||++++.++.+...... .. ........+..++.++++++||+++..
T Consensus 122 ~~l~~~-~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 122 GAIYNI-G--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp SCSCCC-C--HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred ChHhhc-C--HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 999999 4 6789999999999999999998653322100 00 000112346789999999999998763
No 38
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.65 E-value=5.7e-16 Score=159.16 Aligned_cols=141 Identities=16% Similarity=0.251 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++ ....+++++++|+.++ .. +++||+|++..+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~--~~~~D~v~~~~~ 116 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TP--DRQWDAVFFAHW 116 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CC--SSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CC--CCceeEEEEech
Confidence 5667999999999999998888865 69999999999999988 2334578999999887 22 369999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc----------CCccc------ccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD----------DEDSS------VVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~----------~~~~~------~~~s~~~~~~l~~~aG 274 (883)
++|+++++...++++++++|||||.+++.++...... ..+. ..... .+.+..++.++++++|
T Consensus 117 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 196 (218)
T 3ou2_A 117 LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG 196 (218)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCC
Confidence 9999886678999999999999999999987653211 0000 00111 1347789999999999
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|++....
T Consensus 197 f~v~~~~ 203 (218)
T 3ou2_A 197 WSCSVDE 203 (218)
T ss_dssp EEEEEEE
T ss_pred CEEEeee
Confidence 9965443
No 39
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.65 E-value=1.4e-15 Score=157.26 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=113.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-----CccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-----LDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|++++...... .++++++|+...+... ++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~ 105 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF--SGYDA 105 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG--TTCSE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc--CCCCE
Confidence 3567999999999999998877665 38999999999999999988654332 5688999986554333 68999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccCCcccccccchhhh----hhhhhcccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDDEDSSVVRSLPQFC----LLFSKANLK 276 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~~~~~~~~s~~~~~----~l~~~aGf~ 276 (883)
|+|..+++|+++++...++++++++|||||.+++.......... .+...++....+..++. .+++++||+
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 99999999998766789999999999999976666543221111 11112233334666777 889999998
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
+.....+...
T Consensus 186 v~~~~~g~~~ 195 (219)
T 3jwg_A 186 VRFLQIGEID 195 (219)
T ss_dssp EEEEEESCCC
T ss_pred EEEEecCCcc
Confidence 8776555443
No 40
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.65 E-value=1.1e-15 Score=157.57 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=117.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ . .+|+|+|+|+.+++.|+++.......++++..+|+.+++... ++||+|++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~ 113 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD--NTVDFIFMA 113 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS--SCEEEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC--CCeeEEEee
Confidence 467899999999999999888876 2 379999999999999999987766557789999998876443 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++|+++ +..++++++++|||||.+++.++...... .........+..++..+++++||+++....
T Consensus 114 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 114 FTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERD---KGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp SCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCS---SSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccc---cCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 99999976 78999999999999999999986654331 112223344778999999999999887643
No 41
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.65 E-value=1.4e-15 Score=157.06 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-----CccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-----LDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...... +++++++|+...... .++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~ 105 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR--FHGYDA 105 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG--GCSCSE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc--CCCcCE
Confidence 3567999999999999998887765 38999999999999999998654332 578899998654433 268999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------ccccCCcccccccchhhh----hhhhhcccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYDDEDSSVVRSLPQFC----LLFSKANLK 276 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~~~~~~~~~s~~~~~----~l~~~aGf~ 276 (883)
|++..+++|+++++...++++++++|||||.+++......... ..+...++....+..++. .+++++||+
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~ 185 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYN 185 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEE
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCce
Confidence 9999999999876678999999999999997777665321100 011122333334677777 899999999
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
+.....+...
T Consensus 186 v~~~~~g~~~ 195 (217)
T 3jwh_A 186 VQFQPIGEAD 195 (217)
T ss_dssp EEECCCSCCC
T ss_pred EEEEecCCcc
Confidence 9877666544
No 42
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.65 E-value=9.9e-16 Score=166.72 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=113.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++....+.. ++++..+|+.++ +++||+|++.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD~v~~~ 144 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DEPVDRIVSL 144 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CCCCSEEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CCCccEEEEc
Confidence 3577899999999999999888872357999999999999999998876443 678999998876 2689999999
Q ss_pred ccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------------------CCcccccccch
Q psy8372 211 WVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------------------DEDSSVVRSLP 264 (883)
Q Consensus 211 ~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------------------~~~~~~~~s~~ 264 (883)
.+++|+++ ++...++++++++|||||++++.+........... ...+....+..
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~ 224 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRIS 224 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHH
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHH
Confidence 99999944 45689999999999999999999876543211000 11222445677
Q ss_pred hhhhhhhhcccccccc
Q psy8372 265 QFCLLFSKANLKCVKS 280 (883)
Q Consensus 265 ~~~~l~~~aGf~vv~~ 280 (883)
++.++++++||+++..
T Consensus 225 ~~~~~l~~aGf~~~~~ 240 (302)
T 3hem_A 225 QVDYYSSNAGWKVERY 240 (302)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhCCcEEEEE
Confidence 8999999999987654
No 43
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.65 E-value=6.5e-16 Score=166.50 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=113.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...+. .+++++++|+.+++... +++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL-ETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC-SSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc-CCCceEEEECch
Confidence 467999999999999998888755 699999999999999999876544 46789999998876222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc----------cc--------ccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK----------NE--------YDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~----------~~--------~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
++|+++ +..++++++++|||||.+++.++...... .. ..........+..++..+++++|
T Consensus 146 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 223 (285)
T 4htf_A 146 LEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAG 223 (285)
T ss_dssp GGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTT
T ss_pred hhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCC
Confidence 999976 78999999999999999999886532210 00 00112223457789999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|+++....
T Consensus 224 f~v~~~~~ 231 (285)
T 4htf_A 224 WQIMGKTG 231 (285)
T ss_dssp CEEEEEEE
T ss_pred Cceeeeee
Confidence 99875543
No 44
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.65 E-value=5.1e-16 Score=163.08 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||||||+|.++..++..+.. |+|+|+|+.+++.|+++ ++++.+|+.+......+++||+|+|..+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~-v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIE-SIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCC-EEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCc-EEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 56789999999999999988888765 99999999999999876 3677888766421111368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---cccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---EYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++++...++++++++|||||++++.++....... .+....+....+..++..+++++||+++..
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99998766899999999999999999999876543211 111223334456789999999999997644
No 45
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.64 E-value=7.3e-16 Score=163.34 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=115.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
..++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++.... .+++++..|+.+.+... ++||+|++..
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~--~~fD~v~~~~ 128 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPE--NNFDLIYSRD 128 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCT--TCEEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCC--CcEEEEeHHH
Confidence 3567899999999999999888874347999999999999999887644 56789999998875433 7999999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc------cCCcccccccchhhhhhhhhccccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY------DDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~------~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+++|++.+++..++++++++|||||.+++.++......... ....+....+..++.++++++||+++...
T Consensus 129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 99999766799999999999999999999987654311100 01112234477899999999999886543
No 46
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.64 E-value=1.1e-15 Score=160.57 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+..++.+..+|+.+++... ++||+|++..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD--DSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC--CcEEEEEECCc
Confidence 5778999999999999988777764 69999999999999999987766566789999998865433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------ccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
++|+++ +..++++++++|||||++++.+......... .....+....+..+|.++++++||+++..
T Consensus 97 l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 97 AHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171 (239)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence 999976 7899999999999999999988654332100 00112223346778999999999987643
No 47
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.64 E-value=2.4e-15 Score=164.83 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=118.7
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK 196 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~ 196 (883)
...+..+... ....++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.|+++....+. ..+++..+|+.+++
T Consensus 76 ~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 153 (318)
T 2fk8_A 76 YAKVDLNLDK-LDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA 153 (318)
T ss_dssp HHHHHHHHTT-SCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred HHHHHHHHHh-cCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC
Confidence 3344444332 23356789999999999999988877 54 699999999999999999876543 34688899987653
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----------------cc--CCcc
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----------------YD--DEDS 257 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----------------~~--~~~~ 257 (883)
++||+|++..+++|++++++..+++++.++|||||.+++.++........ .. ....
T Consensus 154 -----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
T 2fk8_A 154 -----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG 228 (318)
T ss_dssp -----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred -----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCC
Confidence 58999999999999976678999999999999999999998775442110 00 0112
Q ss_pred cccccchhhhhhhhhccccccccc
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
....+.+++.++++++||+++...
T Consensus 229 ~~~~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 229 GRLPSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp CCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred CcCCCHHHHHHHHHhCCCEEEEEE
Confidence 234477899999999999987543
No 48
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.64 E-value=3.5e-16 Score=167.22 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=108.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-----------------------------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK----------------------------- 183 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~----------------------------- 183 (883)
.++.+|||||||+|.++..++..++.+|+|+|+|+.|++.|++++......
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 467899999999998887666777768999999999999999876532100
Q ss_pred Cc-cEEEccCCCCCCCc--CCCCccEEEEcccccccC-h-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-c
Q psy8372 184 LD-KCYNVGIQDFKPED--LNIKYDVIWIQWVLMFIL-D-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-S 257 (883)
Q Consensus 184 ~~-~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~-d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~ 257 (883)
.+ .++++|+.+..+.. ..++||+|+++.+|||+. + +++..++++++++|||||+|++.+...... +...... .
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-~~~g~~~~~ 212 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-YMVGKREFS 212 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEETTEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-ceeCCeEee
Confidence 11 27888888743311 135899999999999963 2 567899999999999999999997543221 1101111 1
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+++.+++.++||+++....
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEee
Confidence 1233677999999999999886654
No 49
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.64 E-value=1.1e-15 Score=163.60 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=118.0
Q ss_pred HHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC
Q psy8372 122 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 122 L~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 200 (883)
+..++.......++.+|||||||+|.++..++..+.. +|+|+|+|+.+++.|+++.......++++...|+.+++...
T Consensus 25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~- 103 (276)
T 3mgg_A 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFED- 103 (276)
T ss_dssp HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCT-
T ss_pred HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCC-
Confidence 3333333334467889999999999999988888533 89999999999999999988776667889999998876543
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc---------------cCCcccccccchh
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY---------------DDEDSSVVRSLPQ 265 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~---------------~~~~~~~~~s~~~ 265 (883)
++||+|++..+++|+++ +..++++++++|||||++++.++......... .........+..+
T Consensus 104 -~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (276)
T 3mgg_A 104 -SSFDHIFVCFVLEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQ 180 (276)
T ss_dssp -TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGG
T ss_pred -CCeeEEEEechhhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 79999999999999977 77999999999999999999886532211000 0011122235568
Q ss_pred hhhhhhhccccccccc
Q psy8372 266 FCLLFSKANLKCVKSE 281 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~ 281 (883)
+..+++++||+++..+
T Consensus 181 l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 181 IYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCeEEEe
Confidence 8889999999876443
No 50
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.62 E-value=1.2e-15 Score=159.59 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
+.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.... ...+++++++|+.++.+. ++||+|++..++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~~~~l 142 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---ELFDLIFDYVFF 142 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---SCEEEEEEESST
T ss_pred CCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---CCeeEEEEChhh
Confidence 45999999999999987766544 6999999999999999988753 234568999999886643 489999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+|+++++...++++++++|||||++++.+....... ....+..+..++..+++++||+++..+..
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV-----GGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC-----SCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC-----CCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 999876799999999999999999999886543221 11123357789999999999999876543
No 51
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.61 E-value=2e-15 Score=160.73 Aligned_cols=142 Identities=17% Similarity=0.079 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-----------------ccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-----------------DCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-----------------~~~~~~~~~~~d~~~~ 195 (883)
.++.+|||+|||+|..+..++..|+ +|+|||+|+.|++.|+++... .....++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 3678999999999999999988887 599999999999999877641 1124578999999887
Q ss_pred CCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
++.. .++||+|++..+++|++.++...++++++++|||||++++.+....... . ....+..+.+++.++|.. +|
T Consensus 146 ~~~~-~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~--~--~g~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 146 PRAN-IGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK--H--AGPPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGC-CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS--C--CCSSCCCCHHHHHHHHTT-TE
T ss_pred Cccc-CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc--C--CCCCCCCCHHHHHHHhhC-Ce
Confidence 6532 2689999999999999887788999999999999999976554322110 1 111222467788899887 48
Q ss_pred cccccc
Q psy8372 276 KCVKSE 281 (883)
Q Consensus 276 ~vv~~~ 281 (883)
+++...
T Consensus 220 ~v~~~~ 225 (252)
T 2gb4_A 220 SMQCLE 225 (252)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 876554
No 52
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.61 E-value=8.2e-16 Score=157.71 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=110.5
Q ss_pred eEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 137 rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++..... .+++++++|+.+++... ++||+|++..+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED--NYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT--TCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc--ccccEEEECchHhh
Confidence 9999999999999988887333799999999999999999877643 36789999998866443 68999999999999
Q ss_pred cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----cccC--C-------cccccccchhhhhhhhhccccccccc
Q psy8372 216 ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----EYDD--E-------DSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 216 l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----~~~~--~-------~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+++ +..++++++++|||||.+++.+........ .+.. . ......+.+++.++++++||+.+...
T Consensus 124 ~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 124 WED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred ccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 966 889999999999999999998755332110 0000 0 11223366899999999999987654
No 53
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.61 E-value=1.2e-15 Score=162.29 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
+++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++++|+.+++. +++||+|+|..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~fD~v~~~~~ 119 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL---GRRFSAVTCMFS 119 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC---SCCEEEEEECTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc---cCCcCEEEEcCc
Confidence 3568999999999999998877765 69999999999999998864 45889999988765 36999999998
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++|+++ +++..++++++++|||||.+++.+.
T Consensus 120 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 120 SIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999965 5688999999999999999999754
No 54
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.60 E-value=5.4e-15 Score=150.63 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++ +|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...... .+.+.++|+.+.+... ++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~--~~fD~v~~~-- 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVA--DAWEGIVSI-- 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCT--TTCSEEEEE--
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCc--CCccEEEEE--
Confidence 355 999999999999988877765 699999999999999998876543 5678889988775433 689999995
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-CCcccccccchhhhhhhhhcccccccccCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-DEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+.|++.+++..++++++++|||||.+++.++.......... ........+..++.++++ ||+++.....
T Consensus 102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 45666567899999999999999999999876554322111 122344567889999999 9998875543
No 55
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.60 E-value=5.7e-15 Score=161.63 Aligned_cols=146 Identities=9% Similarity=0.040 Sum_probs=115.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+. .+++++.+|+.+++... ++||+|++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~V~~~ 192 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK--GAVTASWNN 192 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT--TCEEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC--CCEeEEEEC
Confidence 467889999999999999988887334699999999999999999887644 36789999998876433 699999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.+++|+ + +..++++++++|||||++++.++.......... ........+..++.++++++||+++....
T Consensus 193 ~~l~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 193 ESTMYV-D--LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp SCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred CchhhC-C--HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 999999 4 789999999999999999998876544221000 00011234678999999999999876543
No 56
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.59 E-value=4e-15 Score=154.49 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=114.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-----CCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-----KLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...... ..+.+...|+.+++... ++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHD--SSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCT--TCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCC--CceeEE
Confidence 4678999999999999998888855 699999999999999998876533 24578899988776433 789999
Q ss_pred EEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccc-----------------c-C-------Ccccccc
Q psy8372 208 WIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-----------------D-D-------EDSSVVR 261 (883)
Q Consensus 208 vs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~-----------------~-~-------~~~~~~~ 261 (883)
++..+++|+++ +....++++++++|||||++++.++........+ . . .......
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 99999999976 3355899999999999999999987543211000 0 0 0112345
Q ss_pred cchhhhhhhhhcccccccccC
Q psy8372 262 SLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 262 s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+.+++.++++++||+++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 788999999999999987654
No 57
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.59 E-value=3.9e-15 Score=160.00 Aligned_cols=137 Identities=12% Similarity=0.194 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++. ..+.+..+|+.+++. +++||+|++..+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~~~fD~v~~~~~ 126 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---DKPLDAVFSNAM 126 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---SSCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---CCCcCEEEEcch
Confidence 4678999999999999998887544 6999999999999999875 345789999988664 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------------c-cCCcccccccchhhhhhhhhccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------Y-DDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------------~-~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
++|+++ +..++++++++|||||++++..+........ . .........+..++..+++++||++
T Consensus 127 l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 204 (279)
T 3ccf_A 127 LHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204 (279)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred hhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEE
Confidence 999976 7899999999999999999988654331100 0 0011122346778889999999987
Q ss_pred ccc
Q psy8372 278 VKS 280 (883)
Q Consensus 278 v~~ 280 (883)
+..
T Consensus 205 ~~~ 207 (279)
T 3ccf_A 205 TYA 207 (279)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 58
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.59 E-value=1.2e-14 Score=147.06 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++........+.+..+|+.+.+. +++||+|++..++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---CCCceEEEEcchh
Confidence 567999999999999998888755 699999999999999998876655567899999988655 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|++.+++..++++++++|||||.+++.+........ .........+.+++.++|++ |+++....
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC--CCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 9998667899999999999999998887654332211 11222334577889999886 87776543
No 59
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.59 E-value=1.1e-14 Score=148.78 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|+++..... ..+.+.++|+.+++... ++||+|++..+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 98 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKD--ESMSFVYSYGT 98 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCT--TCEEEEEECSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCC--CceeEEEEcCh
Confidence 4578999999999997443444333369999999999999999877544 34688999998865433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------c---cCC--cccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------Y---DDE--DSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~---~~~--~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|++.+++..++++++++|||||.+++.++........ + ... ......+.+++..+|..+||...
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 999976779999999999999999999998764432210 0 000 11133466788899999998776
Q ss_pred cc
Q psy8372 279 KS 280 (883)
Q Consensus 279 ~~ 280 (883)
..
T Consensus 179 ~~ 180 (209)
T 2p8j_A 179 ED 180 (209)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 60
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.59 E-value=1.9e-15 Score=160.99 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++. ++++++.|+.+++... ++||+|++..+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 103 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD--KSVDGVISILA 103 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT--TCBSEEEEESC
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC--CCEeEEEEcch
Confidence 4678999999999999998877554 6999999999999886654 5688999998866443 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccccc--------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD--------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+++ +..++++++++|| ||.+++.++........+. ......+.+...+. +++++||+.+....
T Consensus 104 l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 104 IHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 999966 8899999999999 9999888876433221111 01112334556778 99999998775543
No 61
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.59 E-value=9.7e-15 Score=154.38 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++. .++.+..+|+.+++ . +++||+|++..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-~--~~~fD~v~~~~ 103 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK-P--AQKADLLYANA 103 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC-C--SSCEEEEEEES
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC-c--cCCcCEEEEeC
Confidence 467899999999999999888773 236999999999999999872 34688999998876 2 36899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc---------------ccccC--Ccccccccchhhhhhhhhcc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK---------------NEYDD--EDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~---------------~~~~~--~~~~~~~s~~~~~~l~~~aG 274 (883)
+++|+++ +..++++++++|||||.+++.++...... ..... .......+..++.++++++|
T Consensus 104 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (259)
T 2p35_A 104 VFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS 181 (259)
T ss_dssp CGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGE
T ss_pred chhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcC
Confidence 9999966 88999999999999999999886432210 00000 11223446778899999999
Q ss_pred ccc
Q psy8372 275 LKC 277 (883)
Q Consensus 275 f~v 277 (883)
|++
T Consensus 182 f~v 184 (259)
T 2p35_A 182 SRV 184 (259)
T ss_dssp EEE
T ss_pred Cce
Confidence 864
No 62
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.59 E-value=5.1e-15 Score=160.83 Aligned_cols=157 Identities=12% Similarity=0.188 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC---CCccEEEccC
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD---KLDKCYNVGI 192 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~---~~~~~~~~d~ 192 (883)
.....++..+. .++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+++++++|+
T Consensus 70 ~~~~~~~~~~~------~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 142 (299)
T 3g2m_A 70 SEAREFATRTG------PVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM 142 (299)
T ss_dssp HHHHHHHHHHC------CCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred HHHHHHHHhhC------CCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence 34445555552 2345999999999999998888765 599999999999999999876432 4568999999
Q ss_pred CCCCCCcCCCCccEEEEc-ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-------cc----------c-
Q psy8372 193 QDFKPEDLNIKYDVIWIQ-WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EY----------D- 253 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~-~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~----------~- 253 (883)
.+++. +++||+|+|. .+++|+++++...++++++++|||||+|++.++....... .+ .
T Consensus 143 ~~~~~---~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 219 (299)
T 3g2m_A 143 SAFAL---DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHV 219 (299)
T ss_dssp TBCCC---SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCE
T ss_pred hcCCc---CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEE
Confidence 98765 3699999864 7788887777899999999999999999998876432100 00 0
Q ss_pred -------------------------CCcccccccchhhhhhhhhcccccccccC
Q psy8372 254 -------------------------DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 254 -------------------------~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
......+.+.+++.++++++||+++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 273 (299)
T 3g2m_A 220 RHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273 (299)
T ss_dssp EEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence 00011134788999999999999987764
No 63
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.58 E-value=4.4e-15 Score=155.28 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-c
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-V 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~-v 212 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+.+.++|+.+++.. ++||+|++.. +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN---RKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS---CCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc---CCceEEEEcCcc
Confidence 678999999999999998877765 599999999999999998876543 568899998876543 5899999998 9
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcc----------------ccc----------------------
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKN----------------EYD---------------------- 253 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~----------------~~~---------------------- 253 (883)
++|+++ +++..++++++++|||||.+++..+....... .+.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 999953 56889999999999999999996654211000 000
Q ss_pred ----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 254 ----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 254 ----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
........+.+++.++++++||+++....
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 00012234788999999999999987654
No 64
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.58 E-value=4.6e-15 Score=157.08 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++. .....++.+..+|+.+++... ++||+|++..+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 113 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPD--ESVHGVIVVHL 113 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCT--TCEEEEEEESC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCC--CCeeEEEECCc
Confidence 567899999999999999887775 46999999999999999987 333456789999998765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccC-CC----cc----ccc-----CCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GV----KN----EYD-----DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~-~~----~~----~~~-----~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+||+++ +..++++++++|||||.+++...... .. .. ... ........+..++.++++++||+++
T Consensus 114 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 191 (263)
T 2yqz_A 114 WHLVPD--WPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPR 191 (263)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCE
T ss_pred hhhcCC--HHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcc
Confidence 999976 78999999999999999998722110 01 00 000 0001223456688888889998854
No 65
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.58 E-value=7.5e-15 Score=153.57 Aligned_cols=145 Identities=13% Similarity=0.175 Sum_probs=111.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++... ..+.+.+.|+.+++.. +++||+|++..+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~--~~~fD~v~~~~~ 116 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP--QDSFDLAYSSLA 116 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC--TTCEEEEEEESC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC--CCCceEEEEecc
Confidence 46789999999999999988888764799999999999999987653 2567889998876543 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCC---Cc--cc----------cc--------------CCcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG---VK--NE----------YD--------------DEDSSVVRSL 263 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~---~~--~~----------~~--------------~~~~~~~~s~ 263 (883)
++|+++ +..++++++++|||||++++.++.... .. .. .. .....++++.
T Consensus 117 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 117 LHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred ccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 999976 889999999999999999998754210 00 00 00 0011223477
Q ss_pred hhhhhhhhhcccccccccCCC
Q psy8372 264 PQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~~~ 284 (883)
.++.++++++||+++......
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHcCCEeeeeccCC
Confidence 899999999999998766543
No 66
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.57 E-value=2.3e-14 Score=155.04 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC--c-c-ceeccCCCCceeeEe--cCHHHHH--HHHHccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA--R-E-FVVPTHEPNKFYSLV--QSPQQLK--QLLMVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga--~-~-f~v~~~~~~~~~~L~--~Spql~k--q~l~~~~~~-- 417 (883)
..++.+.+|++| ...||.||.||.|+... ..|. . . +.+. +..+..++|+ .+|.+.. .. ....-+
T Consensus 73 ~~~l~~~ir~~~-~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~-npl~e~~~LRp~l~p~l~~~~r~-~~~~~~~P 149 (288)
T 3dsq_A 73 LLELEEKLAKAL-HQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQV-FWLDGKKCLRPMLAPNLYTLWRE-LERLWDKP 149 (288)
T ss_dssp HHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTS-CEEETTEEECSCSHHHHHHHHHH-HTTTSCSC
T ss_pred HHHHHHHHHHHH-HHCCCEEEECCeeecHHHHhhcCCCcccccEEee-cccccchhhhhcChHHHHHHHHH-HHhCCCCC
Confidence 468999999999 68999999999997631 1111 1 1 2111 1112346887 4576542 21 222233
Q ss_pred -cEEEEeeceecCCCCCCCCcceecccccccCC
Q psy8372 418 -RYFQIARCYRDESTRPDRQPEFTQLDIELSFT 449 (883)
Q Consensus 418 -rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~ 449 (883)
|+|+||+|||+|..+..|.+||+|+|+++...
T Consensus 150 lrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 150 IRIFEIGTCYRKESQGAQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EEEEEEEEEECSCCSSSCCCSEEEEEEEEEETC
T ss_pred EEEEEEeeEEecCCCCCCcCccEEEEEEEEEcC
Confidence 99999999999999999999999999998653
No 67
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.57 E-value=9.9e-15 Score=157.43 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...... ..+.++++|+.+.+... +++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-GKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-SSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCC-CCCcCEEEECc
Confidence 46789999999999999888777765899999999999999998876533 34688999998765421 36899999999
Q ss_pred cccc--cChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------------cc------c-------------C--
Q psy8372 212 VLMF--ILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------------EY------D-------------D-- 254 (883)
Q Consensus 212 vL~h--l~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------------~~------~-------------~-- 254 (883)
++|| .+.+++..++++++++|||||.+++.++....... .+ . .
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9988 34466889999999999999999998866321100 00 0 0
Q ss_pred CcccccccchhhhhhhhhcccccccccC
Q psy8372 255 EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 255 ~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.......+.+++.++++++||+++....
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 0011234668999999999999886643
No 68
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.57 E-value=1.5e-14 Score=149.12 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC---CCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ ....+...++.++ +... +++||+|++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~fD~v~~~ 123 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPV-GKDYDLICAN 123 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCC-CCCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccccc-CCCccEEEEC
Confidence 568999999999999998877755 699999999999999987 2346777777665 2222 3469999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc----------ccC------Ccccccccchhhhhhhhhcc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE----------YDD------EDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~----------~~~------~~~~~~~s~~~~~~l~~~aG 274 (883)
.+++ ..+ +..++++++++|||||++++.++........ +.. .....+.+.+++.++++++|
T Consensus 124 ~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 124 FALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp SCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred chhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 9999 544 7799999999999999999998764332210 000 11123447889999999999
Q ss_pred cccccccC
Q psy8372 275 LKCVKSEK 282 (883)
Q Consensus 275 f~vv~~~~ 282 (883)
|+++....
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99997665
No 69
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.57 E-value=5.4e-15 Score=159.85 Aligned_cols=148 Identities=9% Similarity=0.120 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC------------------------------C
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD------------------------------K 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~------------------------------~ 183 (883)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++..... .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 5789999999999965433333345799999999999999986542100 0
Q ss_pred CccEEEccCCC-CCCC---cCCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCC-c
Q psy8372 184 LDKCYNVGIQD-FKPE---DLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE-D 256 (883)
Q Consensus 184 ~~~~~~~d~~~-~~~~---~~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~-~ 256 (883)
.+.++.+|+.+ .+.. ..+++||+|+|+.+++|+.. +++..++++++++|||||+|++........ ...... .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-~~~~~~~~ 229 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-YLAGEARL 229 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-EEETTEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-EEcCCeee
Confidence 12456668876 3221 11357999999999999543 368999999999999999999986432211 111111 1
Q ss_pred ccccccchhhhhhhhhcccccccccC
Q psy8372 257 SSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 257 ~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.....+.+++.++|+++||+++....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 12344788999999999999886553
No 70
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.56 E-value=2.5e-14 Score=146.68 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..+ +..+|+|+|+|+.|++.|+++. ..+.++++|+.+++... ++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~--~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPG--ESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCS--SCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCC--CcEEEEEEcChh
Confidence 6789999999999999765 5547999999999999999886 34578888888765433 689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
+|+++ +..++++++++|||||.+++.++....
T Consensus 106 ~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 106 EFVED--VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp TTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred hhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 99976 789999999999999999999876543
No 71
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.56 E-value=8.4e-15 Score=158.12 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
..++.+|||||||+|.++..++.... .+|+|+|+|+.+++.|+++...... ++++.+.|+.+++.. ++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~v~~ 95 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN---DKYDIAIC 95 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS---SCEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC---CCeeEEEE
Confidence 45678999999999999998877633 3799999999999999999875433 568999999986652 58999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc---------------------CCcccccccchhh
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD---------------------DEDSSVVRSLPQF 266 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~---------------------~~~~~~~~s~~~~ 266 (883)
..+++|+++ +..++++++++|||||++++.++.+.... ...+ ...+.......++
T Consensus 96 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (284)
T 3gu3_A 96 HAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 173 (284)
T ss_dssp ESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTH
T ss_pred CChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHH
Confidence 999999976 78999999999999999999987621000 0000 0111122345578
Q ss_pred hhhhhhcccccccccC
Q psy8372 267 CLLFSKANLKCVKSEK 282 (883)
Q Consensus 267 ~~l~~~aGf~vv~~~~ 282 (883)
.++++++||+.+....
T Consensus 174 ~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 174 PIYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 8888888888776543
No 72
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.56 E-value=1.6e-14 Score=152.43 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+.++++|+.+++.. ++||+|+|. .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~v~~~~~ 114 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---NEFDAVTMFFS 114 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---SCEEEEEECSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC---CCccEEEEcCC
Confidence 4567999999999999998888765 599999999999999998876543 468899999886543 589999986 4
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+++|++.+++..++++++++|||||.+++..++
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 566776667899999999999999999986543
No 73
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.56 E-value=4e-15 Score=162.58 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC------CccEEEccCCC------CCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK------LDKCYNVGIQD------FKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~------~~~~~~~d~~~------~~~~~~ 200 (883)
+++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....... .+++.+.++.. +.....
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 357899999999998666666666668999999999999999987654322 13466776621 111111
Q ss_pred CCCccEEEEccccccc-ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl-~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+++||+|+|..++||+ ..++...++++++++|||||++++.++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3689999999999986 3345689999999999999999998875
No 74
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.56 E-value=3.6e-14 Score=158.89 Aligned_cols=150 Identities=14% Similarity=0.206 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCC-CCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFK-PEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~~~FDlVvs~ 210 (883)
+..+|||||||+|.++..++...+. +++++|+ +.+++.|++++..... .+++++.+|+.+.. +. +++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF--PTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC--CCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC--CCCcCEEEEe
Confidence 5679999999999999988887655 7999999 9999999998876543 46789999988753 21 2589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------------ccCCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------------YDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...++++++++|||||++++.+......... .........++..+|.++++++||+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 99999998888899999999999999999998765432110 0112223455888999999999999
Q ss_pred cccccCCCCC
Q psy8372 277 CVKSEKGEFS 286 (883)
Q Consensus 277 vv~~~~~~~~ 286 (883)
++........
T Consensus 336 ~v~~~~~~g~ 345 (363)
T 3dp7_A 336 VEEIQDNIGL 345 (363)
T ss_dssp ESCCCCCBTT
T ss_pred EEEEEeCCCC
Confidence 9987654433
No 75
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.55 E-value=1.1e-14 Score=151.83 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE-cc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI-QW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs-~~ 211 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. .+.++..|+.+++. +++||+|+| ..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~---~~~~D~v~~~~~ 109 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL---GRKFSAVVSMFS 109 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC---SSCEEEEEECTT
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc---CCCCcEEEEcCc
Confidence 4578999999999999998888766 69999999999999998753 35789999987654 368999996 45
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+++|+++ +++..++++++++|||||.+++.++..
T Consensus 110 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 110 SVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp GGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 9999964 568899999999999999999987543
No 76
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.5e-14 Score=143.17 Aligned_cols=134 Identities=20% Similarity=0.153 Sum_probs=106.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ ..++++...| . +.. +++||+|++..+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~--~~~--~~~~D~v~~~~~ 84 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP-K--EIP--DNSVDFILFANS 84 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG-G--GSC--TTCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C--CCC--CCceEEEEEccc
Confidence 4677999999999999998877765 799999999999999988 2355778777 2 222 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
++|+++ +..++++++++|||||++++.++....... ........+..++.++++ ||+++......
T Consensus 85 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~ 149 (170)
T 3i9f_A 85 FHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGI---GPPLSIRMDEKDYMGWFS--NFVVEKRFNPT 149 (170)
T ss_dssp STTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSS---SSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred hhcccC--HHHHHHHHHHhcCCCCEEEEEEcCcccccc---CchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence 999976 789999999999999999999876543211 112233357789999998 99998765543
No 77
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.55 E-value=1.1e-14 Score=164.41 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhc--------cCCCccEEEccCCCC------C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKD--------CDKLDKCYNVGIQDF------K 196 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~--------~~~~~~~~~~d~~~~------~ 196 (883)
.++.+|||||||+|.++..++... . .+|+|+|+|+.|++.|++++... ...+++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999998887763 2 27999999999999999987543 124678999999876 3
Q ss_pred CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc-------cCCcccccccchhhhhh
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY-------DDEDSSVVRSLPQFCLL 269 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~l 269 (883)
.. +++||+|+++.+++|+++ +..++++++++|||||+|++.+.......... .........+..+|.++
T Consensus 162 ~~--~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 162 VP--DSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CC--TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CC--CCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 32 368999999999999976 88999999999999999999886544321100 00111122356899999
Q ss_pred hhhcccccccc
Q psy8372 270 FSKANLKCVKS 280 (883)
Q Consensus 270 ~~~aGf~vv~~ 280 (883)
++++||+.+..
T Consensus 238 l~~aGF~~v~~ 248 (383)
T 4fsd_A 238 VAEAGFRDVRL 248 (383)
T ss_dssp HHHTTCCCEEE
T ss_pred HHHCCCceEEE
Confidence 99999987744
No 78
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.55 E-value=1.7e-14 Score=156.36 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCChHHHHH----HHhCCC-e--EEEEeCCHHHHHHHHHHHhhc-cCCCccE--EEccCCCCCC----C
Q psy8372 133 PGKTRVLDVGAGIGRISKYL----LAKHFD-K--IDLLEQSSKFIEQAKEEILKD-CDKLDKC--YNVGIQDFKP----E 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l----~~~g~~-~--V~gvD~S~~~le~A~~~~~~~-~~~~~~~--~~~d~~~~~~----~ 198 (883)
.++.+|||||||+|.++..+ +..+.. . ++|+|+|+.|++.|++++... ...++.+ ..+++.++.. .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999866433 333332 2 399999999999999987643 2233333 3444443320 0
Q ss_pred cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc--------cccCCcccccccchhhhhhh
Q psy8372 199 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN--------EYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~l~ 270 (883)
..+++||+|++..++||+++ +..++++++++|||||++++.......... .+.......+.+..++.+++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML 208 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence 11368999999999999977 889999999999999999998755322110 01111123345678999999
Q ss_pred hhccccccc
Q psy8372 271 SKANLKCVK 279 (883)
Q Consensus 271 ~~aGf~vv~ 279 (883)
+++||+++.
T Consensus 209 ~~aGf~~~~ 217 (292)
T 2aot_A 209 DNLGLKYEC 217 (292)
T ss_dssp HHHTCCEEE
T ss_pred HHCCCceEE
Confidence 999998764
No 79
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.54 E-value=7.4e-14 Score=144.42 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++..... ..++++++|+.+++.. +++||+|+++.++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE--DKTFDYVIFIDSI 113 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC--TTCEEEEEEESCG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC--CCcEEEEEEcCch
Confidence 477999999999999988877766 79999999999999999887554 4568999998876533 2689999999996
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++...+++..++++++++|||||.+++.++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5555466889999999999999999998765
No 80
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.54 E-value=2.2e-14 Score=150.83 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc---CCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED---LNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.. ..+++++++|+.++.... ....||+|++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEE
Confidence 5678999999999999998888877 59999999999999999873 235688999988754321 0124899999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc-----------------cccCCcccccccchhhhhhhhh
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN-----------------EYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
..++||+++++...++++++++|||||++++.++....... .+.........+.+++.++|
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--
Confidence 99999998767899999999999999999998875432110 00000011123566788888
Q ss_pred cccccccccC
Q psy8372 273 ANLKCVKSEK 282 (883)
Q Consensus 273 aGf~vv~~~~ 282 (883)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 8888876544
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.53 E-value=6e-15 Score=156.38 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-----------------------------C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-----------------------------K 183 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-----------------------------~ 183 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++...... .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 45679999999999999877776664799999999999999988764321 0
Q ss_pred Cc-cEEEccCCCCCCCc--CCCCccEEEEcccccccCh--HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-c
Q psy8372 184 LD-KCYNVGIQDFKPED--LNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-S 257 (883)
Q Consensus 184 ~~-~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~ 257 (883)
.+ .+..+|+.+..+.. ..++||+|++..+++|++. +++..++++++++|||||++++.+...... ....... .
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-YMIGEQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-EEETTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-EEcCCcccc
Confidence 14 78889988765422 1268999999999995533 368899999999999999999988543321 1000110 1
Q ss_pred cccccchhhhhhhhhcccccccccC
Q psy8372 258 SVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 258 ~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
....+.+++.++++++||+++....
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEE
Confidence 2233566999999999999887654
No 82
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.53 E-value=3.8e-15 Score=156.81 Aligned_cols=144 Identities=12% Similarity=0.042 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE---
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI--- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs--- 209 (883)
.++.||||||||+|..+..+++..+.+|+|||+|+.|++.|+++..... ..+.++.+++.+......+++||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcccccccCCceEEEeee
Confidence 4688999999999999987777666689999999999999999887653 334677787765543333468999975
Q ss_pred --cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 210 --QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 210 --~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+++|+++ +..++++++|+|||||+|++.+....... .....+.........+...|.++||++...
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGEL-MKSKYSDITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHH-TTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred ecccchhhhcc--hhhhhhhhhheeCCCCEEEEEecCCchhh-hhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence 455667744 88999999999999999987543211100 000011111112345667788899987644
No 83
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.53 E-value=2.3e-14 Score=148.45 Aligned_cols=135 Identities=20% Similarity=0.177 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.+|||+|||+|.++..++.. +|+|+|+.+++.|+++ .+.++..|+.+++... ++||+|++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~--~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKD--ESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCT--TCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCC--CCeeEEEEcchHh
Confidence 779999999999999865433 8999999999999886 3478888888765433 6899999999999
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--------ccCCcccccccchhhhhhhhhcccccccccCCCC
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--------YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEF 285 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~ 285 (883)
|+++ +..++++++++|+|||.+++.++........ ..........+..++.++++++||+++.......
T Consensus 114 ~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 190 (219)
T 1vlm_A 114 FVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLF 190 (219)
T ss_dssp GSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred hccC--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccC
Confidence 9976 7899999999999999999998764332110 0001122334788999999999999987655443
No 84
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.53 E-value=4.4e-14 Score=147.67 Aligned_cols=105 Identities=16% Similarity=0.308 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
+++.+|||+|||+|.++..++.. .+|+|+|+|+.|++.|+++..... ..+++++.|+.+++.. ++||+|++..
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---~~fD~v~~~~~ 105 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP---EPVDAITILCD 105 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS---SCEEEEEECTT
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC---CCcCEEEEeCC
Confidence 35689999999999999877666 579999999999999999887544 3468899998876543 5899999986
Q ss_pred cccccC-hHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFIL-DEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~-ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+++|+. .+++..++++++++|||||.+++..+
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 999994 45688999999999999999998654
No 85
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.52 E-value=2.5e-14 Score=155.98 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=112.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH-HhC-CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLL-AKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~-~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++ ... ..+|+|+|+|+.+++.|+++....+. .+++++++|+.+++.. ++||+|++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v~~ 193 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR---EGYDLLTS 193 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC---SCEEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc---CCeEEEEE
Confidence 567899999999999998764 222 23799999999999999999876543 3378999999887543 58999999
Q ss_pred cccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCccccc-----C------------------Ccccccccchh
Q psy8372 210 QWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYD-----D------------------EDSSVVRSLPQ 265 (883)
Q Consensus 210 ~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~-----~------------------~~~~~~~s~~~ 265 (883)
+.+++|+++ +....++++++++|||||++++.+........... . .......+..+
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999999976 33446899999999999999998865432211100 0 00112357889
Q ss_pred hhhhhhhcccccccccC
Q psy8372 266 FCLLFSKANLKCVKSEK 282 (883)
Q Consensus 266 ~~~l~~~aGf~vv~~~~ 282 (883)
+.++++++||+++....
T Consensus 274 ~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEc
Confidence 99999999999987664
No 86
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.52 E-value=1.1e-13 Score=138.90 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-c
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ-W 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~-~ 211 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++.. .+.++..|+.+.+.. +++||+|++. .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~~--~~~~D~i~~~~~ 116 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQIS--ETDFDLIVSAGN 116 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCCC--CCCEEEEEECCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCCC--CCceeEEEECCc
Confidence 4678999999999999998887754 69999999999999998764 357889998876543 3689999998 7
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++|++.++...++++++++|+|||.+++....... .+..++.++++++||+++.....
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~-------------~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG-------------WVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS-------------CCHHHHHHHHHHHTEEEEEEESS
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC-------------cCHHHHHHHHHHcCCEEeeeecc
Confidence 899997777889999999999999999998753221 35779999999999998876443
No 87
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=8.1e-14 Score=150.14 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=110.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. .++++++|+.+... +++||+|+++.++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---QENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---CSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---cCCccEEEEccch
Confidence 577999999999999998888866 699999999999999999887655 66899999988765 3689999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+|+++++...++++++++|||||.+++.......... .........+..++.+++.. |+++...
T Consensus 195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP--CPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC--CCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 9998877889999999999999998887654432211 11222344567788888865 6666543
No 88
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.52 E-value=4.8e-14 Score=145.58 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. ++...|+.+......+++||+|++..+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCCCCCCccCEEEECCh
Confidence 467899999999999999887774 579999999999999987643 578888876433222468999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc-------cccc-------CCcccccccchhhhhhhhhcccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK-------NEYD-------DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~-------~~~~-------~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++|+++ +..++++++++|+|||.+++.++...... ..+. ...+....+..++.++++++||+++
T Consensus 103 l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 180 (230)
T 3cc8_A 103 LEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS 180 (230)
T ss_dssp GGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence 999976 77999999999999999999886643210 0000 1112233578899999999999987
Q ss_pred cccCC
Q psy8372 279 KSEKG 283 (883)
Q Consensus 279 ~~~~~ 283 (883)
.....
T Consensus 181 ~~~~~ 185 (230)
T 3cc8_A 181 KVDRV 185 (230)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65543
No 89
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.51 E-value=2.8e-14 Score=152.28 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++ ..++.+.++++.+++... ++||+|+|..+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~--~sfD~v~~~~~ 108 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPP--ASVDVAIAAQA 108 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCS--SCEEEEEECSC
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccC--CcccEEEEeee
Confidence 346799999999999998777665 469999999999988764 235689999999887654 79999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||++ +..++++++|+|||||.|++..+.
T Consensus 109 ~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 109 MHWFD---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CTTCC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhHhh---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 98884 457999999999999999998754
No 90
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.51 E-value=8.7e-14 Score=153.27 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+| .+++.|+++....+. .++++...|+.+.+.. +.||+|++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG---NDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC---SCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC---CCCcEEEEc
Confidence 45679999999999999988887533 79999999 999999998876543 3578999998875433 359999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------cc-----CCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YD-----DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++||+++++...++++++++|+|||++++.+......... ++ .......++.++|.++++++||+.+.
T Consensus 240 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 240 NFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred chhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 99999988778899999999999999999998765432110 00 01133455788999999999999887
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 320 ~~~ 322 (335)
T 2r3s_A 320 LHS 322 (335)
T ss_dssp EEC
T ss_pred EEE
Confidence 644
No 91
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=153.79 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC------------------------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD------------------------------ 182 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~------------------------------ 182 (883)
++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|++++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 57899999999999999888873 34899999999999999987654321
Q ss_pred ----------------------------CCccEEEccCCCCCC---CcCCCCccEEEEccccccc----ChHHHHHHHHH
Q psy8372 183 ----------------------------KLDKCYNVGIQDFKP---EDLNIKYDVIWIQWVLMFI----LDEDIIKFLNL 227 (883)
Q Consensus 183 ----------------------------~~~~~~~~d~~~~~~---~~~~~~FDlVvs~~vL~hl----~ded~~~~l~~ 227 (883)
.+++|.++|+..... ....++||+|+|..+++|+ .++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 367889998875430 0113689999999999888 44578999999
Q ss_pred HHHHhccCcEEEEEecccCCCccc--cc----CCcccccccchhhhhhhhh--cccccccc
Q psy8372 228 CKQILNKNGIIIIKDNVASGVKNE--YD----DEDSSVVRSLPQFCLLFSK--ANLKCVKS 280 (883)
Q Consensus 228 ~~r~LKPGG~lvi~~~~~~~~~~~--~~----~~~~~~~~s~~~~~~l~~~--aGf~vv~~ 280 (883)
++++|||||+|++....+...... .. ..-......+.++..+|.+ +||+.+..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEE
Confidence 999999999999986543321100 00 0001122246788999998 99976644
No 92
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.50 E-value=1.7e-13 Score=146.28 Aligned_cols=148 Identities=10% Similarity=0.060 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHH------HHHHHHHHHhhccC-CCccEEEcc-CCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSK------FIEQAKEEILKDCD-KLDKCYNVG-IQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~------~le~A~~~~~~~~~-~~~~~~~~d-~~~~~~~~~~~ 202 (883)
.++.+|||||||+|.++..++..+ . .+|+|+|+|+. |++.|+++...... .++++...| .........++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 567899999999999999888873 4 47999999997 99999999876543 456788887 32221111236
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-------------c----c--CCcccccccc
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-------------Y----D--DEDSSVVRSL 263 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-------------~----~--~~~~~~~~s~ 263 (883)
+||+|++..+++|+++ +..+++.+.++++|||++++.+......... + . ........+.
T Consensus 122 ~fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 199 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITP 199 (275)
T ss_dssp CCSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred CEEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCH
Confidence 8999999999999987 5567777777778899999988765322100 0 0 1111234577
Q ss_pred hhhhhhhhhcccccccccC
Q psy8372 264 PQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 264 ~~~~~l~~~aGf~vv~~~~ 282 (883)
.++.++++++||+++....
T Consensus 200 ~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 200 DTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp HHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHCCCeeEEEEE
Confidence 8999999999999875543
No 93
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.50 E-value=7.6e-14 Score=143.63 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.... .+++++++|+.++.+ +++||+|++..+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---AELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---SCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---CCCccEEEEccH
Confidence 4667999999999999998877764 6999999999999999988753 367899999988763 369999999999
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ +....++++++++|||||.+++.++.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999986 45578899999999999999998854
No 94
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=141.30 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++... ...+.+..+|+.+++... ++||+|++..+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~--~~fD~v~~~~~ 116 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPS--ASFDVVLEKGT 116 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCS--SCEEEEEEESH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCC--CcccEEEECcc
Confidence 46789999999999999988888775799999999999999998764 345688999988864333 68999999999
Q ss_pred ccccC-------------hHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFIL-------------DEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~-------------ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+. .++...+++++.++|||||.+++.++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 98875 345789999999999999999999853
No 95
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.48 E-value=1.4e-13 Score=151.91 Aligned_cols=145 Identities=20% Similarity=0.178 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.+++.|+++..... ..++++...|+.+. . . .+||+|++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-p--~~~D~v~~~ 242 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-L-P--AGAGGYVLS 242 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C--CSCSEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-C-C--CCCcEEEEe
Confidence 44679999999999999988887655 7999999 999999999887654 35678999998632 1 1 279999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--cccc----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYD----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++||+++++...++++++++|||||++++.+....... ..++ .......++.++|.++++++||+++....
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999999987789999999999999999999987654320 0000 11223346788999999999999987653
No 96
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.48 E-value=4.2e-14 Score=150.95 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++... ++..++.+... ...+++||+|++
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~ 116 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN 116 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence 5678999999999999998888765 5999999999999999987643 23344444332 122468999999
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+.++||+..++...++++++++| |||.++++..
T Consensus 117 ~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 117 DRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 99999998878889999999999 9999999874
No 97
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.48 E-value=6.1e-14 Score=151.41 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc----CCCccEEEccCCCCC---CCcCCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC----DKLDKCYNVGIQDFK---PEDLNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~----~~~~~~~~~d~~~~~---~~~~~~~FDl 206 (883)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++..... ...+.+..+|+.+++ .. +++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA--GDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC--TTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc--CCCeEE
Confidence 567999999999999998888876 69999999999999998764321 124467788877654 32 268999
Q ss_pred EEEc-ccccccCh-----HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 207 IWIQ-WVLMFILD-----EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 207 Vvs~-~vL~hl~d-----ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+|. .+++|+++ +++..++++++++|||||++++..+.
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998 89999987 67889999999999999999998854
No 98
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.48 E-value=1.9e-13 Score=151.96 Aligned_cols=144 Identities=12% Similarity=0.156 Sum_probs=114.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+.+|||||||+|.++..++...+. +++++|+ +.+++.|+++...... .+++++..|+.+.... .++.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-EGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-TTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-CCCCccEEEEecc
Confidence 789999999999999988887655 8999999 8899999998776543 3578999998875411 1247999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc------cc-----CCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE------YD-----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~------~~-----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+||+++++...++++++++|||||++++.+......... ++ .......++..+|.++++++||+++..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 999998778999999999999999999998764432110 00 112334567889999999999999874
No 99
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.47 E-value=4.3e-14 Score=148.16 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC--CCCcCCCCccEEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF--KPEDLNIKYDVIWI- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~FDlVvs- 209 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++..... .++.++++|+.++ +.. +++||+|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~--~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLP--DGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSC--TTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccC--CCceEEEEEC
Confidence 4678999999999999987765555589999999999999999887544 4568889998876 333 368999999
Q ss_pred cccc--cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccC-Ccccccccchhhhhhhhhccccc
Q psy8372 210 QWVL--MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDD-EDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL--~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
.+.+ +.....+...++++++++|||||+|++.+...... .... .........+.+...+.++||..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE--LMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH--HTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHH--hhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 5543 22222446688999999999999999876542110 0000 00011111245567788899985
No 100
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.47 E-value=3.3e-14 Score=161.82 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.... ....+...+...++.. +++||+|++..+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~--~~~fD~I~~~~v 180 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRV--RTDFFEKATADDVRRT--EGPANVIYAANT 180 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCE--ECSCCSHHHHHHHHHH--HCCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCc--ceeeechhhHhhcccC--CCCEEEEEECCh
Confidence 4678999999999999998888766 6999999999999998762211 0101112222222221 268999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc--ccccC--CcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK--NEYDD--EDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~--~~~~~--~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++|+++ +..++++++++|||||++++.++...... ..+.. ..+..+.+..++..+++++||+++....
T Consensus 181 l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 181 LCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 999976 88999999999999999999876522110 00111 2233445788999999999999987654
No 101
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.46 E-value=3.1e-13 Score=145.57 Aligned_cols=141 Identities=13% Similarity=0.230 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCC---ChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----------Cc
Q psy8372 134 GKTRVLDVGAGI---GRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----------ED 199 (883)
Q Consensus 134 ~~~rVLDVGCGt---G~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 199 (883)
+..+|||||||+ |.++..+...... +|+++|+|+.|++.|++++.. ..+++++++|+.+... .+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 457999999999 9887655554333 799999999999999998753 3457899999875320 11
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCc------ccccC-Ccccccccchhhhhhhhh
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK------NEYDD-EDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~------~~~~~-~~~~~~~s~~~~~~l~~~ 272 (883)
.++||+|++..++||++++++..++++++++|||||+|++.+....... ..+.. ......++.+++..+|
T Consensus 155 -~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l-- 231 (274)
T 2qe6_A 155 -FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF-- 231 (274)
T ss_dssp -TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--
T ss_pred -CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--
Confidence 1479999999999999887789999999999999999999987653200 00110 1123446778888888
Q ss_pred ccccccc
Q psy8372 273 ANLKCVK 279 (883)
Q Consensus 273 aGf~vv~ 279 (883)
+||+++.
T Consensus 232 ~G~~l~~ 238 (274)
T 2qe6_A 232 GDFELVE 238 (274)
T ss_dssp TTCEECT
T ss_pred CCCeEcc
Confidence 4887765
No 102
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.45 E-value=2.1e-13 Score=149.18 Aligned_cols=113 Identities=15% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-------cCCCccEEEccCCCCC----CCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-------CDKLDKCYNVGIQDFK----PEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-------~~~~~~~~~~d~~~~~----~~~~~ 201 (883)
+++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.... ....+.++++|+.+.+ ....+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 356799999999999998888765558999999999999999987653 2234688999998865 22223
Q ss_pred CCccEEEEccccccc-C-hHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 202 IKYDVIWIQWVLMFI-L-DEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl-~-ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
++||+|+|..++||+ . .+++..++++++++|||||.+++.++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 589999999999998 3 3567899999999999999999998754
No 103
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.45 E-value=7.5e-13 Score=148.46 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=115.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.+++.|+++..... ..++++...|+.+. .. ..||+|++.
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~p--~~~D~v~~~ 275 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET--IP--DGADVYLIK 275 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC--CC--SSCSEEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC--CC--CCceEEEhh
Confidence 45689999999999999988887654 7999999 999999999887654 35678999998732 11 379999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccc----c----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY----D----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~----~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+++||+++++...++++++++|||||++++.+.......... + .......++.++|.++++++||+++....
T Consensus 276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 276 HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999987777999999999999999999987654421110 0 11123346788999999999999987754
No 104
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.44 E-value=3.1e-13 Score=138.16 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++........+++...|+.+.. +++||+|+++.+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i~~~~~ 134 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLIVANIL 134 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEEEEESC
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEEEECCc
Confidence 4678999999999999998777666589999999999999999988765554789999987643 258999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++++ ..+++++.++|||||++++.+... .+...+..+++++||+++....
T Consensus 135 ~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 135 AEIL-----LDLIPQLDSHLNEDGQVIFSGIDY---------------LQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp HHHH-----HHHGGGSGGGEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHH-----HHHHHHHHHhcCCCCEEEEEecCc---------------ccHHHHHHHHHHcCCceEEeec
Confidence 7664 578999999999999999986432 1466889999999999886544
No 105
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.44 E-value=4.2e-13 Score=134.77 Aligned_cols=110 Identities=10% Similarity=0.036 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW- 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~- 211 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+..++++++.+..++.... +++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~~~~~ 98 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAIFNLG 98 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEEEeCC
Confidence 46789999999999999988777 4479999999999999999988766566788887776643222 36899999873
Q ss_pred ccccc------ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFI------LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl------~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++. ..++...+++++.++|||||.+++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 32220 1145678899999999999999998754
No 106
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.44 E-value=9.7e-13 Score=146.81 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+ +.+++.|+++...... .+++++..|+.+.+.. .+|+|++.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~D~v~~~ 263 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP----EADAVLFC 263 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC----CCSEEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC----CCCEEEEe
Confidence 56789999999999999988887644 7999999 9999999998876543 3478999998876432 34999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-c----------c-CCcccccccchhhhhhhhhcccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-Y----------D-DEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-~----------~-~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.++||+++++...++++++++|||||++++.+......... + . ......+++.++|.++++++||+++
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 99999998888999999999999999999988654322100 0 0 0011122688899999999999987
Q ss_pred cccC
Q psy8372 279 KSEK 282 (883)
Q Consensus 279 ~~~~ 282 (883)
....
T Consensus 344 ~~~~ 347 (359)
T 1x19_A 344 TMVR 347 (359)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 107
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.44 E-value=1.2e-12 Score=133.80 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++...+..+++++..|+.+..... ++||+|++..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~i~~~~ 116 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL--PDPDRVFIGG 116 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS--CCCSEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC--CCCCEEEECC
Confidence 5678999999999999998888864 389999999999999999988766667789999987654433 5799999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+++ ++..+++++.++|||||++++..... .+...+...++++||.
T Consensus 117 ~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 117 SGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL---------------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp CTT-----CHHHHHHHHHHHCCTTCEEEEEECBH---------------HHHHHHHHHHHHTTCE
T ss_pred CCc-----CHHHHHHHHHHhcCCCeEEEEEeccc---------------ccHHHHHHHHHHCCCc
Confidence 775 26689999999999999999987422 2456788889999983
No 108
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.42 E-value=4.4e-13 Score=150.14 Aligned_cols=145 Identities=21% Similarity=0.220 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..... +++++|+ +.+++.|+++....+. .+++++..|+.+. .. ..||+|++.
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~---~~~D~v~~~ 255 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LP---VTADVVLLS 255 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS---CCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-CC---CCCCEEEEe
Confidence 46789999999999999988887644 7999999 9999999998876543 3678999998752 21 259999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec--ccCCCcc-----ccc----CCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN--VASGVKN-----EYD----DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~--~~~~~~~-----~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.++||+++++...++++++++|||||++++.+. ....... .++ ...+...++..+|.++++++||+++.
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 999999887677999999999999999999887 4221100 000 00112345788999999999999887
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 336 ~~~ 338 (374)
T 1qzz_A 336 ERT 338 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 109
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.42 E-value=5.9e-13 Score=144.49 Aligned_cols=108 Identities=23% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCc----CCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPED----LNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~----~~~~F 204 (883)
.++.+|||||||+|.++..++.. ...+|+|+|+|+.|++.|+++.... ...+++++++|+.+++... ..++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 46789999999999999988863 3458999999999999999988764 3456789999998765321 01689
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
|+|++..++||+ + +..++++++++|||||.+++.+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999 5 88999999999999999999543
No 110
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.5e-13 Score=136.17 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++......+++++++|+.++.....+++||+|+++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 35779999999999999988887777899999999999999999887665677899999887642111368999999988
Q ss_pred ccccChHHHHHHHHHHHH--HhccCcEEEEEeccc
Q psy8372 213 LMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNVA 245 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~~ 245 (883)
+++. .++...++..+.+ +|||||.+++.....
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7765 2457899999999 999999999987544
No 111
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.41 E-value=1.2e-12 Score=145.99 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||||||+|.++..++++.+. +++..|. |.+++.|+++.......+++++.+|+.+.++ ..+|+|++..
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~----~~~D~~~~~~ 252 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL----PEADLYILAR 252 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC----CCCSEEEEES
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC----CCceEEEeee
Confidence 45679999999999999999988776 7788886 8899999998776566778999999865322 3589999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------ccc----CCcccccccchhhhhhhhhccccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYD----DEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
+||++++++...+|++++++|+|||+++|.+....+... .++ ...++..++..+|.++++++||+.++..
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 999999988899999999999999999999876432211 000 1123445688999999999999998765
Q ss_pred C
Q psy8372 282 K 282 (883)
Q Consensus 282 ~ 282 (883)
.
T Consensus 333 ~ 333 (353)
T 4a6d_A 333 K 333 (353)
T ss_dssp C
T ss_pred E
Confidence 4
No 112
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.41 E-value=1e-12 Score=144.99 Aligned_cols=142 Identities=12% Similarity=0.214 Sum_probs=111.8
Q ss_pred CeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+|||||||+|..+..++...+. +++++|+ +.+++.|+++....+ ..+++++..|+.+ +. +++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV---PSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC---CSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC---CCCCCEEEEchhc
Confidence 79999999999999988887544 7999999 999999999876543 3457899999876 22 2479999999999
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----cc----CCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----YD----DEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
||+++++...++++++++|||||++++.+......... ++ .......++..+|.++++++||+++....
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 99988777899999999999999999998764332110 00 00123345788999999999999886543
No 113
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.40 E-value=1e-12 Score=146.45 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=113.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..+.. +++++|+ +.+++.|+++....+. .+++++..|+.+.. . ..||+|++.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---~~~D~v~~~ 256 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-P---RKADAIILS 256 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S---SCEEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC-C---CCccEEEEc
Confidence 46789999999999999988888654 7999999 9999999998876543 36789999987522 1 359999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcc-c----cc----CCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKN-E----YD----DEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~-~----~~----~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.++||+++++...++++++++|||||++++.+.. ...... . ++ ...+...++.++|.++++++||+++..
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEV 336 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEE
Confidence 9999998877789999999999999999999876 221110 0 00 011234457889999999999998865
Q ss_pred cC
Q psy8372 281 EK 282 (883)
Q Consensus 281 ~~ 282 (883)
..
T Consensus 337 ~~ 338 (360)
T 1tw3_A 337 RQ 338 (360)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 114
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.40 E-value=1.5e-12 Score=138.49 Aligned_cols=139 Identities=19% Similarity=0.318 Sum_probs=102.1
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeE
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKI 160 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V 160 (883)
.....++..+++|+....... + .........++..+. +++.+|||||||+|.++..++..+. +|
T Consensus 16 ~~~~~~~~~a~~Yd~~~~~~~-~--------~~~~~~~~~~l~~~~------~~~~~vLDiGcG~G~~~~~l~~~~~-~v 79 (260)
T 2avn_A 16 RSWEFYDRIARAYDSMYETPK-W--------KLYHRLIGSFLEEYL------KNPCRVLDLGGGTGKWSLFLQERGF-EV 79 (260)
T ss_dssp CHHHHHHHHHHHHGGGGCSHH-H--------HHHHHHHHHHHHHHC------CSCCEEEEETCTTCHHHHHHHTTTC-EE
T ss_pred hhcchhhHHHHHHHHhccccc-h--------hHHHHHHHHHHHHhc------CCCCeEEEeCCCcCHHHHHHHHcCC-eE
Confidence 446778888888876542110 0 011122333343332 2677999999999999998877755 69
Q ss_pred EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 161 DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 161 ~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+|+|+|+.|++.|+++... .+.+.|+.+++... ++||+|++..+++|+.++ +..++++++++|||||.+++
T Consensus 80 ~gvD~s~~~l~~a~~~~~~------~~~~~d~~~~~~~~--~~fD~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 150 (260)
T 2avn_A 80 VLVDPSKEMLEVAREKGVK------NVVEAKAEDLPFPS--GAFEAVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIA 150 (260)
T ss_dssp EEEESCHHHHHHHHHHTCS------CEEECCTTSCCSCT--TCEEEEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhhcCC------CEEECcHHHCCCCC--CCEEEEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEE
Confidence 9999999999999988651 27888888766433 689999998877776322 88999999999999999999
Q ss_pred Eecc
Q psy8372 241 KDNV 244 (883)
Q Consensus 241 ~~~~ 244 (883)
..+.
T Consensus 151 ~~~~ 154 (260)
T 2avn_A 151 TVDN 154 (260)
T ss_dssp EEEB
T ss_pred EeCC
Confidence 8864
No 115
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.40 E-value=2.8e-12 Score=152.84 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhc------cCCCccEEEccCCCCCCCcCCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKD------CDKLDKCYNVGIQDFKPEDLNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~FD 205 (883)
++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++... ...+++++++|+.+++... ++||
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d--~sFD 798 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRL--HDVD 798 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTS--CSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCccc--CCee
Confidence 678999999999999998877763 47999999999999999866532 3346789999999877654 7899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC-------------------cccccCCcccccccchhh
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV-------------------KNEYDDEDSSVVRSLPQF 266 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~-------------------~~~~~~~~~~~~~s~~~~ 266 (883)
+|++..+++|++++....++++++++|||| .+++.++..... ...+...++.+..+..++
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEF 877 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQF 877 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHH
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHH
Confidence 999999999999876778999999999999 888887654210 011222223333344555
Q ss_pred hh----hhhhcccccccccCCCC
Q psy8372 267 CL----LFSKANLKCVKSEKGEF 285 (883)
Q Consensus 267 ~~----l~~~aGf~vv~~~~~~~ 285 (883)
.. +..+.||.+.....+..
T Consensus 878 r~Wae~LAer~GYsVefvGVGDg 900 (950)
T 3htx_A 878 NQWASKLGKRHNYSVEFSGVGGS 900 (950)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSC
T ss_pred HHHHHHHHHhcCcEEEEEccCCC
Confidence 55 66777888766655543
No 116
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.40 E-value=1.3e-12 Score=136.15 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++. .+++++++|+.+..+...+++||+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~~fD~v~~~~- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----PHADVYEWNGKGELPAGLGAPFGLIVSRR- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCSCSSCCTTCCCCEEEEEEES-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----CCceEEEcchhhccCCcCCCCEEEEEeCC-
Confidence 4678999999999999998887754 6999999999999999882 34689999995433222136899999972
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
+ +..++++++++|||||.++... ...+...+...+.++||..+..
T Consensus 120 -----~--~~~~l~~~~~~LkpgG~l~~~~----------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 -----G--PTSVILRLPELAAPDAHFLYVG----------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -----C--CSGGGGGHHHHEEEEEEEEEEE----------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred -----C--HHHHHHHHHHHcCCCcEEEEeC----------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 2 4578899999999999999111 1224668899999999987643
No 117
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.39 E-value=1.4e-12 Score=135.67 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=103.4
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|++++...+. +++++++|+..+.... +++||+|+++.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~-~~~fD~I~~np 131 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVV-EGTFDVIFSAP 131 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTC-CSCEEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcc-cCceeEEEECC
Confidence 567899999999 99999988877444799999999999999999887655 6789999975443322 36899999997
Q ss_pred cccccCh-----------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 212 VLMFILD-----------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 212 vL~hl~d-----------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
.+++.++ +.+..+++++.++|||||++++..+.. .....++.+.++++|
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~~~~l~~~g 197 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK--------------EKLLNVIKERGIKLG 197 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC--------------HHHHHHHHHHHHHTT
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc--------------HhHHHHHHHHHHHcC
Confidence 7765432 124789999999999999999976321 123567888999999
Q ss_pred cccccccCC
Q psy8372 275 LKCVKSEKG 283 (883)
Q Consensus 275 f~vv~~~~~ 283 (883)
|.+...+..
T Consensus 198 ~~~~~~~~~ 206 (230)
T 3evz_A 198 YSVKDIKFK 206 (230)
T ss_dssp CEEEEEEEC
T ss_pred CceEEEEec
Confidence 987665443
No 118
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.39 E-value=1.4e-12 Score=146.40 Aligned_cols=139 Identities=21% Similarity=0.284 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+..+|||||||+|.++..++...+. +++++|+ +.+++.|++. .+++++.+|+.+ +.+. . |+|++.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~---~-D~v~~~ 268 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPK---G-DAIFIK 268 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCC---C-SEEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCC---C-CEEEEe
Confidence 356689999999999999988887655 7999999 8888877532 356899999876 2222 3 999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------cc-----CCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YD-----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~-----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...+|++++++|||||++++.+......... ++ .......++..+|.++++++||+
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~ 348 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR 348 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence 99999998888899999999999999999998764432110 00 01234456788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 349 ~v~~~~ 354 (368)
T 3reo_A 349 GFKVAS 354 (368)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 987644
No 119
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.38 E-value=2.9e-12 Score=131.69 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+.. +++++.+|+.+..+.. .+||+|++..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~--~~~D~v~~~~ 130 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL--PLPEAVFIGG 130 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS--CCCSEEEECS
T ss_pred CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC--CCCCEEEECC
Confidence 56789999999999999988887 447999999999999999998876655 6789999988743332 4799999877
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+ + .. +++++.++|||||++++..... .+.......+++.|+++...
T Consensus 131 ~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 GG----S--QA-LYDRLWEWLAPGTRIVANAVTL---------------ESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CC----C--HH-HHHHHHHHSCTTCEEEEEECSH---------------HHHHHHHHHHHHHCSEEEEE
T ss_pred cc----c--HH-HHHHHHHhcCCCcEEEEEecCc---------------ccHHHHHHHHHhCCCcEEEE
Confidence 44 2 45 9999999999999999987432 23557778888888776544
No 120
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.38 E-value=2.7e-12 Score=132.37 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++...+. +|+|+|+|+.+++.|++++...+..++.++++|+.++.....+++||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 5679999999999999988887644 799999999999999999887666678899999987542111368999999876
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
..+.... ....++++++++|||||.+++.+... .......+.+.++||+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR---------------GLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH---------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH---------------HHHHHHHHHHHHCCCeeeecc
Confidence 5443210 13579999999999999999976211 012455677888898876543
No 121
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.37 E-value=2.3e-12 Score=144.40 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=108.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..+..+|||||||+|.++..++...+. +++++|+ +.+++.|++. .+++++..|+.+ +.+. . |+|++.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~---~-D~v~~~ 266 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPS---G-DTILMK 266 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCC---C-SEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCC---C-CEEEeh
Confidence 346789999999999999988887655 7999999 8888777542 457899999876 3222 3 999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---------cc-----CCcccccccchhhhhhhhhcccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---------YD-----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---------~~-----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
.++||+++++...+|++++++|||||++++.+......... ++ .......++.++|.++++++||+
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~ 346 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFT 346 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCC
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCc
Confidence 99999998888999999999999999999998765432110 01 11234456788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 347 ~v~~~~ 352 (364)
T 3p9c_A 347 GVKSTY 352 (364)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 987654
No 122
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.37 E-value=2.2e-12 Score=128.10 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|++++...+.. ++ ++..|..+..+. ..++||+|++.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-VPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-CCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-cCCCCCEEEEC
Confidence 5677999999999999998777643 37999999999999999998776544 55 777777542222 12589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+++| ..+++++.++|||||++++.+... .+...+...+++.|+++..
T Consensus 102 ~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPVGGRLVANAVTV---------------ESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCTTCEEEEEECSH---------------HHHHHHHHHHHHHCCEEEE
T ss_pred CcccH------HHHHHHHHHhcCCCCEEEEEeecc---------------ccHHHHHHHHHHcCCeeEE
Confidence 99988 268999999999999999988432 1344667777788766654
No 123
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.37 E-value=1.2e-12 Score=145.63 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++...+. +++++|++ .++. +++.... ...++++..+|+.+.. + +||+|++.
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~----p-~~D~v~~~ 254 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREV----P-HADVHVLK 254 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCC----C-CCSEEEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCC----C-CCcEEEEe
Confidence 56789999999999999988887665 78999994 4544 2222211 2345788999986321 2 79999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc-----c----cCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-----Y----DDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~-----~----~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.++||+++++...++++++++|||||++++.+......... + ........++.++|.++++++||+++...
T Consensus 255 ~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 334 (348)
T 3lst_A 255 RILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVV 334 (348)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 99999998777899999999999999999998764432110 0 01122334678899999999999998766
Q ss_pred C
Q psy8372 282 K 282 (883)
Q Consensus 282 ~ 282 (883)
.
T Consensus 335 ~ 335 (348)
T 3lst_A 335 G 335 (348)
T ss_dssp E
T ss_pred E
Confidence 5
No 124
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=134.49 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..+ + .+|+|+|+|+. .+.+..+|+.+.+... ++||+|++..+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~--~~fD~v~~~~~ 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---R-NPVHCFDLASL---------------DPRVTVCDMAQVPLED--ESVDVAVFCLS 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---C-SCEEEEESSCS---------------STTEEESCTTSCSCCT--TCEEEEEEESC
T ss_pred CCCCeEEEECCcCCHHHHHh---h-ccEEEEeCCCC---------------CceEEEeccccCCCCC--CCEeEEEEehh
Confidence 45679999999999998755 2 46999999987 3468889988765433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+|| .+ +..++++++++|+|||.+++.++... ..+..++.++++++||+++....
T Consensus 125 l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~-------------~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 125 LMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR-------------FEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp CCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG-------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred ccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC-------------CCCHHHHHHHHHHCCCEEEEEec
Confidence 975 44 78999999999999999999885321 12678999999999999887543
No 125
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.37 E-value=6.1e-13 Score=137.30 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=97.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHh----hccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEIL----KDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.+.+++. .....+++++++|+.+++... ++ |.|
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~--~~-d~v 102 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS--GV-GEL 102 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC--CE-EEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC--CC-CEE
Confidence 46789999999999999988887533 79999999999986543332 233446789999999876543 34 666
Q ss_pred EE---ccccc--ccChHHHHHHHHHHHHHhccCcEEEEEecccCCCccc--ccC-Ccccccccchhhhhhhhhccccccc
Q psy8372 208 WI---QWVLM--FILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE--YDD-EDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 208 vs---~~vL~--hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~--~~~-~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
++ ...++ |+++ +..++++++++|||||.+++........... ... ...........+..++.++||++..
T Consensus 103 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 53 33332 6644 5789999999999999999965332111100 000 0000111133578899999999876
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
.+.
T Consensus 181 ~~~ 183 (218)
T 3mq2_A 181 CRY 183 (218)
T ss_dssp EEE
T ss_pred eec
Confidence 543
No 126
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.36 E-value=7.8e-13 Score=138.26 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCC-HHHHHHH---HHHHhhccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQS-SKFIEQA---KEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S-~~~le~A---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||||||+|.++..++..... .|+|+|+| +.|++.| ++++...+..++.+.++|+.+++. ...+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~-~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF-ELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG-GGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh-hccCeEEEE
Confidence 46779999999999999988765444 79999999 7888777 666665555677899999988742 212345555
Q ss_pred EEcccccccC---hHHHHHHHHHHHHHhccCcEEEEEecccCCCccc---ccC-Ccc-cccccchhhhhhhhhccccccc
Q psy8372 208 WIQWVLMFIL---DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE---YDD-EDS-SVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 208 vs~~vL~hl~---ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~---~~~-~~~-~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++....+.. ..+...++++++++|||||.+++........... ... ... ..+...+++..+++++||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 5543322110 0113468999999999999999944322221100 000 000 0111222488999999999876
Q ss_pred ccC
Q psy8372 280 SEK 282 (883)
Q Consensus 280 ~~~ 282 (883)
...
T Consensus 182 ~~~ 184 (225)
T 3p2e_A 182 VKE 184 (225)
T ss_dssp EEE
T ss_pred eee
Confidence 543
No 127
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.35 E-value=1.5e-12 Score=133.42 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC--CCccEEEccCCCCCCCcCCCC-ccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCYNVGIQDFKPEDLNIK-YDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~-FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...+. .+++++++|+.++.+...+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4679999999999999987888777899999999999999999887655 567899999877544311358 9999998
Q ss_pred ccccccChHHHHHHHHHH--HHHhccCcEEEEEeccc
Q psy8372 211 WVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~--~r~LKPGG~lvi~~~~~ 245 (883)
..++ . .+...+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8854 4 3367888888 67899999999988543
No 128
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.34 E-value=4e-12 Score=131.49 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++...+..++.++++|+.++.....+++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 4679999999999999988887543 799999999999999999887766678899999887531111368999988654
Q ss_pred ccccChH------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDE------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~de------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
..+.... ....++++++++|||||.+++.+... .........+.++||....
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~---------------~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR---------------GLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH---------------HHHHHHHHHHHHHTCEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCcccc
Confidence 4332210 02578999999999999999987211 0123445667777876543
No 129
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.34 E-value=2.2e-12 Score=137.14 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++..+... +++...|+.+..+ .++||+|+++..
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~---~~~fD~Vv~n~~ 193 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP---FGPFDLLVANLY 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG---GCCEEEEEEECC
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc---CCCCCEEEECCc
Confidence 4678999999999999998888777 7999999999999999998866544 6788888765311 258999999765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
.++ +..++.++.++|||||+++++.... .+..++.+.++++||+++....
T Consensus 194 ~~~-----~~~~l~~~~~~LkpgG~lils~~~~---------------~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 194 AEL-----HAALAPRYREALVPGGRALLTGILK---------------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHH-----HHHHHHHHHHHEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred HHH-----HHHHHHHHHHHcCCCCEEEEEeecc---------------CCHHHHHHHHHHCCCEEEEEec
Confidence 543 5679999999999999999987432 2366889999999999876544
No 130
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.34 E-value=6e-12 Score=127.61 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...+. .+++++++|+.++.... +++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-DCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-CSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-cCCceEEEE
Confidence 467899999999999999888762 23799999999999999999887644 56789999987765222 368999999
Q ss_pred cccccc-------cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QWVLMF-------ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~h-------l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+..+.. ...++...+++++.++|||||++++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 875511 11234678999999999999999998754
No 131
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.34 E-value=2e-12 Score=138.12 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCeEEEEcCCC--ChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGI--GRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 116 ~~~~~lL~~l~~~~~~~~~~~rVLDVGCGt--G~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
+..+.|+..............+|||||||+ +.++..++.. .. .+|+++|.|+.|++.|++++.......+.++++|
T Consensus 60 ~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD 139 (277)
T 3giw_A 60 RANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEAD 139 (277)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEec
Confidence 344556665543332112346899999997 3344445543 22 2799999999999999998875433457899999
Q ss_pred CCCCCC----CcCCCCcc-----EEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcc-------ccc-
Q psy8372 192 IQDFKP----EDLNIKYD-----VIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKN-------EYD- 253 (883)
Q Consensus 192 ~~~~~~----~~~~~~FD-----lVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~-------~~~- 253 (883)
+.++.. ....+.|| .|+++.+|||+++++ +..++++++++|+|||+|++++........ .+.
T Consensus 140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~ 219 (277)
T 3giw_A 140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA 219 (277)
T ss_dssp TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence 987521 00012454 688999999998854 689999999999999999999876542110 011
Q ss_pred CCcccccccchhhhhhhhhccccccc
Q psy8372 254 DEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 254 ~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.......++.+++..+|. ||+++.
T Consensus 220 ~g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 220 RNMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred cCCCCccCCHHHHHHHhC--CCcccC
Confidence 111234567889999995 888653
No 132
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.34 E-value=8e-12 Score=125.14 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++........ ++++..|+.+... +++||+|+++
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~ 126 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIITN 126 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---cCCceEEEEC
Confidence 46789999999999999988777 4479999999999999999987665554 7889999877443 3589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|. .++...++++++++|+|||.+++.++.
T Consensus 127 ~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 127 PPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 988763 245789999999999999999999854
No 133
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.34 E-value=3e-12 Score=143.63 Aligned_cols=138 Identities=22% Similarity=0.200 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
+++.+|||||||+|.++..++..++. +++++|+ +.+++.|++. ..++++.+|+.+ + .. . ||+|++..
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~~--~-~D~v~~~~ 275 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------SGIEHVGGDMFA-S-VP--Q-GDAMILKA 275 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-C-CC--C-EEEEEEES
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------CCCEEEeCCccc-C-CC--C-CCEEEEec
Confidence 45689999999999999988888755 7888999 9999877641 346889998876 2 22 3 99999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc---------cccC----Ccccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN---------EYDD----EDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~---------~~~~----~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++||+++++...++++++++|||||++++.+........ .++. ......++..+|.++++++||+++
T Consensus 276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 355 (372)
T 1fp1_D 276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKF 355 (372)
T ss_dssp SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceE
Confidence 999998866679999999999999999998765432211 0000 112334578899999999999988
Q ss_pred cccC
Q psy8372 279 KSEK 282 (883)
Q Consensus 279 ~~~~ 282 (883)
....
T Consensus 356 ~~~~ 359 (372)
T 1fp1_D 356 QVAC 359 (372)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7544
No 134
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.33 E-value=3.7e-12 Score=143.41 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...... +++++.|+.+..... ++||+|+++..
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~~--~~fD~Ii~npp 307 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTEE--ARFDIIVTNPP 307 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCTT--CCEEEEEECCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccccC--CCeEEEEECCc
Confidence 3577999999999999998888765 6999999999999999998876544 689999998876542 68999999999
Q ss_pred ccc---cChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMF---ILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~h---l~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+ ...+....+++++.++|||||.+++..+.
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 988 23356889999999999999999998753
No 135
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.33 E-value=9e-12 Score=133.81 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.|++++...+..+++++++|+.+..+ .++||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~---~~~fD~Iv~np 184 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVSNP 184 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT---TCCEEEEEECC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc---cCCccEEEECC
Confidence 3567999999999999998886643 3799999999999999999887665567889999876432 35899999983
Q ss_pred -------------cccccCh----------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhh
Q psy8372 212 -------------VLMFILD----------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCL 268 (883)
Q Consensus 212 -------------vL~hl~d----------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 268 (883)
+++|.+. +.+..++.++.++|||||++++... ..+..++.+
T Consensus 185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------~~~~~~~~~ 248 (276)
T 2b3t_A 185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------WQQGEAVRQ 248 (276)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----------------SSCHHHHHH
T ss_pred CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------chHHHHHHH
Confidence 4444331 3467899999999999999999742 123568899
Q ss_pred hhhhcccccccc
Q psy8372 269 LFSKANLKCVKS 280 (883)
Q Consensus 269 l~~~aGf~vv~~ 280 (883)
+++++||+.+..
T Consensus 249 ~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 249 AFILAGYHDVET 260 (276)
T ss_dssp HHHHTTCTTCCE
T ss_pred HHHHCCCcEEEE
Confidence 999999987654
No 136
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.32 E-value=2.5e-12 Score=135.24 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|..+..++.... .+|+|+|+|+.|++.|+++....+..+++++++|+.++... ...++||+|+|.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 3577999999999999987775433 37999999999999999998876655688999998876532 113689999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+ .+ +..+++.+.++|||||.+++..... ......++...++.+||++....
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~-------------~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAAS-------------AEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC--------------CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCC-------------chHHHHHHHHHHHHcCCeEeEEE
Confidence 63 33 7789999999999999999874211 00123467778889999887654
No 137
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.32 E-value=4.2e-12 Score=141.28 Aligned_cols=138 Identities=20% Similarity=0.290 Sum_probs=106.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.+..+|||||||+|.++..++...+. +++++|+ +.|++.|++. ..+++..+|+.+ + .. .||+|++..
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~p---~~D~v~~~~ 254 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-S-IP---NADAVLLKY 254 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-C-CC---CCSEEEEES
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-C-CC---CccEEEeeh
Confidence 45679999999999999988877544 7999999 9999887641 236888898865 2 22 399999999
Q ss_pred cccccChHHHHHHHHHHHHHhcc---CcEEEEEecccCCCccc---------ccC---Ccccccccchhhhhhhhhcccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YDD---EDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKP---GG~lvi~~~~~~~~~~~---------~~~---~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
++||+++++...++++++++||| ||++++.+......... ++- ......++..+|.++++++||+
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~ 334 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 334 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCC
Confidence 99999886677999999999999 99999998764332110 000 0113345788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
.+....
T Consensus 335 ~~~~~~ 340 (352)
T 1fp2_A 335 HYKISP 340 (352)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 886544
No 138
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.32 E-value=7.1e-12 Score=135.37 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++.+|||||||+|.++..++++ ...+|+|+|+|+.|++.|++++...+..+++++++|+.+++ +++||+|++
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDvV~~ 194 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDVLMV 194 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSEEEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCEEEE
Confidence 3467899999999999876545444 23379999999999999999988765567899999998864 268999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
... +++ ...++++++++|||||++++..
T Consensus 195 ~a~---~~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 195 AAL---AEP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CTT---CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCC---ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 654 444 7799999999999999999987
No 139
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.31 E-value=4.2e-12 Score=126.98 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++...... ..+.+...|+.+..+.. ++||+|++..
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~v~~~~ 108 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI--PDIDIAVVGG 108 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS--CCEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC--CCCCEEEECC
Confidence 567899999999999999887777 6799999999999999998876644 56688888876622221 4899999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
+++|+ ..+++++.++|+|||.+++..+.. .+...+...++++||.+
T Consensus 109 ~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 109 SGGEL-----QEILRIIKDKLKPGGRIIVTAILL---------------ETKFEAMECLRDLGFDV 154 (192)
T ss_dssp CTTCH-----HHHHHHHHHTEEEEEEEEEEECBH---------------HHHHHHHHHHHHTTCCC
T ss_pred chHHH-----HHHHHHHHHhcCCCcEEEEEecCc---------------chHHHHHHHHHHCCCce
Confidence 87654 579999999999999999987421 13457788889999844
No 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.31 E-value=5.9e-12 Score=133.97 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++...... +++++++|+.++......++||+|+++..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 67899999999999999877776658999999999999999998876443 57899999988754222468999999765
Q ss_pred cccc------------------ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 213 LMFI------------------LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 213 L~hl------------------~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
+.+. ...++..+++.+.++|||||++++.... ....++...+.+.|
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------ERLLDIIDIMRKYR 192 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT----------------TTHHHHHHHHHHTT
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH----------------HHHHHHHHHHHHCC
Confidence 5433 1123568999999999999999996421 13456788888889
Q ss_pred ccccccc
Q psy8372 275 LKCVKSE 281 (883)
Q Consensus 275 f~vv~~~ 281 (883)
|......
T Consensus 193 ~~~~~~~ 199 (259)
T 3lpm_A 193 LEPKRIQ 199 (259)
T ss_dssp EEEEEEE
T ss_pred CceEEEE
Confidence 8876543
No 141
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.31 E-value=8.4e-12 Score=127.81 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...+..++++...|+.+..+.. ++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~i~~~~~ 152 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR--APFDAIIVTAA 152 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG--CCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC--CCccEEEEccc
Confidence 567899999999999999888874 469999999999999999988766566789999988754433 68999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ .+.++|||||++++....
T Consensus 153 ~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 999975 478999999999998854
No 142
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.30 E-value=6e-12 Score=125.40 Aligned_cols=119 Identities=11% Similarity=0.036 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+ +|+|+|+|+.|++. ..+++++++|+.+..+ . ++||+|+++..+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~-~--~~fD~i~~n~~~ 88 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSIN-Q--ESVDVVVFNPPY 88 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC-G--GGCSEEEECCCC
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcc-c--CCCCEEEECCCC
Confidence 46699999999999999887777 79999999999988 2356899999887322 2 589999999988
Q ss_pred cccChH-------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 214 MFILDE-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 214 ~hl~de-------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
++.++. +...++.++.+.| |||.+++..... ....++.++++++||+.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---------------CCHHHHHHHHHHCCCcEEEEEe
Confidence 865442 3457888999999 999999987422 2466889999999998876544
No 143
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.30 E-value=7.3e-12 Score=132.92 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
....+.++..+..... ...++.+|||||||+|..+..++..... +|+++|+|+.+++.|++++...+..+++++++|+
T Consensus 60 ~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~ 139 (249)
T 3g89_A 60 EVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA 139 (249)
T ss_dssp HHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH
T ss_pred HHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH
Confidence 3344556666543221 2246789999999999999888776443 8999999999999999998877666689999999
Q ss_pred CCCCCC-cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKPE-DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~~-~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
.++... ...++||+|+|..+ .+ +..+++.+.++|||||++++..... ......++...+.
T Consensus 140 ~~~~~~~~~~~~fD~I~s~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~-------------~~~e~~~~~~~l~ 200 (249)
T 3g89_A 140 EVLAREAGHREAYARAVARAV----AP--LCVLSELLLPFLEVGGAAVAMKGPR-------------VEEELAPLPPALE 200 (249)
T ss_dssp HHHTTSTTTTTCEEEEEEESS----CC--HHHHHHHHGGGEEEEEEEEEEECSC-------------CHHHHTTHHHHHH
T ss_pred HHhhcccccCCCceEEEECCc----CC--HHHHHHHHHHHcCCCeEEEEEeCCC-------------cHHHHHHHHHHHH
Confidence 877542 12368999999754 22 5689999999999999999866211 1112346777888
Q ss_pred hcccccccccC
Q psy8372 272 KANLKCVKSEK 282 (883)
Q Consensus 272 ~aGf~vv~~~~ 282 (883)
..|+++.....
T Consensus 201 ~~G~~~~~~~~ 211 (249)
T 3g89_A 201 RLGGRLGEVLA 211 (249)
T ss_dssp HHTEEEEEEEE
T ss_pred HcCCeEEEEEE
Confidence 88998876543
No 144
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.30 E-value=1.8e-11 Score=132.08 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHH-----hhccC-----CCccEEEccCCCCCCCc--
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ-SSKFIEQAKEEI-----LKDCD-----KLDKCYNVGIQDFKPED-- 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~-S~~~le~A~~~~-----~~~~~-----~~~~~~~~d~~~~~~~~-- 199 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+ |+.+++.|++++ ..... .++.+...+..+.....
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 356799999999999999887777658999999 899999999998 33222 24566655554421100
Q ss_pred --CCCCccEEEEcccccccChHHHHHHHHHHHHHhc---c--CcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 200 --LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILN---K--NGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 200 --~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LK---P--GG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
..++||+|++..+++|.++ ...+++.+.++|+ | ||.+++....... ........+...+++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~----------~~~~~~~~~~~~l~~ 225 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVTFTHHRP----------HLAERDLAFFRLVNA 225 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEEECC------------------CTHHHHHHHH
T ss_pred hccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEEEEeeec----------ccchhHHHHHHHHHh
Confidence 1358999999999999855 8899999999999 9 9998775422110 111124567778889
Q ss_pred cc-ccccccc
Q psy8372 273 AN-LKCVKSE 281 (883)
Q Consensus 273 aG-f~vv~~~ 281 (883)
+| |++....
T Consensus 226 ~G~f~v~~~~ 235 (281)
T 3bzb_A 226 DGALIAEPWL 235 (281)
T ss_dssp STTEEEEEEE
T ss_pred cCCEEEEEec
Confidence 99 9887653
No 145
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.30 E-value=9.5e-12 Score=134.10 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..++.. .++++++|+.++.. +++||+|++..
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~Vi~~~ 200 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEEEEECC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccEEEECC
Confidence 468899999999999999888887768999999999999999998876544 47899999998776 36899999965
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
... ...++.++.++|||||.+++.++..... ........+...+.++|+.+..
T Consensus 201 p~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred chh------HHHHHHHHHHHCCCCeEEEEEEeecccc---------ccccHHHHHHHHHHHcCCeeEE
Confidence 421 3468899999999999999988653211 0112345677888888887654
No 146
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.29 E-value=1.2e-11 Score=129.17 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC----CCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD----FKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++... .++.++.+|+.+ .+.. ++||+|
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~---~~~D~v 147 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV---EKVDVI 147 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS---CCEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC---ccEEEE
Confidence 567899999999999999888773 348999999999999999987654 567888888876 3322 589999
Q ss_pred EEcccccccCh-HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccC
Q psy8372 208 WIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEK 282 (883)
Q Consensus 208 vs~~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~ 282 (883)
+ +++++ +....+++++.++|||||++++.. ..... +...........++. ++.++||+++....
T Consensus 148 ~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~----~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 148 Y-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAI-KARSI----DVTKDPKEIFKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp E-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE-EGGGT----CSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred E-----EecCChhHHHHHHHHHHHhCCCCcEEEEEE-ecCCC----CCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence 8 44443 223678999999999999999972 21111 000000111235666 88999998876554
No 147
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.29 E-value=4.5e-12 Score=150.22 Aligned_cols=145 Identities=14% Similarity=-0.013 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.||||||||.|.++..++..|+. |+|||+|+.+++.|+.++...+...+++.++++.++.....+++||+|+|..+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 35679999999999999999988875 99999999999999999887654567899999887632111368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGE 284 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~ 284 (883)
++|+++.+....+..+.+.|+++|..++.........- .+......+|..+++.++|.....+.+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~------~~~p~~~~~~~~~i~~~~~~~~~~~~g~ 209 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPF------YWGVSQPDDPRELIEQCAFYRLIGEFDT 209 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSS------GGGGGSCSSGGGGTTTSSEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEeccccccc------cccCCCCccHHHhcCHHHHHHHHHHcCC
Confidence 99997744334456678889999987777654332211 1222233456666666666655555443
No 148
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.29 E-value=5.2e-12 Score=136.50 Aligned_cols=142 Identities=10% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~ 211 (883)
.++.+|||+|||||.++..++..+..+|+|+|+|+.|++.+.++... ...+...++..+.....+ .+||+|++..
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----v~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----VRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----EEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----cceecccCceecchhhCCCCCCCEEEEEe
Confidence 45779999999999999988888777899999999999986543211 101111222222221112 3599999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccC----C-cccccccchhhhhhhhhcccccccccCC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDD----E-DSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~----~-~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
+++++ ..++.+++++|||||.+++..-. .......... . ...+.....++..++.++||.+......
T Consensus 160 sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 160 SFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp SSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred eHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 88766 36999999999999999986311 1111111110 0 1112234568889999999998765443
No 149
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.28 E-value=1.2e-11 Score=129.67 Aligned_cols=145 Identities=10% Similarity=-0.030 Sum_probs=101.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccE
Q psy8372 130 KSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDV 206 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDl 206 (883)
....+|++|||+|||+|.++..++.. |.. .|+|+|+|+.|++.+++++... .++..+..|...... ....+++|+
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEE
Confidence 34578999999999999999988876 444 8999999999999999887643 456778777765432 122468999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
|++.. .|. ++...++.+++++|||||++++......... ...... ....-.+.++++||+++....-..+
T Consensus 151 Vf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~---~~p~~~---~~~~ev~~L~~~GF~l~e~i~L~pf 220 (233)
T 4df3_A 151 LYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDV---TTEPSE---VYKREIKTLMDGGLEIKDVVHLDPF 220 (233)
T ss_dssp EEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHH---HTCCCH---HHHHHHHHHHHTTCCEEEEEECTTT
T ss_pred EEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCC---CCChHH---HHHHHHHHHHHCCCEEEEEEccCCC
Confidence 98743 343 3477899999999999999999763321110 000000 1123456678899998876554433
No 150
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.28 E-value=6.9e-12 Score=130.39 Aligned_cols=109 Identities=10% Similarity=0.051 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~~ 211 (883)
++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++...+..++.++++|+.++.+. ..+++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4679999999999999988887654 7999999999999999998877767789999998774210 1136999999985
Q ss_pred cccccChHHH------HHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDI------IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~------~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+...... ..++++++++|||||.+++.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 5443322111 259999999999999999987
No 151
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.28 E-value=2.1e-11 Score=135.21 Aligned_cols=103 Identities=25% Similarity=0.242 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|+++....+. .+++++.+|+.++.... ++||+|++..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV--EKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC--SCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC--CcEEEEEEcC
Confidence 46789999999999999988888766899999997 99999998876644 56789999998875443 6899999987
Q ss_pred c---ccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 212 V---LMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 212 v---L~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+ +.|. ..+..++.++.++|||||.++.
T Consensus 140 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 140 MGYFLLFE--SMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CBTTBTTT--CHHHHHHHHHHHHEEEEEEEES
T ss_pred chhhccCH--HHHHHHHHHHHhhcCCCcEEEc
Confidence 4 4444 3477899999999999999873
No 152
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.28 E-value=1.9e-12 Score=132.09 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++..... .++++++|+.+.... ...++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 46789999999999999988888654 799999999999999998876544 557777887662221 01268999999
Q ss_pred ccccccc------ChHH------------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchh
Q psy8372 210 QWVLMFI------LDED------------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265 (883)
Q Consensus 210 ~~vL~hl------~ded------------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~ 265 (883)
+..+++. +.+. +..++++++++|||||++++.... ......
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~~ 172 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---------------HNQADE 172 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---------------TSCHHH
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---------------CccHHH
Confidence 7554332 2111 168899999999999995444421 123557
Q ss_pred hhhhhh--hccccccccc
Q psy8372 266 FCLLFS--KANLKCVKSE 281 (883)
Q Consensus 266 ~~~l~~--~aGf~vv~~~ 281 (883)
+..++. ++||..+...
T Consensus 173 ~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 173 VARLFAPWRERGFRVRKV 190 (215)
T ss_dssp HHHHTGGGGGGTEECCEE
T ss_pred HHHHHHHhhcCCceEEEE
Confidence 788888 8998766543
No 153
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.27 E-value=3.4e-12 Score=128.62 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=98.3
Q ss_pred HHHHHHhhhcCCCccccccccCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEe
Q psy8372 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164 (883)
Q Consensus 86 ~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD 164 (883)
|++..+.+++..-.++..+....+.. ........+....... .++..+|||+|||+|.++..++...+. +|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~H~STR-eRLp~ld~fY~~~~~~---l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~D 80 (200)
T 3fzg_A 5 WDKLLKKYNQGQLSIEDLLKIHSSTN-ERVATLNDFYTYVFGN---IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD 80 (200)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHSHHHH-TTGGGHHHHHHHHHHH---SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHHHHHHHhhhhHHHHHhhCCCHH-HHhHhHHHHHHHHHhh---cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEe
Confidence 44455556655555554444211111 0112233333332211 145779999999999999877665333 899999
Q ss_pred CCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 165 QSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 165 ~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+.|++.|++++...+.. ++++ .|.....+ +++||+|++..++||+ ++....+.++++.|+|||.++-..
T Consensus 81 i~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~---~~~~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 81 IDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY---KGTYDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp SCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT---TSEEEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCccEEE--ecccccCC---CCCcChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999876554 3333 55543322 3689999999999999 346677789999999999888766
No 154
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.27 E-value=1.2e-10 Score=128.86 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccC--------CCCC------CccceeccCCC----------CceeeE--ecCH
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKR--------TPGG------AREFVVPTHEP----------NKFYSL--VQSP 404 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~--------~~~g------a~~f~v~~~~~----------~~~~~L--~~Sp 404 (883)
.+.+.+.+|++| ...||.||.+|.+... .+.. ...|.+..... .....| ++||
T Consensus 103 ~~~~~~~Ir~~f-~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 103 ITLMERELVEIF-RALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHH-HHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 567889999999 5899999999999652 1111 12243431111 122234 4788
Q ss_pred HHHHHHHHccCCC-cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 405 QQLKQLLMVGSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 405 ql~kq~l~~~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.+..-+ ..+..+ |+|+||+|||+|..+.+|.|||+|+|+.+++. |+.+++..++.+++.+
T Consensus 182 ~llr~l-~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 MQVRYM-VAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HHHHHH-HHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 766443 223333 89999999999887777889999999999886 5677777766666554
No 155
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.27 E-value=1.6e-11 Score=136.68 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|+++....+. .+++++.+|+.++... ++||+|++..
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---~~~D~Ivs~~ 124 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEP 124 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEEECC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC---CceeEEEEeC
Confidence 46789999999999999988887766899999996 88999998876644 5678999999887543 4899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++|+..+.....+.+++++|||||.+++..
T Consensus 125 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 125 MGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred chhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999876667788889999999999998654
No 156
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.26 E-value=3.7e-11 Score=124.84 Aligned_cols=99 Identities=21% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++..... +++++.+|+.+..+. .++||+|++..+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~--~~~fD~v~~~~~ 143 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE--EKPYDRVVVWAT 143 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG--GCCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc--CCCccEEEECCc
Confidence 567899999999999999888877 579999999999999999887544 668889998763322 368999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++|+++ ++.++|||||++++....
T Consensus 144 ~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 144 APTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp BSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred HHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 999863 488899999999998754
No 157
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.26 E-value=9.7e-12 Score=127.43 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++......+++++++|+.++.+.. .++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~-~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-GTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC-CCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc-CCCCCEEEECCCC
Confidence 467999999999999998888877689999999999999999988765556789999987643322 3689999998774
Q ss_pred cccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 214 MFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
+ .. ....+++.+.+ +|+|||.+++....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 4 32 35677888865 59999999998754
No 158
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.25 E-value=1.7e-11 Score=136.54 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++++|+.+++... ++||+|++..
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~Iis~~ 141 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPV--EKVDIIISEW 141 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS--SCEEEEEECC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCC--CceEEEEEcc
Confidence 3678999999999999998888877689999999 499999999887644 34789999999875443 6899999987
Q ss_pred cccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 212 VLMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 212 vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+.+++.. +.+..++.++.++|||||.++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 6555422 34788999999999999998843
No 159
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.25 E-value=3.9e-12 Score=126.85 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-cCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-DLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~FDlVvs~ 210 (883)
..++.+|||+|||. | ++|+|+.|++.|+++... .+++.++|+.+++.. ..+++||+|+|.
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence 35788999999996 2 389999999999988643 268899999877541 013689999999
Q ss_pred cccccc-ChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 211 WVLMFI-LDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 211 ~vL~hl-~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
.++||+ ++ +..++++++++|||||++++..+..... ....+.++..++.++++++||
T Consensus 71 ~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAV------DNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSS------CSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccC--HHHHHHHHHHHCCCCEEEEEEccccccc------ccccccCCHHHHHHHHHHCCC
Confidence 999999 66 6799999999999999999976532211 112333467899999999999
No 160
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.25 E-value=2.9e-11 Score=126.30 Aligned_cols=143 Identities=13% Similarity=-0.039 Sum_probs=97.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++... . .+|+|+|+|+.|++.+.+++... .++.++.+|+.+... ....++||+|+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence 3567899999999999999888763 2 47999999999988888777654 456888999877421 11236899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccccCCCCC
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFS 286 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~~~~~~ 286 (883)
+... . .+....++.++.++|||||.+++........ .. ...... ...+ .++++++||+++....-..+
T Consensus 153 ~~~~--~--~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~---~~-~~~~~~-~~~~-~~~l~~~Gf~~~~~~~~~~~ 220 (233)
T 2ipx_A 153 ADVA--Q--PDQTRIVALNAHTFLRNGGHFVISIKANCID---ST-ASAEAV-FASE-VKKMQQENMKPQEQLTLEPY 220 (233)
T ss_dssp ECCC--C--TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC---SS-SCHHHH-HHHH-HHTTGGGTEEEEEEEECTTT
T ss_pred EcCC--C--ccHHHHHHHHHHHHcCCCeEEEEEEcccccc---cC-CCHHHH-HHHH-HHHHHHCCCceEEEEecCCc
Confidence 9655 1 1234567899999999999999965431100 00 000000 1122 58889999998875443333
No 161
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.25 E-value=1.1e-11 Score=138.41 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+..+|||||||+|.++..++...+. +++++|+ +.+++.|++ ...++++..|+.+ + .. .||+|++..+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~~---~~D~v~~~~v 260 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-S-IP---SADAVLLKWV 260 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-C-CC---CCSEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-C-CC---CceEEEEccc
Confidence 4579999999999999988888655 7999999 788877654 1336888888876 2 22 4999999999
Q ss_pred ccccChHHHHHHHHHHHHHhcc---CcEEEEEecccCCCccc---------cc----CCcccccccchhhhhhhhhcccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNK---NGIIIIKDNVASGVKNE---------YD----DEDSSVVRSLPQFCLLFSKANLK 276 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKP---GG~lvi~~~~~~~~~~~---------~~----~~~~~~~~s~~~~~~l~~~aGf~ 276 (883)
+||+++++...++++++++||| ||++++.+......... ++ .......++..+|.++++++||+
T Consensus 261 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 261 LHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence 9999887677999999999999 99999988764322110 00 01122345788999999999999
Q ss_pred cccccC
Q psy8372 277 CVKSEK 282 (883)
Q Consensus 277 vv~~~~ 282 (883)
++....
T Consensus 341 ~~~~~~ 346 (358)
T 1zg3_A 341 SYKITP 346 (358)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 887644
No 162
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.25 E-value=3.5e-11 Score=124.29 Aligned_cols=104 Identities=20% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.+.+.+... .++.++.+|+..... ....++||+|+++
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 5678999999999999988877642 37999999999887776655532 345677777766310 1112689999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. .++ ++...++++++++|||||++++..
T Consensus 134 ~-~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-AQK---NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-CST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCh---hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 222 235567999999999999999985
No 163
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.25 E-value=1.2e-11 Score=133.06 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCh----HHHHHHHh-CC----CeEEEEeCCHHHHHHHHHHHhhc----------------------c-
Q psy8372 134 GKTRVLDVGAGIGR----ISKYLLAK-HF----DKIDLLEQSSKFIEQAKEEILKD----------------------C- 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~----~~~~l~~~-g~----~~V~gvD~S~~~le~A~~~~~~~----------------------~- 181 (883)
++.+|||+|||||. ++..++.. +. .+|+|+|+|+.|++.|++..-.. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 45444443 21 27999999999999999864100 0
Q ss_pred --------CCCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 182 --------DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 182 --------~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...+.|.+.|+.+.+.. ..++||+|+|.++++|+.++...+++++++++|+|||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 02468899998874322 1358999999999999988777899999999999999999854
No 164
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.25 E-value=2.6e-11 Score=123.77 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++.... .+|+|+|+|+.+++.|+++.......++++...|+.+..+ .++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~ 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---EPPFDGVISRAF 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---CSCEEEEECSCS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---cCCcCEEEEecc
Confidence 467999999999999998887643 3799999999999999999887655557899999987653 258999998643
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+ +..++..+.++|+|||.+++..
T Consensus 142 ----~~--~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ----AS--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SS--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 22 6689999999999999999985
No 165
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.25 E-value=2.2e-11 Score=136.93 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=90.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++++|+.++... ++||+|++.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Iv~~ 136 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDVIISE 136 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEEEEEC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---CcceEEEEc
Confidence 35678999999999999998888887689999999 999999999887643 4478999999887644 589999998
Q ss_pred ccccccCh-HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILD-EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+.+++.. ..+..++.++.++|||||.+++...
T Consensus 137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred ChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 76666643 3477899999999999999987653
No 166
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.24 E-value=4.9e-11 Score=125.05 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
......++..+. .....++.+|||+|||+|.++..++.. +.. +|+|+|+|+.|++...+.+... .++.++.+|+
T Consensus 59 skla~~ll~~l~--~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da 134 (232)
T 3id6_C 59 SKLAGAILKGLK--TNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADA 134 (232)
T ss_dssp CHHHHHHHTTCS--CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCT
T ss_pred HHHHHHHHhhhh--hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEccc
Confidence 334444444441 123467899999999999999888765 322 7999999999986655544432 4568889998
Q ss_pred CCCCC-CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKP-EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~-~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
..... ....++||+|++..+. ++ ....+...+.++|||||+|++........ ...... .........++
T Consensus 135 ~~~~~~~~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d-~t~~~~-----e~~~~~~~~L~ 204 (232)
T 3id6_C 135 RFPQSYKSVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSID-VTKDPK-----EIYKTEVEKLE 204 (232)
T ss_dssp TCGGGTTTTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC--------CCSS-----SSTTHHHHHHH
T ss_pred ccchhhhccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcc-cCCCHH-----HHHHHHHHHHH
Confidence 75432 1123689999998654 22 23345566677999999999985322100 000000 01234456777
Q ss_pred hcccccccccCC
Q psy8372 272 KANLKCVKSEKG 283 (883)
Q Consensus 272 ~aGf~vv~~~~~ 283 (883)
++||+++....-
T Consensus 205 ~~gf~~~~~~~l 216 (232)
T 3id6_C 205 NSNFETIQIINL 216 (232)
T ss_dssp HTTEEEEEEEEC
T ss_pred HCCCEEEEEecc
Confidence 889998876543
No 167
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.24 E-value=7.8e-12 Score=124.52 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..... .+++++.+|+.+..+. .+++||+|+++.
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-hcCCCCEEEECC
Confidence 45779999999999999988887666899999999999999999876543 3567888888764221 125799999987
Q ss_pred cccccChHHHHHHHHHHH--HHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~ 245 (883)
.+++ ......++.+. ++|||||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 7542 22456677776 9999999999988544
No 168
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.23 E-value=1.6e-11 Score=122.86 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC--cCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE--DLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..... .+++++++|+.+..+. ..+++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 35779999999999999988877666899999999999999999876643 3568899998764321 00358999999
Q ss_pred cccccccChHHHHHHHHHH--HHHhccCcEEEEEecccC
Q psy8372 210 QWVLMFILDEDIIKFLNLC--KQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~--~r~LKPGG~lvi~~~~~~ 246 (883)
+..++.. . ....+..+ .++|+|||.+++......
T Consensus 123 ~~~~~~~-~--~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQ-E--IVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGC-C--HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCch-h--HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 8875422 2 34566666 889999999999876543
No 169
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=3.4e-11 Score=119.51 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|+++....+..+++++..|+.+. ... ++||+|++..+
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV-LDK--LEFNKAFIGGT 109 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH-GGG--CCCSEEEECSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc-ccC--CCCcEEEECCc
Confidence 4677999999999999987776 4457999999999999999998876555678899988762 222 58999999988
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
.+ +..++++++++ |||.+++.++.. ....++.+.++++|+.+..
T Consensus 110 ----~~--~~~~l~~~~~~--~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 110 ----KN--IEKIIEILDKK--KINHIVANTIVL---------------ENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp ----SC--HHHHHHHHHHT--TCCEEEEEESCH---------------HHHHHHHHHHHHTTCEEEE
T ss_pred ----cc--HHHHHHHHhhC--CCCEEEEEeccc---------------ccHHHHHHHHHHcCCeEEE
Confidence 22 56789999988 999999988432 1345678888888876543
No 170
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.23 E-value=5.5e-12 Score=124.18 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++..+.. |+|+|+|+.+++.|++++..... ++++++.|+.+..+. ...++||+|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999988888766 99999999999999999876654 668888888764221 1023799999998
Q ss_pred cccccChHHHHHHHHHHH--HHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCK--QILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~--r~LKPGG~lvi~~~~~~ 246 (883)
+++ .. ...+++.+. ++|||||.+++......
T Consensus 119 ~~~--~~--~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA--MD--LAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT--SC--TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc--hh--HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 765 22 234555555 99999999999886543
No 171
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.23 E-value=2.6e-11 Score=130.18 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++... +..++++..+|+.+..+ +++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---~~~fD~Vi~ 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---DQMYDAVIA 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---SCCEEEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---CCCccEEEE
Confidence 56789999999999999988876 3 237999999999999999998765 55567889999887322 258999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
|+++ +..+++++.++|||||.+++.++.. .....+...+.++||..+..
T Consensus 186 -----~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~---------------~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 186 -----DIPD--PWNHVQKIASMMKPGSVATFYLPNF---------------DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp -----CCSC--GGGSHHHHHHTEEEEEEEEEEESSH---------------HHHHHHHHHSGGGTEEEEEE
T ss_pred -----cCcC--HHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCeEEEE
Confidence 4544 5689999999999999999998432 12346677788889877654
No 172
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=4.5e-11 Score=122.79 Aligned_cols=102 Identities=15% Similarity=0.019 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++.......++.+...|+....+. .++||+|++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~ 153 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP--LAPYDRIYTT 153 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG--GCCEEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC--CCCeeEEEEC
Confidence 5678999999999999998887763 47999999999999999988766555578888887543321 3589999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++|+++ ++.++|||||.+++....
T Consensus 154 ~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 154 AAGPKIPE--------PLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SBBSSCCH--------HHHHTEEEEEEEEEEESS
T ss_pred CchHHHHH--------HHHHHcCCCcEEEEEECC
Confidence 99999853 688999999999998743
No 173
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.22 E-value=5.7e-11 Score=133.49 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCC---CccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDK---LDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||+|||+|.++..++..++ .+|+|+|+|+.|++.|++++...+.. .++++..|+.+..+ +++||+|+
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~---~~~fD~Ii 297 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---PFRFNAVL 297 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC---TTCEEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC---CCCeeEEE
Confidence 3457999999999999998988863 38999999999999999998766432 35778999887432 35899999
Q ss_pred Eccccccc---ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 209 IQWVLMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++..+|+. .+.....+++++.++|||||.+++..+.
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99998863 2333457899999999999999998743
No 174
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.21 E-value=4.3e-11 Score=126.43 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhccCCC-ccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++...+... +++...|+.+..+ +++||+|++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~v~~ 168 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---EENVDHVIL 168 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---CCSEEEEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---CCCcCEEEE
Confidence 56789999999999999988887 4 3379999999999999999987765443 7889999886532 257999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc--ccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN--LKCVKSE 281 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG--f~vv~~~ 281 (883)
. .++ +..+++++.++|||||.+++..+.. ....++...++++| |..+...
T Consensus 169 ~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 169 D-----LPQ--PERVVEHAAKALKPGGFFVAYTPCS---------------NQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp C-----SSC--GGGGHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred C-----CCC--HHHHHHHHHHHcCCCCEEEEEECCH---------------HHHHHHHHHHHHcCCCccccEEE
Confidence 3 333 5578999999999999999987432 13456778888898 8766543
No 175
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.21 E-value=1.2e-11 Score=137.41 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|+++....... .+++..|+.+.. +++||+|+++.+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----~~~fD~Iv~~~~ 270 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----KGRFDMIISNPP 270 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----CSCEEEEEECCC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----cCCeeEEEECCC
Confidence 4569999999999999988888764 8999999999999999998765433 467888876643 358999999999
Q ss_pred cccc---ChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFI---LDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl---~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|+. ..++...++++++++|||||.+++..+.
T Consensus 271 ~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 271 FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9863 3355789999999999999999998753
No 176
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.20 E-value=3.8e-11 Score=126.23 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhh------ccCCCccEEEccCCC-CC--CCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILK------DCDKLDKCYNVGIQD-FK--PEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~------~~~~~~~~~~~d~~~-~~--~~~~~~ 202 (883)
.++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++.. ....++.++++|+.+ ++ .. ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~--~~ 122 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KG 122 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC--TT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC--Cc
Confidence 35668999999999999988777544 799999999999999987653 234567899999987 32 22 36
Q ss_pred CccEEEEcccccccChHH------HHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDED------IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded------~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||.|++...-.+..... ...++++++++|||||.|++.+
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 899998765433321100 1379999999999999999986
No 177
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.20 E-value=3.9e-11 Score=131.03 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhh----ccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++.. ....+++++.+|+.++.....+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 456799999999999999887653 34899999999999999998742 1345678899998765432113689999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++....++.+...+ ..++++++++|||||++++...... ........+.+.++++||..+...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-----------~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-----------LDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT-----------TCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-----------cchHHHHHHHHHHHhCCCCcEEEE
Confidence 99877665443222 5899999999999999999863210 111235578889999999877544
No 178
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.20 E-value=6.3e-11 Score=130.04 Aligned_cols=101 Identities=22% Similarity=0.115 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||||||+|.++..++..+.. +|+|+|+|+.+++.|++++...+..++++...|+.+..+.. ++||+|++.
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~--~~fD~Iv~~ 151 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF--SPYDVIFVT 151 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG--CCEEEEEEC
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC--CCeEEEEEc
Confidence 56789999999999999988877542 69999999999999999988766556789999988754433 689999999
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+++|++ +.+.++|||||++++...
T Consensus 152 ~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 152 VGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 9999996 357889999999999863
No 179
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.20 E-value=2.7e-11 Score=125.53 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC----CCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL----NIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~----~~~FDl 206 (883)
++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+... .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 56799999999999999887642 23799999999999999999887654 357899999755322111 158999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
|++....++..+ ...++..+ ++|||||++++.+...
T Consensus 138 V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCC
Confidence 999988877743 55777777 9999999999877543
No 180
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.19 E-value=6.6e-11 Score=124.83 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++... +..++++...|+.+.+... ++||+|++
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~--~~~D~v~~ 172 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE--AAYDGVAL 172 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT--TCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC--CCcCEEEE
Confidence 56789999999999999988877 4 347999999999999999998765 4556788999988763332 58999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
. .++ +..+++++.++|+|||.+++..+... ...+....++++||..+.
T Consensus 173 ~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 173 D-----LME--PWKVLEKAALALKPDRFLVAYLPNIT---------------QVLELVRAAEAHPFRLER 220 (258)
T ss_dssp E-----SSC--GGGGHHHHHHHEEEEEEEEEEESCHH---------------HHHHHHHHHTTTTEEEEE
T ss_pred C-----CcC--HHHHHHHHHHhCCCCCEEEEEeCCHH---------------HHHHHHHHHHHCCCceEE
Confidence 3 333 45789999999999999999884321 234566677778887654
No 181
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.19 E-value=3.9e-11 Score=125.52 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+...+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 56799999999999999887743 23799999999999999999887654 36789999997754301136899999875
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
... ....+++.+.++|||||++++.+..+.
T Consensus 151 ~~~-----~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 151 AKA-----QSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp TSS-----SHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred cHH-----HHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 432 256799999999999999998775543
No 182
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.18 E-value=3.1e-12 Score=134.02 Aligned_cols=103 Identities=11% Similarity=-0.049 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...+. .+++++++|+.++.+ +++||+|+++.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---FLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---GCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---cCCCCEEEECCC
Confidence 67899999999999999888876 5699999999999999999887654 467899999987652 358999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|..+ ....+.+++++|+|||.+++..
T Consensus 154 ~~~~~~--~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDY--ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGG--GGSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcch--hhhHHHHHHhhcCCcceeHHHH
Confidence 999865 4457788999999999977654
No 183
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.18 E-value=3.7e-11 Score=125.10 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccC
Q psy8372 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGI 192 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~ 192 (883)
....++..+.... ...++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+.. +++++.+|+
T Consensus 40 ~~~~~l~~l~~~~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda 118 (221)
T 3dr5_A 40 MTGQLLTTLAATT-NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHHHHHS-CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred HHHHHHHHHHHhh-CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence 3445555554321 112345999999999999998887532 37999999999999999998876543 678899888
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
.+..+...+++||+|++..... +...+++++.++|||||++++.+..+.+
T Consensus 119 ~~~l~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~~g 168 (221)
T 3dr5_A 119 LDVMSRLANDSYQLVFGQVSPM-----DLKALVDAAWPLLRRGGALVLADALLDG 168 (221)
T ss_dssp HHHGGGSCTTCEEEEEECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTGGG
T ss_pred HHHHHHhcCCCcCeEEEcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence 7654321136899999876432 2567899999999999999997765543
No 184
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.18 E-value=7.6e-11 Score=124.52 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=88.9
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh--CC-CeEEEEeCCHHHHHHHHHHHhhc---cCC-C-------
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--HF-DKIDLLEQSSKFIEQAKEEILKD---CDK-L------- 184 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--g~-~~V~gvD~S~~~le~A~~~~~~~---~~~-~------- 184 (883)
..++..+.... ...++.+|||+|||+|.++..++.. .. .+|+|+|+|+.|++.|++++... ... .
T Consensus 37 ~~l~~~~l~~~-~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 37 TEIFQRALARL-PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHHTS-SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 34555544322 1135679999999999999988776 22 37999999999999999876543 111 1
Q ss_pred ------------------cc-------------EEEccCCCCCCC---cCCCCccEEEEcccccccCh-------HHHHH
Q psy8372 185 ------------------DK-------------CYNVGIQDFKPE---DLNIKYDVIWIQWVLMFILD-------EDIIK 223 (883)
Q Consensus 185 ------------------~~-------------~~~~d~~~~~~~---~~~~~FDlVvs~~vL~hl~d-------ed~~~ 223 (883)
++ +.++|+.+.... ...++||+|+|+..+.+... +....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 45 889998764320 01248999999887665532 45679
Q ss_pred HHHHHHHHhccCcEEEEEec
Q psy8372 224 FLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 224 ~l~~~~r~LKPGG~lvi~~~ 243 (883)
++++++++|||||++++...
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEeCc
Confidence 99999999999999999553
No 185
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.18 E-value=5.4e-11 Score=137.82 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++...+. .+++++.+|+.++... ++||+|++..
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~---~~fD~Ivs~~ 232 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEP 232 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC---CCeEEEEEeC
Confidence 45779999999999999988776666899999998 99999998877654 5679999999886433 4899999998
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+++|+.+++....+.+++++|||||.+++..
T Consensus 233 ~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 233 MGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred chHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 8888876667788889999999999998643
No 186
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=1e-10 Score=123.81 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC-cCCCCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE-DLNIKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~-~~~~~FDlVvs 209 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+.. +++++.+|+.+..+. ...++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 567999999999999998877633 37999999999999999998876543 678999998663221 21248999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.... .....+++++.++|||||++++.+....
T Consensus 143 d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DADK-----PNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCG-----GGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCch-----HHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 6532 3366799999999999999999876554
No 187
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.17 E-value=7.7e-12 Score=131.36 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++..... ..++.++.. .++.. ..||.+.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~d~~~~ 109 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--ADFEQ----GRPSFTSI 109 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GGCCS----CCCSEEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hHcCc----CCCCEEEE
Confidence 4567999999999999998888876689999999999999887544210 011122221 11110 12566655
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecc-cCCCcccccC-----CcccccccchhhhhhhhhcccccccccCC
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV-ASGVKNEYDD-----EDSSVVRSLPQFCLLFSKANLKCVKSEKG 283 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~-~~~~~~~~~~-----~~~~~~~s~~~~~~l~~~aGf~vv~~~~~ 283 (883)
..++.++ ..++++++++|||||.+++.... .......... ....+..+.+++.++++++||+++.....
T Consensus 110 D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 110 DVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp CCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred EEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 5555554 36999999999999999986411 0000000000 11122336678999999999998876544
No 188
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.17 E-value=7.6e-11 Score=130.08 Aligned_cols=105 Identities=24% Similarity=0.248 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++...+. ..++++.+|+.++.... ++||+|++..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~D~Ivs~~~ 114 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWM 114 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSS--SCEEEEEECCC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCC--CcccEEEEeCc
Confidence 577999999999999998888776689999999 699999998876643 45789999998876442 68999999876
Q ss_pred ccccCh-HHHHHHHHHHHHHhccCcEEEEE
Q psy8372 213 LMFILD-EDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 213 L~hl~d-ed~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.+++.. ..+..++.++.++|||||.++..
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 555432 33778999999999999999743
No 189
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.16 E-value=9.9e-11 Score=122.24 Aligned_cols=126 Identities=16% Similarity=0.044 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++. ..+++..+|..+..... ++||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~--~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA--DNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc--cccCEEEEe
Confidence 46789999999999999988888754 799999999999999999987754 45789999988765432 379999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
++.-. -...++....+.|+++|+|+++... ....++.++.+.||.++...
T Consensus 98 GmGg~----lI~~IL~~~~~~l~~~~~lIlqp~~-----------------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 98 GMGGR----LIADILNNDIDKLQHVKTLVLQPNN-----------------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EECHH----HHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCchH----HHHHHHHHHHHHhCcCCEEEEECCC-----------------ChHHHHHHHHHCCCEEEEEE
Confidence 65443 3778999999999999999988731 25588999999999998765
No 190
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.16 E-value=9.5e-11 Score=123.34 Aligned_cols=126 Identities=12% Similarity=-0.010 Sum_probs=102.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++. ..+++..+|..+..... ++||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~--~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK--DAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc--ccccEEEEe
Confidence 56789999999999999988887754 799999999999999999987754 45789999987755432 359999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+.- +-...++....+.|+++|+|+++... ....++.++.+.||.++...
T Consensus 98 gmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~-----------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 98 GMGG----TLIRTILEEGAAKLAGVTKLILQPNI-----------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EECH----HHHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHHTEEEEEEE
T ss_pred CCch----HHHHHHHHHHHHHhCCCCEEEEEcCC-----------------ChHHHHHHHHHCCCEEEEEE
Confidence 5543 33778999999999999999998731 25588999999999987654
No 191
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.16 E-value=1.1e-11 Score=131.11 Aligned_cols=164 Identities=14% Similarity=0.009 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhcccC-CCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCC
Q psy8372 117 TSNQFLSSLYCQKKS-DPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQ 193 (883)
Q Consensus 117 ~~~~lL~~l~~~~~~-~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~ 193 (883)
....++..+...... ..++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++...... .++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344455555432111 0256799999999999998777663 247999999999999999998866443 4789999976
Q ss_pred CC-C-CCcC--CCCccEEEEcccccccCh-------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc
Q psy8372 194 DF-K-PEDL--NIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED 256 (883)
Q Consensus 194 ~~-~-~~~~--~~~FDlVvs~~vL~hl~d-------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~ 256 (883)
+. . +... +++||+|+++..+++... +....++.+++++|||||.+.+................
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g 206 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLR 206 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBS
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceE
Confidence 52 2 1111 158999999876665430 01235678899999999988775432111000000000
Q ss_pred -----ccccccchhhhhhhhhcccccccc
Q psy8372 257 -----SSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 257 -----~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
........++.++++++||+.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 235 (254)
T 2h00_A 207 WYSCMLGKKCSLAPLKEELRIQGVPKVTY 235 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCChhHHHHHHHHHHHcCCCceEE
Confidence 011112357788899999987654
No 192
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.16 E-value=4.6e-11 Score=133.68 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHh-------hcc--CCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEIL-------KDC--DKL 184 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~-------~~~--~~~ 184 (883)
......+++.+. ..++.+|||||||+|.++..++... ..+|+|||+|+.|++.|+++.. ..+ ...
T Consensus 159 ~~~i~~il~~l~-----l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r 233 (438)
T 3uwp_A 159 FDLVAQMIDEIK-----MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 233 (438)
T ss_dssp HHHHHHHHHHHC-----CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 334444444442 3578899999999999998877653 3369999999999999987542 122 256
Q ss_pred ccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 185 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++++++|+.+.+....-..||+|+++.+++ . +++...|.+++++|||||+|++.+....
T Consensus 234 Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 234 YTLERGDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp EEEEECCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred eEEEECcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 799999998865321003699999987763 3 4578899999999999999999876543
No 193
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.16 E-value=9.3e-11 Score=124.85 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++.. .+.+...|+.+++... ++||+|++..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~--~~fD~v~~~~ 156 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----QVTFCVASSHRLPFSD--TSMDAIIRIY 156 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTSCSBCT--TCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----CcEEEEcchhhCCCCC--CceeEEEEeC
Confidence 357799999999999999887763 2379999999999999988753 3478888888765433 6899999876
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+. ..++++.++|||||.+++.++..
T Consensus 157 ~~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 157 AP---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp CC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred Ch---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 53 24788999999999999998654
No 194
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.15 E-value=1.1e-10 Score=121.72 Aligned_cols=126 Identities=14% Similarity=-0.011 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
+++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++..++.. ++++..+|..+..+.. ++||+|+..
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~--~~~D~Ivia 91 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET--DQVSVITIA 91 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC--cCCCEEEEc
Confidence 46789999999999999988887754 8999999999999999999887653 5789999986433222 269999876
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
.+-- +-...++..+...|+|+|++++.... .....+.++.+.||.++...
T Consensus 92 G~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~~-----------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 92 GMGG----RLIARILEEGLGKLANVERLILQPNN-----------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EECH----HHHHHHHHHTGGGCTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEEEEE
T ss_pred CCCh----HHHHHHHHHHHHHhCCCCEEEEECCC-----------------CHHHHHHHHHHCCCEEEEEE
Confidence 5533 23678999999999999999997631 35688899999999998764
No 195
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.15 E-value=2.1e-10 Score=120.03 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++....+..++.+..+|+.. .... ..+||+|++..+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-GFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGG-GCCEEEEEECSB
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-CCCC-CCCccEEEECCc
Confidence 46779999999999999988877535699999999999999999877655557888888732 2221 246999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++++++ ++.++|||||.+++....
T Consensus 168 ~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 168 APKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred HHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 999853 578899999999998854
No 196
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.14 E-value=7.5e-11 Score=122.02 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcC----CCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDL----NIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~----~~~FDl 206 (883)
++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...+.. .++++++|+.+..+... .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 56799999999999999887763 247999999999999999998776543 47889988865422110 158999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...+++++.++|||||++++.+....+
T Consensus 144 v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~g 179 (225)
T 3tr6_A 144 IYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVLRRG 179 (225)
T ss_dssp EEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred EEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence 9976532 33678999999999999999998866543
No 197
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.14 E-value=1.8e-10 Score=127.32 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d 191 (883)
++......+...... ..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|++++...... .++++++|
T Consensus 136 dq~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D 211 (332)
T 2igt_A 136 EQIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED 211 (332)
T ss_dssp GGHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred HHHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc
Confidence 444444445554321 13567999999999999998888877 7999999999999999998876543 36889999
Q ss_pred CCCCCCCc--CCCCccEEEEccc----------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 192 IQDFKPED--LNIKYDVIWIQWV----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 192 ~~~~~~~~--~~~~FDlVvs~~v----------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+.++.... ..++||+|++... +++. +++..++..+.++|||||.+++....
T Consensus 212 ~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 212 AMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 87654210 0258999999543 1222 34788999999999999998887644
No 198
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.14 E-value=1.5e-10 Score=127.01 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.+++.+++++...+..++.++++|+.++... +++||+|++.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~--~~~fD~Il~d 194 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL--NVEFDKILLD 194 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG--CCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc--cccCCEEEEe
Confidence 5678999999999999998887642 37999999999999999998877666678899998876542 3689999984
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
. ++++.++ + ....+++++.++|||||++++++...... .+......++
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------------Ene~~v~~~l 262 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------ENEFVIQWAL 262 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------GTHHHHHHHH
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH------------HhHHHHHHHH
Confidence 3 3333221 1 12589999999999999999988533211 1223456677
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++.||+.+..
T Consensus 263 ~~~~~~~~~~ 272 (315)
T 1ixk_A 263 DNFDVELLPL 272 (315)
T ss_dssp HHSSEEEECC
T ss_pred hcCCCEEecC
Confidence 7788877643
No 199
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.12 E-value=2e-10 Score=122.39 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhh---ccCC-CccEEEccCCCCCC-----CcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILK---DCDK-LDKCYNVGIQDFKP-----EDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~---~~~~-~~~~~~~d~~~~~~-----~~~~~ 202 (883)
.++.+|||+|||+|.++..++..... +|+|+|+++.+++.|++++.. .... +++++++|+.++.+ ...++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 45679999999999999988888644 899999999999999999876 4332 46889999987621 01136
Q ss_pred CccEEEEccccccc----------------ChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFI----------------LDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl----------------~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+|+++..+... ....+..+++.+.++|||||.+++..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 89999998443321 11236789999999999999999875
No 200
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.12 E-value=8.1e-11 Score=121.72 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC---cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE---DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~---~~~~~FDlV 207 (883)
++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...+. .+++++.+|+.+..+. ...++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 567999999999999998877642 3799999999999999999876654 3478899988654221 001479999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
++..... ....+++++.++|||||++++.+....
T Consensus 138 ~~d~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 138 FIDADKQ-----NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EECSCGG-----GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEcCCcH-----HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9876532 356899999999999999998876554
No 201
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.12 E-value=1.6e-10 Score=129.29 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-CCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-DKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||||||+|.++..+++.|+.+|+|||.|+ |++.|++.+..++ ...++++.+++.++..+ ++||+|+|.++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp---e~~DvivsE~~ 158 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWM 158 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC---ccccEEEeecc
Confidence 5779999999999999877788888999999996 8899999888764 35679999999988654 48999999655
Q ss_pred ccccChH-HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDE-DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~de-d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+..+ .+..++....++|||||.++-..
T Consensus 159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 159 GYGLLHESMLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp BTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred cccccccchhhhHHHHHHhhCCCCceECCcc
Confidence 4444332 37788899999999999987543
No 202
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.11 E-value=1.6e-10 Score=120.44 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC-CCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL-NIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~-~~~FDlVvs~ 210 (883)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. .++.+..+|+.+..+... +++||+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 567999999999999998887753 4799999999999999999876644 357888888876422110 2589999997
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
...+ +...+++.+.++|||||.+++.+..+.
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 7653 266899999999999999999875443
No 203
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.11 E-value=1.2e-09 Score=111.50 Aligned_cols=124 Identities=13% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+. .++++++|+.+++ ++||+|+++..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----~~~D~v~~~~p 121 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----SRVDIVIMNPP 121 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----CCCSEEEECCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----CCCCEEEEcCC
Confidence 45779999999999999988887766899999999999999999876544 5688999988753 37999999998
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccc
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
+++........+++++.+++ ||. ++..... ..+.......+.+.||++..
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~-~~~~~~~--------------~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVV-YSIHLAK--------------PEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEE-EEEEECC--------------HHHHHHHHHHHHHTTEEEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcE-EEEEeCC--------------cCCHHHHHHHHHHCCCeEEE
Confidence 88775433467888999988 554 4333100 01234556777888887653
No 204
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.11 E-value=1.8e-10 Score=125.25 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++.... .++||+
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-~~~fDv 160 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-SQTFDV 160 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC-CCCEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc-CCCccE
Confidence 356799999999999999887763 348999999999999999987653 2456789999988765432 468999
Q ss_pred EEEcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++.......+...+ ..+++.++++|||||++++..
T Consensus 161 Ii~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 999665443333222 679999999999999999976
No 205
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.11 E-value=2.2e-10 Score=118.77 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC------CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCC----C
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFK----P 197 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~------~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~----~ 197 (883)
.++.+|||||||+|.++..++.... .+|+++|+|+.+++.|+++..... ..++.+...|+.+.. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4678999999999999998887654 279999999999999999987654 456788999987743 2
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
. .++||+|++..+++++. .++.++|||||++++...
T Consensus 159 ~--~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 E--LGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp H--HCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred c--CCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 2 25899999999998773 567899999999999875
No 206
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.11 E-value=1.5e-10 Score=113.73 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC--------CCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK--------PEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~ 202 (883)
.++.+|||+|||+|.++..++.. +. .+++|+|+|+ +++. ..+++...|+.+.+ .. ++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~--~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVG--DS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHT--TC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCC--CC
Confidence 56789999999999999988877 44 4899999999 7532 34578888887753 22 25
Q ss_pred CccEEEEcccccccChHH---------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 203 KYDVIWIQWVLMFILDED---------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded---------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+|+++.++++..... ...+++++.++|+|||.+++..+.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999999888775421 168999999999999999998753
No 207
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.10 E-value=3.3e-10 Score=119.49 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhc--------cCCCccEEEccCCCCCC-CcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKD--------CDKLDKCYNVGIQDFKP-EDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~--------~~~~~~~~~~d~~~~~~-~~~~~ 202 (883)
+++.+|||||||+|.++..++..+.. .|+|+|+|+.+++.|++++... ...++.++++|+.+..+ ....+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 35679999999999999988888765 7999999999999999987654 44567899999887322 11136
Q ss_pred CccEEEEcccccccChH------HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDE------DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~de------d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|.|++...-.+.... ....++.++.++|+|||.|++.+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 89999854321111000 00479999999999999999965
No 208
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.10 E-value=5.7e-11 Score=125.44 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCc----CCCCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED----LNIKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~----~~~~FDl 206 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+.. ..++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999998877532 3799999999999999999887654 46789999987643210 0258999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...+++++.++|||||++++.+..+.+
T Consensus 140 V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDADK-----TNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESCG-----GGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9987642 33667999999999999999998876554
No 209
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.10 E-value=1.2e-10 Score=128.54 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-----------CCCccEEEccCCCCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-----------DKLDKCYNVGIQDFKPED 199 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-----------~~~~~~~~~d~~~~~~~~ 199 (883)
.++.+|||+|||+|.++..++.. +. .+|+|+|+++.+++.|++++.... ..++++..+|+.+.....
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 56789999999999999988876 55 489999999999999999887421 246788999988764221
Q ss_pred CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 200 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.+++||+|++... . +..++.++.++|||||.+++..+.
T Consensus 184 ~~~~fD~V~~~~~-----~--~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 184 KSLTFDAVALDML-----N--PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ----EEEEEECSS-----S--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCCeeEEEECCC-----C--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1357999998542 2 234889999999999999988765
No 210
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.10 E-value=2.9e-10 Score=129.43 Aligned_cols=110 Identities=16% Similarity=0.003 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHH-------HHHHhhcc--CCCccEEEccCCCCC--CCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQA-------KEEILKDC--DKLDKCYNVGIQDFK--PEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A-------~~~~~~~~--~~~~~~~~~d~~~~~--~~~~ 200 (883)
.++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.| ++++...+ ..+++++.+|..... ....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 56789999999999999988875 444799999999999999 77776554 356777776543211 1001
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++||+|+++.++ +. +++...|+++.++|||||.+++.+...
T Consensus 321 ~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 321 IPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp GGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 2589999998776 33 347788999999999999999987543
No 211
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.10 E-value=4.6e-10 Score=116.43 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +. .+|+|+|+|+.|++.+++++... .++.++.+|+.+... ...+++||+|+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence 356789999999999999988876 33 47999999999999999887654 567889999876321 11135899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+... .+ +....++.+++++|||||.+++..
T Consensus 149 ~~~~---~~-~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 149 EDVA---QP-TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECCC---ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC---CH-hHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8655 11 224456999999999999999983
No 212
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.10 E-value=2.3e-10 Score=122.79 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
.++.+|||+|||+|.++..++.. +. .+|+++|+|+.+++.|++++..... .++++...|+.+..+ +++||+|++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~V~~ 187 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---EKDVDALFL 187 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---CCSEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---CCccCEEEE
Confidence 56789999999999999988887 43 4899999999999999999876543 456888888877522 258999998
Q ss_pred cccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccccccc
Q psy8372 210 QWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281 (883)
Q Consensus 210 ~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~~ 281 (883)
. .++ +..++.++.++|+|||.+++.++.. .....+...++++||..+...
T Consensus 188 ~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~~---------------~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 188 D-----VPD--PWNYIDKCWEALKGGGRFATVCPTT---------------NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp C-----CSC--GGGTHHHHHHHEEEEEEEEEEESSH---------------HHHHHHHHHHHHSSEEEEEEE
T ss_pred C-----CcC--HHHHHHHHHHHcCCCCEEEEEeCCH---------------HHHHHHHHHHHHCCCceeEEE
Confidence 4 333 5578999999999999999988422 123456677778888766543
No 213
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.10 E-value=8.7e-10 Score=112.03 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.. .++++++|+.+++ ++||+|+++..
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----~~~D~v~~~~p 119 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----GKYDTWIMNPP 119 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----CCEEEEEECCC
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----CCeeEEEECCC
Confidence 3577999999999999998887766579999999999999999875 4588999988753 48999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++|..+.....+++++.+++ |+ +++..
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~--g~-~~~~~ 146 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS--MW-IYSIG 146 (200)
T ss_dssp C-------CHHHHHHHHHHE--EE-EEEEE
T ss_pred chhccCchhHHHHHHHHHhc--Cc-EEEEE
Confidence 99986533457888888888 44 44443
No 214
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.10 E-value=1.9e-10 Score=119.48 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF------DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDL 200 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~------~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~ 200 (883)
.++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++.... ..++.+...|..+..+.
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-- 160 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-- 160 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG--
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc--
Confidence 56789999999999999887764 32 379999999999999999877543 34668888888763222
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++||+|++..+++|++ +++.++|||||++++....
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 25899999999999885 4688999999999998743
No 215
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.09 E-value=6.9e-10 Score=134.24 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=98.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
+++...+.++..+ .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..++.. +++++++
T Consensus 525 ~d~r~~r~~l~~~-------~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~ 597 (703)
T 3v97_A 525 LDHRIARRMLGQM-------SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA 597 (703)
T ss_dssp GGGHHHHHHHHHH-------CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEES
T ss_pred ccHHHHHHHHHHh-------cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec
Confidence 4666777777776 357899999999999999888877778999999999999999999877544 6789999
Q ss_pred cCCCCCCCcCCCCccEEEEccc-----------ccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPEDLNIKYDVIWIQWV-----------LMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~~~~~~FDlVvs~~v-----------L~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.... .++||+|++... +.+. .+...++..+.++|+|||+|+++...
T Consensus 598 D~~~~l~~~-~~~fD~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 598 DCLAWLREA-NEQFDLIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CHHHHHHHC-CCCEEEEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CHHHHHHhc-CCCccEEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 987743221 368999999653 2233 45788999999999999999988753
No 216
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.09 E-value=4e-10 Score=116.70 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHhhcc-----CCCccEEEccCCCCCCCcCCCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HF-DKIDLLEQSSKFIEQAKEEILKDC-----DKLDKCYNVGIQDFKPEDLNIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~-~~V~gvD~S~~~le~A~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~FD 205 (883)
.++.+|||+|||+|..+..++.. +. .+|+++|+|+.+++.|+++..... ..++.+...|+...... .++||
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD 153 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--EAPYD 153 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--GCCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc--CCCcC
Confidence 56789999999999999988776 33 379999999999999999877542 34578888888754332 36899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+|++..+++++. .++.++|||||++++....
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 999999988774 4678999999999998753
No 217
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.07 E-value=2.8e-10 Score=116.72 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.+|+.+..+.. ++ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-RD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-CS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-CC-CCEEEEc
Confidence 467999999999999998876633 3799999999999999998876533 34688888887643222 35 9999987
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.. . .+...+++++.++|||||++++.+..+.
T Consensus 134 ~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 134 CD---V--FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TT---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred CC---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 43 2 2367899999999999999998775443
No 218
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.06 E-value=2.9e-10 Score=122.14 Aligned_cols=104 Identities=20% Similarity=0.133 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++..++..++.++.+|+.++ +. .++||+|++..
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~Vi~d~ 194 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRVIMGY 194 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEEEECC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEEEECC
Confidence 5678999999999999998888753 37999999999999999999877666678999999887 43 36899999987
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.. ....++.++.++|+|||.+++.+...
T Consensus 195 p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 54 24568999999999999999988543
No 219
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.06 E-value=3.3e-10 Score=118.78 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE------------ 198 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~------------ 198 (883)
++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...+.. .+.+..+|+.+..+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 567999999999999998888753 48999999999999999998765443 367888887553110
Q ss_pred -cC-C-CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 199 -DL-N-IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 199 -~~-~-~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.. + ++||+|++..... +...+++++.++|||||++++.+..+.
T Consensus 140 ~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 00 1 5899999986533 356789999999999999999875543
No 220
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.05 E-value=2.5e-10 Score=128.75 Aligned_cols=126 Identities=16% Similarity=0.110 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEc
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNV 190 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~ 190 (883)
.+....+.++.... .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++..++.. +++++++
T Consensus 197 ~~~~~~~~~~~~~~------~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~ 270 (385)
T 2b78_A 197 LDQRQVRNELINGS------AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM 270 (385)
T ss_dssp GGGHHHHHHHHHTT------TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES
T ss_pred CcHHHHHHHHHHHh------cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45566666666552 357799999999999999888777768999999999999999999877554 6789999
Q ss_pred cCCCCCCC--cCCCCccEEEEcccc-----cccCh--HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 191 GIQDFKPE--DLNIKYDVIWIQWVL-----MFILD--EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 191 d~~~~~~~--~~~~~FDlVvs~~vL-----~hl~d--ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
|+.++.+. ..+.+||+|++.... .+..+ +.+..++..+.++|+|||.+++....
T Consensus 271 D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 271 DVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98764321 012489999985433 12221 34667889999999999999998854
No 221
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.05 E-value=5.3e-10 Score=119.71 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHhhc-c--CCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-H-FDKIDLLEQSSKFIEQAKEEILKD-C--DKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g-~~~V~gvD~S~~~le~A~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++.... + ..++++...|+.+.... +++||+|
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~--~~~~D~v 175 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVDRA 175 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC--CCceeEE
Confidence 56789999999999999988875 3 347999999999999999998765 3 45678889998876433 3689999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++. +++ +..++.++.++|+|||++++..+.
T Consensus 176 ~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 176 VLD-----MLA--PWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEE-----SSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 983 333 457899999999999999998853
No 222
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.04 E-value=3.8e-10 Score=119.47 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCc-----CCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPED-----LNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~-----~~~~FD 205 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+.. ..++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 567999999999999998887643 3799999999999999999876544 45788888886642210 035899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+|++.... .+...+++.+.++|||||++++.+..+.
T Consensus 159 ~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 194 (247)
T 1sui_A 159 FIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_dssp EEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTGG
T ss_pred EEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCcC
Confidence 99987542 2367899999999999999998875544
No 223
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.04 E-value=8e-10 Score=123.03 Aligned_cols=109 Identities=17% Similarity=0.030 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+ . ..|+|+|+|+.|++.|++++...+...+++.+.|+.+++... +.||+|+++
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~--~~~D~Ii~n 279 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF--PEVDRILAN 279 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC--CCCSEEEEC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc--CCCCEEEEC
Confidence 567899999999999999888865 2 369999999999999999998776557799999999876544 469999997
Q ss_pred ccccccCh------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 211 WVLMFILD------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 211 ~vL~hl~d------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.....-.. +.+..+++++.++|||||.+++.++
T Consensus 280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 65432111 1247899999999999999999874
No 224
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.03 E-value=1.1e-09 Score=111.07 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC-----------
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----------- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~----------- 198 (883)
.++.+|||+|||+|.++..++.... .+|+|+|+|+.+ ....+.++++|+.+....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence 4678999999999999998887754 479999999831 123467888988775400
Q ss_pred ------------cCCCCccEEEEcccccccCh--HH-------HHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 ------------DLNIKYDVIWIQWVLMFILD--ED-------IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ------------~~~~~FDlVvs~~vL~hl~d--ed-------~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++||+|++..++++... .+ ...++++++++|||||.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 11358999999988776421 11 12488999999999999998763
No 225
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.03 E-value=4.1e-10 Score=123.01 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=83.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
..+|||||||+|.++..+++.... +|++||+++.|++.|++++......+++++.+|+.++.....+++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 349999999999999988885333 7999999999999999988654445678899998765322113689999996543
Q ss_pred cccChHH--HHHHHHHHHHHhccCcEEEEEec
Q psy8372 214 MFILDED--IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~ded--~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221111 15799999999999999998774
No 226
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.02 E-value=4.1e-10 Score=116.79 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcC----CCCcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDL----NIKYD 205 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~----~~~FD 205 (883)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...+. .+++++.+|+.+..+... .++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 356799999999999999887653 23799999999999999999876543 467888888755321100 15899
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
+|++.... .....+++++.++|+|||.+++.+..+.
T Consensus 148 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 148 VAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 99996542 2366899999999999999999876544
No 227
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.02 E-value=1.4e-09 Score=113.83 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++...... .++++...|+.+.... +++||+|++.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~- 165 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD- 165 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC-
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC-
Confidence 46789999999999999988887 45799999999999999999876543 5568888888775412 2589999983
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.++ +..+++++.++|+|||.+++..+
T Consensus 166 ----~~~--~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VRE--PWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----SSC--GGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----CcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 333 55789999999999999999885
No 228
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.01 E-value=1.1e-09 Score=124.04 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-C-CccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-K-LDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~-~~~~~~~d 191 (883)
++.....++..+ .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..++. . +++++++|
T Consensus 207 ~~~~~~~~l~~~-------~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D 279 (396)
T 3c0k_A 207 DQRDSRLATRRY-------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD 279 (396)
T ss_dssp GGHHHHHHHHHH-------CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred CHHHHHHHHHHh-------hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC
Confidence 344445556555 35789999999999999988887766899999999999999999887655 4 67899999
Q ss_pred CCCCCCCc--CCCCccEEEEcccc---------cccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 192 IQDFKPED--LNIKYDVIWIQWVL---------MFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 192 ~~~~~~~~--~~~~FDlVvs~~vL---------~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+.++.... .+.+||+|++.... .+. +....++.++.++|+|||.++++++.
T Consensus 280 ~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 280 VFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 87753310 02589999997532 222 34778999999999999999998854
No 229
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.00 E-value=1.9e-09 Score=120.98 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
++.+|||+| |+|.++..++..+. .+|+|+|+|+.|++.|++++...+..+++++.+|+.+..+...+++||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 99999998888776 4899999999999999999887655467899999988322212358999999887
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEE-EEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGII-IIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~l-vi~~ 242 (883)
+++. ....+++++.++|||||.+ ++..
T Consensus 251 ~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 6543 2578999999999999955 4444
No 230
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.00 E-value=3.2e-10 Score=122.34 Aligned_cols=107 Identities=23% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-----------cCCCccEEEccCCCCCCCcCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-----------CDKLDKCYNVGIQDFKPEDLN 201 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 201 (883)
+.+.+|||||||+|.++..++..+..+|+++|+++.+++.|++++ .. ...+++++.+|+.++... +
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c
Confidence 356799999999999999887774458999999999999999987 32 234578888887654221 3
Q ss_pred CCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 202 IKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++||+|++....+..+.+. ...++++++++|+|||.+++..
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5899999976543222122 2678999999999999999975
No 231
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.00 E-value=1.2e-09 Score=123.43 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
+++...+.++..+. .++.+|||+|||+|.++..++..|.. |+++|+|+.|++.|++++..++... .+.++|+
T Consensus 199 ~dqr~~r~~l~~~~------~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~ 270 (393)
T 4dmg_A 199 LDQRENRRLFEAMV------RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEA 270 (393)
T ss_dssp GGGHHHHHHHHTTC------CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCH
T ss_pred CCHHHHHHHHHHHh------cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccH
Confidence 45566666666552 35889999999999999988888776 9999999999999999988765442 5678887
Q ss_pred CCCCCCcCCCCccEEEEcccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.++.... .+.||+|++......-.. .+...++..+.++|||||.|++.++.
T Consensus 271 ~~~l~~~-~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 271 LPTLRGL-EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp HHHHHTC-CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHh-cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 7653221 235999999754311110 24678999999999999999987754
No 232
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.00 E-value=7.2e-10 Score=122.53 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++.....+++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 356799999999999999887653 348999999999999999987642 234678899998764221113589999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.....+.+.+. ...+++.++++|+|||.+++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9965422211111 3689999999999999999974
No 233
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.00 E-value=4.8e-10 Score=117.85 Aligned_cols=99 Identities=9% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh----CC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC---CCCcCCCCcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK----HF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLNIKYD 205 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~----g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~FD 205 (883)
++.+|||||||+|..+..++.. +. .+|+|+|+|+.|++.|+. ...+++++++|+.+. +... ..+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-----~~~~v~~~~gD~~~~~~l~~~~-~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR-EMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS-SSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-----cCCceEEEECcchhHHHHHhhc-cCCCC
Confidence 4579999999999999988776 33 379999999999998871 124678999998874 2211 23799
Q ss_pred EEEEcccccccChHHHHHHHHHHHH-HhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQ-ILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r-~LKPGG~lvi~~~ 243 (883)
+|++... |. ++..++.++++ +|||||++++.+.
T Consensus 155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998765 43 36789999997 9999999999874
No 234
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.99 E-value=1.1e-09 Score=115.12 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=88.8
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCC
Q psy8372 119 NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDF 195 (883)
Q Consensus 119 ~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~ 195 (883)
..++..+... .++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. .+++++.+|+.+.
T Consensus 59 ~~~l~~l~~~----~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 134 (237)
T 3c3y_A 59 GQLMSFVLKL----VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA 134 (237)
T ss_dssp HHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHh----hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 3455554322 3567999999999999998887633 3899999999999999999876644 3578888887654
Q ss_pred CCCc-----CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 196 KPED-----LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 196 ~~~~-----~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
.+.. ..++||+|++.... .+...+++.+.++|+|||++++.+..+.
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred HHHHHhccCCCCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 2210 02589999986432 3467899999999999999998775543
No 235
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.99 E-value=6.9e-10 Score=119.88 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-CCCceEE
Confidence 356799999999999999887654 348999999999999999987643 1356788888887643211 3689999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....++.+.+.+ ..+++.++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99655443333223 689999999999999999885
No 236
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.98 E-value=6.9e-10 Score=116.07 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCC--cCC--CCccE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPE--DLN--IKYDV 206 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~--~~~--~~FDl 206 (883)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.+|+.+..+. ..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999998877643 3799999999999999998876543 3467888886543111 001 58999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCC
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~ 247 (883)
|++.... .+...++.++.++|+|||++++.+..+.+
T Consensus 152 V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~g 187 (232)
T 3cbg_A 152 IFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWHG 187 (232)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGGG
T ss_pred EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcCC
Confidence 9987542 33678999999999999999998766543
No 237
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.98 E-value=8.7e-10 Score=124.72 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=87.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..++.. +++++++|+.++.+. ...++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 67899999999999999888877668999999999999999998876554 678999998765321 013589999996
Q ss_pred ccccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 211 WVLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
........ .....++.++.++|+|||.+++.++.
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 53322111 34778999999999999999998854
No 238
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.97 E-value=2.6e-09 Score=119.92 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++...+. ..+++.++|+.+++... ++||+|+++
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~--~~fD~Ii~n 293 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV--DSVDFAISN 293 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC--SCEEEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc--CCcCEEEEC
Confidence 56789999999999999988887763 699999999999999999887654 46789999999876543 689999997
Q ss_pred ccccccC------hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 211 WVLMFIL------DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 211 ~vL~hl~------ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
..+..-. .+-...+++.+.++| ||.+++... +...+...+.+.||+....
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------------------~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------------------EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES------------------CHHHHHHHHHHTTEEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC------------------CHHHHHHHHHHcCCEEEEE
Confidence 6643221 111367889999988 444444442 3556777888999987654
No 239
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.97 E-value=2.5e-09 Score=115.01 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..++. ..++++.+|+.++... +.||.|+++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~---~~~D~Vi~~~ 200 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---NIADRILMGY 200 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---SCEEEEEECC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc---cCCCEEEECC
Confidence 57899999999999999988888877899999999999999999987754 4578899999887643 5899999864
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
.. . ...++..+.++|||||.+.+.++..... ......+.+.......|+.+
T Consensus 201 p~--~----~~~~l~~a~~~lk~gG~ih~~~~~~e~~---------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 201 VV--R----THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp CS--S----GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCEE
T ss_pred CC--c----HHHHHHHHHHHcCCCCEEEEEeeecccc---------cchhHHHHHHHHHHHcCCcE
Confidence 31 1 2357788889999999998776543211 01112335556666666654
No 240
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.97 E-value=8.2e-10 Score=118.64 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--CCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.+++++...+..++.++..|+.++.... ..++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 46789999999999999988874 33479999999999999999988776667788999887654310 025899999
Q ss_pred Eccc------cccc---Ch-------HHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 209 IQWV------LMFI---LD-------EDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 209 s~~v------L~hl---~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+... +++- .. +....++.++.++|||||++++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8732 2210 00 124689999999999999999988543
No 241
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.96 E-value=6.4e-10 Score=121.97 Aligned_cols=109 Identities=22% Similarity=0.275 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
+.+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++... ...+++++.+|+.++... .+++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCCCccE
Confidence 356799999999999999887753 348999999999999999987541 145678899988764221 1368999
Q ss_pred EEEcccccc---cChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMF---ILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~h---l~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|++....++ -+.+. ...++++++++|||||.+++..
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999876554 21111 2689999999999999999975
No 242
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.95 E-value=3.5e-09 Score=121.87 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI- 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs- 209 (883)
.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+..++.++++|+.++.....+++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 5678999999999999998887532 4799999999999999999887766667889999887653221258999996
Q ss_pred -----cccccccChH-------H-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 210 -----QWVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 210 -----~~vL~hl~de-------d-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
..++++.++. + ...++.++.++|||||+++++++..
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3344444331 1 1578999999999999999988643
No 243
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.95 E-value=5.2e-10 Score=124.97 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCC------CChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC----cC
Q psy8372 133 PGKTRVLDVGAG------IGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----DL 200 (883)
Q Consensus 133 ~~~~rVLDVGCG------tG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~----~~ 200 (883)
.++.+||||||| +|..+..++... ..+|+|+|+|+.|. ....+++++++|+.+++.. ..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~ 285 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARR 285 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcc
Confidence 356799999999 777776676652 23799999999983 1234678999999886543 00
Q ss_pred CCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 201 NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 201 ~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++||+|+|.. .|++ .+...+|++++++|||||++++.+...
T Consensus 286 d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 286 YGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred cCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 26899999975 4666 458899999999999999999998764
No 244
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.95 E-value=2.5e-09 Score=115.56 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCc---cEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKY---DVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~F---DlVvs 209 (883)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+.. .++++++|+.+... ++| |+|++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~----~~f~~~D~Ivs 198 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK----EKFASIEMILS 198 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc----cccCCCCEEEE
Confidence 45699999999999999888872237999999999999999998876544 47899999876321 478 99999
Q ss_pred ccccc-----------ccChH------HHHHHHHHHH-HHhccCcEEEEEe
Q psy8372 210 QWVLM-----------FILDE------DIIKFLNLCK-QILNKNGIIIIKD 242 (883)
Q Consensus 210 ~~vL~-----------hl~de------d~~~~l~~~~-r~LKPGG~lvi~~ 242 (883)
+.... |-+.. +...+++++. +.|+|||.+++..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 73211 33221 1227899999 9999999999865
No 245
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.95 E-value=6.4e-10 Score=119.66 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++.. +..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-ENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-CSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCeeEE
Confidence 35679999999999999988766 3458999999999999999987531 2356788999987643221 3689999
Q ss_pred EEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....++.+... ...+++.++++|||||.+++..
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9966543222111 1479999999999999999975
No 246
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.94 E-value=1.2e-09 Score=119.21 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+.+.+|||||||+|.++..++... ..+|+++|+++.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-QDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-SSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-CCCceEE
Confidence 356799999999999999887764 348999999999999999987641 2456788888876542221 3689999
Q ss_pred EEcccccccChH--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDE--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~de--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++....+..+.. ....++++++++|+|||.+++..
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 996654322211 12578999999999999999976
No 247
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.92 E-value=1e-09 Score=120.76 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
+++.+|||||||+|.++..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++.... +++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-CCCceEE
Confidence 346799999999999999887653 348999999999999999987641 1356788999876542111 3589999
Q ss_pred EEcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++...-+.-+.+.. ..++++++++|||||.+++..
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98653221111222 689999999999999999976
No 248
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.91 E-value=1.3e-09 Score=118.53 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhh----ccCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+|||||||+|.++..++.. +..+|+++|+|+.+++.|++++.. ....+++++.+|+.++.... +++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-CCCceEEE
Confidence 4579999999999999988776 345899999999999999998753 12456788999876542211 36899999
Q ss_pred EcccccccCh-H--HHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILD-E--DIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~d-e--d~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+...-+++.. . ....++++++++|||||.+++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221211 1 12589999999999999999975
No 249
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.91 E-value=8.5e-10 Score=120.97 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
.+.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++... ...+++++.+|+.++... .+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCceEEE
Confidence 45799999999999999887653 348999999999999999987642 135678888887664221 136899999
Q ss_pred EcccccccChHHH--HHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDI--IKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~--~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+...-+..+.+.+ ..+++.++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9664322222222 689999999999999999876
No 250
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.90 E-value=3.8e-09 Score=117.11 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC------CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+.++...+. .+.+.++|.....+ .++||+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~---~~~fD~ 204 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL---VDPVDV 204 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC---CCCEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc---cCCccE
Confidence 3567999999999999987776542 4699999999999999998775544 45788888766432 358999
Q ss_pred EEEcccccccChHHH----------------HHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 207 IWIQWVLMFILDEDI----------------IKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 207 Vvs~~vL~hl~ded~----------------~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
|+++..+.+++.++. ..+++.+.+.|||||++++..+.. . +.. .....+++.+
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~--~---~~~------~~~~~ir~~l 273 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA--M---FGT------SDFAKVDKFI 273 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG--G---GGS------TTHHHHHHHH
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch--h---cCC------chHHHHHHHH
Confidence 999998877654322 268999999999999999988542 1 111 1235677777
Q ss_pred hhcccc
Q psy8372 271 SKANLK 276 (883)
Q Consensus 271 ~~aGf~ 276 (883)
.+.|+.
T Consensus 274 ~~~~~~ 279 (344)
T 2f8l_A 274 KKNGHI 279 (344)
T ss_dssp HHHEEE
T ss_pred HhCCeE
Confidence 777763
No 251
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.90 E-value=1e-09 Score=118.14 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-c-cCCCccEE--EccCCCCCCCcCCCCccEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-D-CDKLDKCY--NVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~--~~d~~~~~~~~~~~~FDlV 207 (883)
..++.+|||+|||+|.++..++.. .+|+|+|+|+ |+..|+++... . ...++.++ ++|+.+++ +++||+|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~fD~V 152 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----PFQADTV 152 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----CCCCSEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----CCCcCEE
Confidence 356789999999999999877766 4699999998 64433221110 0 01145788 88888764 2589999
Q ss_pred EEcccccccChH---HH--HHHHHHHHHHhccCc--EEEEEec
Q psy8372 208 WIQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKDN 243 (883)
Q Consensus 208 vs~~vL~hl~de---d~--~~~l~~~~r~LKPGG--~lvi~~~ 243 (883)
+|..+ ++.... .. ..++..+.++||||| .+++..+
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 99877 443221 11 137899999999999 9998764
No 252
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.89 E-value=1.3e-09 Score=114.76 Aligned_cols=135 Identities=8% Similarity=0.038 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++..+|||+|||+|-++..++...+. +|+++|+++.|++.+++++...+.. .++...|...-.+ +++||+|++.-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p---~~~~DvaL~lk 206 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRL---DEPADVTLLLK 206 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCC---CSCCSEEEETT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCC---CCCcchHHHHH
Confidence 44679999999999999877666444 8999999999999999998876544 4677777665443 35899999999
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCc-ccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDED-SSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~~~aGf~vv 278 (883)
++||+.++.....+ ++...|+|+|.++-.+.-. +.... +........|.+.+.+.|..+-
T Consensus 207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ks------l~Grs~gm~~~Y~~~~e~~~~~~g~~~~ 267 (281)
T 3lcv_B 207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKS------LGQRSKGMFQNYSQSFESQARERSCRIQ 267 (281)
T ss_dssp CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchh------hcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence 99999765555566 9999999999888776311 11111 1112234577788877887443
No 253
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.88 E-value=1.1e-09 Score=117.23 Aligned_cols=104 Identities=20% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh-c-cCCCccEE--EccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK-D-CDKLDKCY--NVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~-~-~~~~~~~~--~~d~~~~~~~~~~~~FDlVv 208 (883)
.++.+|||+|||+|.++..++.. .+|+|+|+|+ |+..+++.... . ...++.++ ++|+.+++ +++||+|+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~fD~V~ 145 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP----VERTDVIM 145 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC----CCCCSEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC----CCCCcEEE
Confidence 56789999999999999877666 5699999998 54333221100 0 01145778 88888764 25899999
Q ss_pred EcccccccChH---HH--HHHHHHHHHHhccCc--EEEEEecc
Q psy8372 209 IQWVLMFILDE---DI--IKFLNLCKQILNKNG--IIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~de---d~--~~~l~~~~r~LKPGG--~lvi~~~~ 244 (883)
|..+ ++.... .. ..++..+.++||||| .+++..+.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9877 544321 11 137899999999999 99987743
No 254
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.88 E-value=6.5e-09 Score=108.38 Aligned_cols=103 Identities=14% Similarity=-0.005 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++ +...|+|+|+++.|++.+++++...+ ....+...|...-++. ++||+|++.-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~---~~~DvvLllk~ 177 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPA---EAGDLALIFKL 177 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCC---CBCSEEEEESC
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCC---CCcchHHHHHH
Confidence 457799999999999998666 44489999999999999999976544 3447788887765544 48999999999
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+.+.+....+ ++...|+++|.++-..
T Consensus 178 lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 178 LPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9999665445555 8888999997776655
No 255
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.87 E-value=2.4e-09 Score=120.52 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--CCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--LNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..++..+++++++|+.++.+.. .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 5679999999999999988877 5579999999999999999988776555789999987754310 035899999965
Q ss_pred cccccCh-------HHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 212 VLMFILD-------EDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 212 vL~hl~d-------ed~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
....... +....++..+.++|+|||.+++.++.
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3221110 34678999999999999999998854
No 256
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.87 E-value=5.3e-09 Score=105.38 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-C---------CeEEEEeCCHHHHHHHHHHHhhccCCCccEE-EccCCCCCCC---
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-F---------DKIDLLEQSSKFIEQAKEEILKDCDKLDKCY-NVGIQDFKPE--- 198 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-~---------~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~-~~d~~~~~~~--- 198 (883)
.++.+|||+|||+|.++..++... . .+|+|+|+|+.+ ....+.++ .+|+.+....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence 567899999999999999888873 2 579999999842 12345677 7776553210
Q ss_pred ---cCCCCccEEEEcccccc----cChHH-----HHHHHHHHHHHhccCcEEEEEec
Q psy8372 199 ---DLNIKYDVIWIQWVLMF----ILDED-----IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 199 ---~~~~~FDlVvs~~vL~h----l~ded-----~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
..+++||+|+|..+++. ..+.. ...+++++.++|||||.+++.++
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 01248999999665443 22210 14789999999999999999874
No 257
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.87 E-value=5.9e-09 Score=112.70 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccC
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGI 192 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~ 192 (883)
+......++..+. ..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... .+++++++|+
T Consensus 13 d~~i~~~i~~~~~-----~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~ 86 (285)
T 1zq9_A 13 NPLIINSIIDKAA-----LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86 (285)
T ss_dssp CHHHHHHHHHHTC-----CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred CHHHHHHHHHhcC-----CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence 4455555555542 24678999999999999998888865 699999999999999998764432 4568899999
Q ss_pred CCCCCCcCCCCccEEEEcccccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
.+.+. .+||+|+++...+.
T Consensus 87 ~~~~~----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 87 LKTDL----PFFDTCVANLPYQI 105 (285)
T ss_dssp TTSCC----CCCSEEEEECCGGG
T ss_pred ecccc----hhhcEEEEecCccc
Confidence 87643 26999999765443
No 258
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.86 E-value=9.1e-09 Score=119.04 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ- 210 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~- 210 (883)
++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+..++.+++.|+.++... .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-VPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-STTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-ccccCCEEEECC
Confidence 678999999999999998887632 37999999999999999998877666678888988775431 13589999983
Q ss_pred -----ccccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 -----WVLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 -----~vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++.+-++ + ....+|.++.++|||||+|+++++..
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22332221 1 13578999999999999999988654
No 259
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.86 E-value=2.5e-09 Score=114.31 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEccCCCCCCCcCCCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNVGIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~FDlVv 208 (883)
+.+.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++... ...+++++.+|..++. ++||+|+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~fD~Ii 144 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KKYDLIF 144 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hhCCEEE
Confidence 345799999999999999888775 78999999999999999876431 2345678888887754 4899999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. .+ +..+++.++++|||||.+++..
T Consensus 145 ~d~-----~d--p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EP--DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CC--CHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CC--hHHHHHHHHHhcCCCcEEEEEc
Confidence 863 23 3459999999999999999864
No 260
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.85 E-value=9.5e-09 Score=104.40 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc-----CC----CC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-----LN----IK 203 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~----~~ 203 (883)
.++.+|||+|||+|.++..++.. ...|+|+|+++.. ....+.++++|+.+..... .. ++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 56889999999999999977776 4479999999742 2245689999988753210 01 38
Q ss_pred ccEEEEccccccc----Ch-----HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFI----LD-----EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl----~d-----ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
||+|+|....... .+ +....++..+.++|||||.|++..+
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999997543211 11 1245788999999999999998874
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.85 E-value=3.2e-08 Score=112.86 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++..++.. ++++++|+.++.+ .+||+|++...
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~----~~fD~Vv~dPP 362 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV----KGFDTVIVDPP 362 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----TTCSEEEECCC
T ss_pred CCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----cCCCEEEEcCC
Confidence 467899999999999999877764 47999999999999999998876555 7899999988643 27999999765
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-..+. ..+++.+. .|+|||.++++.
T Consensus 363 r~g~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 363 RAGLH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCSC----HHHHHHHH-HHCCSEEEEEES
T ss_pred ccchH----HHHHHHHH-hcCCCcEEEEEC
Confidence 43332 13455554 599999999986
No 262
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.83 E-value=3.8e-09 Score=121.11 Aligned_cols=135 Identities=16% Similarity=0.054 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++... ...|+++|+|+.+++.+++++...+..++.++..|+.++... .+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~-~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH-FSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH-HTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh-ccccCCEEEEC
Confidence 568899999999999999888762 237999999999999999999887766778888887765421 13689999984
Q ss_pred c------cccccCh--------------HHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhh
Q psy8372 211 W------VLMFILD--------------EDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLF 270 (883)
Q Consensus 211 ~------vL~hl~d--------------ed~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 270 (883)
. ++.+-++ .....++..+.++|||||+|+.++++.... .+......++
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e------------Ene~vv~~~l 250 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE------------ENEEIISWLV 250 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG------------GTHHHHHHHH
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc------------cCHHHHHHHH
Confidence 3 2222111 112378999999999999999988643211 1234566777
Q ss_pred hhcccccccc
Q psy8372 271 SKANLKCVKS 280 (883)
Q Consensus 271 ~~aGf~vv~~ 280 (883)
++.+|+++..
T Consensus 251 ~~~~~~l~~~ 260 (456)
T 3m4x_A 251 ENYPVTIEEI 260 (456)
T ss_dssp HHSSEEEECC
T ss_pred HhCCCEEEec
Confidence 7777776654
No 263
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.82 E-value=3.7e-09 Score=121.42 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...+.. +.++++|+.++... .+++||+|++.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~-~~~~FD~Il~D 177 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA-FGTYFHRVLLD 177 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH-HCSCEEEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh-ccccCCEEEEC
Confidence 5688999999999999998887643 37999999999999999999877666 78888887765421 13689999963
Q ss_pred c------cccccCh-------H-------HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 W------VLMFILD-------E-------DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 ~------vL~hl~d-------e-------d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. ++.+-++ + ....++..+.++|||||+|+.++++.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 2 2222221 1 12679999999999999999988643
No 264
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.82 E-value=1.1e-08 Score=113.18 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++.+|||+|||+|.++.. +. +..+|+|+|+|+.+++.|++++..++. .+++++++|+.++. ++||+|++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~dp 266 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIMNL 266 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEECC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEECC
Confidence 4678999999999999987 55 566899999999999999999887754 46789999998765 4899999964
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.- . ...++..+.++|+|||.+++.++..
T Consensus 267 P~--~----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 267 PK--F----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp TT--T----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred cH--h----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 31 1 2268899999999999999987543
No 265
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.82 E-value=1.3e-08 Score=110.73 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......++..+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.......+++
T Consensus 20 ~Gq~fl~~~~i~~~i~~~~~-----~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~ 93 (299)
T 2h1r_A 20 QGQHLLKNPGILDKIIYAAK-----IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLE 93 (299)
T ss_dssp ---CEECCHHHHHHHHHHHC-----CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred cccceecCHHHHHHHHHhcC-----CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence 33333335555556665552 2467899999999999999877764 46999999999999999988655445678
Q ss_pred EEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
++.+|+.+++. .+||+|+++...+
T Consensus 94 ~~~~D~~~~~~----~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 94 VYEGDAIKTVF----PKFDVCTANIPYK 117 (299)
T ss_dssp C----CCSSCC----CCCSEEEEECCGG
T ss_pred EEECchhhCCc----ccCCEEEEcCCcc
Confidence 89999887643 3799999976544
No 266
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.80 E-value=1.4e-08 Score=116.07 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc-
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ- 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~- 210 (883)
.++.+|||+|||+|..+..++..+. ..|+++|+|+.+++.+++++...+.. +.+++.|+.++.....+++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhcccCCCCEEEEeC
Confidence 5678999999999999998888765 38999999999999999998766543 57888888776421112589999963
Q ss_pred -----ccccccChH-------H-------HHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 211 -----WVLMFILDE-------D-------IIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 211 -----~vL~hl~de-------d-------~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.++++.++. + ...++.++.++|||||++++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 344444331 1 1588999999999999999998543
No 267
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.79 E-value=6.2e-08 Score=110.85 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~ 194 (883)
......++..+.... ...++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++..++..+++++++|+.+
T Consensus 268 ~~~~e~l~~~~~~~l-~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 268 AGVNQKMVARALEWL-DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhh-cCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 334444544443222 2245679999999999999977766 45799999999999999999987766678999999987
Q ss_pred CCCC--cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhh
Q psy8372 195 FKPE--DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSK 272 (883)
Q Consensus 195 ~~~~--~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~ 272 (883)
.... ...++||+|+++..-... ..+++.+. .++|++.++++.... +...-...+.+
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyvsc~p~----------------tlard~~~l~~ 403 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYVSCNPA----------------TLARDSEALLK 403 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEEESCHH----------------HHHHHHHHHHH
T ss_pred HhhhhhhhcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEEECChH----------------HHHhhHHHHHH
Confidence 4322 113589999997543322 13444444 378999888876211 12222355667
Q ss_pred cccccccccCCCCCc
Q psy8372 273 ANLKCVKSEKGEFSP 287 (883)
Q Consensus 273 aGf~vv~~~~~~~~P 287 (883)
.|+++.....-..+|
T Consensus 404 ~Gy~~~~~~~~d~Fp 418 (433)
T 1uwv_A 404 AGYTIARLAMLDMFP 418 (433)
T ss_dssp TTCEEEEEEEECCST
T ss_pred CCcEEEEEEEeccCC
Confidence 799888766666665
No 268
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.77 E-value=4.7e-09 Score=114.57 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeC----CHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ----SSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~----S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlV 207 (883)
.++.+|||+|||+|.++..++.. .+|+|+|+ ++.+++.+. ........+.+++. |+.+++ .++||+|
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~----~~~fD~V 152 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP----PERCDTL 152 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC----CCCCSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC----cCCCCEE
Confidence 56789999999999999877766 46999999 565442211 01111234677777 777653 2489999
Q ss_pred EEccccc---ccChHH-HHHHHHHHHHHhccCcEEEEEec
Q psy8372 208 WIQWVLM---FILDED-IIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 208 vs~~vL~---hl~ded-~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|..+++ +..+.. ...+|..+.++|||||.|++..+
T Consensus 153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9987653 222211 12578999999999999998664
No 269
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.75 E-value=6.5e-08 Score=105.68 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceec--------cCCCCceeeEe--cCHHHHHHHHHccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVP--------THEPNKFYSLV--QSPQQLKQLLMVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~--------~~~~~~~~~L~--~Spql~kq~l~~~~~~-- 417 (883)
-+.+.+.+|++| ...||.|+.+|.+...... .+-.++.+ .+..+....|+ +||.+..- |..+-.
T Consensus 109 ~~~~~~~Ir~if-~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~--l~~~~~pi 185 (327)
T 3pco_A 109 VTRTIDRIESFF-GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRT--MKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHH-HTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHH--HTTCCSSC
T ss_pred HHHHHHHHHHHH-HHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHH--HHhCCCCe
Confidence 456778899999 5899999999998542111 01001110 00001222354 67765433 333333
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCY 464 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~ 464 (883)
|+|++|+|||.+ .+.+|.|+|+|+|..+.. .++.++..++|.+++.
T Consensus 186 rifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~ 233 (327)
T 3pco_A 186 RIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRN 233 (327)
T ss_dssp CBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 899999999998 678888999999876653 2345555444444443
No 270
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.70 E-value=7.4e-08 Score=104.16 Aligned_cols=117 Identities=16% Similarity=0.020 Sum_probs=82.2
Q ss_pred CCCCCeEEEEcCCC------ChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccE-EEccCCCCCCCcCCC
Q psy8372 132 DPGKTRVLDVGAGI------GRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVGIQDFKPEDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt------G~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~ 202 (883)
..++.+|||+|||+ |. ..++.... .+|+|+|+|+. + ..+++ +++|+.+.... +
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~---~ 122 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA---N 122 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS---S
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc---C
Confidence 46788999999954 65 32444332 37999999987 1 24688 99999876543 5
Q ss_pred CccEEEEcccccc--------cC-hHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhc
Q psy8372 203 KYDVIWIQWVLMF--------IL-DEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKA 273 (883)
Q Consensus 203 ~FDlVvs~~vL~h--------l~-ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~a 273 (883)
+||+|+++...+. .. .+....++++++++|||||.|++..+... ...++..++++.
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~---------------~~~~l~~~l~~~ 187 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS---------------WNADLYKLMGHF 187 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS---------------CCHHHHHHHTTE
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC---------------CHHHHHHHHHHc
Confidence 8999999754321 10 12256899999999999999999874221 234778888999
Q ss_pred cccccccc
Q psy8372 274 NLKCVKSE 281 (883)
Q Consensus 274 Gf~vv~~~ 281 (883)
||..+...
T Consensus 188 GF~~v~~~ 195 (290)
T 2xyq_A 188 SWWTAFVT 195 (290)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 98765443
No 271
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.68 E-value=5e-08 Score=102.95 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|+++... ..+++++++|+.+++... ...| .|+++..
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-~~~~-~vv~nlP 103 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-NQSY-KIFGNIP 103 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-SCCC-EEEEECC
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-CCCe-EEEEeCC
Confidence 467899999999999999888887 5699999999999999998763 246789999998876542 1345 4555543
No 272
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.66 E-value=2.5e-08 Score=111.66 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-------------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN------------- 201 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------- 201 (883)
+.+|||+|||+|.++..++. +..+|+|+|+|+.+++.|++++..++..+++++.+|+.++.+....
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 57899999999999986655 5567999999999999999999877666788999988765321000
Q ss_pred -CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 202 -IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 202 -~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.+||+|++...-. .+..++.++|+++|.++....... .. ..++..+. .|+++...
T Consensus 293 ~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc~p~-----------t~---ard~~~l~--~~y~~~~~ 348 (369)
T 3bt7_A 293 SYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISCNPE-----------TL---CKNLETLS--QTHKVERL 348 (369)
T ss_dssp GCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEESCHH-----------HH---HHHHHHHH--HHEEEEEE
T ss_pred cCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEECCHH-----------HH---HHHHHHHh--hCcEEEEE
Confidence 2799999864322 233456777889998888764321 11 12333333 26877766
Q ss_pred cCCCCCc
Q psy8372 281 EKGEFSP 287 (883)
Q Consensus 281 ~~~~~~P 287 (883)
..-..||
T Consensus 349 ~~~D~FP 355 (369)
T 3bt7_A 349 ALFDQFP 355 (369)
T ss_dssp EEECCST
T ss_pred EeeccCC
Confidence 6666665
No 273
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.63 E-value=6.2e-08 Score=111.22 Aligned_cols=108 Identities=12% Similarity=0.014 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC--------------CCeEEEEeCCHHHHHHHHHHHhhccCC--CccEEEccCCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH--------------FDKIDLLEQSSKFIEQAKEEILKDCDK--LDKCYNVGIQDFK 196 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g--------------~~~V~gvD~S~~~le~A~~~~~~~~~~--~~~~~~~d~~~~~ 196 (883)
.++.+|||.|||+|.++..++... ...++|+|+++.+++.|+.++...+.. ...+.++|.....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999988776531 236999999999999999987755443 4578889887654
Q ss_pred CCcCCCCccEEEEcccccccChH---------------HHHHHHHHHHHHhccCcEEEEEec
Q psy8372 197 PEDLNIKYDVIWIQWVLMFILDE---------------DIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 197 ~~~~~~~FDlVvs~~vL~hl~de---------------d~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.. ++||+|+++..+.+.... ....+++.+.+.|||||++++..+
T Consensus 250 ~~---~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 PS---TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CS---SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc---CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 43 389999999877654321 124789999999999999998875
No 274
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.61 E-value=7.4e-08 Score=109.19 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|.++..++.. ...+++|+|+++.+++.| ..+.++++|+.++.+. ++||+|+++.
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~---~~fD~Ii~NP 106 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG---EAFDLILGNP 106 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS---SCEEEEEECC
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCcc---CCCCEEEECc
Confidence 4569999999999999888765 234799999999998877 2457889998876532 5899999974
Q ss_pred cccc----------cChHH-----------------HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccch
Q psy8372 212 VLMF----------ILDED-----------------IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLP 264 (883)
Q Consensus 212 vL~h----------l~ded-----------------~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~ 264 (883)
.... +.++. ...+++.+.++|+|||.+++..+..- + ......
T Consensus 107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~-----l------~~~~~~ 175 (421)
T 2ih2_A 107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW-----L------VLEDFA 175 (421)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG-----G------TCGGGH
T ss_pred CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHH-----h------cCccHH
Confidence 3321 22211 12679999999999999999885320 0 011244
Q ss_pred hhhhhhhhccc
Q psy8372 265 QFCLLFSKANL 275 (883)
Q Consensus 265 ~~~~l~~~aGf 275 (883)
.+++.+.+.|+
T Consensus 176 ~lr~~l~~~~~ 186 (421)
T 2ih2_A 176 LLREFLAREGK 186 (421)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHhcCC
Confidence 67777777776
No 275
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.58 E-value=4.7e-09 Score=110.69 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++.. ...+++++++|+
T Consensus 13 ~~~~~~~~i~~~~~-----~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~ 84 (245)
T 1yub_A 13 TSEKVLNQIIKQLN-----LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDI 84 (245)
T ss_dssp CCTTTHHHHHHHCC-----CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCC
T ss_pred CCHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECCh
Confidence 34444555555542 2467799999999999999888887 569999999999999987765 234568888998
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHHHH----------HHH----HHHHHHhccCcEEEEEe
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDII----------KFL----NLCKQILNKNGIIIIKD 242 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded~~----------~~l----~~~~r~LKPGG~lvi~~ 242 (883)
.+++... +++| .|+++... +....... ..+ +.+.++|+|||.+.+..
T Consensus 85 ~~~~~~~-~~~f-~vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 85 LQFQFPN-KQRY-KIVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TTTTCCC-SSEE-EEEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred hhcCccc-CCCc-EEEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8876432 2578 66665322 11111111 233 66889999999877765
No 276
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.56 E-value=6.8e-08 Score=104.76 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-CCccceecc--CCC------CceeeEecC--HHHHHHHHHccC---
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-GAREFVVPT--HEP------NKFYSLVQS--PQQLKQLLMVGS--- 415 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-ga~~f~v~~--~~~------~~~~~L~~S--pql~kq~l~~~~--- 415 (883)
-.+++.+.+|++| ...||.||++|.+.....+ .+..+.... +.. .....|++| |.+ ++ +++.+
T Consensus 54 ~~~~~~~~iR~~l-~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~l-l~-~l~~N~~~ 130 (294)
T 2rhq_A 54 PLTRTVEEIEDLF-LGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQ-AR-TMEKRNGQ 130 (294)
T ss_dssp HHHHHHHHHHHHH-HTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHH-HH-HHHHTTTC
T ss_pred HHHHHHHHHHHHH-HHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHH-HH-HHHhcCCC
Confidence 4567899999999 5899999999998542100 011111100 000 122356544 544 44 34555
Q ss_pred -CCcEEEEeeceecCCCCCCCCcceecccccccC--CCHHHHHHHHHHHHHHHh
Q psy8372 416 -VDRYFQIARCYRDESTRPDRQPEFTQLDIELSF--TTRDDVMRLIEELLCYCL 466 (883)
Q Consensus 416 -~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~--~~~~dvm~~~E~li~~i~ 466 (883)
--|+||||+|||+++.+..|.|||+||++.+++ .|+.+++..+|.++..++
T Consensus 131 ~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp SCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 459999999999987666677999999999999 679999999999998774
No 277
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.56 E-value=3e-07 Score=103.55 Aligned_cols=108 Identities=14% Similarity=0.011 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++.+|||+|||+|.++..++..+. ..|+|+|+++.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999988876532 2599999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccC-hHHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FIL-DEDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~-ded~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+++.+.|+.++.+. ++||+|+++.... .+. .+++..+.+.+.+.||+ ||.+++.+.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~---~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSE---DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCS---CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChhhcCcC---CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 9998876543 578999999987653 4899999987653 222 24567788888888887 888888773
No 278
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.56 E-value=2.8e-07 Score=99.96 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC
Q psy8372 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192 (883)
Q Consensus 113 ~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~ 192 (883)
.+......+++.+. ..++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++. ...+++++++|+
T Consensus 34 ~d~~i~~~Iv~~l~-----~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~ 105 (295)
T 3gru_A 34 IDKNFVNKAVESAN-----LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDA 105 (295)
T ss_dssp CCHHHHHHHHHHTT-----CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCT
T ss_pred CCHHHHHHHHHhcC-----CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhc--cCCCeEEEECch
Confidence 34555555655552 2467899999999999999888874 469999999999999999886 234678999999
Q ss_pred CCCCCCcCCCCccEEEEccccc
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
.++.... .+||+|+++...+
T Consensus 106 l~~~~~~--~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 106 LKVDLNK--LDFNKVVANLPYQ 125 (295)
T ss_dssp TTSCGGG--SCCSEEEEECCGG
T ss_pred hhCCccc--CCccEEEEeCccc
Confidence 9876544 4799999885543
No 279
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.55 E-value=3.5e-07 Score=103.19 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++.+|||.+||+|.++..++..+. .+|+|+|+|+.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 4677999999999999887776533 2499999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccCh-HHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FILD-EDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~d-ed~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+.+.+.|+.++... ++||+|+++.... .+.+ +++..+.+.+.+.||+ ||.+++.+.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~~---~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQTE---DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCCC---CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHcCCCCceEEEECChHhCCCC---CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999877543 578999999987653 4899999986542 2221 3466677778888876 998888773
No 280
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.54 E-value=3.6e-07 Score=104.87 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=28.1
Q ss_pred cEEEEeeceecCCCCCCCCcceeccccccc
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELS 447 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~ 447 (883)
|+|+||+|||+|..+.+|+|||+|+|..++
T Consensus 349 riFeiGrVFR~d~~DatHlpeFhQlegl~~ 378 (508)
T 3l4g_A 349 KYFSIDRVFRNETLDATHLAEFHQIEGVVA 378 (508)
T ss_dssp EEEEEEEEECCSCCCSSSCSEEEEEEEEEE
T ss_pred eEEEEccEEecCCCCCCcCCeEEEEEEEEE
Confidence 899999999999999999999999998765
No 281
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.51 E-value=8.5e-08 Score=106.06 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-----C---CCccEEEccCCCCCCCc--CCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----D---KLDKCYNVGIQDFKPED--LNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-----~---~~~~~~~~d~~~~~~~~--~~~ 202 (883)
+.+.+||+||||+|.++..+++.+..+|++||+++.+++.|++++.... . .+++++.+|+.++.... .++
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 4678999999999999998888776789999999999999999876321 1 15688889987765320 136
Q ss_pred CccEEEEcccc-cc--cChH-HHHHHHHHH----HHHhccCcEEEEEec
Q psy8372 203 KYDVIWIQWVL-MF--ILDE-DIIKFLNLC----KQILNKNGIIIIKDN 243 (883)
Q Consensus 203 ~FDlVvs~~vL-~h--l~de-d~~~~l~~~----~r~LKPGG~lvi~~~ 243 (883)
+||+|++...- .. .+.. .-..+++.+ .++|+|||.+++...
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~ 315 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 315 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcC
Confidence 89999996532 11 1100 013455555 999999999998864
No 282
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.51 E-value=7e-07 Score=100.38 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF---------------------------------------DKIDLLEQSSKFIEQA 173 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~---------------------------------------~~V~gvD~S~~~le~A 173 (883)
.++..|||.+||+|.++..++..+. ..|+|+|+|+.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999987775433 2499999999999999
Q ss_pred HHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEccccc-ccC-hHHHHHHHHHHHHHhcc--CcEEEEEec
Q psy8372 174 KEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM-FIL-DEDIIKFLNLCKQILNK--NGIIIIKDN 243 (883)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~-hl~-ded~~~~l~~~~r~LKP--GG~lvi~~~ 243 (883)
++++...+.. .+++.+.|+.++... ++||+|+++.-.. .+. .+++..+.+.+.+.||+ ||.+++.+.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~~---~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKTN---KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCCC---CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChHHCCcc---CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9999877543 478999999987653 4899999986543 222 24577788888888887 999888873
No 283
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.47 E-value=3.5e-07 Score=97.15 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+.. .++.+|||||||+|.++..++..+ .+|+|+|+++.|++.++++... ..+++
T Consensus 7 ~GQnFL~d~~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~ 78 (255)
T 3tqs_A 7 FGQHFLHDSFVLQKIVSAIHP-----QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNIT 78 (255)
T ss_dssp --CCEECCHHHHHHHHHHHCC-----CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEE
T ss_pred CCcccccCHHHHHHHHHhcCC-----CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcE
Confidence 333334456666666666632 467899999999999999888776 5799999999999999998864 34678
Q ss_pred EEEccCCCCCCCcC--CCCccEEEEcc
Q psy8372 187 CYNVGIQDFKPEDL--NIKYDVIWIQW 211 (883)
Q Consensus 187 ~~~~d~~~~~~~~~--~~~FDlVvs~~ 211 (883)
++++|+.+++.... +++|| |+++.
T Consensus 79 ~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 79 IYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp EEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred EEEcchHhCCHHHhccCCCeE-EEecC
Confidence 99999998765332 24688 66654
No 284
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.46 E-value=3.1e-07 Score=103.04 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc---------------cCCCccEEEccCCCCCC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD---------------CDKLDKCYNVGIQDFKP 197 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~---------------~~~~~~~~~~d~~~~~~ 197 (883)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++..+ +...++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4679999999999999988887 4447999999999999999998876 44446888888866532
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.. .+.||+|++.. . .. ...++..+.+.|||||.++++.
T Consensus 127 ~~-~~~fD~I~lDP-~-~~----~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ER-HRYFHFIDLDP-F-GS----PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HS-TTCEEEEEECC-S-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc-cCCCCEEEeCC-C-CC----HHHHHHHHHHhcCCCCEEEEEe
Confidence 11 24799999754 2 11 2468899999999999888765
No 285
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.43 E-value=1.1e-06 Score=94.17 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+.. .++ +|||||||+|.++..++..+. +|+|+|+++.|++.++++... .+++
T Consensus 25 ~GQnfL~d~~i~~~Iv~~~~~-----~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---~~v~ 94 (271)
T 3fut_A 25 FGQNFLVSEAHLRRIVEAARP-----FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---LPVR 94 (271)
T ss_dssp SSCCEECCHHHHHHHHHHHCC-----CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred CCccccCCHHHHHHHHHhcCC-----CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence 444444566677777777632 456 999999999999998888874 599999999999999998762 4678
Q ss_pred EEEccCCCCCCCcCCCCccEEEEcccccccCh
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD 218 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d 218 (883)
++++|+.+++.... ..+|.|+++.. .++..
T Consensus 95 vi~~D~l~~~~~~~-~~~~~iv~NlP-y~iss 124 (271)
T 3fut_A 95 LVFQDALLYPWEEV-PQGSLLVANLP-YHIAT 124 (271)
T ss_dssp EEESCGGGSCGGGS-CTTEEEEEEEC-SSCCH
T ss_pred EEECChhhCChhhc-cCccEEEecCc-ccccH
Confidence 99999988765431 26888888765 34443
No 286
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.43 E-value=2.1e-07 Score=104.75 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCC--ccEEEccCCCCCC-CcCCCCccEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKL--DKCYNVGIQDFKP-EDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~--~~~~~~d~~~~~~-~~~~~~FDlVv 208 (883)
++.+|||++||+|.++..++.. |..+|+++|+++.+++.+++++..++... ++++.+|+.++.. .. .+.||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-GFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-SSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-CCCCcEEE
Confidence 5679999999999999988885 34589999999999999999998776543 7888888866432 21 35799999
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+.. ... +..++..+.+.|+|||.++++.
T Consensus 131 lDP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 987 222 2358889999999999888876
No 287
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.42 E-value=8.9e-07 Score=96.67 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC-CCCccEEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL-NIKYDVIWI 209 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~FDlVvs 209 (883)
.++.+|||+|||+|..+..++.. +...|+++|+++.+++.+++++...+..++.++..|+.++..... .++||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 56889999999999999988875 234799999999999999999987766678899999887654321 147999997
Q ss_pred cc------cccccCh---------HH-------HHHHHHHHHHHhccCcEEEEEecc
Q psy8372 210 QW------VLMFILD---------ED-------IIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 210 ~~------vL~hl~d---------ed-------~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
.. ++..-++ ++ ...+|..+.++|+ ||+|+.++..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 32 2222111 01 2356777888786 9999888754
No 288
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.36 E-value=2.4e-06 Score=95.47 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH--------h----C---CC-eEEEEeCCHHHHHHHHHHHhhccC------------CCc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLA--------K----H---FD-KIDLLEQSSKFIEQAKEEILKDCD------------KLD 185 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~--------~----g---~~-~V~gvD~S~~~le~A~~~~~~~~~------------~~~ 185 (883)
...+|+|+|||+|.++..++. . + +. +|...|+....-...=+.+..... ...
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 468999999999999986632 1 1 23 688888776664443333332100 011
Q ss_pred cEEEccCCCCC-CCcCCCCccEEEEcccccccCh------------------------------------HHHHHHHHHH
Q psy8372 186 KCYNVGIQDFK-PEDLNIKYDVIWIQWVLMFILD------------------------------------EDIIKFLNLC 228 (883)
Q Consensus 186 ~~~~~d~~~~~-~~~~~~~FDlVvs~~vL~hl~d------------------------------------ed~~~~l~~~ 228 (883)
-|..+....+- ...++++||+|+|+.+|||+++ +|...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333321 1122479999999999999862 1466789999
Q ss_pred HHHhccCcEEEEEecccC
Q psy8372 229 KQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 229 ~r~LKPGG~lvi~~~~~~ 246 (883)
++.|+|||+++++.....
T Consensus 212 a~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHEEEEEEEEEEEEECC
T ss_pred HHHhCCCCEEEEEEecCC
Confidence 999999999999886543
No 289
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.35 E-value=2.4e-07 Score=98.56 Aligned_cols=82 Identities=18% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCH-------HHHHHHHHHHhhccC-CCccEEEccCCCCCCCcCC--CC
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS-------KFIEQAKEEILKDCD-KLDKCYNVGIQDFKPEDLN--IK 203 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~-------~~le~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~--~~ 203 (883)
++.+|||+|||+|..+..++..+. +|+|+|+|+ .+++.|+++...... +.++++++|+.++.+...+ ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 567999999999999998888765 599999999 999999887655433 3478999998775321111 47
Q ss_pred ccEEEEccccccc
Q psy8372 204 YDVIWIQWVLMFI 216 (883)
Q Consensus 204 FDlVvs~~vL~hl 216 (883)
||+|++..++++-
T Consensus 162 fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 162 PDIVYLDPMYPER 174 (258)
T ss_dssp CSEEEECCCC---
T ss_pred ccEEEECCCCCCc
Confidence 9999998777653
No 290
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.31 E-value=1.9e-06 Score=91.14 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=69.7
Q ss_pred CCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCcc
Q psy8372 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186 (883)
Q Consensus 107 y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~ 186 (883)
|++..-.+......+++.+. ..++.+|||||||+|.++..++..+..+|+|+|+++.|++.++++ . ..+++
T Consensus 9 ~GQnfl~d~~i~~~iv~~~~-----~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~ 79 (249)
T 3ftd_A 9 FGQHLLVSEGVLKKIAEELN-----IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLE 79 (249)
T ss_dssp CCSSCEECHHHHHHHHHHTT-----CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEE
T ss_pred ccccccCCHHHHHHHHHhcC-----CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeE
Confidence 44444445566666666553 246789999999999999988877556899999999999999877 2 34568
Q ss_pred EEEccCCCCCCCcCCCCccEEEEcccccccC
Q psy8372 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 187 ~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ 217 (883)
++++|+.+++.....+.| .|+++ .-.++.
T Consensus 80 ~i~~D~~~~~~~~~~~~~-~vv~N-lPy~i~ 108 (249)
T 3ftd_A 80 VINEDASKFPFCSLGKEL-KVVGN-LPYNVA 108 (249)
T ss_dssp EECSCTTTCCGGGSCSSE-EEEEE-CCTTTH
T ss_pred EEEcchhhCChhHccCCc-EEEEE-Cchhcc
Confidence 899999987654422223 44444 444553
No 291
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.23 E-value=8.2e-06 Score=91.22 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCChHHHHHHHh-----------------CCC-eEEEEeCC-----------HHHHHHHHHHHhhccCCCc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK-----------------HFD-KIDLLEQS-----------SKFIEQAKEEILKDCDKLD 185 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~-----------------g~~-~V~gvD~S-----------~~~le~A~~~~~~~~~~~~ 185 (883)
..+|+|+||++|.++..++.. .+. +|...|+. +.+.+.+++.... .. ..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~-~~ 130 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KI-GS 130 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CT-TS
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CC-Cc
Confidence 579999999999999877654 122 67888987 5555544332110 01 12
Q ss_pred cEEEccCCCCCC-CcCCCCccEEEEcccccccChH-------------------------------------HHHHHHHH
Q psy8372 186 KCYNVGIQDFKP-EDLNIKYDVIWIQWVLMFILDE-------------------------------------DIIKFLNL 227 (883)
Q Consensus 186 ~~~~~d~~~~~~-~~~~~~FDlVvs~~vL~hl~de-------------------------------------d~~~~l~~ 227 (883)
-|+.+....+-. ..+.+++|+|+++.+|||+++. |...+|+.
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444321 1224799999999999998541 12234777
Q ss_pred HHHHhccCcEEEEEecccCC
Q psy8372 228 CKQILNKNGIIIIKDNVASG 247 (883)
Q Consensus 228 ~~r~LKPGG~lvi~~~~~~~ 247 (883)
.++.|+|||++++......+
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCT
T ss_pred HHHHhccCCeEEEEEecCCC
Confidence 79999999999999876544
No 292
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.23 E-value=4.8e-06 Score=98.59 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCChHHH---HHHHhCCC--eEEEEeCCHHHHHHHHHHHhhc-cCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISK---YLLAKHFD--KIDLLEQSSKFIEQAKEEILKD-CDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~---~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
....|||||||+|-+.. .+++.+.. +|++||.|+ |...|++....+ -...++++.+|+.++..++ +.|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPE---KVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPE---KADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSS---CEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCc---ccCEE
Confidence 34579999999999844 33444433 689999997 566677766555 3456799999999987654 89999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
+|-++=..+-.|.....+....|.|||||.++
T Consensus 433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99765544444555578888899999999864
No 293
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.23 E-value=2.5e-06 Score=91.75 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=64.2
Q ss_pred cCCCccccchHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHhhccC
Q psy8372 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCD 182 (883)
Q Consensus 106 ~y~~~~~~~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~---V~gvD~S~~~le~A~~~~~~~~~ 182 (883)
.|++..-.+......+++.+.. .++.+|||||||+|.++..++..+..+ |+|+|+|+.|++.|+++. .
T Consensus 19 ~~GQ~fL~d~~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~ 89 (279)
T 3uzu_A 19 RFGQNFLVDHGVIDAIVAAIRP-----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----G 89 (279)
T ss_dssp CCSCCEECCHHHHHHHHHHHCC-----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----G
T ss_pred cCCccccCCHHHHHHHHHhcCC-----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----C
Confidence 3444444566666666666632 467899999999999999888775432 999999999999999983 2
Q ss_pred CCccEEEccCCCCCCCc
Q psy8372 183 KLDKCYNVGIQDFKPED 199 (883)
Q Consensus 183 ~~~~~~~~d~~~~~~~~ 199 (883)
.+++++++|+.+++...
T Consensus 90 ~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 90 ELLELHAGDALTFDFGS 106 (279)
T ss_dssp GGEEEEESCGGGCCGGG
T ss_pred CCcEEEECChhcCChhH
Confidence 35689999998876543
No 294
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.21 E-value=1.8e-06 Score=101.28 Aligned_cols=110 Identities=12% Similarity=-0.106 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHHHhhccCCC-----ccEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH-------------------FDKIDLLEQSSKFIEQAKEEILKDCDKL-----DKCY 188 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g-------------------~~~V~gvD~S~~~le~A~~~~~~~~~~~-----~~~~ 188 (883)
.++.+|||.|||+|.++..++... ...++|+|+++.+++.|+.++...+... ..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 456799999999999987766531 1269999999999999999876554443 5678
Q ss_pred EccCCCCCCCcCCCCccEEEEcccccccCh------------HHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILD------------EDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 189 ~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d------------ed~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
++|........ .++||+|+++..+..... .....++..+.+.|||||++++..+
T Consensus 248 ~gDtL~~~~~~-~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGEN-LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHT-SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCCccccccc-ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 88876533211 258999999876654321 1124789999999999999998875
No 295
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.16 E-value=3.4e-06 Score=97.04 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecC-----HHHHHH
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQS-----PQQLKQ 409 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~S-----pql~kq 409 (883)
.-.-.+++.+|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.. ..+..++|+.. ..+++.
T Consensus 63 lP~g~~~~~~i~~~ir~~~-~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d-~~~~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQ-NRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIAD-RHKRELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEEC-TTCCEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEe-CCCCeEEECCCChHHHHHHHHH
Confidence 3456789999999999999 68999999999997642 1121 1244432 23677888753 134444
Q ss_pred HHHcc-CC-CcEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 410 LLMVG-SV-DRYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 410 ~l~~~-~~-~rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
.+... .+ -|+|||++|||+| ..+.. |..||+|.|+|....+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 32111 12 2999999999999 66566 889999999999887766654444444
No 296
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.16 E-value=9e-06 Score=98.33 Aligned_cols=110 Identities=10% Similarity=-0.043 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-------------------------------------------CeEEEEeCCHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-------------------------------------------DKIDLLEQSSKF 169 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-------------------------------------------~~V~gvD~S~~~ 169 (883)
.++.+|||.+||+|.++..++..+. ..++|+|+++.|
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 4677999999999999887765421 269999999999
Q ss_pred HHHHHHHHhhccCC-CccEEEccCCCCCCCcCCCCccEEEEcccccc-c-ChHHHHHHHHHHH---HHhccCcEEEEEe
Q psy8372 170 IEQAKEEILKDCDK-LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF-I-LDEDIIKFLNLCK---QILNKNGIIIIKD 242 (883)
Q Consensus 170 le~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h-l-~ded~~~~l~~~~---r~LKPGG~lvi~~ 242 (883)
++.|++++...+.. .+.+.+.|+.++......++||+|+++.-... + ..+++..+.+.+. +.+.|||.+++.+
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999877554 36899999988754432248999999865431 1 1233444444444 4455899999987
No 297
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.12 E-value=6.5e-06 Score=91.33 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh------------C---CC--eEEEEeCCHHHHHHHHHHHhhccC-CCccEEEccCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK------------H---FD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYNVGIQD 194 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~------------g---~~--~V~gvD~S~~~le~A~~~~~~~~~-~~~~~~~~d~~~ 194 (883)
+...+|+|+||++|.++..++.. + .. +|...|+..+....+-+.+..... +..-|+.+....
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 44578999999999888755433 1 22 788899998888877776553210 112345544444
Q ss_pred CC-CCcCCCCccEEEEcccccccCh-------------------------------HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 195 FK-PEDLNIKYDVIWIQWVLMFILD-------------------------------EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 195 ~~-~~~~~~~FDlVvs~~vL~hl~d-------------------------------ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+- ...+.+++|+|+|+.+|||+++ +|...+|+..++.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 31 1122479999999999999854 145667999999999999999988
Q ss_pred cccCC
Q psy8372 243 NVASG 247 (883)
Q Consensus 243 ~~~~~ 247 (883)
....+
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 65543
No 298
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.09 E-value=4.3e-06 Score=88.53 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEE
Q psy8372 131 SDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 131 ~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs 209 (883)
...++.+|||+|||+|.++..++.. +...|.|+|++..+....... ......+..+..++...... +++||+|+|
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~--~~~g~~ii~~~~~~dv~~l~--~~~~DlVls 146 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV--QSLGWNIITFKDKTDIHRLE--PVKCDTLLC 146 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC--CBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc--CcCCCCeEEEeccceehhcC--CCCccEEEe
Confidence 3456779999999999999866655 444788999885431110000 00001223344444322222 368999999
Q ss_pred ccccc---ccCh-HHHHHHHHHHHHHhccC-cEEEEEecc
Q psy8372 210 QWVLM---FILD-EDIIKFLNLCKQILNKN-GIIIIKDNV 244 (883)
Q Consensus 210 ~~vL~---hl~d-ed~~~~l~~~~r~LKPG-G~lvi~~~~ 244 (883)
..+.+ +..| .....++..+.++|+|| |.|++..+.
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 87665 1111 11123578889999999 999997753
No 299
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.09 E-value=1.3e-05 Score=88.63 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C--CC------CccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P--GG------AREFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~--~g------a~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++..|.+.+|+.| .+.||.||.||++.... . +| ..-|.+.- ..|..+.|+ ..|++..-.+
T Consensus 33 P~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D-~~g~~l~LRpd~T~~~aR~~~ 110 (344)
T 1z7m_A 33 LNQVKSLRQIEGRLRKLF-SLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIK-HEGQSITLRYDFTLPLVRLYS 110 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEEC-TTCCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecCcccCcHHHHhhccCCccccccccEEEEEC-CCCCEEecCCCCcHHHHHHHH
Confidence 445678899999999999 68999999999996631 0 12 12254432 236777887 3343444332
Q ss_pred HccCC---CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MVGSV---DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~~~~---~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
.... -|+|+|++|||+|.++..|..||+|+++|....+-
T Consensus 111 -~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 111 -QIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp -TCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCH
T ss_pred -hcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCC
Confidence 2222 39999999999999888899999999999988763
No 300
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.08 E-value=2.9e-06 Score=92.26 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cC-CCCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DL-NIKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~~FDlVv 208 (883)
.++.+|||+|||+|..+..++.... .+|+|+|.|+.|++.|++++...+ .+++++++|+.++... .. ..+||.|+
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 4678999999999999998888752 479999999999999999987654 5678999998775311 00 14799998
Q ss_pred Ecc
Q psy8372 209 IQW 211 (883)
Q Consensus 209 s~~ 211 (883)
+..
T Consensus 104 ~D~ 106 (301)
T 1m6y_A 104 MDL 106 (301)
T ss_dssp EEC
T ss_pred EcC
Confidence 855
No 301
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.06 E-value=1.5e-06 Score=97.98 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc--cCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD--CDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|++++... +..+++++++|+.++.....+++||+|++..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP 171 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP 171 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence 47899999999999998666554 47999999999999999998865 4456789999998753211124799999865
Q ss_pred c
Q psy8372 212 V 212 (883)
Q Consensus 212 v 212 (883)
.
T Consensus 172 P 172 (410)
T 3ll7_A 172 A 172 (410)
T ss_dssp E
T ss_pred C
Confidence 3
No 302
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.04 E-value=2.1e-05 Score=84.68 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhc-----cCCCccE
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKD-----CDKLDKC 187 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~-----~~~~~~~ 187 (883)
+.....+.+....... .+...+||=||.|.|..+..+++.. ..+|+.||+++.+++.|++.+... ...+++.
T Consensus 65 De~~YhE~l~h~~l~~--~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v 142 (294)
T 3o4f_A 65 DEFIYHEMMTHVPLLA--HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKL 142 (294)
T ss_dssp THHHHHHHHHHHHHHH--SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE
T ss_pred cHHHHHHHHHHHHHhh--CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEE
Confidence 4444555555543221 2456799999999999999887753 458999999999999999986532 3567789
Q ss_pred EEccCCCCCCCcCCCCccEEEEcccccccChHH--HHHHHHHHHHHhccCcEEEEEe
Q psy8372 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED--IIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 188 ~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded--~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..|...+.... .++||+|+....=..-+... -..+++.++++|+|||+++...
T Consensus 143 ~~~Dg~~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 143 VIDDGVNFVNQT-SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCTTTTTSCS-SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EechHHHHHhhc-cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 999998876543 57899999754211111100 1379999999999999999875
No 303
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.03 E-value=1.6e-05 Score=89.71 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCCC---CCC----ccceeccCCCCceeeEe--cCHHHHHHHHHc--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTP---GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMV-- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~---~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~-- 413 (883)
-.-.+++..|.+.+|+.| ...||.||.||++....- +|. .-|.+.- ..|..+.|+ ..|++..-....
T Consensus 21 P~~~~~~~~i~~~l~~~~-~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D-~~g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEI-NLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLD-QQGNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEEC-TTSCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCCccccceEEEEC-CCCCEEEECCCCHHHHHHHHHhhcc
Confidence 344678899999999999 689999999999965421 121 1254432 236777886 334343332211
Q ss_pred -cCCC-cEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 414 -GSVD-RYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
.... |.|+|++|||.|.++..|..||+|+++|..+.+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 1222 999999999999998889999999999998876
No 304
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.02 E-value=7.2e-06 Score=86.87 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHhhccCCCccEEEcc
Q psy8372 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191 (883)
Q Consensus 114 ~~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g~~~--V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d 191 (883)
+......+++.+. ..++.+|||||||+|.++. + ..+ .+ |+|+|+++.|++.++++.... .+++++++|
T Consensus 6 d~~i~~~iv~~~~-----~~~~~~VLEIG~G~G~lt~-l-~~~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D 75 (252)
T 1qyr_A 6 DQFVIDSIVSAIN-----PQKGQAMVEIGPGLAALTE-P-VGE-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQD 75 (252)
T ss_dssp CHHHHHHHHHHHC-----CCTTCCEEEECCTTTTTHH-H-HHT-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSC
T ss_pred CHHHHHHHHHhcC-----CCCcCEEEEECCCCcHHHH-h-hhC-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECc
Confidence 3444555555552 2467799999999999998 5 444 45 999999999999999876532 356889999
Q ss_pred CCCCCCCcC---CCCccEEEEcccccccC
Q psy8372 192 IQDFKPEDL---NIKYDVIWIQWVLMFIL 217 (883)
Q Consensus 192 ~~~~~~~~~---~~~FDlVvs~~vL~hl~ 217 (883)
+.+++.... ++..|.|+++.. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~vvsNlP-Y~i~ 103 (252)
T 1qyr_A 76 AMTFNFGELAEKMGQPLRVFGNLP-YNIS 103 (252)
T ss_dssp GGGCCHHHHHHHHTSCEEEEEECC-TTTH
T ss_pred hhhCCHHHhhcccCCceEEEECCC-CCcc
Confidence 988754321 012356666544 3453
No 305
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.02 E-value=5.3e-06 Score=98.07 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCChHHHHHHHh----C---------C-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK----H---------F-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE-- 198 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~----g---------~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~-- 198 (883)
+..|||||||+|-++...+.. + . .+|++||.|+.++..++.+..+.-...++++.+|+.++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 457999999999996433221 2 1 28999999998777666665544456689999999988641
Q ss_pred -cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 199 -DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 199 -~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
...++.|+|+|-++=.....+-...+|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 00258999999776544444445668888899999999855
No 306
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.01 E-value=1.5e-05 Score=90.66 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++.+|.+.+|+-| ++.||.||.||++.... .+ |. .-|.+.-. .|..+.|+ ..|.+..-.+
T Consensus 15 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 15 PGETAIWQRIEGTLKNVL-GSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHH
Confidence 345678999999999999 78999999999997642 11 32 22555332 36778887 3333443322
Q ss_pred Hcc---CC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MVG---SV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~~---~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
... .+ -|.|+|+++||+|.++..|..||+|+++|....+-
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCS
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCC
Confidence 111 22 39999999999999888899999999999988763
No 307
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.00 E-value=1.8e-05 Score=90.06 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CC-CC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PG-GA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~-ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++.+|.+.+|+-| .+.||.||.||++.... .+ |. .-|.+.- ..|..+.|+ ..|++..-.+
T Consensus 14 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D-~~g~~l~Lrpd~t~~~ar~~~ 91 (421)
T 1h4v_B 14 GKELRMHQRIVATARKVL-EAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQD-RGGRSLTLRPEGTAAMVRAYL 91 (421)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEecccccccHHHhhhccCCcccccccceEEEEC-CCCCEEeeCCcchHHHHHHHH
Confidence 344678899999999999 78999999999997642 11 32 1244432 236777786 3333443322
Q ss_pred Hc----cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH
Q psy8372 412 MV----GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR 451 (883)
Q Consensus 412 ~~----~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~ 451 (883)
.. ..+ -|.|+|+++||+|.++..|..||+|+++|....+-
T Consensus 92 ~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~ 136 (421)
T 1h4v_B 92 EHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSEN 136 (421)
T ss_pred hccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCC
Confidence 11 122 39999999999998888889999999999987663
No 308
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.99 E-value=4.8e-06 Score=94.16 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecCHHH-HHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQSPQQ-LKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~Spql-~kq~l~~~ 414 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.++ ..+..++|+..... .-.+ ...
T Consensus 27 P~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d--~~~~~~~LrP~~~~~~~~~-~~~ 102 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQI-FNQ 102 (401)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEE--ETTEEEEECSCSHHHHHHH-HTS
T ss_pred chHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEe--cCCceEEEcCCCCHHHHHH-HHh
Confidence 445778999999999999 68999999999997742 1121 124422 23677889743332 2221 121
Q ss_pred ------CC-CcEEEEeeceecCCC--CCC--CCcceecccccccCCCHHHHHHH
Q psy8372 415 ------SV-DRYFQIARCYRDEST--RPD--RQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 415 ------~~-~rvf~I~~~FR~E~~--~~~--r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
.+ -|+||||+|||+|.+ ... |..||+|.|+|. |.+.+++...
T Consensus 103 ~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e 155 (401)
T 1evl_A 103 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDE 155 (401)
T ss_dssp SCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred hhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHH
Confidence 22 299999999999986 445 889999999996 5564444443
No 309
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.98 E-value=5.1e-06 Score=88.28 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=68.5
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-------c-C-CCccEEEccCCCCCCCcCCCCccE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-------C-D-KLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-------~-~-~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+|||+|||+|..+..++..+.. |+++|.++.+.+.+++++... . . .+++++++|..++.... .++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-SSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-cccCCE
Confidence 79999999999999988888774 999999998877776654322 1 1 34688999987754322 247999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNG 236 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG 236 (883)
|++...+++-.. ..++++..++|++.+
T Consensus 168 V~lDP~y~~~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHKQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCCCC--------HHHHHHHHHS
T ss_pred EEEcCCCCCccc---chHHHHHHHHHHHhh
Confidence 999988866422 256777778887755
No 310
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.98 E-value=5.5e-05 Score=77.19 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc---CCCccEEEccCCCCC--------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC---DKLDKCYNVGIQDFK-------------- 196 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~---~~~~~~~~~d~~~~~-------------- 196 (883)
+..+|||+||| +.+..++.....+|+.+|.++...+.|++++...+ ..+++++.+++.+..
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 45699999985 56655554323489999999999999999998765 456788888876431
Q ss_pred C--------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 197 P--------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 197 ~--------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+ ....++||+|+...-. ....+..+.+.|+|||++++.+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 0 0012689999997631 2356666789999999996544
No 311
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.97 E-value=4.3e-05 Score=89.48 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHhhccC--CCccEE
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKH----FDKIDLLEQSSKFIEQAKEEILKDCD--KLDKCY 188 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~g----~~~V~gvD~S~~~le~A~~~~~~~~~--~~~~~~ 188 (883)
......++..++.......++.+|||.+||+|.++..++... ...++|+|+++.++..|+.++...+. ....+.
T Consensus 202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~ 281 (542)
T 3lkd_A 202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH 281 (542)
T ss_dssp CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE
Confidence 344445555554321112467799999999999988776652 33799999999999999998765544 344678
Q ss_pred EccCCCCC-CCcCCCCccEEEEcccccc-------------------cCh--HHHHHHHHHHHHHhc-cCcEEEEEecc
Q psy8372 189 NVGIQDFK-PEDLNIKYDVIWIQWVLMF-------------------ILD--EDIIKFLNLCKQILN-KNGIIIIKDNV 244 (883)
Q Consensus 189 ~~d~~~~~-~~~~~~~FDlVvs~~vL~h-------------------l~d--ed~~~~l~~~~r~LK-PGG~lvi~~~~ 244 (883)
++|..... +.....+||+|+++.-+.. ++. ..--.+++.+.+.|| |||++.+..+.
T Consensus 282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 88876542 1122368999999754321 100 001258999999999 99999888753
No 312
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.96 E-value=8.7e-06 Score=92.50 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----C-CCC------ccceeccCCCCceeeEe--cCHHHH---H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----P-GGA------REFVVPTHEPNKFYSLV--QSPQQL---K 408 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~-~ga------~~f~v~~~~~~~~~~L~--~Spql~---k 408 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... . ||. .-|.+.- ..+..++|+ ..|.+. .
T Consensus 13 p~~~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D-~~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 13 PEDSKKWRYIENQLDELM-TFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD-KGDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHCC-----------CCEEECH-HHHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEc-CCCCEEEeCCCChHHHHHHHH
Confidence 345678999999999999 68999999999997741 1 232 1233321 124567786 222232 2
Q ss_pred HHHHc--cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCCH----HHHHHHHHHHHH
Q psy8372 409 QLLMV--GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTR----DDVMRLIEELLC 463 (883)
Q Consensus 409 q~l~~--~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~~----~dvm~~~E~li~ 463 (883)
+.... ..+ -|+|+|++|||+|.++..|..||+|+|+|..+.+- .+++.++.++++
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~ 152 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQ 152 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHH
Confidence 22121 123 39999999999998888888999999999988762 344544444443
No 313
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.95 E-value=2e-05 Score=90.85 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCC-------ccceeccCCCCceeeEe--cCHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGA-------REFVVPTHEPNKFYSLV--QSPQQLKQLL 411 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga-------~~f~v~~~~~~~~~~L~--~Spql~kq~l 411 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.-...|..+.|+ ..|.+..-..
T Consensus 43 P~~~~~~~~l~~~i~~~~-~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~ 121 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLL-RAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAI 121 (467)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHH
Confidence 345678999999999999 68999999999997642 1133 12544322216778887 3343433221
Q ss_pred H---ccCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC--H--HHHHHHHHHHHH
Q psy8372 412 M---VGSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--R--DDVMRLIEELLC 463 (883)
Q Consensus 412 ~---~~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~--~dvm~~~E~li~ 463 (883)
. ...+ -|.|+|++|||+|.++..|..||+|+++|+...+ . .+++.++.++++
T Consensus 122 ~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~ 181 (467)
T 4e51_A 122 EHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWE 181 (467)
T ss_dssp HTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHH
T ss_pred HcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 1 1112 3999999999999998889999999999997765 2 344444444443
No 314
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.94 E-value=2.2e-05 Score=89.65 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CCC----ccceeccCCCCceeeEe--cCHHHHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GGA----REFVVPTHEPNKFYSLV--QSPQQLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~ga----~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~ 414 (883)
-.-.+++.+|.+.+|+-| .+.||.||.||++.... . .|. .-|.+.-. .|..+.|+ ..|.+..-.+...
T Consensus 17 P~~~~~~~~i~~~i~~~~-~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~ 94 (434)
T 1wu7_A 17 PEDMDVEKFIFKTAEEAA-EAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRK 94 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHhhhccCCccccceEEEECC-CCCEEEeCCCChHHHHHHHHhcC
Confidence 445678999999999999 68999999999997742 1 222 12554322 36778886 3333444332111
Q ss_pred C--C-CcEEEEeeceecCCCCCCCCcceecccccccCCC
Q psy8372 415 S--V-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT 450 (883)
Q Consensus 415 ~--~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~ 450 (883)
. + -|.|+|+++||+|.++..|..||+|+++|..+.+
T Consensus 95 ~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 95 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 133 (434)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred CCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCC
Confidence 1 2 2999999999999888889999999999998877
No 315
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.93 E-value=1.2e-05 Score=91.47 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC----CCcc-ceeccCCCCceeeEe-cCHHH----HHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG----GARE-FVVPTHEPNKFYSLV-QSPQQ----LKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~----ga~~-f~v~~~~~~~~~~L~-~Spql----~kq~ 410 (883)
..-.+++..|.+.+++.+ .+.||.||.||+|.... .| .+.. |.+. +..++|+ +|.+- |++.
T Consensus 169 p~ga~l~~~L~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~----~~~l~LrPt~e~~i~~~~~~~ 243 (425)
T 2dq3_A 169 GWGARLERALINFMLDLH-TKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE----RDNLYLIPTAEVPLTNLYREE 243 (425)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT----TTCCEECSSTHHHHHGGGTTE
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHHhcCCCCcChhhheEec----CCeEEEcCCCcHHHHHHHHhh
Confidence 556788999999999999 57999999999998752 11 1222 3332 4566786 44442 2222
Q ss_pred HHc-cCCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
++. ..+. |+|++++|||+|.+... |..||+|+|++. |.+.++..+..++++..
T Consensus 244 i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~ 305 (425)
T 2dq3_A 244 ILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKD 305 (425)
T ss_dssp EEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHH
Confidence 111 1222 99999999999986522 678999999977 54444455555555543
No 316
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.91 E-value=5e-05 Score=91.16 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCC----CeEEEEeCCHHHHHHH--HHHHhhc----cCCCccEEEccCCCCCCCcCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHF----DKIDLLEQSSKFIEQA--KEEILKD----CDKLDKCYNVGIQDFKPEDLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~----~~V~gvD~S~~~le~A--~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~ 202 (883)
.++.+|||.|||+|.++..++.... .+++|+|+++.+++.| +.++..+ +.....+...|+.+.... ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-DFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-GGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-ccC
Confidence 3578999999999999987776542 2699999999999999 4444321 111123344444432211 135
Q ss_pred CccEEEEcccccc-cC-hH-------------------------HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 203 KYDVIWIQWVLMF-IL-DE-------------------------DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 203 ~FDlVvs~~vL~h-l~-de-------------------------d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
+||+|+++.-.-. .. +. -...++..+.+.|+|||++++..+.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 8999999876521 11 00 1335788999999999999998853
No 317
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.89 E-value=4.9e-05 Score=85.03 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCC-----CccceeccCCCCceeeEe--cCHHHHHHHHH---c
Q psy8372 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGG-----AREFVVPTHEPNKFYSLV--QSPQQLKQLLM---V 413 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~g-----a~~f~v~~~~~~~~~~L~--~Spql~kq~l~---~ 413 (883)
-.+++..|.+.+|+.| .+.||.||.||++.... .+| ..-|.+.- ..|..+.|+ ..|++..-... .
T Consensus 36 ~~~~~~~i~~~i~~~f-~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D-~~g~~l~LRpd~T~~~aR~~~~~~~~ 113 (373)
T 3rac_A 36 FAKRRRAVETRLLSFV-EDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFD-GGGDAVALRPEMTPSIARMAAPRVAA 113 (373)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCC-CSSSCEEECSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-HHcCCeEEECCceeeHHHHhhcCCccchhceEEEEC-CCCCEEEECCcCHHHHHHHHHhcccc
Confidence 3567889999999999 68999999999996631 111 12243322 236777886 33334322211 1
Q ss_pred cC-CCcEEEEeeceecCCC------CCCCCcceecccccccCCC---H--HHHHHHHHHHHH
Q psy8372 414 GS-VDRYFQIARCYRDEST------RPDRQPEFTQLDIELSFTT---R--DDVMRLIEELLC 463 (883)
Q Consensus 414 ~~-~~rvf~I~~~FR~E~~------~~~r~~EFt~le~e~~~~~---~--~dvm~~~E~li~ 463 (883)
.. --|.|+|++|||+|.+ ...|..||+|+++|....+ . .+++.++-++++
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~ 175 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175 (373)
T ss_dssp TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 12 2499999999999988 6778899999999997765 1 344444444443
No 318
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.88 E-value=3e-05 Score=89.04 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc----cceeccCCCCceeeEe--cCHHHHHHHHHccC
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR----EFVVPTHEPNKFYSLV--QSPQQLKQLLMVGS 415 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~----~f~v~~~~~~~~~~L~--~Spql~kq~l~~~~ 415 (883)
.-.+++..|.+.+|+.| ...||.||.||++.... ..|.. -|.+.- ..|..+.|+ ..|++..-.+....
T Consensus 41 ~~~~~~~~i~~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D-~~g~~l~LRpd~T~~~aR~~~~~~~ 118 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATA-KTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFIT-KGGHRVALRPEMTPSLARLLLGKGR 118 (456)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEEC-SSSCEEEECSCSHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHHH-HHCCCEEEECCcEeehhhhccccccchhhceEEEEc-CCCCEEecCCcCHHHHHHHHHhcCc
Confidence 34568899999999999 68999999999997642 11321 244432 236777886 33444443322111
Q ss_pred ----CCcEEEEeeceecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHHH
Q psy8372 416 ----VDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLCY 464 (883)
Q Consensus 416 ----~~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~~ 464 (883)
--|.|+|++|||.|.++..|..||+|+++|+.+.+ -.+++.++.++++.
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp TCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 13899999999999998889999999999998765 23455555444443
No 319
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.88 E-value=3.3e-05 Score=91.33 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEe-cCHH----HHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLV-QSPQ----QLKQL 410 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~-~Spq----l~kq~ 410 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..|. .-|.+.. ..+..++|+ .+-+ +|+..
T Consensus 44 P~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d-~~~~~~~LrP~~~~~~~~~~~~~ 121 (572)
T 2j3l_A 44 PLANRVLEKLKTIMREEF-EKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKD-RNDRDYILGPTHEETFTELIRDE 121 (572)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEEC-TTCCEEEECSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEECCccccHHHHHhcCCccccchheEEEec-CCCCeEEEccccHHHHHHHHHhh
Confidence 455789999999999999 68999999999997752 1121 1244432 235778886 2222 34443
Q ss_pred HHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 411 LMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 411 l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
+.. ..+. |+|||++|||+|.+. .. |..||+|.|+|....+..++...++++
T Consensus 122 ~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 122 INSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 211 1233 999999999999884 33 779999999999888766665555554
No 320
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.86 E-value=1e-05 Score=86.02 Aligned_cols=128 Identities=13% Similarity=-0.036 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHh-------CC------CeEEEEeCCH---HHHH-----------HHHHHHhhc------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAK-------HF------DKIDLLEQSS---KFIE-----------QAKEEILKD------ 180 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~-------g~------~~V~gvD~S~---~~le-----------~A~~~~~~~------ 180 (883)
+..+|||+|||+|..+..++.. .+ -+++++|..+ .++. .|++.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999988765543 33 2799999776 4444 455554321
Q ss_pred --------cCCCccEEEccCCCCCCCcCC---CCccEEEEcc-cccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 181 --------CDKLDKCYNVGIQDFKPEDLN---IKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 181 --------~~~~~~~~~~d~~~~~~~~~~---~~FDlVvs~~-vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
...+++++.+|+.+..+.... ..||+|+... .-..-++--...+++.++++|+|||+|+..+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------ 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence 112346778887664322111 2799999853 2111111002479999999999999988422
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
....++..+.++||.+...
T Consensus 214 -------------aa~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 214 -------------SAGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp -------------CBHHHHHHHHHHTEEEEEE
T ss_pred -------------CCHHHHHHHHHCCCEEEeC
Confidence 1236788899999997643
No 321
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.80 E-value=4.4e-05 Score=89.53 Aligned_cols=108 Identities=10% Similarity=-0.101 Sum_probs=75.3
Q ss_pred CeEEEEcCCCChHHHHHHHhC----------------CCeEEEEeCCHHHHHHHHHHHhhccCC-CccEEEccCCCCCCC
Q psy8372 136 TRVLDVGAGIGRISKYLLAKH----------------FDKIDLLEQSSKFIEQAKEEILKDCDK-LDKCYNVGIQDFKPE 198 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g----------------~~~V~gvD~S~~~le~A~~~~~~~~~~-~~~~~~~d~~~~~~~ 198 (883)
.+|||.+||+|.++..++... ...++|+|+++.+++.|+.++...+.. .+.+.++|....+..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 499999999999887664321 226999999999999999987655332 222356665543322
Q ss_pred cCCCCccEEEEcccccc-------------------------cChH--HHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 199 DLNIKYDVIWIQWVLMF-------------------------ILDE--DIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~h-------------------------l~de--d~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
. ..+||+|+++.-+.. ++.. .--.+++.+.+.|||||++++..+.
T Consensus 326 ~-~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 326 P-DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp T-TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred c-cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 1 368999999765542 1110 0126899999999999999988753
No 322
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.79 E-value=1.9e-05 Score=83.80 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc--cCCCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV--GIQDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~FDlVv 208 (883)
..++.+|||+|||+|.++..++.. +...|.|+|++..+...+... ......+..+.. |+..+. ++++|+|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--~~~g~~ii~~~~~~dv~~l~----~~~~DvVL 161 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--TTLGWNLIRFKDKTDVFNME----VIPGDTLL 161 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--CBTTGGGEEEECSCCGGGSC----CCCCSEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--ccCCCceEEeeCCcchhhcC----CCCcCEEE
Confidence 357779999999999999977654 444799999987642222110 000111122222 322221 36899999
Q ss_pred EcccccccCh---HH--HHHHHHHHHHHhccC--cEEEEEecc
Q psy8372 209 IQWVLMFILD---ED--IIKFLNLCKQILNKN--GIIIIKDNV 244 (883)
Q Consensus 209 s~~vL~hl~d---ed--~~~~l~~~~r~LKPG--G~lvi~~~~ 244 (883)
|..+.. ... ++ ...+|.-+.++|+|| |.|++..+.
T Consensus 162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 987766 221 11 224577788999999 999998854
No 323
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.78 E-value=3.7e-05 Score=88.74 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C---CCC-----c-cceeccCC---CCceeeEec-CHH----HH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-P---GGA-----R-EFVVPTHE---PNKFYSLVQ-SPQ----QL 407 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~---~ga-----~-~f~v~~~~---~~~~~~L~~-Spq----l~ 407 (883)
.-.+++..|.+.+|+.| .+.||.||.||+|.... - .|. . -|.+.... .+..++|+. +-+ +|
T Consensus 42 ~g~~l~~~I~~~~r~~~-~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 34678899999999999 68999999999998753 1 221 1 24443221 146788873 322 35
Q ss_pred HHHHHc-cCCC-cEEEEeeceecCCCCCC--CCcceecccccccCCCHHHHHHHHHHH
Q psy8372 408 KQLLMV-GSVD-RYFQIARCYRDESTRPD--RQPEFTQLDIELSFTTRDDVMRLIEEL 461 (883)
Q Consensus 408 kq~l~~-~~~~-rvf~I~~~FR~E~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~l 461 (883)
++.+.. ..+. |+|||++|||+|..... |..||+|.|++..|.+.++....+..+
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 554221 1233 99999999999965446 889999999999999877776666555
No 324
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.77 E-value=9.6e-05 Score=84.96 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC----CCCCC--c-cceeccCCCCceeeEec--CHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR----TPGGA--R-EFVVPTHEPNKFYSLVQ--SPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~----~~~ga--~-~f~v~~~~~~~~~~L~~--Spql~kq~l~~~~ 415 (883)
-.-.+++..|.+.+|+.| ...||.||.||+|... ...|. . -|.+.- ..|..+.|+. .+++..-.+ ...
T Consensus 25 P~~~~~~~~i~~~~~~~~-~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D-~~g~~l~LRPd~T~~~aR~~~-~~~ 101 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD-QGGELLSLRYDLTVPFARYLA-MNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSCC----CCCBBCC-CSSCCEEECSCSHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhccccCcCcceeEEEEC-CCCCEEEeCCcCcHHHHHHHH-hcC
Confidence 455678999999999999 6899999999999653 11222 1 243322 2467788872 333443322 222
Q ss_pred C--CcEEEEeeceecCCCC--CCCCcceecccccccCC-C----HHHHHHHHHHHHHH
Q psy8372 416 V--DRYFQIARCYRDESTR--PDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCY 464 (883)
Q Consensus 416 ~--~rvf~I~~~FR~E~~~--~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~ 464 (883)
. -|.|+|+++||.|..+ ..|..||+|+++|..+. + -.+++.++-++++.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 2 2899999999999774 35778999999999774 2 23455555544443
No 325
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.76 E-value=3.9e-05 Score=91.99 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCC-ceeeEecCH-HHHHHHHHc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPN-KFYSLVQSP-QQLKQLLMV 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~-~~~~L~~Sp-ql~kq~l~~ 413 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|. .-|.+.. ..+ ..++|+.-. +-+-.+...
T Consensus 268 P~g~~~~~~l~~~ir~~~-~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKE-VSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH-HHcCCEEEECCeeccHHHHhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHh
Confidence 455889999999999999 68999999999997752 1222 1133211 125 778887322 222222111
Q ss_pred c-----CCC-cEEEEeeceecCCCCC--C--CCcceecccccccCCCHHHHHH
Q psy8372 414 G-----SVD-RYFQIARCYRDESTRP--D--RQPEFTQLDIELSFTTRDDVMR 456 (883)
Q Consensus 414 ~-----~~~-rvf~I~~~FR~E~~~~--~--r~~EFt~le~e~~~~~~~dvm~ 456 (883)
. .+. |+||||+|||+|.++. . |..||||.|+|. |.+.+++.+
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d 397 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKE 397 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred hhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHH
Confidence 1 122 9999999999999863 3 779999999998 555444333
No 326
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.73 E-value=6.1e-05 Score=86.51 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCC-CCceeeEec-CHHHHHHHHH
Q psy8372 345 QHNLRFRSKFLMRTREFL-ATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHE-PNKFYSLVQ-SPQQLKQLLM 412 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~-~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~-~~~~~~L~~-Spql~kq~l~ 412 (883)
-.-.+++..|.+.+|+.+ . +.||.||.||+|.... ..|. . -|.+.... .+..++|+. +-+-+-.+ .
T Consensus 61 P~g~~l~~~l~~~~~~~~~~-~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~-~ 138 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKF-KFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLI-F 138 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHH-H
T ss_pred ccHHHHHHHHHHHHHHHHHH-hcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHH-H
Confidence 455789999999999998 6 6899999999997642 1121 1 24443221 256788863 32222222 2
Q ss_pred ccC------CC-cEEEEeeceecCCCC--CC--CCcceecccccccCCCHHHHHHHHHHHH
Q psy8372 413 VGS------VD-RYFQIARCYRDESTR--PD--RQPEFTQLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 413 ~~~------~~-rvf~I~~~FR~E~~~--~~--r~~EFt~le~e~~~~~~~dvm~~~E~li 462 (883)
... +. |+|++++|||+|... .. |..||+|.|++. |.+.+++.+.+++++
T Consensus 139 ~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i 198 (460)
T 3uh0_A 139 GKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSL 198 (460)
T ss_dssp TTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHH
T ss_pred HhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHH
Confidence 221 22 899999999999885 45 789999999997 555555555444433
No 327
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.72 E-value=5e-05 Score=87.31 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCC-----Cc-cceeccCC---CCceeeEe-cCHHH----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGG-----AR-EFVVPTHE---PNKFYSLV-QSPQQ---- 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~g-----a~-~f~v~~~~---~~~~~~L~-~Spql---- 406 (883)
-.-.+++..|.+.+|+.| .+.||.||.||+|.... ..| +. -|.+.... .+..++|+ .+-+.
T Consensus 35 P~g~~l~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~ 113 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLL-DESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYM 113 (459)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHH
Confidence 344678999999999999 68999999999997742 122 11 25444321 15678887 33332
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCC-CCC--CCccee-cccccccCCCHHHHHHHHHHHH
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDEST-RPD--RQPEFT-QLDIELSFTTRDDVMRLIEELL 462 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~-~~~--r~~EFt-~le~e~~~~~~~dvm~~~E~li 462 (883)
|++.+.. ..+. |+|||++|||+|.. ... |..||+ |.|.+..+.+.+++...+++++
T Consensus 114 ~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i 175 (459)
T 1nj8_A 114 MKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAI 175 (459)
T ss_dssp HHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHH
Confidence 3332111 1222 99999999999988 445 779999 9999999998777666544444
No 328
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.72 E-value=9.2e-05 Score=86.45 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccC----CCCCCc---cceeccCCCCceeeEec--CHHHHHHHHHcc
Q psy8372 344 MQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKR----TPGGAR---EFVVPTHEPNKFYSLVQ--SPQQLKQLLMVG 414 (883)
Q Consensus 344 ~~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~----~~~ga~---~f~v~~~~~~~~~~L~~--Spql~kq~l~~~ 414 (883)
+-.-.+++..|.+.+|+.| ...||.||.||++... ...|.. -|.+.- ..|..+.|+. .+.+..-.+ ..
T Consensus 77 lP~~~~~~~~ie~~i~~~~-~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D-~~g~~l~LRPd~T~~~aR~~~-~~ 153 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCF-KRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD-QGGELLSLRYDLTVPFARYLA-MN 153 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHHTCEECBCCSEEEHHHHHCC------CSCBBCC-TTSCCEEECSCSHHHHHHHHH-HT
T ss_pred CHHHHHHHHHHHHHHHHHH-HHCCCeEEECcccCcHHHhhcccCcCcceeEEEEC-CCCCEEEeCCcCcHHHHHHHH-hC
Confidence 3455788999999999999 6899999999999653 112221 133322 2467788872 233433222 22
Q ss_pred CC--CcEEEEeeceecCCCC--CCCCcceecccccccCC-C----HHHHHHHHHHHHHH
Q psy8372 415 SV--DRYFQIARCYRDESTR--PDRQPEFTQLDIELSFT-T----RDDVMRLIEELLCY 464 (883)
Q Consensus 415 ~~--~rvf~I~~~FR~E~~~--~~r~~EFt~le~e~~~~-~----~~dvm~~~E~li~~ 464 (883)
.. -|.|+||++||.|.++ ..|..||+|+++|+.+. + -.+++.++-++++.
T Consensus 154 ~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 154 KLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp TCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 22 2899999999999874 46779999999999874 2 23455555555444
No 329
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.71 E-value=6.2e-05 Score=87.22 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--C--CCC------ccceeccCC---CCceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--P--GGA------REFVVPTHE---PNKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--~--~ga------~~f~v~~~~---~~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... . .|. .-|.+.... .+..++|+ +|=+ +
T Consensus 52 P~G~~i~~~L~~~~~~~~-~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 52 PYGFFMENAIMRLCEEEY-AKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 344678899999999999 68999999999997643 1 221 124443221 14578886 3322 3
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCC-CCCC--CCcceecccccccCCCHHHHHHHHHHHH---HHHh-ccCCCCceeee
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDES-TRPD--RQPEFTQLDIELSFTTRDDVMRLIEELL---CYCL-NIPTRTFSRIS 477 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~-~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li---~~i~-~~~~~~f~rit 477 (883)
|++.+.. ..+. |+||+++|||+|. .... |..||+|.|.+....+.+++.+.+++++ ..++ +.+.-||...+
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~ 210 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLR 210 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEE
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeee
Confidence 4443211 1233 9999999999994 4444 7799999999997789888888777776 5666 66666665443
No 330
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.68 E-value=6.1e-05 Score=87.47 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---C-CC-----C-ccceeccCC---CCceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---P-GG-----A-REFVVPTHE---PNKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~-~g-----a-~~f~v~~~~---~~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.| .+ ||.||.||+|.... - .| + .-|.+.... .+..++|+ +|-+ +
T Consensus 68 P~g~~l~~~i~~~~~~~~-~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~ 145 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRIL-DR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-Hc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHH
Confidence 344678889999999999 78 99999999997742 1 12 1 124443221 14567886 3332 3
Q ss_pred HHHHHHcc-CCC-cEEEEeeceecCCC-CCC--CCccee-cccccccCCCHHHHHHHHHHHHH
Q psy8372 407 LKQLLMVG-SVD-RYFQIARCYRDEST-RPD--RQPEFT-QLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 407 ~kq~l~~~-~~~-rvf~I~~~FR~E~~-~~~--r~~EFt-~le~e~~~~~~~dvm~~~E~li~ 463 (883)
|++.+... .+. |+|||++|||+|.. ... |..||+ |.|++..+.+.++..+.+++++.
T Consensus 146 ~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVE 208 (501)
T ss_dssp HHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHH
Confidence 44432211 233 99999999999987 445 778999 99999999998777777666554
No 331
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.68 E-value=4.3e-05 Score=88.21 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-----c-cceeccCCCCceeeEecC--HH---HHHHHH
Q psy8372 346 HNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-----R-EFVVPTHEPNKFYSLVQS--PQ---QLKQLL 411 (883)
Q Consensus 346 ~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-----~-~f~v~~~~~~~~~~L~~S--pq---l~kq~l 411 (883)
.-.+++..|.+.+|+.| .+.||.||.||+|.... .+|. . -|.++ ..+..++|+.- +. +|++.+
T Consensus 47 ~g~~~~~~i~~~~~~~~-~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d--~~~~~l~LRP~~t~~i~~~~~~~~ 123 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFH-ARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD--IEGHEFAVKPMNCPYHILLFLNEV 123 (471)
T ss_dssp THHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEE--ETTEEEEECSCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHcCCEEEECCeeeehHHhhhccCccccccceEEEe--cCCcEEEEccccHHHHHHHHHhhh
Confidence 44678999999999999 68999999999998752 1221 1 25553 23677888722 22 344432
Q ss_pred Hcc----CCC-cEEEEeeceecCCCC--CC--CCcceecccccccCC
Q psy8372 412 MVG----SVD-RYFQIARCYRDESTR--PD--RQPEFTQLDIELSFT 449 (883)
Q Consensus 412 ~~~----~~~-rvf~I~~~FR~E~~~--~~--r~~EFt~le~e~~~~ 449 (883)
-.. .+. |+|||++|||+|... .. |..||+|.|+|....
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~ 170 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP 170 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE
T ss_pred hhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC
Confidence 221 444 999999999999876 56 889999999999653
No 332
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.63 E-value=8.2e-05 Score=85.70 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC---c-cceeccCC--------------CCceeeEe--
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA---R-EFVVPTHE--------------PNKFYSLV-- 401 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga---~-~f~v~~~~--------------~~~~~~L~-- 401 (883)
-.-..++..|.+.+|+.| ...||.||.||++.... .+|. . -|.+.-.. .+..+.|+
T Consensus 23 P~~~~~~~~i~~~l~~~~-~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 344568899999999999 68999999999995431 1122 1 24432221 25677886
Q ss_pred cCHHHHHHHHHc---cCC-CcEEEEeeceecCCCCCCCCcceecccccccCCC--H----HHHHHHHHHHHHHH
Q psy8372 402 QSPQQLKQLLMV---GSV-DRYFQIARCYRDESTRPDRQPEFTQLDIELSFTT--R----DDVMRLIEELLCYC 465 (883)
Q Consensus 402 ~Spql~kq~l~~---~~~-~rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~~--~----~dvm~~~E~li~~i 465 (883)
-.|.+..-.+.. ... -|.|+||+|||.|.++..|..||+|+++|+.+.+ . .|++.++-++++.+
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 233343222111 122 2999999999999999899999999999998865 2 24666665555543
No 333
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.62 E-value=6.1e-05 Score=72.23 Aligned_cols=88 Identities=22% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCC-hHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGIG-RISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGtG-~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+|||||||.| ..+..|+. .|+. |+++|+++.+++ +++.|+.+..... -+.||+|++..
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~~-V~atDInp~Av~---------------~v~dDiF~P~~~~-Y~~~DLIYsir 97 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKVD-LVLTDIKPSHGG---------------IVRDDITSPRMEI-YRGAALIYSIR 97 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCCE-EEEECSSCSSTT---------------EECCCSSSCCHHH-HTTEEEEEEES
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCCe-EEEEECCccccc---------------eEEccCCCCcccc-cCCcCEEEEcC
Confidence 4679999999999 69988886 6665 999999987755 5777776633210 13799998866
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
. +.++...+.++++.. |.-++|.....
T Consensus 98 P-----P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 98 P-----PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp C-----CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred C-----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 3 234555666666544 56788876543
No 334
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.62 E-value=0.00012 Score=83.16 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-ccceec-cCCCCceeeEecCHHHHHHHHHcc-----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-REFVVP-THEPNKFYSLVQSPQQLKQLLMVG----- 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~~f~v~-~~~~~~~~~L~~Spql~kq~l~~~----- 414 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. ..|.-. |...+..++|....+.-.-.++..
T Consensus 163 p~ga~l~~aL~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 163 GDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcCCeEEEeecCcHHHHHHhcccccCc
Confidence 355788999999999999 57999999999997742 1121 112111 111135678864443222221221
Q ss_pred -CCC-cEEEEeeceecCCCC-----CC--CCcceecccccccCCC-HHHHHHHHHHHHHH---HhccCCCCce
Q psy8372 415 -SVD-RYFQIARCYRDESTR-----PD--RQPEFTQLDIELSFTT-RDDVMRLIEELLCY---CLNIPTRTFS 474 (883)
Q Consensus 415 -~~~-rvf~I~~~FR~E~~~-----~~--r~~EFt~le~e~~~~~-~~dvm~~~E~li~~---i~~~~~~~f~ 474 (883)
.+. |+|++++|||+|.+. .. |.-||+|.|++..... .++..+..++++.. +++.+.-||.
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~r 314 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYR 314 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence 122 999999999999632 23 6789999999875554 46666655555543 3334444444
No 335
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.62 E-value=5e-05 Score=86.90 Aligned_cols=116 Identities=15% Similarity=0.289 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--CC------ccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--GA------REFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--ga------~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
..-.+++.+|++.+++.+ .++||.||.||.|.... .. |. .-|.+... +..+||....+.-.-.+....
T Consensus 205 p~GarL~~aL~~f~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~ 281 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFL-VKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGR 281 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhcc
Confidence 456899999999999999 68999999999998752 11 21 23555422 456888644443322112111
Q ss_pred ------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHH--HHHHHHHHHHH
Q psy8372 416 ------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDD--VMRLIEELLCY 464 (883)
Q Consensus 416 ------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~d--vm~~~E~li~~ 464 (883)
+. |+|++++|||+|.... -|.-||+|.|.+. |...++ ..+..++|+..
T Consensus 282 i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~ 345 (484)
T 3lss_A 282 WFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITT 345 (484)
T ss_dssp EESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHH
T ss_pred ccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHH
Confidence 12 8999999999997421 3557999999975 555444 66666666644
No 336
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.59 E-value=4.1e-05 Score=91.62 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC------ccceeccCCCCceeeEecCH-HHHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA------REFVVPTHEPNKFYSLVQSP-QQLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga------~~f~v~~~~~~~~~~L~~Sp-ql~kq~l~~~ 414 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|. .-|.++ ..+..++|+.-. +-+-.+ ...
T Consensus 268 P~g~~l~~~l~~~~r~~~-~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d--~~~~~~~LrP~~~~~~~~~-~~~ 343 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQI-FNQ 343 (642)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEE--ETTEEEEECSSSHHHHHHH-HTT
T ss_pred CcHHHHHHHHHHHHHHHH-HHcCCEEEECCcCccHHHHhhcCccccccccceeee--cCCceEEecCCCCHHHHHH-HHh
Confidence 456889999999999999 68999999999997752 1232 124422 235678887322 222222 121
Q ss_pred ------CCC-cEEEEeeceecCCC--CCC--CCcceecccccccCCCHHHHHHH
Q psy8372 415 ------SVD-RYFQIARCYRDEST--RPD--RQPEFTQLDIELSFTTRDDVMRL 457 (883)
Q Consensus 415 ------~~~-rvf~I~~~FR~E~~--~~~--r~~EFt~le~e~~~~~~~dvm~~ 457 (883)
.+. |+||||+|||+|.+ ... |..||||.|++. |.+.+++.+.
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e 396 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDE 396 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHH
Confidence 222 99999999999998 344 889999999998 5554444333
No 337
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.57 E-value=6.3e-05 Score=86.08 Aligned_cols=117 Identities=13% Similarity=0.260 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC---CCCC-ccceec-cCCCCceeeEecCHHH-HHHHHHc-----
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT---PGGA-REFVVP-THEPNKFYSLVQSPQQ-LKQLLMV----- 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~---~~ga-~~f~v~-~~~~~~~~~L~~Spql-~kq~l~~----- 413 (883)
-.-.+++..|.+.+++.+ .+.||.||.||+|.... ..|. ..|.-. |...+..++|....+. +-.+ ..
T Consensus 190 p~ga~l~~aL~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~-~~~~~~s 267 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGM-HANEILD 267 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHT-TTTEEEE
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHH-HHhCccC
Confidence 355788999999999999 68999999999998752 1232 113111 1112456788744332 2221 11
Q ss_pred -cCCC-cEEEEeeceecCCCCCC-------CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 414 -GSVD-RYFQIARCYRDESTRPD-------RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 414 -~~~~-rvf~I~~~FR~E~~~~~-------r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
..+. |+|++++|||+|.+... |.-||+|.|+. .|.+.++..+..++++..
T Consensus 268 ~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 268 GKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRN 326 (455)
T ss_dssp TTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHH
T ss_pred chhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHH
Confidence 1222 99999999999987432 67899999998 466656666666666643
No 338
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.57 E-value=0.00019 Score=76.97 Aligned_cols=129 Identities=10% Similarity=-0.025 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh----C--CCeEEEEeCCHH--------------------------HHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSSK--------------------------FIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~----g--~~~V~gvD~S~~--------------------------~le~A~~~~~~~ 180 (883)
...++|||+||..|..+..++.. + ..+|+++|..+. .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 34569999999999988776542 1 236999996421 467788888776
Q ss_pred cC--CCccEEEccCCCCCCCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCccc
Q psy8372 181 CD--KLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSS 258 (883)
Q Consensus 181 ~~--~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~ 258 (883)
+. .+++++.+++.+..+...+++||+|+.-.-. . +.....+..+...|+|||++++.+...
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD~~~------------- 247 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDDYMM------------- 247 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESSCTT-------------
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcCCCC-------------
Confidence 53 6789999998775444334689999987642 1 225678999999999999998877421
Q ss_pred ccccchhhhhhhhhcccccc
Q psy8372 259 VVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 259 ~~~s~~~~~~l~~~aGf~vv 278 (883)
.......+.+++++.|+...
T Consensus 248 ~~G~~~Av~Ef~~~~~i~~~ 267 (282)
T 2wk1_A 248 CPPCKDAVDEYRAKFDIADE 267 (282)
T ss_dssp CHHHHHHHHHHHHHTTCCSC
T ss_pred CHHHHHHHHHHHHhcCCceE
Confidence 01123466666666665543
No 339
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00012 Score=85.11 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CCCCc-c-----ceeccCCC---CceeeEe-cCHH----H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PGGAR-E-----FVVPTHEP---NKFYSLV-QSPQ----Q 406 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~ga~-~-----f~v~~~~~---~~~~~L~-~Spq----l 406 (883)
-.-.+++..|.+.+|+.+ .+.||.||.||+|.... ..|.- . |.+..... +..++|+ +|=. +
T Consensus 58 P~G~~i~~~L~~~~~~~~-~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~ 136 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEI-KKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPA 136 (519)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHH
Confidence 344678999999999999 68999999999997642 22321 1 33322111 2357885 3322 3
Q ss_pred HHHHHHc-cCCC-cEEEEeeceecCCCC-CC--CCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 407 LKQLLMV-GSVD-RYFQIARCYRDESTR-PD--RQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 407 ~kq~l~~-~~~~-rvf~I~~~FR~E~~~-~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
|++.+.. ..+. |+|++++|||.|... .. |..||+|.|.+..|.+.++..+.+++++..
T Consensus 137 ~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 137 YAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp HHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 4443211 1233 999999999999443 44 778999999999999988887777766543
No 340
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.56 E-value=0.00016 Score=80.36 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccC------CCccEEEccCCCCCCCcCCCCc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCD------KLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~F 204 (883)
..++.+|||++||.|.=+..++..+.. .|+++|+|+.-++..++++...+. .++.....|...+.... .+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~-~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE-GDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS-TTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc-cccC
Confidence 367889999999999988888877654 799999999999999888765432 34456666665543211 3589
Q ss_pred cEEEEc----c----ccc-------ccChHH-------HHHHHHHHHHHhccCcEEEEEecccC
Q psy8372 205 DVIWIQ----W----VLM-------FILDED-------IIKFLNLCKQILNKNGIIIIKDNVAS 246 (883)
Q Consensus 205 DlVvs~----~----vL~-------hl~ded-------~~~~l~~~~r~LKPGG~lvi~~~~~~ 246 (883)
|.|++. . ++. ....++ ..++|..+.++|||||+|+-++++-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 999952 2 111 111111 24788899999999999999987643
No 341
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.54 E-value=0.00012 Score=84.35 Aligned_cols=130 Identities=12% Similarity=0.249 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC--------CC-CCccceeccCC-------CCceeeEecCHHH-H
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT--------PG-GAREFVVPTHE-------PNKFYSLVQSPQQ-L 407 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~--------~~-ga~~f~v~~~~-------~~~~~~L~~Spql-~ 407 (883)
..-.+++..|++.+++.+ .+.||.||.||.|.... +. +...|.+.... .+..+||....+. +
T Consensus 198 p~GarL~raL~~f~~d~~-~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l 276 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTL-GSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPI 276 (522)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHH
Confidence 456789999999999999 57999999999997641 11 11235554221 1346788744433 2
Q ss_pred HHHHHcc------CCC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHH--HHHHHHHHHHH---HHhcc
Q psy8372 408 KQLLMVG------SVD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRD--DVMRLIEELLC---YCLNI 468 (883)
Q Consensus 408 kq~l~~~------~~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~--dvm~~~E~li~---~i~~~ 468 (883)
-.+ ... .+. |+|++++|||+|.+.. -|.-||+|.|.+. |..-+ +..+..++|+. .+++.
T Consensus 277 ~~l-~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~e~il~~ 354 (522)
T 3vbb_A 277 AAL-HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTAEEFYQS 354 (522)
T ss_dssp HTT-STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 122 8999999999998632 3558999999975 44432 25555555554 34444
Q ss_pred CCCCceeee
Q psy8372 469 PTRTFSRIS 477 (883)
Q Consensus 469 ~~~~f~rit 477 (883)
+.-||..+.
T Consensus 355 LGLpyrvv~ 363 (522)
T 3vbb_A 355 LGIPYHIVN 363 (522)
T ss_dssp TTCCEEEEE
T ss_pred cCCceEEEE
Confidence 555555443
No 342
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.53 E-value=0.00014 Score=83.21 Aligned_cols=128 Identities=13% Similarity=0.245 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-C--CC------CccceeccCCCCceeeEecCHHHHHHHHHccC
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-P--GG------AREFVVPTHEPNKFYSLVQSPQQLKQLLMVGS 415 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~--~g------a~~f~v~~~~~~~~~~L~~Spql~kq~l~~~~ 415 (883)
-.-.+++..|++.+++.+ .+.||.||.||.|.... - .| ...|.+... +..+||.-..+.-.-.++...
T Consensus 182 p~GarL~~aL~~~~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~e 258 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFL-SSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGE 258 (485)
T ss_dssp THHHHHHHHHHHHHHHHH-HTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHHHHHhcc
Confidence 466789999999999999 68999999999998752 1 12 123555321 356777544343222122221
Q ss_pred --------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCHHHHHHHHHHHHHH---HhccCCCCceee
Q psy8372 416 --------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTRDDVMRLIEELLCY---CLNIPTRTFSRI 476 (883)
Q Consensus 416 --------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~~dvm~~~E~li~~---i~~~~~~~f~ri 476 (883)
+. |+|++++|||+|.... -|.-||+|.|.+. |...++..+..++|+.. +++.+.-||..+
T Consensus 259 i~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv 337 (485)
T 3qne_A 259 WFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVV 337 (485)
T ss_dssp EESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 22 7999999999997541 3557999999987 66666666666666543 344444455544
No 343
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.51 E-value=0.00032 Score=80.88 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC----CC-----CC-ccceeccCCCCceeeEecCHHH-HHHHHHc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT----PG-----GA-REFVVPTHEPNKFYSLVQSPQQ-LKQLLMV 413 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~----~~-----ga-~~f~v~~~~~~~~~~L~~Spql-~kq~l~~ 413 (883)
..-.++..+|.+.+++.+ .+.||.||.||.|.... +| +. .-|.+... .+..+||.-..+. +-.+ ..
T Consensus 216 p~GarL~~aL~~~~~d~~-~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l-~~ 292 (501)
T 1wle_A 216 GAGALLQHGLVNFTLNKL-IHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGY-FM 292 (501)
T ss_dssp THHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHH-HT
T ss_pred ChHHHHHHHHHHHHHHHH-HHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHH-Hh
Confidence 455889999999999999 57999999999998742 11 11 23555322 1356788755553 2222 22
Q ss_pred c------CCC-cEEEEeeceecCCC------CCCCCcceecccccccCCCH-HHHHHHHHHHHHH
Q psy8372 414 G------SVD-RYFQIARCYRDEST------RPDRQPEFTQLDIELSFTTR-DDVMRLIEELLCY 464 (883)
Q Consensus 414 ~------~~~-rvf~I~~~FR~E~~------~~~r~~EFt~le~e~~~~~~-~dvm~~~E~li~~ 464 (883)
. .+. |++++++|||+|.. .--|.-||+|.|.+..-... ++..+..++|+..
T Consensus 293 ~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 293 DHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp TEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred hccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 1 122 99999999999976 12355899999998855554 6777777777754
No 344
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.51 E-value=0.00025 Score=82.59 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CC--C------CccceeccCCCCceeeEecCHH-HHHHHHHcc
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PG--G------AREFVVPTHEPNKFYSLVQSPQ-QLKQLLMVG 414 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~--g------a~~f~v~~~~~~~~~~L~~Spq-l~kq~l~~~ 414 (883)
..-.+++..|++.+++.+ .+.||.||.||.|.... -. | ..-|.+. +..+||....+ -+-.+ ...
T Consensus 272 p~Ga~l~~aL~~~~~~~~-~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l-~~~ 345 (536)
T 3err_A 272 GDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNAL-HSG 345 (536)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHH-TTT
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHH-Hhc
Confidence 456889999999999999 57999999999997742 11 1 1225543 24578864433 33332 221
Q ss_pred C------CC-cEEEEeeceecCCCCC-------CCCcceecccccccCCCH--HHHHHHHHHHHHH---HhccCCCCcee
Q psy8372 415 S------VD-RYFQIARCYRDESTRP-------DRQPEFTQLDIELSFTTR--DDVMRLIEELLCY---CLNIPTRTFSR 475 (883)
Q Consensus 415 ~------~~-rvf~I~~~FR~E~~~~-------~r~~EFt~le~e~~~~~~--~dvm~~~E~li~~---i~~~~~~~f~r 475 (883)
. +. |+|++++|||+|.... -|.-||+|.|.+. |..- ++..+..++++.. +++.+.-||..
T Consensus 346 ~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrv 424 (536)
T 3err_A 346 EILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENAEEILRLLELPYRL 424 (536)
T ss_dssp CEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1 22 8999999999997421 3558999999986 5443 4777777777654 33344444443
Q ss_pred e
Q psy8372 476 I 476 (883)
Q Consensus 476 i 476 (883)
+
T Consensus 425 v 425 (536)
T 3err_A 425 V 425 (536)
T ss_dssp E
T ss_pred E
Confidence 3
No 345
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.48 E-value=9.8e-05 Score=78.79 Aligned_cols=108 Identities=17% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+|||+||++|.++..++.. +...|.|+|++..+...... .......+..+..++...... ++.+|+|+|.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~--~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMP--TEPSDTLLCD 154 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecC--CCCcCEEeec
Confidence 357889999999999999977764 44478999997543111000 000001111222222211111 3589999997
Q ss_pred ccccccCh---HH--HHHHHHHHHHHhccC-cEEEEEecc
Q psy8372 211 WVLMFILD---ED--IIKFLNLCKQILNKN-GIIIIKDNV 244 (883)
Q Consensus 211 ~vL~hl~d---ed--~~~~l~~~~r~LKPG-G~lvi~~~~ 244 (883)
.+.. ... +. ...++.-+.++|+|| |.|++..+.
T Consensus 155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 6655 221 11 234577788999999 999998754
No 346
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.35 E-value=0.00027 Score=82.12 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.7
Q ss_pred CCC-cEEEEeeceecC-CCCCC--CCcceecccccccCCCHHHHHHHHHHHHH
Q psy8372 415 SVD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELSFTTRDDVMRLIEELLC 463 (883)
Q Consensus 415 ~~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~~~~~~dvm~~~E~li~ 463 (883)
.+. |+|||++|||+| ..+.. |..||+|.|+| .|.+.++..+..++++.
T Consensus 207 ~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~ 258 (505)
T 1ati_A 207 KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVE 258 (505)
T ss_dssp CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHH
T ss_pred CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHH
Confidence 444 999999999999 55555 88999999999 68886666555555554
No 347
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.35 E-value=0.00045 Score=76.43 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
.+|++|||+||++|.++..++.++. .|++||+.+ |-... . ....+++++.|+..+.+.. +.+|+|+|.++
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l----~--~~~~V~~~~~d~~~~~~~~--~~~D~vvsDm~ 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSL----M--DTGQVTWLREDGFKFRPTR--SNISWMVCDMV 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHH----H--TTTCEEEECSCTTTCCCCS--SCEEEEEECCS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhh----c--cCCCeEEEeCccccccCCC--CCcCEEEEcCC
Confidence 5789999999999999998888876 599999864 21111 1 2346688999988877654 68999999876
Q ss_pred ccccChHHHHHHHHHHHHHhccC
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKN 235 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPG 235 (883)
.. +...+..+.++|..|
T Consensus 280 ~~------p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 EK------PAKVAALMAQWLVNG 296 (375)
T ss_dssp SC------HHHHHHHHHHHHHTT
T ss_pred CC------hHHhHHHHHHHHhcc
Confidence 53 345556666666654
No 348
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.34 E-value=0.00019 Score=76.85 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHHHH--HHHhcCCCeEEEcCCeeccCCC-CCCccceeccCCCCceeeEe--cCHHHHHHHHHcc-C-C-CcEEEEeec
Q psy8372 354 FLMRTR--EFLATHRDFVEVETPTLFKRTP-GGAREFVVPTHEPNKFYSLV--QSPQQLKQLLMVG-S-V-DRYFQIARC 425 (883)
Q Consensus 354 i~~~iR--~f~~~~~gF~EV~TP~l~~~~~-~ga~~f~v~~~~~~~~~~L~--~Spql~kq~l~~~-~-~-~rvf~I~~~ 425 (883)
|.+.+| +.| .+.||.||.||++..... .. ..|. + ..|..+.|+ -.|.+.... +.. . . -|.|++|+|
T Consensus 6 le~~~r~~~~~-~~~Gy~eI~tP~le~~~l~~~-d~f~-d--~~g~~l~LRpd~T~~~a~~~-~~~~~~~p~R~~y~g~v 79 (275)
T 1usy_A 6 FEKVFSFYSKA-TKKGFSPFFVPALEKAEEPAG-NFFL-D--RKGNLFSIREDFTKTVLNHR-KRYSPDSQIKVWYADFV 79 (275)
T ss_dssp HHHHHHHHHHH-HHTTCEECCCCSEEECSSCCS-SCEE-E--TTSCEEEECCCHHHHHHHHH-TTCTTCCCEEEECCEEE
T ss_pred HHHHHHHHHHH-HHCCCEEecCccccchhhhcc-cccC-C--CCCCEEEeCCcChHHHHHHH-hhcCCCCceEEEEeceE
Confidence 445555 888 579999999999976532 22 2332 2 246778887 233344332 222 2 2 399999999
Q ss_pred eecCCCCCCCCcceecccccccCCC----HHHHHHHHHHHHH
Q psy8372 426 YRDESTRPDRQPEFTQLDIELSFTT----RDDVMRLIEELLC 463 (883)
Q Consensus 426 FR~E~~~~~r~~EFt~le~e~~~~~----~~dvm~~~E~li~ 463 (883)
||.|.+.. .||+|+++|+...+ -.+++.++-++++
T Consensus 80 fR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~ 118 (275)
T 1usy_A 80 YRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESAS 118 (275)
T ss_dssp EEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHH
Confidence 99998877 79999999998875 2344444444443
No 349
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.32 E-value=0.00029 Score=78.26 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc--------CCCccEEEccCCCCCCC--cCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC--------DKLDKCYNVGIQDFKPE--DLNI 202 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~--------~~~~~~~~~d~~~~~~~--~~~~ 202 (883)
.+..+||=||.|.|..+..+++....+|+.||+++.+++.|++.+.... ..+++.+..|...+... ...+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3457999999999999998887666689999999999999999764321 12346677776554321 1135
Q ss_pred CccEEEEcccc-------cccCh-HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVL-------MFILD-EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL-------~hl~d-ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+||+|+....- ..... .-...+++.++++|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 79999985321 11111 113578899999999999998865
No 350
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.29 E-value=0.00015 Score=83.00 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=40.6
Q ss_pred ccccccCCcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 11 HTCGALRLSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 11 ~~~~~~~~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
..+.++ .+++|++|+|+|||+++|+ .+|++|||++|.+||++++++
T Consensus 20 ~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~ 69 (456)
T 3m4p_A 20 CNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE 69 (456)
T ss_dssp EECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT
T ss_pred EEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc
Confidence 457777 6889999999999999998 579999999999999997644
No 351
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.06 E-value=0.00022 Score=82.55 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHH-HHhcCCCeEEEcCCeeccCC---CCC-----Cc-cceecc---CC------------------
Q psy8372 345 QHNLRFRSKFLMRTRE-FLATHRDFVEVETPTLFKRT---PGG-----AR-EFVVPT---HE------------------ 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~-f~~~~~gF~EV~TP~l~~~~---~~g-----a~-~f~v~~---~~------------------ 393 (883)
-.-.+++..|.+.+++ ++ .+.||.||.||+|.+.. ..| +. -|.+.. +.
T Consensus 228 P~G~~L~~~L~~~~~~e~~-~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELL-EPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTH-HHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred chHHHHHHHHHHHHHHHHH-HHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 4456788999999996 57 57899999999997741 112 11 244421 01
Q ss_pred --------CCceeeEecCHH--H---HHHHHHc-cCCC-cEEE-EeeceecCCCC----CCCCcceecccccccCCCHHH
Q psy8372 394 --------PNKFYSLVQSPQ--Q---LKQLLMV-GSVD-RYFQ-IARCYRDESTR----PDRQPEFTQLDIELSFTTRDD 453 (883)
Q Consensus 394 --------~~~~~~L~~Spq--l---~kq~l~~-~~~~-rvf~-I~~~FR~E~~~----~~r~~EFt~le~e~~~~~~~d 453 (883)
.+..++|+...+ + |+..... ..+. |+|| |++|||+| ++ -.|.-||+|.|++. |.+.++
T Consensus 307 ~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 TKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp HHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred ccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 245678863322 1 2221111 1122 8999 99999999 54 25779999999998 778888
Q ss_pred HHHHHHHHH
Q psy8372 454 VMRLIEELL 462 (883)
Q Consensus 454 vm~~~E~li 462 (883)
..+..++++
T Consensus 385 s~ee~ee~i 393 (522)
T 2cja_A 385 VLKCAEELH 393 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777777
No 352
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=96.98 E-value=0.00051 Score=71.78 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=65.4
Q ss_pred HHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhc----cCCCccEEEc-cCCCC
Q psy8372 122 LSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKD----CDKLDKCYNV-GIQDF 195 (883)
Q Consensus 122 L~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~----~~~~~~~~~~-d~~~~ 195 (883)
|.++.... ...++++|||+||+.|.++..++.. +...|.|.++.... . ..+.. +...+.+.++ |+.+.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccCCccCC
Confidence 34443333 4578999999999999999866654 12234555544321 0 00000 1112233335 87764
Q ss_pred CCCcCCCCccEEEEcccccccCh---HHH--HHHHHHHHHHhccCc-EEEEEecc
Q psy8372 196 KPEDLNIKYDVIWIQWVLMFILD---EDI--IKFLNLCKQILNKNG-IIIIKDNV 244 (883)
Q Consensus 196 ~~~~~~~~FDlVvs~~vL~hl~d---ed~--~~~l~~~~r~LKPGG-~lvi~~~~ 244 (883)
. +.++|+|+|-++-. ... +.. ..+|.-+.++|+||| .|++-.+.
T Consensus 136 ~----~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 136 P----SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp C----CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C----CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3 24799999976443 221 111 125667779999999 89998754
No 353
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.97 E-value=0.0057 Score=71.42 Aligned_cols=126 Identities=16% Similarity=0.022 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCeEEEEcCCCChHHHHHHHh----C----------CCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 115 IQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK----H----------FDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 115 ~~~~~~lL~~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~----g----------~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.+...+++..++. +.++.+|+|-+||+|.+...+... . ...++|+|+++.+...|+.+..-+
T Consensus 202 P~~Vv~lmv~l~~----p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh 277 (530)
T 3ufb_A 202 PRPVVRFMVEVMD----PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH 277 (530)
T ss_dssp CHHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhc----cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc
Confidence 4444455555542 246779999999999998765432 1 125999999999999999887655
Q ss_pred cCCCccEEEccCCCCCCCc--CCCCccEEEEcccccccCh--------------HHHHHHHHHHHHHhc-------cCcE
Q psy8372 181 CDKLDKCYNVGIQDFKPED--LNIKYDVIWIQWVLMFILD--------------EDIIKFLNLCKQILN-------KNGI 237 (883)
Q Consensus 181 ~~~~~~~~~~d~~~~~~~~--~~~~FDlVvs~~vL~hl~d--------------ed~~~~l~~~~r~LK-------PGG~ 237 (883)
+.....+...|....+... ...+||+|+++.-+.--.. +.-..+++.+.+.|| |||+
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr 357 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR 357 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence 5444456666665443211 1247999999886631100 112357888888887 6999
Q ss_pred EEEEecc
Q psy8372 238 IIIKDNV 244 (883)
Q Consensus 238 lvi~~~~ 244 (883)
+.+..+.
T Consensus 358 ~avVlP~ 364 (530)
T 3ufb_A 358 AAVVVPN 364 (530)
T ss_dssp EEEEEEH
T ss_pred EEEEecc
Confidence 9998853
No 354
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=96.96 E-value=0.00032 Score=79.86 Aligned_cols=42 Identities=31% Similarity=0.563 Sum_probs=36.5
Q ss_pred ccccCCcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecC
Q psy8372 13 CGALRLSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPN 55 (883)
Q Consensus 13 ~~~~~~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~ 55 (883)
+.++ .+++|++|+|+|||+++|+ .+|++|||++|.+||++++
T Consensus 3 i~~~-~~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~ 48 (435)
T 2xgt_A 3 IRDL-VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMD 48 (435)
T ss_dssp GGGG-GGGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEG
T ss_pred hhhh-hhcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECC
Confidence 3455 4688999999999999998 4899999999999999963
No 355
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.96 E-value=0.003 Score=67.14 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEEc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs~ 210 (883)
.++++|||+||++|.++.+++.. ++..|+|+|+...--+.- ........+.+.+... |+..+.+ .++|+|+|.
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~----~~~D~ivcD 167 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS----ECCDTLLCD 167 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC----CCCSEEEEC
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC----CCCCEEEEE
Confidence 56779999999999999866554 445899999875411000 0000111233556665 6655554 369999997
Q ss_pred ccccccChHH-----HHHHHHHHHHHhccC-cEEEEEeccc
Q psy8372 211 WVLMFILDED-----IIKFLNLCKQILNKN-GIIIIKDNVA 245 (883)
Q Consensus 211 ~vL~hl~ded-----~~~~l~~~~r~LKPG-G~lvi~~~~~ 245 (883)
.. +--+... -..+|.-+.++|++| |-+++-.++.
T Consensus 168 ig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 168 IG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred Cc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 65 4443311 223677778999999 8999877543
No 356
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.83 E-value=0.0015 Score=69.56 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~ 195 (883)
.+++.+||.+||.|..+..++..+ ..|+|+|.++.+++.|++ +.. .++.+++.++.++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l 78 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL 78 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH
Confidence 467899999999999999998873 479999999999999988 542 3455666665544
No 357
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.83 E-value=0.00037 Score=94.96 Aligned_cols=141 Identities=17% Similarity=0.097 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g------~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDl 206 (883)
.+..+||+||.|+|..+..++... +.+++.+|+|+...+.|++++... .++.-..|..+.... ..++||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~-~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPG-SLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC------CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccC-CCCceeE
Confidence 356799999999998766555431 237899999998888888776532 001111122221010 1357999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCC----cccccCC--cccccccchhhhhhhhhccccccc
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV----KNEYDDE--DSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~----~~~~~~~--~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
|++.+++|-.++ +...+.+++++|||||++++.+...... ...+... ......+..+|..++..+||..+.
T Consensus 1315 via~~vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A 1315 LVCNCALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp EEEECC----------------------CCEEEEEEC--------------------------CTTTTSSTTTTEEEEE
T ss_pred EEEccccccccc--HHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceee
Confidence 999999987654 7789999999999999999876432100 0001100 112234567899999999997764
No 358
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.80 E-value=0.0021 Score=69.32 Aligned_cols=47 Identities=21% Similarity=0.075 Sum_probs=41.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||++||+|.++..++..|. .++|+|+++.+++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 4678999999999999987777665 5999999999999999998764
No 359
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=96.69 E-value=0.0076 Score=62.10 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cCCCCCCCcCCCCccEEEE
Q psy8372 132 DPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GIQDFKPEDLNIKYDVIWI 209 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~FDlVvs 209 (883)
..++++|||+||++|.++.+++.. +...|+|+|+-..--+.- ......+.+.++|.+. |+....+ .++|.|+|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~~----~~~Dtllc 150 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLPP----EKCDTLLC 150 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCCC----CCCSEEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecCC----ccccEEEE
Confidence 357789999999999999866655 445899999875321000 0011123456788887 7755544 36999999
Q ss_pred cccccccCh--H--HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 210 QWVLMFILD--E--DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 210 ~~vL~hl~d--e--d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
...=..-.. + .-..+|.-+.++|++ |.+++-..+.
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 654322111 1 123367777899998 8888877544
No 360
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.49 E-value=0.0042 Score=67.74 Aligned_cols=130 Identities=15% Similarity=0.043 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-CCCCc--------cceeccCC----------------------
Q psy8372 345 QHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRT-PGGAR--------EFVVPTHE---------------------- 393 (883)
Q Consensus 345 ~~~l~~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-~~ga~--------~f~v~~~~---------------------- 393 (883)
..-.+++..|.+.+|+ . .+.||.||.||.|.... -++++ -|.+....
T Consensus 61 g~~a~L~~aLe~~~~~-~-~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~ 138 (346)
T 3mf2_A 61 ALYESIVERLAALITS-H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTS 138 (346)
T ss_dssp HHHHHHHHHHHHHHHH-T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGG
T ss_pred chHHHHHHHHHHHHHh-h-HhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccc
Confidence 3446788899999999 7 57899999999997742 12221 13332211
Q ss_pred -CCceeeEecCHH-----HHHHH-HHccCCCcEEEEeeceecCCC-CCCCCcceecccccccCCCHHHHHHHHHHHHHH-
Q psy8372 394 -PNKFYSLVQSPQ-----QLKQL-LMVGSVDRYFQIARCYRDEST-RPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY- 464 (883)
Q Consensus 394 -~~~~~~L~~Spq-----l~kq~-l~~~~~~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~~~~dvm~~~E~li~~- 464 (883)
.+..+||....+ +|+.. .+...=-|+-.+++|||.|.+ +-.|.-+|+|.|+-. |.+.+++.+..|+++..
T Consensus 139 l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 139 LSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 124578863332 33421 111111266679999999997 456779999999866 67888888888888865
Q ss_pred --HhccCCCCceeee
Q psy8372 465 --CLNIPTRTFSRIS 477 (883)
Q Consensus 465 --i~~~~~~~f~rit 477 (883)
+++.+.-||+.+.
T Consensus 218 e~il~~LgLpyrv~~ 232 (346)
T 3mf2_A 218 QAIARDLGLTFRVDY 232 (346)
T ss_dssp HHHHHHTTCCCEEEE
T ss_pred HHHHHHCCCCEEEEE
Confidence 4455666777664
No 361
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.49 E-value=0.0011 Score=79.52 Aligned_cols=53 Identities=32% Similarity=0.321 Sum_probs=36.6
Q ss_pred CceeeEe---cCHH--HHHHHHHccC--CC-cEEEEeeceecC-CCCCC--CCcceeccccccc
Q psy8372 395 NKFYSLV---QSPQ--QLKQLLMVGS--VD-RYFQIARCYRDE-STRPD--RQPEFTQLDIELS 447 (883)
Q Consensus 395 ~~~~~L~---~Spq--l~kq~l~~~~--~~-rvf~I~~~FR~E-~~~~~--r~~EFt~le~e~~ 447 (883)
+...||+ ..+. .|+.++.... +. |+||||++||+| ..+.. |-.||+|.|+|.-
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEE
T ss_pred CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEE
Confidence 3556776 2222 2566543322 32 999999999999 55666 7799999999983
No 362
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=96.35 E-value=0.00096 Score=77.54 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=41.1
Q ss_pred cccccccccC---------CcCCCCEEEEEEeeeeech----hhhhhhccccCcEEEEecCCC
Q psy8372 8 TRSHTCGALR---------LSDVDKTVTLCGWLQNQRV----DMFALLRDAYGQVQVIVPNHQ 57 (883)
Q Consensus 8 ~r~~~~~~~~---------~~~~g~~v~l~gWv~~~R~----~~f~~lRD~~G~~qvv~~~~~ 57 (883)
.|||.+.++. ....|++|+|+|||.++|+ .+|++|||++|.+||++.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~ 94 (521)
T 3bju_A 32 HVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRN 94 (521)
T ss_dssp CCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGG
T ss_pred cCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCc
Confidence 4777777763 2346899999999999997 579999999999999997654
No 363
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=96.34 E-value=0.043 Score=60.16 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhcc---------------------CCCccEEEcc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDC---------------------DKLDKCYNVG 191 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~---------------------~~~~~~~~~d 191 (883)
+...|+.+|||.......+...+.. .++-||. |.+++.-++.+.... .....++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568999999999999888776434 5667776 788777777665431 2455778888
Q ss_pred CCCCCC-------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 192 IQDFKP-------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 192 ~~~~~~-------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+.+... ....+...++++-.++++++.+...++++.+.+.. |+|.+++.+...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 876311 11124678999999999999988999999999877 788877666543
No 364
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0034 Score=72.52 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=50.0
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||+|++.-+.+. ++.|+...+|.++..+
T Consensus 194 vLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 194 TLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp ECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred ccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5666666643221 11 189999999998764 556679999999998886 6999999999998765
No 365
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.11 E-value=0.0024 Score=74.36 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 7999999999999864
No 366
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.09 E-value=0.0025 Score=74.30 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 7999999999999864
No 367
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.06 E-value=0.0026 Score=74.21 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 6999999999999865
No 368
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.00 E-value=0.0029 Score=74.07 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.6
Q ss_pred eEe--cCHHHHHHHHHcc--CC--CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 399 SLV--QSPQQLKQLLMVG--SV--DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 399 ~L~--~Spql~kq~l~~~--~~--~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
.|+ .+|.+..++.... +. -|+|+||+|||.+.. +..|.+||.|++.-+.+. |+.|+...+|.++..+
T Consensus 201 VLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 201 TLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 455 5665655543221 12 289999999998765 666779999999988885 6999999999999865
No 369
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.016 Score=65.98 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEcCCeeccCCCCCC-ccceeccCCCCceeeEec--CHHHH---HHHHHcc--CCC
Q psy8372 347 NLRFRSKFLMRTREFLATHRD-FVEVETPTLFKRTPGGA-REFVVPTHEPNKFYSLVQ--SPQQL---KQLLMVG--SVD 417 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f~~~~~g-F~EV~TP~l~~~~~~ga-~~f~v~~~~~~~~~~L~~--Spql~---kq~l~~~--~~~ 417 (883)
=..+|+.|.+..|..+..++| +.||.||+.......|. ..|. +||+. +|-.+ +..+-.. .+.
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~---------~~LRPeTaqg~~~nfk~~~~s~r~~LP 173 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR---------GGLRENLLHGALEHYVNCLDLVNKRLP 173 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT---------TB-CSCSHHHHHHHTTTTTGGGTTBSS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc---------ceECCCCChhHHHHHhhhhhhccccCC
Confidence 357889999855555534355 78899999543322332 2232 57763 44332 2221111 222
Q ss_pred -cEEEEeeceecCC--CCC----CCCcceecccccccCCCHHHHHHHHHHHHHHH
Q psy8372 418 -RYFQIARCYRDES--TRP----DRQPEFTQLDIELSFTTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 -rvf~I~~~FR~E~--~~~----~r~~EFt~le~e~~~~~~~dvm~~~E~li~~i 465 (883)
|+.|||+|||+|. +.+ -|--||||.|++. |.+.++..+..+.++...
T Consensus 174 ~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 174 YGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 7999999999995 333 3448999999985 777666666666655443
No 370
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=95.91 E-value=0.012 Score=68.09 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=50.4
Q ss_pred eeEecCH--HHHHHHHHc--c-CC-CcEEEEeeceecCCC-CCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 398 YSLVQSP--QQLKQLLMV--G-SV-DRYFQIARCYRDEST-RPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 398 ~~L~~Sp--ql~kq~l~~--~-~~-~rvf~I~~~FR~E~~-~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
..|++|- .+..++... . .. -|+|+||+|||.|.. +..|.+||+|++..+.+. ++.+++.++|.++..+
T Consensus 181 svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 181 LTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred cccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577554 444553221 1 11 289999999998776 666779999999999884 6999999999988765
No 371
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=95.70 E-value=0.015 Score=65.73 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=35.7
Q ss_pred eeEe--cCHHHHHHHHHccCCCcEEEEeeceecCCCCCCCCcceecccc
Q psy8372 398 YSLV--QSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFTQLDI 444 (883)
Q Consensus 398 ~~L~--~Spql~kq~l~~~~~~rvf~I~~~FR~E~~~~~r~~EFt~le~ 444 (883)
.-|+ +||-+.+-+ ..+..|+|++|.|||.+..++.|.|+|.|+|-
T Consensus 114 ~vLRThts~~~~~~l--~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~eg 160 (415)
T 3cmq_A 114 HMLRAHTSAHQWDLL--HAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEA 160 (415)
T ss_dssp EEECSSGGGGHHHHH--HTTCSEEEEEEEEECCCCCBTTBCSEEEEEEE
T ss_pred eEEcCCCcHHHHHHH--HHCCCCEEEeeeEEeccchhhhhhHHhcCCCc
Confidence 3465 667555443 45567999999999999999999999999993
No 372
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.64 E-value=0.011 Score=67.71 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCeEEEcCCeeccCC-CCCC--------ccceec-------------c--CCCCceeeEe
Q psy8372 347 NLRFRSKFLMRTREF-LATHRDFVEVETPTLFKRT-PGGA--------REFVVP-------------T--HEPNKFYSLV 401 (883)
Q Consensus 347 ~l~~rs~i~~~iR~f-~~~~~gF~EV~TP~l~~~~-~~ga--------~~f~v~-------------~--~~~~~~~~L~ 401 (883)
=..++..|.+.+++. +..+.|+.||.||+|.+.. -.+. ..+.-. . ...+..+||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 457889999988876 3236899999999997653 1211 111100 0 0012356787
Q ss_pred --cCHHH---HHHHHHcc--CCC-cEEEEeecee---cCCCCC---CCCcceecccccccCCCHHHHHHHHHHHHHH
Q psy8372 402 --QSPQQ---LKQLLMVG--SVD-RYFQIARCYR---DESTRP---DRQPEFTQLDIELSFTTRDDVMRLIEELLCY 464 (883)
Q Consensus 402 --~Spql---~kq~l~~~--~~~-rvf~I~~~FR---~E~~~~---~r~~EFt~le~e~~~~~~~dvm~~~E~li~~ 464 (883)
++|.. |+..+-.. .+. +++|||+||| ||-+.. -|..||+|.|++. |.+.++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHH
Confidence 44432 45543222 344 9999999999 696531 2448999999996 77877777666665544
No 373
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=95.61 E-value=0.026 Score=60.89 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----HhCCC---eEEEEeCCH--------H-HHHHHH---HHHhhccCCC--ccEEEccC
Q psy8372 134 GKTRVLDVGAGIGRISKYLL----AKHFD---KIDLLEQSS--------K-FIEQAK---EEILKDCDKL--DKCYNVGI 192 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~----~~g~~---~V~gvD~S~--------~-~le~A~---~~~~~~~~~~--~~~~~~d~ 192 (883)
+.-+|||+|-|+|.++...+ +.+.. +++.+|..+ . ..+.++ .......... ..+..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34589999999999764332 22333 456666421 1 111121 1111111122 24566676
Q ss_pred CCCCCCcCCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhh
Q psy8372 193 QDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFS 271 (883)
Q Consensus 193 ~~~~~~~~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 271 (883)
.+..+.-.+..||+|+.-.--..-.++- -..+++.++++++|||+|+--+ ....++..|.
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-------------------aag~VRR~L~ 236 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-------------------SSLSVRKSLL 236 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-------------------CCHHHHHHHH
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-------------------CcHHHHHHHH
Confidence 5533221124799999854211111110 1479999999999999986433 2457789999
Q ss_pred hcccccccc
Q psy8372 272 KANLKCVKS 280 (883)
Q Consensus 272 ~aGf~vv~~ 280 (883)
++||++.+.
T Consensus 237 ~aGF~V~k~ 245 (308)
T 3vyw_A 237 TLGFKVGSS 245 (308)
T ss_dssp HTTCEEEEE
T ss_pred HCCCEEEec
Confidence 999998654
No 374
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.60 E-value=0.042 Score=58.37 Aligned_cols=111 Identities=18% Similarity=0.061 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEcC------CCChHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEE
Q psy8372 118 SNQFLSSLYCQKKSDPGKTRVLDVGA------GIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189 (883)
Q Consensus 118 ~~~lL~~l~~~~~~~~~~~rVLDVGC------GtG~~~~~l~~~g~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~ 189 (883)
..++...+-......+.+++|||+|| .+|... +...+.. .|+++|+.+-. .... .+++
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~-----------sda~-~~Iq 158 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV-----------SDAD-STLI 158 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB-----------CSSS-EEEE
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc-----------cCCC-eEEE
Confidence 34444444333344577999999996 667642 2223443 79999987532 1111 4588
Q ss_pred ccCCCCCCCcCCCCccEEEEccccc---ccCh-----H-HHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 190 VGIQDFKPEDLNIKYDVIWIQWVLM---FILD-----E-DIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 190 ~d~~~~~~~~~~~~FDlVvs~~vL~---hl~d-----e-d~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
+|..+... .++||+|+|-++-. +... . -...++.-+.+.|+|||.|++-.+..
T Consensus 159 GD~~~~~~---~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 159 GDCATVHT---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp SCGGGEEE---SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred cccccccc---CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 88765443 25899999865321 1100 1 14466777788999999999998543
No 375
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=95.01 E-value=0.068 Score=59.57 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=81.3
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcC------CCCccEEEE
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL------NIKYDVIWI 209 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~FDlVvs 209 (883)
.+|||+-||.|.++..+...|+..|.++|+++.+++..+.+... ..++..|+.++..... ...+|+|+.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----SLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----SEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----CceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 58999999999999988888988888999999999988887653 2567788877643211 257999998
Q ss_pred cccccccCh-------HHHHHHHHH---HHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccccc
Q psy8372 210 QWVLMFILD-------EDIIKFLNL---CKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKC 277 (883)
Q Consensus 210 ~~vL~hl~d-------ed~~~~l~~---~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~v 277 (883)
..-.+.++. +....++.+ +...++| .+++.++...-. .. . .......+. .|.+.|+.+
T Consensus 78 gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~----s~-~--~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 78 GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIM----QE-K--YSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTT----CG-G--GHHHHHHHH-HHHHTTEEE
T ss_pred cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhh----cc-C--cHHHHHHHH-HHHcCCCcc
Confidence 665444421 112234444 4444567 445555433211 10 0 011234555 788889887
No 376
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=94.97 E-value=0.27 Score=53.19 Aligned_cols=107 Identities=6% Similarity=0.011 Sum_probs=76.9
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc---cCCCccEEEccCCCCCCCc------C-CCCcc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD---CDKLDKCYNVGIQDFKPED------L-NIKYD 205 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~---~~~~~~~~~~d~~~~~~~~------~-~~~FD 205 (883)
..|+++|||-=..+..+.......|+-|| -|.+++..++.+... ......++.+|+.+ .... . .+.-=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 46999999987776544311113688889 589999888887643 23344678888875 2100 0 12345
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
++++..+++|+++++...+++.+...+.||+.+++....
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 788899999999988999999999999999998887654
No 377
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.91 E-value=0.099 Score=57.66 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=63.0
Q ss_pred cCCCccccchHHHHHHHHHHhhccc-CCCCCCeEEEEcCCCChHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHhhccCC
Q psy8372 106 GYSSISDLDIQTSNQFLSSLYCQKK-SDPGKTRVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDK 183 (883)
Q Consensus 106 ~y~~~~~~~~~~~~~lL~~l~~~~~-~~~~~~rVLDVGCGtG~~~~~l~~~g-~~~V~gvD~S~~~le~A~~~~~~~~~~ 183 (883)
.|++..=.+......+++.+..... ..+++..|||||.|.|.+|..++... +.+|+++|+++.++...++.. . ..
T Consensus 29 ~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~ 105 (353)
T 1i4w_A 29 FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GS 105 (353)
T ss_dssp GGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TS
T ss_pred CCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CC
Confidence 3444444577777778777743210 00145789999999999999998863 457999999999999988876 2 34
Q ss_pred CccEEEccCCCC
Q psy8372 184 LDKCYNVGIQDF 195 (883)
Q Consensus 184 ~~~~~~~d~~~~ 195 (883)
+.+.+.+|+.++
T Consensus 106 ~l~ii~~D~l~~ 117 (353)
T 1i4w_A 106 PLQILKRDPYDW 117 (353)
T ss_dssp SCEEECSCTTCH
T ss_pred CEEEEECCccch
Confidence 568888898655
No 378
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.76 E-value=0.041 Score=58.00 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~ 180 (883)
.++..|||..||+|..+..++..|. +++|+|+++.+++.|++++...
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence 5678999999999999987666654 5999999999999999998743
No 379
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=94.15 E-value=0.046 Score=60.16 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEcc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQW 211 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~ 211 (883)
..+|||+-||.|.++..+...| +..|.++|+++.+++..+.+.... .++..|+.++...... ..+|+|+...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~-----~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-----CEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcccc-----ccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 3589999999999999888888 447999999999999999887532 4677888776532111 1589999876
Q ss_pred cccccCh-------HH-HHHHHHHHHHHhccCc---EEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 212 VLMFILD-------ED-IIKFLNLCKQILNKNG---IIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 212 vL~hl~d-------ed-~~~~l~~~~r~LKPGG---~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
-.+.++. ++ ...++.++.++++.-. .+++.++... . .. ..+...+.+.|++.|+.+.
T Consensus 77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~-l---~~------~~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKG-F---EV------SSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCSEEEEEEETT-G---GG------SHHHHHHHHHHHHTTEEEE
T ss_pred CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcc-c---cC------HHHHHHHHHHHHHCCCeeE
Confidence 5443321 11 1234555555553211 2334443321 1 00 1234567778888888764
No 380
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.64 E-value=0.2 Score=61.12 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCCCC-----CCc-cceeccCCCCceeeEecC--HHHHHHHH--HccCCC--
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRTPG-----GAR-EFVVPTHEPNKFYSLVQS--PQQLKQLL--MVGSVD-- 417 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~~-----ga~-~f~v~~~~~~~~~~L~~S--pql~kq~l--~~~~~~-- 417 (883)
-..++.+.+|+.| -..||.|+.|..++....- ... .+.+...-....-.|++| |.+.+-+. ...+..
T Consensus 494 ~~~~~~~~ir~~L-~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 494 DRQHKTRTLKETL-EGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHH-HHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHH-HHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 3456778899999 4799999999999765311 112 233322211222356655 44433322 112222
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+|||.+.....| +||.|+..=+.+ .|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999965433234 999999876665 58999999999999876
No 381
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=93.41 E-value=0.15 Score=55.67 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+.++||+.||.|.++..+...|+..|.++|+++.+++..+.+.... ...|+.++..... ..+|+|+...-.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-------~~~Di~~~~~~~~-~~~D~l~~gpPCQ 82 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI-PDHDILCAGFPCQ 82 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS-CCCSEEEEECCCT
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-------CcCCHHHcCHhhC-CCCCEEEECCCCC
Confidence 4689999999999999888889888999999999999999887532 1567776654332 2589999865444
Q ss_pred ccCh-------HH----HHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 215 FILD-------ED----IIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 215 hl~d-------ed----~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
.++. ++ +-.-+.++.+.++|. +++.++...- .... .......+...|++.|+.+.
T Consensus 83 ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl----~~~~---~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNF----ASHD---NGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGG----GTGG---GGHHHHHHHHHHHHTTBCCE
T ss_pred CcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHH----Hhcc---ccHHHHHHHHHHHhCCCEEE
Confidence 3321 11 222233344445774 4444433211 1110 11124467777788887653
No 382
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=92.96 E-value=0.079 Score=56.39 Aligned_cols=105 Identities=13% Similarity=-0.080 Sum_probs=76.8
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC--CcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP--EDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~FDlVvs~~v 212 (883)
+..+||+=+|+|.++..+++. ..+++.+|.++..++..++++.. ..+++++..|...... .....+||+|++-..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 457899999999999988884 47899999999999999888764 3456778888543211 011247999999887
Q ss_pred ccccChHHHHHHHHHHHH--HhccCcEEEEEecc
Q psy8372 213 LMFILDEDIIKFLNLCKQ--ILNKNGIIIIKDNV 244 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r--~LKPGG~lvi~~~~ 244 (883)
.+.- .+...++..+.+ .+.|+|.+++--+.
T Consensus 169 Ye~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 169 YERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CCST--THHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCC--cHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 6532 236666666665 45689999887654
No 383
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=92.95 E-value=0.24 Score=58.48 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeccCC--------C-CCCccceeccCCCCceeeEecC--HHHHHHHHH--ccCC-C
Q psy8372 352 SKFLMRTREFLATHRDFVEVETPTLFKRT--------P-GGAREFVVPTHEPNKFYSLVQS--PQQLKQLLM--VGSV-D 417 (883)
Q Consensus 352 s~i~~~iR~f~~~~~gF~EV~TP~l~~~~--------~-~ga~~f~v~~~~~~~~~~L~~S--pql~kq~l~--~~~~-~ 417 (883)
+++.+.+|+.| ...||.|+.|+.++... + +++..+.+...-....-.|++| |.+.+-+.- ..+. =
T Consensus 394 ~~~~~~ir~~l-~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~v 472 (589)
T 3l4g_B 394 NKLTELLRHDM-AAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPL 472 (589)
T ss_dssp HHHHHHHHHHH-HHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHH-HHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCce
Confidence 45678899999 47999999999997631 1 1122333322211223357766 434333211 1111 2
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccCC--CHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFT--TRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~~--~~~dvm~~~E~li~~i 465 (883)
|+||+|+|||.+.....+.+|+.|+..-+.+. ++.++...+|.++..+
T Consensus 473 rlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 473 KLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998765555558999998877663 5888888888777654
No 384
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=92.87 E-value=0.062 Score=58.56 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHh-CCC-eEEEEeCCHHHHHHHH
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAK-HFD-KIDLLEQSSKFIEQAK 174 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~-g~~-~V~gvD~S~~~le~A~ 174 (883)
.+++.++|..||.|..+..++.. +.. .|+|+|.++.+++.|+
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 56889999999999999988876 333 8999999999999884
No 385
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=92.72 E-value=0.93 Score=47.62 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=104.0
Q ss_pred chhHHHHHHHHhhhcCCCccccccccCCCccccchHHHHHHHH--HHhhcccCCCCCCeEEEEcCCCChHHHHHHHh---
Q psy8372 81 GNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLS--SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK--- 155 (883)
Q Consensus 81 ~~~~~~~~~~~yWd~~~~~~~~~~~~y~~~~~~~~~~~~~lL~--~l~~~~~~~~~~~rVLDVGCGtG~~~~~l~~~--- 155 (883)
.....-++..+++.....+....+..+... ........++. .+..... .-.+.|+|+||-.|..+..++..
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~--~~~~~l~~~l~~~~l~~~i~--~vpG~ivE~GV~rG~S~~~~a~~~~~ 93 (257)
T 3tos_A 18 EETETTQRLTKLLTNSPIPTEELVNNLPLF--LRRHQMTDLLSMDALYRQVL--DVPGVIMEFGVRFGRHLGTFAALRGV 93 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSCGGGGGGCGGGG--CCHHHHHHHHHHHHHHHHTT--TSCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHhHHhh--hhHHHHHHHHHHHHHHHHhh--CCCCeEEEEecccCHHHHHHHHHHHH
Confidence 445566777888888766655554433211 11222233333 2222211 33558999999999988765432
Q ss_pred ----CC-CeEEEEe-----CCH----------------------HHHHHHHH---HHhhcc--CCCccEEEccCCCCCCC
Q psy8372 156 ----HF-DKIDLLE-----QSS----------------------KFIEQAKE---EILKDC--DKLDKCYNVGIQDFKPE 198 (883)
Q Consensus 156 ----g~-~~V~gvD-----~S~----------------------~~le~A~~---~~~~~~--~~~~~~~~~d~~~~~~~ 198 (883)
+. ..|+|+| +.+ ..++...+ +....+ ..+++++.+++.+..+.
T Consensus 94 l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~ 173 (257)
T 3tos_A 94 YEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPR 173 (257)
T ss_dssp HCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHH
T ss_pred hcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHH
Confidence 22 3799998 321 11111111 111111 25678888888764332
Q ss_pred ----cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcc
Q psy8372 199 ----DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKAN 274 (883)
Q Consensus 199 ----~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aG 274 (883)
....+||+|+.-.-. . +.....+..+...|+|||++++.+..... +......|.+.+.+.+
T Consensus 174 ~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~GGvIv~DD~~~~~-----------w~G~~~A~~ef~~~~~ 238 (257)
T 3tos_A 174 YLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTKGSIVAFDELDNPK-----------WPGENIAMRKVLGLDH 238 (257)
T ss_dssp HHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEEEEEEEESSTTCTT-----------CTHHHHHHHHHTCTTS
T ss_pred HHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCCCcEEEEcCCCCCC-----------ChHHHHHHHHHHhhCC
Confidence 112479999987632 1 23567889999999999999998853210 1112446777777777
Q ss_pred cccccc
Q psy8372 275 LKCVKS 280 (883)
Q Consensus 275 f~vv~~ 280 (883)
.++...
T Consensus 239 ~~i~~~ 244 (257)
T 3tos_A 239 APLRLL 244 (257)
T ss_dssp SCCEEC
T ss_pred CeEEEc
Confidence 766543
No 386
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=92.04 E-value=0.27 Score=53.68 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF--DKI-DLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWI 209 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~--~~V-~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs 209 (883)
...+++|+-||.|.++..+...|+ ..| .++|+++.+++..+.+.... ++..|+.++...... ..+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhccCCCCEEEe
Confidence 456899999999999998888885 556 79999999999998887532 456777776543221 26899997
Q ss_pred ccccccc--C--------hHHHHHHHHHHHH-Hhcc---CcEEEEEecccCCCcccccCCcccccccchhhhhhhhhccc
Q psy8372 210 QWVLMFI--L--------DEDIIKFLNLCKQ-ILNK---NGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANL 275 (883)
Q Consensus 210 ~~vL~hl--~--------ded~~~~l~~~~r-~LKP---GG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf 275 (883)
..-.+.+ + ++....++.++.+ +++. .-.+++.++...- .. ......+.+.|++.|+
T Consensus 83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl----~~------~~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF----KE------SLVFKEIYNILIKNQY 152 (327)
T ss_dssp CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG----GG------SHHHHHHHHHHHHTTC
T ss_pred cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh----cC------hHHHHHHHHHHHhCCC
Confidence 6654444 1 1122356666666 5542 1345555544321 00 1234567777888887
Q ss_pred ccc
Q psy8372 276 KCV 278 (883)
Q Consensus 276 ~vv 278 (883)
.+.
T Consensus 153 ~v~ 155 (327)
T 3qv2_A 153 YIK 155 (327)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 387
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=91.99 E-value=0.11 Score=58.60 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred ceeeEEEecCe--EEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCC-cceeccHHHHHHHHhCCCCcccc
Q psy8372 776 GLHYDLVLNGN--EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPH-GGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 776 ~~~~Dlv~~G~--Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPh-gG~glGldRlvm~l~~~~sIRdv 852 (883)
+.+.|+.++|. |++|- -.+| |++++ ..|++. |. -.|+||||||.|++.|+++||..
T Consensus 238 gr~a~I~~~g~wlE~lG~-G~lh-P~Vl~----~~gl~~---------------~vg~afel~le~l~~~~~~i~DiR~~ 296 (415)
T 3cmq_A 238 SFEMEINFHGEWLEVLGC-GVME-QQLVN----SAGAQD---------------RIGWAFGLGLERLAMILYDIPDIRLF 296 (415)
T ss_dssp EEEEEEEETTEEEEEEEE-EEEC-HHHHH----HTTCTT---------------EEEEEEEEEHHHHHHHHSCCCCGGGG
T ss_pred ceEEEEEECCeeEEEEEE-EEeC-HHHHH----HcCCCC---------------cceEEEEEcHHHHhhhhcCcchhhhh
Confidence 36789999985 56655 4455 55443 334422 34 47899999999999999999954
No 388
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=91.97 E-value=0.2 Score=51.20 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-C--C----CccceeccCCCCceeeEecCH--HHHHHHHH--ccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTP-G--G----AREFVVPTHEPNKFYSLVQSP--QQLKQLLM--VGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~--g----a~~f~v~~~~~~~~~~L~~Sp--ql~kq~l~--~~~~~-- 417 (883)
..++.+.+|+.|. ..||.||-|-.+++... . + .....+...-....-.|++|- .+.+-+.- ..+..
T Consensus 6 ~~~~~~~ir~~l~-~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLV-GCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHH-HTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHH-HCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 3467788999994 79999999999976421 0 1 111222211112233577774 33332211 11222
Q ss_pred cEEEEeeceecCCCCC------CCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRP------DRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~------~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||+.+..+. ....|..+|-+-+++ .|+.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 8999999999865321 112577777776655 35888888888888664
No 389
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=91.94 E-value=0.12 Score=55.53 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|--.|+||||||.|+..|+++||..
T Consensus 251 ~~~afel~le~L~m~~~~i~diR~~ 275 (294)
T 2rhq_A 251 SGFAFGMGPDRIAMLKYGIEDIRYF 275 (294)
T ss_dssp EEEEEEECHHHHHHHHHTCCCTTHH
T ss_pred eEEEEEEeHHHHHHHHcCCCHHHHH
Confidence 3568899999999999999999964
No 390
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=91.73 E-value=0.26 Score=50.31 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeccCCC-C--C----CccceeccCCCCceeeEecCH--HHHHHHH--HccCCC--
Q psy8372 351 RSKFLMRTREFLATHRDFVEVETPTLFKRTP-G--G----AREFVVPTHEPNKFYSLVQSP--QQLKQLL--MVGSVD-- 417 (883)
Q Consensus 351 rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~~-~--g----a~~f~v~~~~~~~~~~L~~Sp--ql~kq~l--~~~~~~-- 417 (883)
..++.+.+|+.|. ..||.||.|-.+++... . + .....+...-....-.|++|- .+.+-+. ...+..
T Consensus 6 ~~~~~~~ir~~L~-~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLV-GAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHH-HTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHH-HCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 3467889999994 79999999999976421 0 1 111222211113344688774 3333221 123444
Q ss_pred cEEEEeeceecCCCCC------CCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRP------DRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~------~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||+.++... ....|..++-.-+++ .|+.++...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 8999999999765321 112577777766554 47999999999988765
No 391
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=89.22 E-value=0.69 Score=51.97 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCChHHHHHH-HhCC--CeEEEEeCCHHHHHHHHHHHhh--c-cC-CCccEEEccCC
Q psy8372 133 PGKTRVLDVGAGIGRISKYLL-AKHF--DKIDLLEQSSKFIEQAKEEILK--D-CD-KLDKCYNVGIQ 193 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~-~~g~--~~V~gvD~S~~~le~A~~~~~~--~-~~-~~~~~~~~d~~ 193 (883)
.++..|+||||+.|..+..++ ..+. .+|+++|+++...+..+++... + .. .++.++...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 578899999999999998777 3443 4899999999999999998875 1 23 44455554444
No 392
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=88.70 E-value=1.5 Score=47.35 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=81.1
Q ss_pred CeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMF 215 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~h 215 (883)
++|||+=||.|.++.-+-..|+..|.++|+++.+++..+.+... .++..|+.++..... ...|+++...-.+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------~~~~~DI~~i~~~~~-~~~D~l~ggpPCQ~ 73 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------KLIKGDISKISSDEF-PKCDGIIGGPPSQS 73 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------EEEESCGGGCCGGGS-CCCSEEECCCCGGG
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------CcccCChhhCCHhhC-CcccEEEecCCCCC
Confidence 58999999999999888888988888999999999988877642 467888888765443 36899996543332
Q ss_pred c---------ChHHHHHHHH---HHHHHhccCcEEEEEecccCCCcccccCCcccccccchhhhhhhhhcccccc
Q psy8372 216 I---------LDEDIIKFLN---LCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 216 l---------~ded~~~~l~---~~~r~LKPGG~lvi~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv 278 (883)
+ .+ ....++. ++.+.++|. +++.++... ...... ......+...|.+.|+.+.
T Consensus 74 fS~ag~~~g~~d-~R~~L~~~~~r~i~~~~Pk--~~~~ENV~g----l~~~~~---~~~~~~i~~~l~~~GY~v~ 138 (331)
T 3ubt_Y 74 WSEGGSLRGIDD-PRGKLFYEYIRILKQKKPI--FFLAENVKG----MMAQRH---NKAVQEFIQEFDNAGYDVH 138 (331)
T ss_dssp TEETTEECCTTC-GGGHHHHHHHHHHHHHCCS--EEEEEECCG----GGGCTT---SHHHHHHHHHHHHHTEEEE
T ss_pred cCCCCCccCCCC-chhHHHHHHHHHHhccCCe--EEEeeeecc----cccccc---cchhhhhhhhhccCCcEEE
Confidence 2 12 1123333 444556784 444554321 111111 1124466777888887653
No 393
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=88.67 E-value=7.3 Score=42.39 Aligned_cols=144 Identities=12% Similarity=0.129 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-C-eEEEEeCCHHHHHHHHHHHhhc-----------------------cCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-D-KIDLLEQSSKFIEQAKEEILKD-----------------------CDKLDKCY 188 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~-~V~gvD~S~~~le~A~~~~~~~-----------------------~~~~~~~~ 188 (883)
+...|+-+|||.=.....+...+. . .++=||. |..++.=++.+... ......++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 456899999999888877766532 2 5666775 44444333332210 12344677
Q ss_pred EccCCCCCC--------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecccCCCcc------cccC
Q psy8372 189 NVGIQDFKP--------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------EYDD 254 (883)
Q Consensus 189 ~~d~~~~~~--------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~~~~~~~------~~~~ 254 (883)
.+|+.+... ....+.-=++++-.++.+++.++..++|+.+.+.. |+|.+++.+........ .+..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~~ 247 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLRR 247 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHHH
Confidence 788765210 00013456888999999999988999999999876 45666666654322110 0000
Q ss_pred -----Ccccccccchhhhhhhhhccccccc
Q psy8372 255 -----EDSSVVRSLPQFCLLFSKANLKCVK 279 (883)
Q Consensus 255 -----~~~~~~~s~~~~~~l~~~aGf~vv~ 279 (883)
..-..+.+.+...+.|.++||..+.
T Consensus 248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~ 277 (334)
T 3iei_A 248 RQCDLAGVETCKSLESQKERLLSNGWETAS 277 (334)
T ss_dssp TTCCCTTGGGGGCHHHHHHHHHTTTCSEEE
T ss_pred hCCCCcccccCCCHHHHHHHHHHcCCCcce
Confidence 0111234566777888888888653
No 394
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=88.37 E-value=0.38 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.698 Sum_probs=22.9
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|.-.||||||||.|++.|.++||+.
T Consensus 322 ~v~afeLgLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 322 PVMNLGLGVERLAMILYGYDDVRKM 346 (534)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred cEEEEEecHHHHHHhhcCCchhhhh
Confidence 5568999999999999999999986
No 395
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=88.03 E-value=0.68 Score=55.39 Aligned_cols=128 Identities=13% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-----------CC--eEEEEeC---CHHHHHHHHHH-----------HhhccCC---
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-----------FD--KIDLLEQ---SSKFIEQAKEE-----------ILKDCDK--- 183 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-----------~~--~V~gvD~---S~~~le~A~~~-----------~~~~~~~--- 183 (883)
+.-+|||+|-|+|.+....+... .. +++++|. +.+.+..+-.. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999999876554431 11 6889998 77777644332 1111111
Q ss_pred -----------CccEEEccCCCCCCCc---CCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 184 -----------LDKCYNVGIQDFKPED---LNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 184 -----------~~~~~~~d~~~~~~~~---~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
..+...+|+.+..+.. ....||+|+...--....++- -..+++.++++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 1123344443322211 125799999854222211111 2478999999999999876443
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....++.+.++||.+...
T Consensus 220 -------------~~~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 220 -------------SAGFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp -------------CCHHHHHHHHHHTCEEEEE
T ss_pred -------------CcHHHHHHHHhCCeEEEec
Confidence 1346788899999987643
No 396
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=88.00 E-value=0.94 Score=55.09 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCeeccCC-----CCCCccceeccCCCCceeeEecC--HHHHHHHH--HccC-C--C
Q psy8372 350 FRSKFLMRTREFLATHRDFVEVETPTLFKRT-----PGGAREFVVPTHEPNKFYSLVQS--PQQLKQLL--MVGS-V--D 417 (883)
Q Consensus 350 ~rs~i~~~iR~f~~~~~gF~EV~TP~l~~~~-----~~ga~~f~v~~~~~~~~~~L~~S--pql~kq~l--~~~~-~--~ 417 (883)
-..++.+.+|+.| ...||.|+.|-.++... +.+...+.+...-....-.|++| |.+..-+. ...+ . -
T Consensus 490 ~~~~~~~~ir~~L-~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 490 APYRKEQRLREVL-SGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHH-HHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHH-HHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 3566788899999 57999999998887652 11222344432211222356655 44433321 1123 2 2
Q ss_pred cEEEEeeceecCCCCCCCCcceecccccccC------------CCHHHHHHHHHHHHHHH
Q psy8372 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSF------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 418 rvf~I~~~FR~E~~~~~r~~EFt~le~e~~~------------~~~~dvm~~~E~li~~i 465 (883)
|+||||+||| + .|+.|+..=+.+ .|+.|+...+|.++..+
T Consensus 569 rlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 9999999999 2 789999876666 47999999999999876
No 397
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=87.63 E-value=0.69 Score=49.62 Aligned_cols=74 Identities=14% Similarity=0.010 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC--CCccEEE
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN--IKYDVIW 208 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~--V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~FDlVv 208 (883)
....+++|+-||.|.++..+...|+.. |.++|+++.+++..+.+... ..++..|+.++...... +.+|+++
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----KIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----CEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----CceeCCChHHccHHHhcccCCcCEEE
Confidence 456799999999999998888888884 68999999998887777542 14677888876543211 3689999
Q ss_pred Ecc
Q psy8372 209 IQW 211 (883)
Q Consensus 209 s~~ 211 (883)
...
T Consensus 89 ggp 91 (295)
T 2qrv_A 89 GGS 91 (295)
T ss_dssp ECC
T ss_pred ecC
Confidence 754
No 398
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=87.45 E-value=1.1 Score=49.30 Aligned_cols=97 Identities=16% Similarity=0.005 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccE
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDl 206 (883)
..++.+||-+|||. |..+..+++. |...|+++|.++..++.+++.... ..+...-.++.. ...++.+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------HVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------EEecCCccCHHHHHHHhcCCCCcE
Confidence 46788999999876 6666666654 554799999999999988765321 122211111100 001136999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+-... . ...+..+.++|+|||++++..
T Consensus 262 vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTG-----S---PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSC-----C---HHHHHHHHHTEEEEEEEEECC
T ss_pred EEECCC-----C---HHHHHHHHHHHhcCCEEEEeC
Confidence 976432 1 246788899999999988765
No 399
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=86.62 E-value=0.53 Score=51.44 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=55.8
Q ss_pred CeEEEEcCCCChHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCC-CCccEEEEccc
Q psy8372 136 TRVLDVGAGIGRISKYLLAKHF--DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN-IKYDVIWIQWV 212 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~g~--~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~FDlVvs~~v 212 (883)
.+++|+-||.|.++..+...|+ ..|.++|+++.+++..+.+.... .++..|+.++.....+ ..+|+++...-
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~-----~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET-----NLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-----CEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC-----ceeccccccCCHHHhccCCCCEEEecCC
Confidence 4899999999999988888886 46889999999999888877532 3566777766542211 25899887554
Q ss_pred cccc
Q psy8372 213 LMFI 216 (883)
Q Consensus 213 L~hl 216 (883)
.+.+
T Consensus 79 CQ~f 82 (333)
T 4h0n_A 79 CQPF 82 (333)
T ss_dssp CCCS
T ss_pred Ccch
Confidence 4433
No 400
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=86.45 E-value=1.5 Score=48.70 Aligned_cols=101 Identities=13% Similarity=-0.066 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC-CC----CcCCCCc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-KP----EDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~-~~----~~~~~~F 204 (883)
..++.+||-+|||. |..+..+++. |..+|+++|.|+..++.+++... ..+...-.++ .. ......+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF-------ETIDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC-------EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEcCCCcchHHHHHHHHhCCCCC
Confidence 46788999999976 7777766664 55479999999998888764321 1222211111 00 0001269
Q ss_pred cEEEEcccccc---------cChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMF---------ILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~h---------l~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+-...-.. .+ ....+..+.++|++||++++..
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTET---PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBC---TTHHHHHHHHHEEEEEEEECCS
T ss_pred CEEEECCCCccccccccccccc---cHHHHHHHHHHHhcCCEEEEec
Confidence 99986543221 11 1246788899999999987654
No 401
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=85.50 E-value=0.59 Score=51.94 Aligned_cols=102 Identities=14% Similarity=-0.026 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC-CC----CCcCCCCc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FK----PEDLNIKY 204 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~-~~----~~~~~~~F 204 (883)
..++.+||-+|||. |.++..+++. |...|+++|.++.-++.|++... ..+...-.+ +. .......+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~i~~~~~~~~~~~v~~~t~g~g~ 255 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-------EIADLSLDTPLHEQIAALLGEPEV 255 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC-------cEEccCCcchHHHHHHHHhCCCCC
Confidence 46788999999866 6667666665 45479999999999988865322 112111111 00 00001369
Q ss_pred cEEEEccccc---------ccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLM---------FILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~---------hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+-...-. |.++ ....+..+.++|++||++++..
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 256 DCAVDAVGFEARGHGHEGAKHEA--PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBC--TTHHHHHHHHHEEEEEEEEECS
T ss_pred CEEEECCCCcccccccccccccc--hHHHHHHHHHHHhcCCEEEEec
Confidence 9998643321 1212 3357888999999999987754
No 402
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=85.31 E-value=0.55 Score=51.41 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc---CCCCCC---CcCCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDFKP---EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d---~~~~~~---~~~~~~ 203 (883)
..++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++.... ..+..+ ..++.. ...+..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------LVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------EEEcCcccccchHHHHHHHHhCCC
Confidence 46788999999875 6666666664 444799999999988888753221 122211 000000 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+-... . ...+..+.++|+|||++++..
T Consensus 243 ~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 243 PEVTIECTG-----A---EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEe
Confidence 899986432 1 135677889999999988764
No 403
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=84.81 E-value=1.2 Score=48.11 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVv 208 (883)
..++.+||-.|||. |..+..+++....+|+++|.++.-++.+++.... ..+...-.++... ...+.+|+|+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------VAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------EEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 45788999999975 7777777765444799999999999888764321 1122111111000 0013688887
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-... -...+..+.++|+|||++++..
T Consensus 238 d~~g--------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 238 VTAV--------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ESSC--------CHHHHHHHHHHEEEEEEEEECS
T ss_pred EeCC--------CHHHHHHHHHHhccCCEEEEeC
Confidence 6432 1246788899999999998764
No 404
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=84.74 E-value=0.68 Score=51.04 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CC---cCCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PE---DLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~---~~~~~ 203 (883)
..++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++..... .+...-.++. .. ..++.
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~------vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA------TVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE------EECTTSSCHHHHHHSTTSSSTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE------EECCCCcCHHHHHHhhhhccCCC
Confidence 35788999999865 5566656554 5547999999999998887754321 1111111100 00 11247
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+|+-... . ...+..+.++|++||++++...
T Consensus 254 ~Dvvid~~G-----~---~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 254 VDVVIECAG-----V---AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEEEEECSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEec
Confidence 999986432 1 2467888999999999988653
No 405
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=83.98 E-value=1.4 Score=52.72 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHhC-----------CC--eEEEEeC---CHHHHHHHHHH-----------HhhccC----
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKH-----------FD--KIDLLEQ---SSKFIEQAKEE-----------ILKDCD---- 182 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g-----------~~--~V~gvD~---S~~~le~A~~~-----------~~~~~~---- 182 (883)
+.-+|||+|.|+|.....++... .. +++.+|. +...+..|-.. ......
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999877665421 11 6888998 55555443221 111100
Q ss_pred ----------CCccEEEccCCCCCCCc---CCCCccEEEEcccccccChHH-HHHHHHHHHHHhccCcEEEEEecccCCC
Q psy8372 183 ----------KLDKCYNVGIQDFKPED---LNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKDNVASGV 248 (883)
Q Consensus 183 ----------~~~~~~~~d~~~~~~~~---~~~~FDlVvs~~vL~hl~ded-~~~~l~~~~r~LKPGG~lvi~~~~~~~~ 248 (883)
-..+++.+|+.+..+.- ....+|.++....-..-.++- -..++..++++++|||.+....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------ 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC------
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 02244555654432211 125799998854221111100 1478999999999999866433
Q ss_pred cccccCCcccccccchhhhhhhhhcccccccc
Q psy8372 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKS 280 (883)
Q Consensus 249 ~~~~~~~~~~~~~s~~~~~~l~~~aGf~vv~~ 280 (883)
.....++.+.++||.+...
T Consensus 212 -------------~~~~vr~~l~~aGf~~~~~ 230 (689)
T 3pvc_A 212 -------------AAGFVRRGLQQAGFNVTKV 230 (689)
T ss_dssp -------------CCHHHHHHHHHTTCEEEEE
T ss_pred -------------CcHHHHHHHHhCCeEEEec
Confidence 1346788899999987654
No 406
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=83.40 E-value=1.4 Score=47.83 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.... ..+ .+...+ ...+|+|+-.
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~v~-~~~~~~-----~~~~D~vid~ 241 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK------HFY-TDPKQC-----KEELDFIIST 241 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS------EEE-SSGGGC-----CSCEEEEEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC------eec-CCHHHH-----hcCCCEEEEC
Confidence 36788999999875 6666666655434799999999988888763221 122 222221 1279999864
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..-. ..+..+.++|+|||++++..
T Consensus 242 ~g~~--------~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 242 IPTH--------YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CCSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred CCcH--------HHHHHHHHHHhcCCEEEEEC
Confidence 3211 24566888999999998865
No 407
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=83.38 E-value=0.76 Score=50.13 Aligned_cols=98 Identities=14% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.+++..... .+...-.++.. ......+|
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD------IINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE------EECGGGSCHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce------EEcCCCcCHHHHHHHHcCCCCCC
Confidence 46788999999875 6666666655 4437999999999888887754321 12111111100 00013699
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-...- ...+..+.++|+|||+++....
T Consensus 238 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 238 KVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp EEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence 99864321 1367778899999999987653
No 408
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=82.56 E-value=1.6 Score=47.33 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
.++..|||.-||+|..+..+...|. ..+|+|+++..++.|++++..
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 5688999999999999986666654 599999999999999988764
No 409
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=82.34 E-value=2.7 Score=45.64 Aligned_cols=97 Identities=19% Similarity=0.068 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCC---CcC----CC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKP---EDL----NI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~---~~~----~~ 202 (883)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.... ..+...- .++.. ... ..
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------VTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------EEEcCcccccHHHHHHHHhccccCC
Confidence 35788999999864 5666666654333599999999988888753221 1222110 11100 000 13
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.... . ...+..+.++|+|||+++...
T Consensus 240 g~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 240 LPNVTIDCSG-----N---EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEECCC-----C---HHHHHHHHHHHhcCCEEEEEe
Confidence 6999986432 1 135677889999999988764
No 410
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=81.83 E-value=3.6 Score=47.07 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc---------------
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------------- 199 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--------------- 199 (883)
..+++|+=||.|.++.-+...|+..|.++|+++.+++.-+.+.... .....+..|+.++....
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 5689999999999998887778878899999999988888776321 12245667776553210
Q ss_pred CCCCccEEEEcccccccChH-----------------HHHHHHHHHHH---HhccCcEEEEEecccCCCcccccCCcccc
Q psy8372 200 LNIKYDVIWIQWVLMFILDE-----------------DIIKFLNLCKQ---ILNKNGIIIIKDNVASGVKNEYDDEDSSV 259 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~hl~de-----------------d~~~~l~~~~r---~LKPGG~lvi~~~~~~~~~~~~~~~~~~~ 259 (883)
....+|+++...-.+.++.. ....++.++.+ .++| .+++.++...- .... .
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP--k~fvlENV~gl----~s~~---~ 236 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP--AMFVLENVKNL----KSHD---K 236 (482)
T ss_dssp HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC--SEEEEEEETTT----TTGG---G
T ss_pred cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC--cEEEEeCcHHH----hccc---C
Confidence 01358999976544443211 01123444444 4466 45555544321 1111 1
Q ss_pred cccchhhhhhhhhcccccc
Q psy8372 260 VRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 260 ~~s~~~~~~l~~~aGf~vv 278 (883)
......+...|++.|+.+.
T Consensus 237 g~~f~~i~~~L~~lGY~v~ 255 (482)
T 3me5_A 237 GKTFRIIMQTLDELGYDVA 255 (482)
T ss_dssp GHHHHHHHHHHHHTTEEET
T ss_pred CcHHHHHHHHHhcCCcEEE
Confidence 1234577788889998875
No 411
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=80.96 E-value=0.63 Score=50.60 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||-+|+|. |..+..+++. +..+|+++|.++.-++.+++.... ..+..+- ++.. ......+|
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~------~~i~~~~-~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD------AAVKSGA-GAADAIRELTGGQGAT 241 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS------EEEECST-THHHHHHHHHGGGCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC------EEEcCCC-cHHHHHHHHhCCCCCe
Confidence 35788999999865 6666666654 356899999999999888764321 1222111 1100 00012689
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-... . ...+..+.++|++||++++...
T Consensus 242 ~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 242 AVFDFVG-----A---QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEEESSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECCC-----C---HHHHHHHHHHHhcCCEEEEECC
Confidence 9876432 1 2467889999999999987653
No 412
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=80.79 E-value=1.6 Score=47.94 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=59.9
Q ss_pred CCCeEEEEc-C-CCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCCCCccEE
Q psy8372 134 GKTRVLDVG-A-GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVG-C-GtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~FDlV 207 (883)
++.+||=+| + |.|..+..+++. +..+|+++|.++.-++.+++..... .+... .++. .....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~------vi~~~-~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH------VIDHS-KPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE------EECTT-SCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE------EEeCC-CCHHHHHHHhcCCCceEE
Confidence 677999998 4 347777777775 5557999999999888887632211 11110 0000 00012479998
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+-... -...+..+.++|++||++++.
T Consensus 244 id~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 76432 124678889999999999875
No 413
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=80.18 E-value=2.5 Score=45.73 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHhh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSS---KFIEQAKEEILK 179 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~---~~le~A~~~~~~ 179 (883)
.++..|||.-||+|..+..+...+. ..+|+|+++ ..++.|++++..
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 5688999999999999987776665 499999999 999999998764
No 414
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=80.02 E-value=1 Score=48.86 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCC-cCCCCccEEE
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPE-DLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~g--~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~~FDlVv 208 (883)
++.+||-+|+|. |..+..+++.. ..+|+++|.|+.-++.+++..... .+...- .+.... .....+|+|+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~~~~~g~g~D~vi 243 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY------VSEMKDAESLINKLTDGLGASIAI 243 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE------EECHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE------EeccccchHHHHHhhcCCCccEEE
Confidence 688999999964 55565565543 336999999999988887643211 111100 000000 0013699998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
-... . ...++.+.++|+|||++++..
T Consensus 244 d~~g-----~---~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 244 DLVG-----T---EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp ESSC-----C---HHHHHHHHHHEEEEEEEEECC
T ss_pred ECCC-----C---hHHHHHHHHHhhcCCEEEEeC
Confidence 6532 1 136778889999999988754
No 415
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=79.98 E-value=1.1 Score=49.25 Aligned_cols=96 Identities=18% Similarity=0.078 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEc
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQ 210 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~ 210 (883)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.... ..+...-.+.... ..+.+|+|+-.
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~-~~~g~Dvvid~ 264 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD------EVVNSRNADEMAA-HLKSFDFILNT 264 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------EEEETTCHHHHHT-TTTCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------EEeccccHHHHHH-hhcCCCEEEEC
Confidence 35788999999975 6666666654333599999999988888764321 1121110000000 01369999864
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..-. ..+..+.++|+|+|+++...
T Consensus 265 ~g~~--------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 265 VAAP--------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp CSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred CCCH--------HHHHHHHHHhccCCEEEEec
Confidence 3221 23566788999999988754
No 416
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=79.32 E-value=1.3 Score=48.59 Aligned_cols=98 Identities=13% Similarity=-0.038 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
...++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.... ..+..+..++.. ......+|
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------HGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------EEEcCCcccHHHHHHHHhCCCCce
Confidence 346788999999775 5666656655434799999999988888764321 122211111100 00023799
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-... . ..+..+.++|+|||++++...
T Consensus 260 ~vid~~g-----~----~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 260 HILEIAG-----G----AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEEEETT-----S----SCHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC-----h----HHHHHHHHHhhcCCEEEEEec
Confidence 9986543 1 245667889999999988754
No 417
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=79.10 E-value=1.6 Score=47.79 Aligned_cols=99 Identities=14% Similarity=-0.037 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC---CCCC----CCcCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI---QDFK----PEDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~---~~~~----~~~~~~ 202 (883)
..++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++. ... .+. ...+. .++. ......
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~-~~~~~~~~~~~~~~v~~~t~g~ 251 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---VVT-HKVERLSAEESAKKIVESFGGI 251 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---CEE-EECCSCCHHHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---ccc-ccccccchHHHHHHHHHHhCCC
Confidence 46788999999865 5666666654 444599999999999999876 311 111 11110 0000 000024
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+|+|+-... . ...+..+.++|++||++++...
T Consensus 252 g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 252 EPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECCC
T ss_pred CCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEcc
Confidence 7999986432 1 1367788899999999987653
No 418
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=79.06 E-value=2.9 Score=44.98 Aligned_cols=94 Identities=18% Similarity=0.079 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCCC
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~ 203 (883)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++. . .. ...|..+... ....+.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g---~~----~~~d~~~~~~~~~~~~~~~~~~ 214 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-G---FD----AAFNYKTVNSLEEALKKASPDG 214 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-T---CS----EEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-C---Cc----EEEecCCHHHHHHHHHHHhCCC
Confidence 457889999998 556665555554333699999999888877432 1 11 1122222000 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+.+.. . ..+..+.++|++||++++..
T Consensus 215 ~d~vi~~~g-----~----~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 215 YDCYFDNVG-----G----EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEEESSC-----H----HHHHHHHTTEEEEEEEEECC
T ss_pred CeEEEECCC-----h----HHHHHHHHHHhcCCEEEEEe
Confidence 999987543 1 24677889999999988764
No 419
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=78.41 E-value=1 Score=48.06 Aligned_cols=91 Identities=5% Similarity=-0.036 Sum_probs=52.7
Q ss_pred CccEEEccCCCCCCCcCCCCccEEEEcccccccCh------------------HHHHHHHHHHHHHhccCcEEEEEeccc
Q psy8372 184 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD------------------EDIIKFLNLCKQILNKNGIIIIKDNVA 245 (883)
Q Consensus 184 ~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~d------------------ed~~~~l~~~~r~LKPGG~lvi~~~~~ 245 (883)
.+.++++|+.+....-.+++||+|+++.-.....+ ..+..+++++.++|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 34688888877432222368999999765432110 123567889999999999998876321
Q ss_pred CCCcccccCCccc--ccccchhhhhhhhhcccccc
Q psy8372 246 SGVKNEYDDEDSS--VVRSLPQFCLLFSKANLKCV 278 (883)
Q Consensus 246 ~~~~~~~~~~~~~--~~~s~~~~~~l~~~aGf~vv 278 (883)
.. .....+. .......+..+++++||...
T Consensus 101 ~~----~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~ 131 (297)
T 2zig_A 101 AV----ARRRFGRHLVFPLHADIQVRCRKLGFDNL 131 (297)
T ss_dssp EE----ECC----EEEECHHHHHHHHHHHTTCEEE
T ss_pred cc----ccccCCcccccccHHHHHHHHHHcCCeee
Confidence 10 0000000 11112356677888888654
No 420
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=78.16 E-value=1.9 Score=46.77 Aligned_cols=95 Identities=20% Similarity=-0.013 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCccEE
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FDlV 207 (883)
++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++..... .+..+..++.. ......+|+|
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~------~~~~~~~~~~~~v~~~~~g~g~D~v 240 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY------VINPFEEDVVKEVMDITDGNGVDVF 240 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE------EECTTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE------EECCCCcCHHHHHHHHcCCCCCCEE
Confidence 788999999953 5555555554 5536999999999888887543211 11111111100 0001369999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..... ...++.+.++|+++|+++...
T Consensus 241 id~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 241 LEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 865321 246678889999999988764
No 421
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=77.08 E-value=0.92 Score=44.87 Aligned_cols=93 Identities=18% Similarity=0.033 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-----C-cCCC
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-----E-DLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-----~-~~~~ 202 (883)
..++.+||..|+ |.|..+..++. .|. +|+++|.++..++.+++. +.. ..+ |..+... . ....
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~~--~~~--d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL----GVE--YVG--DSRSVDFADEILELTDGY 106 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT----CCS--EEE--ETTCSTHHHHHHHHTTTC
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC--EEe--eCCcHHHHHHHHHHhCCC
Confidence 457889999995 44555554544 455 699999998887766532 111 111 2221110 0 0013
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.+.. . ..+..+.++|+|||++++..
T Consensus 107 ~~D~vi~~~g-----~----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 107 GVDVVLNSLA-----G----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp CEEEEEECCC-----T----HHHHHHHHTEEEEEEEEECS
T ss_pred CCeEEEECCc-----h----HHHHHHHHHhccCCEEEEEc
Confidence 6999986542 1 35678889999999988754
No 422
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=76.19 E-value=2.5 Score=45.82 Aligned_cols=96 Identities=20% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcCC--CChHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCC---CCCcCC-CC
Q psy8372 132 DPGKTRVLDVGAG--IGRISKYLLAK--HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF---KPEDLN-IK 203 (883)
Q Consensus 132 ~~~~~rVLDVGCG--tG~~~~~l~~~--g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~~ 203 (883)
..++.+||-.|+| .|..+..++.. |. +|+++|.++..++.+++.... ..+...-.+. ...... +.
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGAD------YVINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCC------EEecCCCccHHHHHHHHhcCCC
Confidence 3578899999998 45555555544 54 699999999988888653211 1121111111 000001 37
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+....- ...++.+.++|+|+|++++..
T Consensus 241 ~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 241 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred ceEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 9999865431 136677889999999988754
No 423
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=76.03 E-value=1.2 Score=48.28 Aligned_cols=96 Identities=15% Similarity=0.008 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCC--CChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCC
Q psy8372 131 SDPGKTRVLDVGAG--IGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCG--tG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~ 203 (883)
...++.+||-+||| .|..+..+++. |. +|+++|.++.-++.+++.... ..+...-.++.. ......
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~------~~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA------YVIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS------EEEETTTSCHHHHHHHHTTTSC
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc------EEEeCCcccHHHHHHHHhCCCC
Confidence 44678899999997 56666666654 55 699999999888888764321 112111111100 000237
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+....- + .+..+.++|++||++++..
T Consensus 214 ~Dvvid~~g~-----~----~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 214 ADAAIDSIGG-----P----DGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEEESSCH-----H----HHHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCCC-----h----hHHHHHHHhcCCCEEEEEe
Confidence 9999874421 1 1233458999999988765
No 424
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=75.64 E-value=2.5 Score=46.09 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCC-CCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ-DFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~FDlVv 208 (883)
..++.+||-+|+|. |..+..+++. |. +|+++|.++.-++.+++.... ..+...-. ++.. ...+.+|+|+
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~------~v~~~~~~~~~~~-~~~~~~D~vi 248 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGAD------HYIATLEEGDWGE-KYFDTFDLIV 248 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS------EEEEGGGTSCHHH-HSCSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCC------EEEcCcCchHHHH-HhhcCCCEEE
Confidence 35788999999853 5555555553 55 599999999888888764321 12222111 1100 0013699998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
....-. . ...++.+.++|++||+++...
T Consensus 249 d~~g~~--~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 249 VCASSL--T----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp ECCSCS--T----TCCTTTGGGGEEEEEEEEECC
T ss_pred ECCCCC--c----HHHHHHHHHHhcCCCEEEEec
Confidence 754320 0 013345778999999988754
No 425
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=75.37 E-value=1.8 Score=46.06 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=40.7
Q ss_pred eeeEEEecCeEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCccccc
Q psy8372 777 LHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVI 853 (883)
Q Consensus 777 ~~~Dlv~~G~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdvi 853 (883)
.+.+++++|.|||- -.+| |++++ +..|++ +|...|+||||||+|+..|.++||+.-
T Consensus 222 r~a~i~~~~~~iG~--G~lh-P~vl~---~~~~i~---------------~~v~~~el~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 222 DTLDVMHGDLELSS--ALVG-PIPLD---REWGID---------------KPWIGAGFGLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp EEEEEEETTEEEEE--EEES-CCGGG---GGGTCC---------------SCEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred CcccEeeCCEEEEE--EEec-HHHHH---HhCCCC---------------CceEEEEECHHHHHHHHcCCcHHHHHh
Confidence 56789999999965 4455 33321 233443 255789999999999999999999753
No 426
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=74.93 E-value=3.2 Score=44.64 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccE
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDl 206 (883)
..++.+||-.|| |.|..+..++.....+|+++|.++.-++.+.+... .. ..+...-.++.. ....+.+|+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g---~~--~~~~~~~~~~~~~~~~~~~~~~d~ 221 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG---FD--GAIDYKNEDLAAGLKRECPKGIDV 221 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---CS--EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---CC--EEEECCCHHHHHHHHHhcCCCceE
Confidence 467889999998 45666666665533479999999988887733221 11 112111111100 000246999
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+.+.. . ..+..+.++|++||++++..
T Consensus 222 vi~~~g-----~----~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 222 FFDNVG-----G----EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEESSC-----H----HHHHHHHTTEEEEEEEEECC
T ss_pred EEECCC-----c----chHHHHHHHHhhCCEEEEEe
Confidence 886442 1 36778889999999988765
No 427
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=74.78 E-value=2.2 Score=46.84 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC--CCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~--~~~~~---~~~~~~ 203 (883)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.... ..+...- .++.. ...++.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------ECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------eEecccccchhHHHHHHHHhCCC
Confidence 345788999999865 5566656554 444799999999988888653221 1121110 01100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~ 242 (883)
+|+|+-... . ...+..+.++|++| |++++..
T Consensus 262 ~D~vid~~g-----~---~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 262 VDFSFEVIG-----R---LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp BSEEEECSC-----C---HHHHHHHHHHBCTTTCEEEECS
T ss_pred CcEEEECCC-----C---HHHHHHHHHHhhcCCcEEEEec
Confidence 999976432 1 14577888999999 9988754
No 428
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=74.48 E-value=5.4 Score=46.12 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=46.7
Q ss_pred eEEEec-----C-eEEeeeeeccCCHHHHHHHHHhCCCCcccHHHHHHHhhcCCCCCcceeccHHHHHHHHhCCCCcccc
Q psy8372 779 YDLVLN-----G-NEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 779 ~Dlv~~-----G-~Ei~~Gs~R~~~~~~q~~~~~~~~~~~~~~~~~l~a~~~G~pPhgG~glGldRlvm~l~~~~sIRdv 852 (883)
.++.++ | .|||+.++ + .|++++ ..|++ +|...||||||||.|...+.++||+.
T Consensus 292 AeI~v~~~g~~gw~eIG~~Ge-V-HP~VLk----~~gId---------------~~v~aFELgLErL~m~~~~i~dIR~~ 350 (549)
T 2du7_A 292 TEVYAYHPKLGEWIEVATFGV-Y-SPIALA----KYNID---------------VPVMNLGLGVERLAMIIYGYEDVRAM 350 (549)
T ss_dssp EEEEECCSSSSCSEEEEEEEE-B-CHHHHH----HTTCC---------------SCEEEEEEBHHHHHHHHTTCSCSHHH
T ss_pred EEEEEecCCCCCcEEEEEEEE-E-CHHHHH----HcCCC---------------CCeEEEEEeHHHHHHHhcCCCccccc
Confidence 355554 5 67776663 4 466544 44553 24479999999999999999988866
Q ss_pred -----ccCCCCCCCCCCCCCCC-CCCC
Q psy8372 853 -----IAFPKGFGGKDHLSGAP-CDIP 873 (883)
Q Consensus 853 -----i~FPk~~~~~~~~~~~p-~~~~ 873 (883)
.-||.. -.|+-.-.| ..|+
T Consensus 351 ~~~dlsrFPav--~RDlAlvVd~~~Vp 375 (549)
T 2du7_A 351 VYPQFYEYRLS--DRDIAGMIRVDKVP 375 (549)
T ss_dssp HSSSSSCCCCC--HHHHHTTCCCSCCC
T ss_pred ccCCcccCCcc--cccEEEEEcHHhCC
Confidence 456653 344444455 5555
No 429
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=74.37 E-value=2.5 Score=46.42 Aligned_cols=98 Identities=12% Similarity=-0.024 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC--CCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~--~~~~~---~~~~~~ 203 (883)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.... ..+...- .++.. ...++.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT------DFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc------eEEeccccchhHHHHHHHHhCCC
Confidence 346788999999864 5566656654 444799999999988888753221 1121110 01100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~ 242 (883)
+|+|+-...- ...+..+.++|++| |++++..
T Consensus 263 ~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 263 VDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 8999864321 14677888999999 9988764
No 430
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=74.18 E-value=3.3 Score=44.85 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=57.0
Q ss_pred CCCeEEEEc-CC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEEE
Q psy8372 134 GKTRVLDVG-AG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVG-CG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlVv 208 (883)
++.+||=+| +| .|..+..+++....+|++++.++.-++.+++..... .+..+ .++.. ......+|+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------vi~~~-~~~~~~~~~~~~~g~Dvv~ 222 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADI------VLNHK-ESLLNQFKTQGIELVDYVF 222 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSE------EECTT-SCHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE------EEECC-ccHHHHHHHhCCCCccEEE
Confidence 678999994 43 355665555543337999999999888888743211 11111 01000 00124699988
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
.... -...+..+.++|+++|+++..
T Consensus 223 d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 223 CTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred ECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 6432 224677888999999998753
No 431
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=73.77 E-value=4.9 Score=44.60 Aligned_cols=100 Identities=15% Similarity=0.036 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
...++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++..... .+...-.++.. ......+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH------VIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE------EECTTTSCHHHHHHHHTTTCCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE------EEcCCCCCHHHHHHHHhCCCCC
Confidence 346788999999864 4555555554 5547999999999999887654321 12111111100 0001369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHh----ccCcEEEEEec
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQIL----NKNGIIIIKDN 243 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~L----KPGG~lvi~~~ 243 (883)
|+|+-... . ....+..+.++| ++||++++...
T Consensus 284 D~vid~~g-----~--~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 284 KLFLEATG-----V--PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp SEEEECSS-----C--HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CEEEECCC-----C--cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 99986432 1 112444455555 99999988653
No 432
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=73.55 E-value=5.9 Score=42.67 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC---CCC---CcCCCC
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD---FKP---EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~---~~~---~~~~~~ 203 (883)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++... .. ..+ |..+ +.. ....+.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g---~~--~~~--d~~~~~~~~~~~~~~~~~~ 225 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG---FD--DAF--NYKEESDLTAALKRCFPNG 225 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC---CS--EEE--ETTSCSCSHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC---Cc--eEE--ecCCHHHHHHHHHHHhCCC
Confidence 457889999997 56666666665433479999999988887764321 11 112 2211 100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+.... . ..+..+.++|++||++++..
T Consensus 226 ~d~vi~~~g-----~----~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 226 IDIYFENVG-----G----KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEEESSC-----H----HHHHHHHTTEEEEEEEEECC
T ss_pred CcEEEECCC-----H----HHHHHHHHHHhcCCEEEEEc
Confidence 899987542 1 36778889999999988754
No 433
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=73.51 E-value=2.2 Score=46.76 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC--CCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~--~~~~~---~~~~~~ 203 (883)
...++.+||-+|+|. |..+..+++. |...|+++|.++.-++.+++..... .+...- .++.. ...++.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------CINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------EECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce------EeccccccccHHHHHHHHhCCC
Confidence 346788999999864 5555555554 5547999999999988887643211 121110 01100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~ 242 (883)
+|+|+-...- ...+..+.++|+++ |++++..
T Consensus 261 ~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 261 VDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 9999864321 14577888999999 9988765
No 434
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=73.14 E-value=4.5 Score=44.49 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcCCC-ChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc---CCCC----CCCcCCC
Q psy8372 132 DPGKTRVLDVGAGI-GRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG---IQDF----KPEDLNI 202 (883)
Q Consensus 132 ~~~~~rVLDVGCGt-G~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d---~~~~----~~~~~~~ 202 (883)
..++.+||-+|+|. |..+..+++... .+|+++|.++.-++.+++.... ..+... -.++ .......
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD------LTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS------EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc------EEEeccccCcchHHHHHHHHhCCC
Confidence 45788999999663 555555665543 4799999999988888753221 122211 0010 0000012
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+-...- ...+..+.++|++||+++...
T Consensus 267 g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFILEATGD--------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 69999864321 135677889999999988764
No 435
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=72.61 E-value=2.1 Score=47.04 Aligned_cols=98 Identities=14% Similarity=-0.045 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC--CCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~--~~~~~---~~~~~~ 203 (883)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.... ..+...- .++.. ...++.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT------ECLNPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc------EEEecccccchHHHHHHHHhCCC
Confidence 345788999999864 5555555554 554799999999988888753221 1121110 01100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~ 242 (883)
+|+|+-...- ...+..+.++|+++ |++++..
T Consensus 262 ~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 262 VDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp BSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 9999864321 24677888999999 9988765
No 436
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=72.53 E-value=4.3 Score=43.28 Aligned_cols=90 Identities=21% Similarity=0.185 Sum_probs=57.1
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEE
Q psy8372 130 KSDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207 (883)
Q Consensus 130 ~~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlV 207 (883)
....++.+||=+|+|. |..+..+++. |. +|++++ |+.-++.+++..... .+ .|...+ ...+|+|
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~------v~-~d~~~v-----~~g~Dvv 203 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRH------LY-REPSQV-----TQKYFAI 203 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEE------EE-SSGGGC-----CSCEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCE------EE-cCHHHh-----CCCccEE
Confidence 3446789999999953 5666656554 55 799999 988888887743321 12 121222 3579999
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+-... . ..+..+.++|+|+|+++...
T Consensus 204 ~d~~g-----~----~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 204 FDAVN-----S----QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ECC----------------TTGGGEEEEEEEEEEC
T ss_pred EECCC-----c----hhHHHHHHHhcCCCEEEEEe
Confidence 75322 1 12255789999999988773
No 437
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=72.33 E-value=1.3 Score=48.90 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=61.6
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc--CCCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG--IQDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d--~~~~~~---~~~~~~ 203 (883)
...++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.|++.... ..+... -.++.. ...++.
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN------EFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------EEEccccCchhHHHHHHHhcCCC
Confidence 346788999999864 5666655554 554799999999988888754221 112111 011100 001237
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~~ 243 (883)
+|+|+-... . ...+..+.++|++| |++++...
T Consensus 264 ~D~vid~~g-----~---~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 264 VDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp BSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----C---HHHHHHHHHHhhccCCEEEEEcc
Confidence 999986432 1 24678889999997 99888654
No 438
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=72.28 E-value=5.5 Score=37.00 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=56.1
Q ss_pred CCeEEEEcCCC-ChH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEEEc
Q psy8372 135 KTRVLDVGAGI-GRI-SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIWIQ 210 (883)
Q Consensus 135 ~~rVLDVGCGt-G~~-~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVvs~ 210 (883)
..+|+=+|||. |.. +..|...|. .|+++|.++..++.+++. ...++.+|..+.... ..-..+|+|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-------GVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-------CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 35799999975 332 333333455 499999999988877652 124567776543210 001368888764
Q ss_pred ccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 211 WVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 211 ~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. +++.....+....+.+.|+..++...
T Consensus 79 ~-----~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 79 I-----PNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp C-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred C-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3 22222233445667778888766655
No 439
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=72.07 E-value=4.5 Score=43.69 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCC-CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC----cCCCCccEE
Q psy8372 133 PGKTRVLDVGAG-IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE----DLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCG-tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~FDlV 207 (883)
.++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++... . .. .|..+.... ...+.+|+|
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa----~--~~--~d~~~~~~~~~~~~~~~~~d~v 234 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA----D--LV--VNPLKEDAAKFMKEKVGGVHAA 234 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC----S--EE--ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC----C--EE--ecCCCccHHHHHHHHhCCCCEE
Confidence 578899999996 3555655555433379999999998888865221 1 11 122211100 000368998
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+..... ...++.+.++|++||+++...
T Consensus 235 id~~g~--------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 235 VVTAVS--------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 864321 146678889999999988754
No 440
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=70.96 E-value=2.5 Score=46.46 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC--CCCCC---CcCCCC
Q psy8372 131 SDPGKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI--QDFKP---EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~--~~~~~---~~~~~~ 203 (883)
...++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.... ..+...- .++.. ...++.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------~vi~~~~~~~~~~~~v~~~~~~g 265 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------DCLNPRELDKPVQDVITELTAGG 265 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------EEEccccccchHHHHHHHHhCCC
Confidence 346788999999864 5566656654 444799999999988888653221 1111110 01100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccC-cEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKN-GIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPG-G~lvi~~ 242 (883)
+|+|+-... . ...+..+.++|++| |++++..
T Consensus 266 ~Dvvid~~G-----~---~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 266 VDYSLDCAG-----T---AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp BSEEEESSC-----C---HHHHHHHHHTBCTTTCEEEECC
T ss_pred ccEEEECCC-----C---HHHHHHHHHHhhcCCCEEEEEC
Confidence 899976432 1 24677889999999 9988765
No 441
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=70.71 E-value=8.7 Score=41.70 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=58.6
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
...++.+||-.|+ |.|..+..++.....+|++++.++.-++.+++... . ..+...-.++.. ......+
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga----~--~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----H--EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----S--EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC----C--EEEeCCCchHHHHHHHHcCCCCc
Confidence 3457889999997 45555555555433469999999988887654321 1 112111111100 0001369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+.+.. . ..+..+.++|++||++++..
T Consensus 241 D~vi~~~G-----~----~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLA-----N----VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCH-----H----HHHHHHHHHEEEEEEEEECC
T ss_pred EEEEECCC-----h----HHHHHHHHhccCCCEEEEEe
Confidence 99987542 1 24667889999999988764
No 442
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=70.00 E-value=8.9 Score=40.82 Aligned_cols=91 Identities=15% Similarity=-0.015 Sum_probs=57.8
Q ss_pred eEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccccc
Q psy8372 137 RVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLM 214 (883)
Q Consensus 137 rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~ 214 (883)
+||=.|+ |.|..+..+++....+|++++.|+.-++.+++..... .+...-.+.......+.+|+|+-..
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------vi~~~~~~~~~~~~~~~~d~v~d~~--- 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANR------ILSRDEFAESRPLEKQLWAGAIDTV--- 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSE------EEEGGGSSCCCSSCCCCEEEEEESS---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE------EEecCCHHHHHhhcCCCccEEEECC---
Confidence 4999987 5567777666653337999999999989887643221 1211111111111124799887532
Q ss_pred ccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 215 FILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 215 hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.. ..+..+.++|+|+|+++...
T Consensus 220 --g~----~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 220 --GD----KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp --CH----HHHHHHHHTEEEEEEEEECC
T ss_pred --Cc----HHHHHHHHHHhcCCEEEEEe
Confidence 22 27788899999999998765
No 443
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=69.22 E-value=2 Score=46.59 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC---CCC---CcCCCC
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD---FKP---EDLNIK 203 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~---~~~---~~~~~~ 203 (883)
..++.+||-+|+ |.|..+..++.....+|+++|.++..++.+++... . ..+ |..+ +.. ....+.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~----~--~~~--d~~~~~~~~~~~~~~~~~~ 238 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG----E--VFI--DFTKEKDIVGAVLKATDGG 238 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC----C--EEE--ETTTCSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC----c--eEE--ecCccHhHHHHHHHHhCCC
Confidence 357889999998 45666665655433379999999888777765211 1 112 3221 100 000126
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+|+..... ...++.+.++|++||++++..
T Consensus 239 ~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 239 AHGVINVSVS--------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEEEECSSC--------HHHHHHHTTSEEEEEEEEECC
T ss_pred CCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEe
Confidence 8999875431 246788889999999988764
No 444
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=68.71 E-value=53 Score=29.37 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCChHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYL----LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l----~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlV 207 (883)
.+++|+=+|||. .+..+ ...+. +|+++|.++..++.+++... ..++..|..+.... ..-..+|+|
T Consensus 3 ~~m~i~IiG~G~--iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~------~~~~~~d~~~~~~l~~~~~~~~d~v 73 (140)
T 1lss_A 3 HGMYIIIAGIGR--VGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEID------ALVINGDCTKIKTLEDAGIEDADMY 73 (140)
T ss_dssp --CEEEEECCSH--HHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCS------SEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcC------cEEEEcCCCCHHHHHHcCcccCCEE
Confidence 357899998854 44333 33444 59999999887765543211 13455554332100 001368988
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+... ++......+..+.+.+.++ .+++.
T Consensus 74 i~~~-----~~~~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 74 IAVT-----GKEEVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp EECC-----SCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred EEee-----CCchHHHHHHHHHHHcCCC-EEEEE
Confidence 8753 2222334555566667775 55443
No 445
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=68.64 E-value=21 Score=36.49 Aligned_cols=109 Identities=6% Similarity=-0.022 Sum_probs=66.8
Q ss_pred CCCeEEEEcCC--CCh---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--------C
Q psy8372 134 GKTRVLDVGAG--IGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 200 (883)
Q Consensus 134 ~~~rVLDVGCG--tG~---~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--------~ 200 (883)
.+.++|=.|++ .|. ++..+++.|.. |+.++.++...+.+.+.........+.++.+|+.+..... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 46689999976 333 45556666765 8899888766666655554433335678899988753210 0
Q ss_pred CCCccEEEEcccccc----------cChHHHH-----------HHHHHHHHHhccCcEEEEEec
Q psy8372 201 NIKYDVIWIQWVLMF----------ILDEDII-----------KFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 201 ~~~FDlVvs~~vL~h----------l~ded~~-----------~~l~~~~r~LKPGG~lvi~~~ 243 (883)
-+..|+++.+..+.+ .+.++.. .+++.+...++++|.++....
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 136899888665432 2222222 245566667777888777653
No 446
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=68.40 E-value=1.8 Score=46.97 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
...++.+||-.|| |.|..+..+++....+|++++.++.-++.+++.... ..+..+ .++.. ......+
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD------IVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------EEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------EEecCc-hhHHHHHHHHhCCCCc
Confidence 3467889999997 456666666665434799999999888888764321 122222 11110 0001369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+....- ..+..+.++|++||++++..
T Consensus 229 Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 229 DMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred eEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 999875432 24567888999999988765
No 447
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=68.01 E-value=4.5 Score=43.73 Aligned_cols=94 Identities=15% Similarity=0.022 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC---cCCCCccEEE
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE---DLNIKYDVIW 208 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~FDlVv 208 (883)
++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++. .. ..+...-.++... .....+|+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------~v~~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------RLVNPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------EEECTTTSCHHHHHHHHHSSCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------hccCcCccCHHHHHHHhcCCCCCEEE
Confidence 788999999853 5555555554 553699999998877766543 11 1111111111000 0023689998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.... . ...++.+.++|+++|++++..
T Consensus 237 d~~g-----~---~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 237 EFSG-----N---EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp ECSC-----C---HHHHHHHHHHEEEEEEEEECC
T ss_pred ECCC-----C---HHHHHHHHHHHhcCCEEEEEe
Confidence 6432 1 145678889999999988764
No 448
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=68.01 E-value=11 Score=40.54 Aligned_cols=95 Identities=12% Similarity=-0.052 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCC
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNI 202 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 202 (883)
...++.+||-.|+ |.|..+..++.....+|+++|.++..++.+++... . ..+ |..+... .....
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga----~--~~~--d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA----D--ETV--NYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC----S--EEE--ETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC----C--EEE--cCCcccHHHHHHHHhCCC
Confidence 3457889999998 56777666665433379999999998888865321 1 112 2211100 00013
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.... . ..+..+.++|+++|+++...
T Consensus 235 ~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 235 GADKVVDHTG-A--------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp CEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESS
T ss_pred CceEEEECCC-H--------HHHHHHHHhhccCCEEEEEe
Confidence 6999987653 1 24566788999999988754
No 449
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=67.50 E-value=4 Score=44.45 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=55.2
Q ss_pred CeEEEEcCCC-ChHH-HHHH-Hh-CCCeEEEEeCCHH---HHHHHHHHHhhccCCCccEEEccCCC--CCC-CcCCCCcc
Q psy8372 136 TRVLDVGAGI-GRIS-KYLL-AK-HFDKIDLLEQSSK---FIEQAKEEILKDCDKLDKCYNVGIQD--FKP-EDLNIKYD 205 (883)
Q Consensus 136 ~rVLDVGCGt-G~~~-~~l~-~~-g~~~V~gvD~S~~---~le~A~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~~~FD 205 (883)
.+||-+|+|. |.++ ..++ +. |..+|+++|.++. -++.+++.... .+ |..+ +.. ....+.+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~-------~v--~~~~~~~~~i~~~~gg~D 244 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT-------YV--DSRQTPVEDVPDVYEQMD 244 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE-------EE--ETTTSCGGGHHHHSCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc-------cc--CCCccCHHHHHHhCCCCC
Confidence 8999999843 4455 5555 33 4435999999987 78887653221 11 2111 100 00013689
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+-... . ...+..+.++|++||+++....
T Consensus 245 vvid~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 245 FIYEATG-----F---PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----C---hHHHHHHHHHHhcCCEEEEEeC
Confidence 9875432 1 1357788899999999887653
No 450
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=66.41 E-value=2.6 Score=45.46 Aligned_cols=97 Identities=16% Similarity=0.073 Sum_probs=60.0
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
...++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.... ..+...-.++.. ......+
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE------YLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------EEEeCCCchHHHHHHHHhCCCCc
Confidence 3467889999995 455666656655334799999999988877663211 122211111100 0002369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+....- ..+..+.++|++||++++..
T Consensus 219 D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 999875431 24667888999999988865
No 451
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=65.50 E-value=2.6 Score=45.23 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=60.4
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCC
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIK 203 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~ 203 (883)
...++.+||-.|+ |.|..+..+++. |. +|++++.++.-++.+++.... ..+...-.++.. ......
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~------~~~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAW------ETIDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC------EEEeCCCccHHHHHHHHhCCCC
Confidence 3467889999983 456666656554 55 699999999988888764321 112211111100 000136
Q ss_pred ccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 204 FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+|+....- ..+..+.++|++||++++...
T Consensus 210 ~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 210 CPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred ceEEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence 9999875431 245667889999999988753
No 452
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.36 E-value=32 Score=33.04 Aligned_cols=94 Identities=17% Similarity=0.011 Sum_probs=52.8
Q ss_pred CCeEEEEcCCC-Ch-HHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CC-cCCCCccEE
Q psy8372 135 KTRVLDVGAGI-GR-ISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PE-DLNIKYDVI 207 (883)
Q Consensus 135 ~~rVLDVGCGt-G~-~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~~~FDlV 207 (883)
+++|+=+|||. |. ++..+... |.. |+++|.++..++.+++.. ...+.+|..+.. .. . -..+|+|
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~~g-------~~~~~gd~~~~~~l~~~~~-~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRSEG-------RNVISGDATDPDFWERILD-TGHVKLV 109 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHHTT-------CCEEECCTTCHHHHHTBCS-CCCCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHHCC-------CCEEEcCCCCHHHHHhccC-CCCCCEE
Confidence 56899999864 32 23333345 655 999999998877665421 234555554321 11 1 1368988
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+... ++......+-.+.+.+.|++.++...
T Consensus 110 i~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 110 LLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp EECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 8732 22222233334556666777777654
No 453
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=65.11 E-value=35 Score=37.38 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
.+.+||.++.+.|.++..++.. . ++.+.-|-......+.++..++.....+...+..+ .....||+|+....
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~--~-~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH--K-PYSIGDSYISELATRENLRLNGIDESSVKFLDSTA----DYPQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG--C-CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS----CCCSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC--C-ceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc----ccccCCCEEEEEcC-
Confidence 4468999999999999766543 2 45554366555566666665543321122222222 11257999987443
Q ss_pred cccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
.+. ..+...|..+...|+||+.+++...
T Consensus 110 k~~--~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 110 KTL--ALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp SCH--HHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred CCH--HHHHHHHHHHHhhCCCCCEEEEEec
Confidence 222 4477888999999999999977663
No 454
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=64.78 E-value=39 Score=30.81 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCChHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEEE
Q psy8372 135 KTRVLDVGAGIGRISKYL----LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVIW 208 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l----~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlVv 208 (883)
..+|+=+|||. ++..+ ...|.. |+++|.++..++.+++.. ..++.+|..+.... ..-..+|+|+
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~~~-------~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKK-VLAVDKSKEKIELLEDEG-------FDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTT-------CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHCC-------CcEEECCCCCHHHHHhCCcccCCEEE
Confidence 45799999964 44333 344554 999999998877765421 24567776553210 0013689888
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
...- +.+....+....+.+. .+.++...
T Consensus 76 ~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 76 ITGS-----DDEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp ECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred EecC-----CHHHHHHHHHHHHHhC-CceEEEEE
Confidence 7432 2223334444555555 55555544
No 455
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=64.41 E-value=19 Score=39.97 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC------CC--eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCc
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH------FD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKY 204 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g------~~--~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~F 204 (883)
+..-+|+|+|+|.|.++..++... +. +++.||+|+...+.-++++... ..+.+. .++.+++. ..
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~-~~l~~lp~-----~~ 150 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH-DSFEDVPE-----GP 150 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE-SSGGGSCC-----SS
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEe-CChhhcCC-----CC
Confidence 344579999999999988887531 12 7999999998887655554322 122211 22233321 23
Q ss_pred cEEEEcccccccCh
Q psy8372 205 DVIWIQWVLMFILD 218 (883)
Q Consensus 205 DlVvs~~vL~hl~d 218 (883)
=+|+++.+|.-+|-
T Consensus 151 ~~viANE~fDAlPv 164 (387)
T 1zkd_A 151 AVILANEYFDVLPI 164 (387)
T ss_dssp EEEEEESSGGGSCC
T ss_pred eEEEeccccccCce
Confidence 46777887776653
No 456
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=63.36 E-value=4.3 Score=43.81 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=39.3
Q ss_pred ccEEEccCCCCCCCcCCCCccEEEEcccccccC------------hHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 185 DKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL------------DEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 185 ~~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl~------------ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..++++|..+....-.+++||+|++..-..... ...+...+.+++++|||||.+++..
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 456777765532211136899999976542211 0236788999999999999999976
No 457
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=62.74 E-value=4.6 Score=44.14 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCCCCeEEEEc--CCCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccE
Q psy8372 132 DPGKTRVLDVG--AGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDV 206 (883)
Q Consensus 132 ~~~~~rVLDVG--CGtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDl 206 (883)
..++.+||-.| .|.|..+..+++....+|++++.++.-++.+++... . ..+..+-.++.. ......+|+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga----~--~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC----D--RPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----S--EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC----c--EEEecCChhHHHHHHHhcCCCCCE
Confidence 35788999999 456777766665533379999999888888775321 1 112211111100 000136899
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+.... . ..+..+.++|+++|++++..
T Consensus 235 vid~~g-----~----~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 235 VYESVG-----G----AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEECSC-----T----HHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC-----H----HHHHHHHHHHhcCCEEEEEe
Confidence 986543 1 36678889999999988765
No 458
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=62.70 E-value=5.8 Score=42.71 Aligned_cols=97 Identities=11% Similarity=-0.078 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcCCCCh-HHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC----CCcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGIGR-ISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~-~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~FD 205 (883)
..++.+||=+|+|.+. ++..+++ .+..+|+++|.+++-++.+++..... .+...-.++. .......+|
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~------~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV------TINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE------EEEC-CCCHHHHHHHHTTSSCEE
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE------EEeCCCCCHHHHhhhhcCCCCce
Confidence 3678899999998754 3433444 35568999999998888877654321 1211111110 000012466
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++.... -...+..+.++|+++|.+++..
T Consensus 235 ~~~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 235 SAIVCAV--------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEECCS--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEEecc--------CcchhheeheeecCCceEEEEe
Confidence 6654322 1246778889999999988765
No 459
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=60.78 E-value=4.4 Score=43.37 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCC
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLN 201 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~-~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~ 201 (883)
...++.+||-.|+ |.|..+..++. .|. +|+++|.++..++.+++... . ..+ |..+... ....
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~----~--~~~--~~~~~~~~~~~~~~~~~ 207 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGA----W--QVI--NYREEDLVERLKEITGG 207 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC----S--EEE--ETTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC----C--EEE--ECCCccHHHHHHHHhCC
Confidence 3457889999994 45555555554 455 69999999988888876321 1 112 2211110 0001
Q ss_pred CCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 202 IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 202 ~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
..+|+|+.+.. . ..++.+.++|++||++++..
T Consensus 208 ~~~D~vi~~~g-----~----~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 208 KKVRVVYDSVG-----R----DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CCEEEEEECSC-----G----GGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCc-----h----HHHHHHHHHhcCCCEEEEEe
Confidence 36999987643 1 34677889999999988765
No 460
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=60.41 E-value=41 Score=37.45 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCChHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCC--cCCCCccEE
Q psy8372 134 GKTRVLDVGAGIGRISKYL----LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE--DLNIKYDVI 207 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l----~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~FDlV 207 (883)
..++|+=+|||. ++..+ ...|.. |+++|.++..++.+++.. ..++.+|..+.... ..-...|+|
T Consensus 3 ~~~~viIiG~Gr--~G~~va~~L~~~g~~-vvvId~d~~~v~~~~~~g-------~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 3 HGMRVIIAGFGR--FGQITGRLLLSSGVK-MVVLDHDPDHIETLRKFG-------MKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp -CCSEEEECCSH--HHHHHHHHHHHTTCC-EEEEECCHHHHHHHHHTT-------CCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CCCeEEEECCCH--HHHHHHHHHHHCCCC-EEEEECCHHHHHHHHhCC-------CeEEEcCCCCHHHHHhcCCCccCEE
Confidence 345789899865 43333 234554 999999999998887431 24577887764211 001468888
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.. +++.....+....+.+.|...++...
T Consensus 73 iv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 73 INAI-----DDPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp EECC-----SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EECC-----CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 7743 23334566677778888888877766
No 461
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=60.31 E-value=12 Score=40.41 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=57.9
Q ss_pred CCC--CeEEEEcC--CCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-----CcCCC
Q psy8372 133 PGK--TRVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP-----EDLNI 202 (883)
Q Consensus 133 ~~~--~rVLDVGC--GtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~ 202 (883)
.++ .+||-.|| |.|..+..++.. |..+|+++|.++.-++.+++... .. ..+ |..+... ....+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g---~~--~~~--d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG---FD--AAI--NYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC---CS--EEE--ETTTSCHHHHHHHHCTT
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---Cc--eEE--ecCchHHHHHHHHhcCC
Confidence 567 89999998 455555555554 55379999999887777765221 11 112 2221110 00012
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.+.. . ..+..+.++|++||++++..
T Consensus 230 ~~d~vi~~~G-----~----~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 230 GVDVYFDNVG-----G----NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CEEEEEESCC-----H----HHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECCC-----H----HHHHHHHHHhccCcEEEEEC
Confidence 6899887543 1 45778889999999988764
No 462
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=60.27 E-value=18 Score=40.70 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=35.8
Q ss_pred CCeEEEEcCCCChHHHHHHHh----C--CCeEEEEeCCHHHHHHHHHHHhh
Q psy8372 135 KTRVLDVGAGIGRISKYLLAK----H--FDKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~----g--~~~V~gvD~S~~~le~A~~~~~~ 179 (883)
..+|+|+|+|+|.++..++.. + ..+++.||+|+.+.+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 469999999999998888753 1 23799999999988877776654
No 463
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=60.13 E-value=13 Score=41.34 Aligned_cols=45 Identities=22% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCChHHHHHHHhC--CCe----EEEEeCCHHHHHHHHHHHhh
Q psy8372 135 KTRVLDVGAGIGRISKYLLAKH--FDK----IDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 135 ~~rVLDVGCGtG~~~~~l~~~g--~~~----V~gvD~S~~~le~A~~~~~~ 179 (883)
..+|||+-||.|.....+...| +.. |.++|+++.+++.-+.+...
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 3589999999999998887777 344 78899999999988887754
No 464
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=59.65 E-value=5.5 Score=43.27 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=58.3
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC----CCcCCCCc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK----PEDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~F 204 (883)
...++.+||-.|+ |.|..+..++.....+|+++|.++..++.+++.... ..+..+..++. .......+
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA------AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc------EEEecCChHHHHHHHHHhcCCCc
Confidence 3457889999984 456655555554334699999999888888543211 11211111110 00001369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+.+..- ..+..+.++|++||++++..
T Consensus 233 d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 233 NLILDCIGG---------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp EEEEESSCG---------GGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCCc---------hHHHHHHHhccCCCEEEEEe
Confidence 999875432 13566788999999988765
No 465
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=58.97 E-value=7.2 Score=41.94 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcCCCCh-HHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCcc
Q psy8372 132 DPGKTRVLDVGAGIGR-ISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKYD 205 (883)
Q Consensus 132 ~~~~~rVLDVGCGtG~-~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~FD 205 (883)
..++.+||=.|+|... ++..+++. |...++++|.++.-++.|++..... .+...-.+... ......+|
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~------~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ------TFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE------EEETTTSCHHHHHHHHGGGCSSE
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeE------EEeCCCCCHHHHHHhhcccCCcc
Confidence 4578899999987543 34444443 5557789999999888887654321 12111111100 00013578
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEec
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
+|+.... ....+..+.++|++||.+++...
T Consensus 232 ~v~d~~G--------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 232 LILETAG--------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp EEEECSC--------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred ccccccc--------ccchhhhhhheecCCeEEEEEec
Confidence 8765432 12467778899999999988653
No 466
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=58.95 E-value=3.5 Score=43.66 Aligned_cols=93 Identities=9% Similarity=-0.060 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccC-CCCCCCcCCCCccEEE
Q psy8372 132 DPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI-QDFKPEDLNIKYDVIW 208 (883)
Q Consensus 132 ~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~FDlVv 208 (883)
..++.+||-+|+ |.|..+..+++....+|+++|.++..++.+++... . ..+...- .++...- +.+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga----~--~~~~~~~~~~~~~~~--~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA----E--EAATYAEVPERAKAW--GGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC----S--EEEEGGGHHHHHHHT--TSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC----C--EEEECCcchhHHHHh--cCceEEE
Confidence 357889999998 45666666665433479999999888887765221 1 1122110 1110000 3689998
Q ss_pred EcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 209 IQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 209 s~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
. ..- ..+..+.++|+++|+++...
T Consensus 195 d-~g~---------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 195 E-VRG---------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp E-CSC---------TTHHHHHTTEEEEEEEEEC-
T ss_pred E-CCH---------HHHHHHHHhhccCCEEEEEe
Confidence 7 321 24567888999999988754
No 467
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=58.93 E-value=21 Score=40.12 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC------------
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK------------ 196 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~------------ 196 (883)
...++.+||=+|+ |.|..+..+++....++++++.++.-++.+++..... .+...-.++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~------vi~~~~~d~~~~~~~~~~~~~~ 298 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEA------IIDRNAEGYRFWKDENTQDPKE 298 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCE------EEETTTTTCCSEEETTEECHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcE------EEecCcCcccccccccccchHH
Confidence 3467889999997 4566666666654446889999999888887643211 1211111110
Q ss_pred ---------CCcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 197 ---------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 197 ---------~~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.......+|+|+-... . ..+..+.++|++||.+++..
T Consensus 299 ~~~~~~~i~~~t~g~g~Dvvid~~G-----~----~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 299 WKRFGKRIRELTGGEDIDIVFEHPG-----R----ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECSC-----H----HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEcCC-----c----hhHHHHHHHhhCCcEEEEEe
Confidence 0000137998876432 1 46777889999999988754
No 468
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=57.09 E-value=7.8 Score=41.47 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=56.7
Q ss_pred CCCC-eEEEEcC--CCChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEc-cC-CCCCCCcCCCCccE
Q psy8372 133 PGKT-RVLDVGA--GIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV-GI-QDFKPEDLNIKYDV 206 (883)
Q Consensus 133 ~~~~-rVLDVGC--GtG~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~FDl 206 (883)
.++. +||-.|| |.|..+..+++. |. +|++++.++.-++.+++.... ..+.. +. .+.......+.+|+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~------~v~~~~~~~~~~~~~~~~~~~d~ 220 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGAS------EVISREDVYDGTLKALSKQQWQG 220 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCS------EEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCc------EEEECCCchHHHHHHhhcCCccE
Confidence 4454 8999997 455566555554 55 599999998888888653221 11211 10 11001111246899
Q ss_pred EEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 207 Vvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+.... . ..+..+.++|++||++++..
T Consensus 221 vid~~g-----~----~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 221 AVDPVG-----G----KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEESCC-----T----HHHHHHHTTEEEEEEEEECC
T ss_pred EEECCc-----H----HHHHHHHHhhcCCCEEEEEe
Confidence 876432 1 25677889999999988764
No 469
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=56.66 E-value=5.7 Score=43.16 Aligned_cols=97 Identities=20% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCcc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYD 205 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FD 205 (883)
...++.+||-.|+ |.|..+..+++....+|+++|.++.-++.+++.... ..+...-.++.. ......+|
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK------RGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------EEEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------EEEeCCchHHHHHHHHHhCCCce
Confidence 3467889999953 356666666655434799999999998888764321 112211111100 00024699
Q ss_pred EEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+|+....- ..+..+.++|++||.+++..
T Consensus 238 vvid~~g~---------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 238 IILDMIGA---------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEESCCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCCH---------HHHHHHHHHhccCCEEEEEE
Confidence 99875431 24566788999999988765
No 470
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=55.87 E-value=22 Score=42.95 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHh
Q psy8372 133 PGKTRVLDVGAGIGRISKYLLAKH------FDKIDLLEQSSKFIEQAKEEIL 178 (883)
Q Consensus 133 ~~~~rVLDVGCGtG~~~~~l~~~g------~~~V~gvD~S~~~le~A~~~~~ 178 (883)
.+..+|||+=||.|.++.-+...| +..+.++|+++.+++.-+.+..
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence 345789999999999988776665 5568899999999999888764
No 471
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=55.76 E-value=7.8 Score=41.41 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCC-eEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEcc-C-CCCCCCcCCCCccEE
Q psy8372 133 PGKT-RVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-I-QDFKPEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~-rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d-~-~~~~~~~~~~~FDlV 207 (883)
.++. +||-+|+ |.|..+..+++....+|++++.++.-++.+++.... ..+... . .+.......+.+|+|
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~------~~i~~~~~~~~~~~~~~~~~~d~v 220 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK------EVLAREDVMAERIRPLDKQRWAAA 220 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS------EEEECC---------CCSCCEEEE
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc------EEEecCCcHHHHHHHhcCCcccEE
Confidence 4454 8999997 556666666654333699999998888887653211 111111 0 000000012469998
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+-... . ..+..+.++|++||++++..
T Consensus 221 id~~g-----~----~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 221 VDPVG-----G----RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EECST-----T----TTHHHHHHTEEEEEEEEECS
T ss_pred EECCc-----H----HHHHHHHHhhccCCEEEEEe
Confidence 76432 1 24566788999999988764
No 472
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=55.61 E-value=5.7 Score=42.94 Aligned_cols=94 Identities=10% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC----CcCCCCc
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----EDLNIKY 204 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~F 204 (883)
...++.+||-+|+ |.|..+..+++....+|+++ .++.-++.+++... ..+. +..++.. ......+
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa-------~~i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGA-------TPID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTS-------EEEE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCC-------CEec-cCCCHHHHHHHHhcCCCc
Confidence 4467889999994 34666666666543469999 78888888766432 1121 1111100 0002369
Q ss_pred cEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 205 DVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 205 DlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
|+|+-... . ..+..+.++|+++|.+++..
T Consensus 218 D~vid~~g-----~----~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 218 DLVYDTLG-----G----PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEEEESSC-----T----HHHHHHHHHEEEEEEEEESC
T ss_pred eEEEECCC-----c----HHHHHHHHHHhcCCeEEEEc
Confidence 99886432 1 35677888999999988754
No 473
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=55.28 E-value=16 Score=45.53 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHhh
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILK 179 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-~~V~gvD~S~~~le~A~~~~~~ 179 (883)
...+++|+=||.|.++.-+...|+ ..+.++|+++.+++..+.+...
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~ 585 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG 585 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 456899999999999998888887 5688999999999988877653
No 474
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=55.05 E-value=20 Score=38.93 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCeEEEEcCCC-ChHHHHHHH-hCCCeEEEEeCCH---HHHHHHHHHHhhccCCCccEEEccCCCCCCCc----CCCCcc
Q psy8372 135 KTRVLDVGAGI-GRISKYLLA-KHFDKIDLLEQSS---KFIEQAKEEILKDCDKLDKCYNVGIQDFKPED----LNIKYD 205 (883)
Q Consensus 135 ~~rVLDVGCGt-G~~~~~l~~-~g~~~V~gvD~S~---~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~FD 205 (883)
+.+||-+|+|. |..+..+++ .|. +|+++|.++ .-++.+++... ..+ | .+ .... ..+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga-------~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKT-------NYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTC-------EEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCC-------cee--c-hH-HHHHHHHHhCCCCC
Confidence 78999999832 334444443 355 799999987 77777765322 112 2 22 1110 013699
Q ss_pred EEEEcccccccChHHHHHHH-HHHHHHhccCcEEEEEe
Q psy8372 206 VIWIQWVLMFILDEDIIKFL-NLCKQILNKNGIIIIKD 242 (883)
Q Consensus 206 lVvs~~vL~hl~ded~~~~l-~~~~r~LKPGG~lvi~~ 242 (883)
+|+...... ..+ +.+.++|+++|.+++..
T Consensus 249 ~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 249 VIIDATGAD--------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEECCCCC--------THHHHHHGGGEEEEEEEEECS
T ss_pred EEEECCCCh--------HHHHHHHHHHHhcCCEEEEEe
Confidence 998754321 245 77889999999988765
No 475
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=54.07 E-value=19 Score=38.43 Aligned_cols=95 Identities=14% Similarity=-0.040 Sum_probs=59.2
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC------CcCCC
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP------EDLNI 202 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~ 202 (883)
...++.+||-.|+ |.|..+..++.....+|+++|.++..++.+++... . ..+ |..+... .....
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~----~--~~~--d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC----H--HTI--NYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC----S--EEE--ETTTSCHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----C--EEE--ECCCHHHHHHHHHHhCCC
Confidence 3457889999995 56666665655433479999999988888765321 1 112 2211110 00013
Q ss_pred CccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.+|+|+.+..- ..++.+.++|++||+++...
T Consensus 214 ~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 214 GVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CEEEEEECSCT---------TTHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence 68999875431 24567889999999987765
No 476
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=53.34 E-value=9.5 Score=41.61 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC-CCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK-PEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~FDlVvs~~ 211 (883)
++.+||=+|+|. |..+..+++....+|++++.++.-++.+++.+.. . ..+. ..+.. .....+.+|+|+...
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa---~--~v~~--~~~~~~~~~~~~~~D~vid~~ 259 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA---D--SFLV--SRDQEQMQAAAGTLDGIIDTV 259 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC---S--EEEE--TTCHHHHHHTTTCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---c--eEEe--ccCHHHHHHhhCCCCEEEECC
Confidence 678999999753 4444444444333699999998877776643221 1 1121 11100 000013689998654
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.... .++.+.++|+++|+++...
T Consensus 260 g~~~--------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 260 SAVH--------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp SSCC--------CSHHHHHHEEEEEEEEECC
T ss_pred CcHH--------HHHHHHHHHhcCCEEEEEc
Confidence 3221 2345678899999988764
No 477
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=53.16 E-value=25 Score=37.29 Aligned_cols=93 Identities=16% Similarity=0.058 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEc-C-CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCC-CCCCcCCCCccEE
Q psy8372 131 SDPGKTRVLDVG-A-GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD-FKPEDLNIKYDVI 207 (883)
Q Consensus 131 ~~~~~~rVLDVG-C-GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~FDlV 207 (883)
...++.+||=+| + |.|..+..+++....+|++++ ++.-++.+++.... ..+...-.+ +... -..+|+|
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~------~~i~~~~~~~~~~~--~~g~D~v 219 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE------QCINYHEEDFLLAI--STPVDAV 219 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS------EEEETTTSCHHHHC--CSCEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC------EEEeCCCcchhhhh--ccCCCEE
Confidence 346788999886 3 346666666665444788887 55546776654321 122221111 1111 1368998
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEE
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~ 241 (883)
+-... . ..+..+.++|++||+++..
T Consensus 220 ~d~~g-----~----~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 220 IDLVG-----G----DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EESSC-----H----HHHHHHGGGEEEEEEEEEC
T ss_pred EECCC-----c----HHHHHHHHhccCCCEEEEe
Confidence 76432 2 2237788999999998875
No 478
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=52.77 E-value=70 Score=34.00 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCeEEEEcCCC-C-hHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 135 KTRVLDVGAGI-G-RISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 135 ~~rVLDVGCGt-G-~~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
.++|.=||+|. | .++..+...|.. +|+++|.++..++.+.+... ......+..+. .. ...|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~------~~~~~~~~~~~--~~--~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------IDEGTTSIAKV--ED--FSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------CSEEESCTTGG--GG--GCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC------cchhcCCHHHH--hh--ccCCEEEEeC
Confidence 36899999874 2 345555556663 69999999988877754311 11122222220 01 3579988743
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEE
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~l 238 (883)
+......+++++...|+||..+
T Consensus 103 -----p~~~~~~vl~~l~~~l~~~~iv 124 (314)
T 3ggo_A 103 -----PVRTFREIAKKLSYILSEDATV 124 (314)
T ss_dssp -----CGGGHHHHHHHHHHHSCTTCEE
T ss_pred -----CHHHHHHHHHHHhhccCCCcEE
Confidence 3333567888888889887654
No 479
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=52.66 E-value=92 Score=31.70 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=46.2
Q ss_pred CeEEEEcCCCChHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 136 TRVLDVGAGIGRISKYLLAK----HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 136 ~rVLDVGCGtG~~~~~l~~~----g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++||=.|| |.++..++.. |+ +|++++-++...+.... ..++++.+|+.++. . ..+|+|+...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~---~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-L---DGVTHLLIST 71 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-C---TTCCEEEECC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc-c---CCCCEEEECC
Confidence 58999995 8887776653 44 69999988765443322 23478889988865 2 4789999876
Q ss_pred ccccc
Q psy8372 212 VLMFI 216 (883)
Q Consensus 212 vL~hl 216 (883)
.....
T Consensus 72 ~~~~~ 76 (286)
T 3ius_A 72 APDSG 76 (286)
T ss_dssp CCBTT
T ss_pred Ccccc
Confidence 55443
No 480
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=50.20 E-value=69 Score=38.04 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHhCC-------CeEEEEeCC-HHHHHHHHHHHhhcc------------------------
Q psy8372 134 GKTRVLDVGAGIGRISKYLLAKHF-------DKIDLLEQS-SKFIEQAKEEILKDC------------------------ 181 (883)
Q Consensus 134 ~~~rVLDVGCGtG~~~~~l~~~g~-------~~V~gvD~S-~~~le~A~~~~~~~~------------------------ 181 (883)
+...|+-+|||.=.....+..... ..+..+|++ |..++.=++.+....
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 356799999999888877755422 234444444 333333333332110
Q ss_pred CCCccEEEccCCCCCC-------Cc--CCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEecc
Q psy8372 182 DKLDKCYNVGIQDFKP-------ED--LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244 (883)
Q Consensus 182 ~~~~~~~~~d~~~~~~-------~~--~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~~~ 244 (883)
......+.+|+.+... .. ..+.-=++++-.+|.+++.++..++|+.+.+. |+|.+++.+..
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~ 256 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQL 256 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEEC
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEee
Confidence 0244677778766311 00 01334577889999999998899999998864 67777776643
No 481
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=48.83 E-value=33 Score=38.30 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC-----------
Q psy8372 131 SDPGKTRVLDVGA--GIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP----------- 197 (883)
Q Consensus 131 ~~~~~~rVLDVGC--GtG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~----------- 197 (883)
...++.+||=.|+ |.|..+..+++....+|++++.++.-++.+++... . ..+...-.++..
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa----~--~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGC----D--LVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----C--CEEEHHHHTCCTTGGGCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----C--EEEecccccccccccccccccch
Confidence 3467889999997 34566666666544468899999988888865321 1 112111111000
Q ss_pred ----------CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 198 ----------EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 198 ----------~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
......+|+|+-... . ..+..+.++|++||.+++..
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~G-----~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHTG-----R----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECSC-----H----HHHHHHHHHSCTTCEEEESC
T ss_pred hhhHHHHHHHHHhCCCceEEEECCC-----c----hHHHHHHHHHhcCCEEEEEe
Confidence 000236899986432 1 25677888999999988865
No 482
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=48.15 E-value=9.5 Score=41.43 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcc
Q psy8372 134 GKTRVLDVGAGI-GRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW 211 (883)
Q Consensus 134 ~~~rVLDVGCGt-G~~~~~l~~~-g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~ 211 (883)
++.+||=+|+|. |..+..+++. |. +|+++|.++.-++.+++.+. .. ..+...-.+.. ....+.+|+|+-..
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lG---a~--~vi~~~~~~~~-~~~~~g~D~vid~~ 252 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLG---AD--DYVIGSDQAKM-SELADSLDYVIDTV 252 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSC---CS--CEEETTCHHHH-HHSTTTEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcC---Cc--eeeccccHHHH-HHhcCCCCEEEECC
Confidence 788999999753 4444444443 54 69999999887777663322 11 11211100000 00113689998643
Q ss_pred cccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 212 VLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 212 vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.-. ..+..+.++|+|||+++...
T Consensus 253 g~~--------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 253 PVH--------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred CCh--------HHHHHHHHHhccCCEEEEeC
Confidence 321 12345678999999988764
No 483
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=47.48 E-value=33 Score=32.07 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCCC-ChHH-HHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCC---CCcCCCCccEE
Q psy8372 133 PGKTRVLDVGAGI-GRIS-KYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK---PEDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCGt-G~~~-~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~FDlV 207 (883)
.++.+|+=+|||. |... ..+...|. .|+++|.++..++.++. . .....+..|..+.. ... -..+|+|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~---~g~~~~~~d~~~~~~l~~~~-~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---E---FSGFTVVGDAAEFETLKECG-MEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---T---CCSEEEESCTTSHHHHHTTT-GGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---c---CCCcEEEecCCCHHHHHHcC-cccCCEE
Confidence 4577999999865 3222 22233454 69999998765543321 0 11234445543211 110 1368988
Q ss_pred EEcccccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
+...- +......+..+.+.+.|...++...
T Consensus 89 i~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 89 FAFTN-----DDSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp EECSS-----CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEeC-----CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 87432 2223344444555555555555544
No 484
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=46.90 E-value=25 Score=41.18 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|...|+||||||.|...+.++||+.
T Consensus 333 ~V~AFELgLErLaml~~gi~DIR~~ 357 (648)
T 2odr_B 333 PVMNLGLGVERLAMISGNFADVREM 357 (648)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4479999999999999999987754
No 485
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=46.41 E-value=9.5 Score=39.60 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=34.9
Q ss_pred cEEEccCCCCCCCcCCCCccEEEEccccccc--------Ch----HHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 186 KCYNVGIQDFKPEDLNIKYDVIWIQWVLMFI--------LD----EDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 186 ~~~~~d~~~~~~~~~~~~FDlVvs~~vL~hl--------~d----ed~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++++|..+......+++||+|++..-..-- .. +-....+.+++++|+|||.+++..
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4556665432211112578988886543211 01 135678888999999999998874
No 486
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=46.40 E-value=26 Score=41.15 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|.-.|+||||||.|...+.++||+.
T Consensus 333 ~V~AFELgLErLaml~~gi~DIR~~ 357 (665)
T 2odr_A 333 PVMNLGLGVERLAMISGNFADVREM 357 (665)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4479999999999999999987754
No 487
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=46.16 E-value=22 Score=43.13 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCeEEEcCCeeccCCC-----CCCccceeccCCCCceeeEecCH--HHHHHHH--HccCCC--cEEEE
Q psy8372 354 FLMRTREFLATHRDFVEVETPTLFKRTP-----GGAREFVVPTHEPNKFYSLVQSP--QQLKQLL--MVGSVD--RYFQI 422 (883)
Q Consensus 354 i~~~iR~f~~~~~gF~EV~TP~l~~~~~-----~ga~~f~v~~~~~~~~~~L~~Sp--ql~kq~l--~~~~~~--rvf~I 422 (883)
..+.+|+.| -..||.|+-|-.+++... .......+...-....-.|++|- .+.+-+. ...+.. |+|||
T Consensus 494 ~~~~~r~~l-~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEi 572 (795)
T 3pco_B 494 SLKRVKTLL-NDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFES 572 (795)
T ss_dssp CHHHHHHHH-HHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEE
T ss_pred HHHHHHHHH-HHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEe
Confidence 345688889 479999999999976410 11112222222112333688774 3332221 123333 89999
Q ss_pred eeceecCCCCCCCCcceecccccccC-------------CCHHHHHHHHHHHHHHH
Q psy8372 423 ARCYRDESTRPDRQPEFTQLDIELSF-------------TTRDDVMRLIEELLCYC 465 (883)
Q Consensus 423 ~~~FR~E~~~~~r~~EFt~le~e~~~-------------~~~~dvm~~~E~li~~i 465 (883)
|+||+.+......-.|..++-.-+++ .|+.++...+|.++..+
T Consensus 573 G~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 573 GLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99998754322222455555543333 47999999999887653
No 488
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=45.70 E-value=27 Score=41.10 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|.-.|+||||||.|...+.++||+.
T Consensus 333 ~V~AFELgLErLamlk~gi~DIR~~ 357 (685)
T 2odr_D 333 PVMNLGLGVERLAMISGNFADVREM 357 (685)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4479999999999999999987754
No 489
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=45.20 E-value=66 Score=32.98 Aligned_cols=107 Identities=20% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCCh---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHhhccCCCccEEEccCCCCCCC
Q psy8372 134 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQS------------SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPE 198 (883)
Q Consensus 134 ~~~rVLDVGCGtG~---~~~~l~~~g~~~V~gvD~S------------~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~ 198 (883)
.+.+||=.|++.|. ++..+++.|.. |+.+|.+ ...++.+....... ...+.++.+|+.+...-
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKT-GRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-TSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhc-CCceEEEEccCCCHHHH
Confidence 45688988887663 44455566665 9999876 66666655554433 23456788888764311
Q ss_pred c--------CCCCccEEEEcccccc----cChHHHH-----------HHHHHHHHHhccCcEEEEEe
Q psy8372 199 D--------LNIKYDVIWIQWVLMF----ILDEDII-----------KFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 199 ~--------~~~~FDlVvs~~vL~h----l~ded~~-----------~~l~~~~r~LKPGG~lvi~~ 242 (883)
. .-+..|+++.+..... .+.++.. .+++.+.+.|+.+|.++...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 0 0136899998765433 2223222 23455566666788877654
No 490
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=45.00 E-value=28 Score=41.08 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCcceeccHHHHHHHHhCCCCcccc
Q psy8372 828 PHGGIALGIDRLMSILCGTQSIRDV 852 (883)
Q Consensus 828 PhgG~glGldRlvm~l~~~~sIRdv 852 (883)
|.-.|+||||||.|...+.++||+.
T Consensus 333 ~V~AFELgLErLamlk~gi~DIR~~ 357 (701)
T 2odr_C 333 PVMNLGLGVERLAMISGNFADVREM 357 (701)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4479999999999999999987754
No 491
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=42.89 E-value=9.7 Score=41.62 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCC--CChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCC---CcCCCCccEE
Q psy8372 133 PGKTRVLDVGAG--IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP---EDLNIKYDVI 207 (883)
Q Consensus 133 ~~~~rVLDVGCG--tG~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~FDlV 207 (883)
.++.+||=+|++ .|..+..+++....+|+++. |+.-++.+++.... ..+...-.++.. ...++.+|+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------~vi~~~~~~~~~~v~~~t~g~~d~v 235 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAE------EVFDYRAPNLAQTIRTYTKNNLRYA 235 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------EEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCc------EEEECCCchHHHHHHHHccCCccEE
Confidence 567899999983 67777777765444688875 77777777654321 122221111100 0012358998
Q ss_pred EEcccccccChHHHHHHHHHHHHHh-ccCcEEEEEe
Q psy8372 208 WIQWVLMFILDEDIIKFLNLCKQIL-NKNGIIIIKD 242 (883)
Q Consensus 208 vs~~vL~hl~ded~~~~l~~~~r~L-KPGG~lvi~~ 242 (883)
+-.-. . ...+..+.++| ++||+++...
T Consensus 236 ~d~~g-----~---~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 236 LDCIT-----N---VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EESSC-----S---HHHHHHHHHHSCTTCEEEEESS
T ss_pred EECCC-----c---hHHHHHHHHHhhcCCCEEEEEe
Confidence 76332 1 14567778888 6999987654
No 492
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=42.71 E-value=90 Score=31.76 Aligned_cols=90 Identities=12% Similarity=0.245 Sum_probs=51.4
Q ss_pred CCeEEEEcCCC-Ch-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEccc
Q psy8372 135 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWV 212 (883)
Q Consensus 135 ~~rVLDVGCGt-G~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~v 212 (883)
+++|.=||||. |. ++..+...|...|.++|.++..++.+.+... +. ...+..+.. ...|+|+..-
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g------~~-~~~~~~~~~-----~~~Dvvi~av- 76 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE------AE-YTTDLAEVN-----PYAKLYIVSL- 76 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT------CE-EESCGGGSC-----SCCSEEEECC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC------Cc-eeCCHHHHh-----cCCCEEEEec-
Confidence 46899999974 32 3344445565558899999887776655421 11 122222221 2579888743
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
++.....++..+...+++|. +++..
T Consensus 77 ----~~~~~~~v~~~l~~~~~~~~-ivv~~ 101 (266)
T 3d1l_A 77 ----KDSAFAELLQGIVEGKREEA-LMVHT 101 (266)
T ss_dssp ----CHHHHHHHHHHHHTTCCTTC-EEEEC
T ss_pred ----CHHHHHHHHHHHHhhcCCCc-EEEEC
Confidence 33334566677766676655 44443
No 493
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=42.52 E-value=1.2e+02 Score=31.48 Aligned_cols=107 Identities=11% Similarity=0.008 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCC-----hHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--------C
Q psy8372 134 GKTRVLDVGAGIG-----RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------L 200 (883)
Q Consensus 134 ~~~rVLDVGCGtG-----~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--------~ 200 (883)
.+.++|=.|++.| .++..+++.|.. |+.++.++...+.+++...... .+.++.+|+.+...-. .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHh
Confidence 4668999997633 245556666765 8899988765555544433322 3467888887643100 0
Q ss_pred CCCccEEEEcccccc----------cChHHH-----------HHHHHHHHHHhccCcEEEEEec
Q psy8372 201 NIKYDVIWIQWVLMF----------ILDEDI-----------IKFLNLCKQILNKNGIIIIKDN 243 (883)
Q Consensus 201 ~~~FDlVvs~~vL~h----------l~ded~-----------~~~l~~~~r~LKPGG~lvi~~~ 243 (883)
-+..|+++.+..+.. ...++. ..+++.+.+.|+.+|.++....
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 146899998765432 222222 2345566677777888777653
No 494
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=42.36 E-value=95 Score=31.79 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=49.5
Q ss_pred CeEEEEcCCC-Ch-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCCCccEEEEcccc
Q psy8372 136 TRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVL 213 (883)
Q Consensus 136 ~rVLDVGCGt-G~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~FDlVvs~~vL 213 (883)
++|.=||||. |. ++..+...|. +|+++|.++..++.+.+. +.. .....+..+. ...|+|+..-
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~------~~~D~vi~av-- 65 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QLV--DEAGQDLSLL------QTAKIIFLCT-- 65 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TSC--SEEESCGGGG------TTCSEEEECS--
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhC----CCC--ccccCCHHHh------CCCCEEEEEC--
Confidence 3677889875 22 3333444555 599999998877766432 110 1112222222 2579888743
Q ss_pred cccChHHHHHHHHHHHHHhccCcEE
Q psy8372 214 MFILDEDIIKFLNLCKQILNKNGII 238 (883)
Q Consensus 214 ~hl~ded~~~~l~~~~r~LKPGG~l 238 (883)
+......++.++...++||..+
T Consensus 66 ---~~~~~~~~~~~l~~~~~~~~~v 87 (279)
T 2f1k_A 66 ---PIQLILPTLEKLIPHLSPTAIV 87 (279)
T ss_dssp ---CHHHHHHHHHHHGGGSCTTCEE
T ss_pred ---CHHHHHHHHHHHHhhCCCCCEE
Confidence 3333566778888888877644
No 495
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=39.82 E-value=14 Score=39.82 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=37.2
Q ss_pred cEE-EccCCCCCCCcCCCCccEEEEccccccc------C---hHHHHHHHHHHHHHhccCcEEEEEe
Q psy8372 186 KCY-NVGIQDFKPEDLNIKYDVIWIQWVLMFI------L---DEDIIKFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 186 ~~~-~~d~~~~~~~~~~~~FDlVvs~~vL~hl------~---ded~~~~l~~~~r~LKPGG~lvi~~ 242 (883)
.++ ++|..+....-.+++||+|++..-..-- . .+.....+.+++++|+|||.+++..
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 456 7776543221123589999986543211 0 0235678889999999999999976
No 496
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=39.19 E-value=65 Score=32.74 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCCCh---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--------CCC
Q psy8372 134 GKTRVLDVGAGIGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED--------LNI 202 (883)
Q Consensus 134 ~~~rVLDVGCGtG~---~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~--------~~~ 202 (883)
.+.++|=.|++.|. ++..+++.|. +|+.+|.++..++...+... ..+.++.+|+.+...-. .-+
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG----PRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46689988987664 3444555666 59999999887776665542 23467788887643100 013
Q ss_pred CccEEEEcccccc------cChHHHH-----------HHHHHHHHHhccCcEEEEEe
Q psy8372 203 KYDVIWIQWVLMF------ILDEDII-----------KFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 203 ~FDlVvs~~vL~h------l~ded~~-----------~~l~~~~r~LKPGG~lvi~~ 242 (883)
..|+++.+..... .+.++.. .+.+.+...++++|.++...
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 6899988664432 2223222 23455556667788877654
No 497
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=36.80 E-value=1.7e+02 Score=29.94 Aligned_cols=88 Identities=19% Similarity=0.152 Sum_probs=50.5
Q ss_pred eEEEEcCCC-Ch-HHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCcCCC-CccEEEEccc
Q psy8372 137 RVLDVGAGI-GR-ISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI-KYDVIWIQWV 212 (883)
Q Consensus 137 rVLDVGCGt-G~-~~~~l~~~g~~-~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~FDlVvs~~v 212 (883)
+|.=||+|. |. ++..+...|.. +|+++|.++..++.+++. +.. .....+..+. . . ..|+|+..-
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~~--~~~~~~~~~~---~--~~~aDvVilav- 70 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII--DEGTTSIAKV---E--DFSPDFVMLSS- 70 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC--SEEESCGGGG---G--GTCCSEEEECS-
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CCc--ccccCCHHHH---h--cCCCCEEEEcC-
Confidence 678888875 32 33334444552 699999998887766532 110 0111122111 1 2 578887743
Q ss_pred ccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 213 LMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 213 L~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
+......++.++...++++..++.
T Consensus 71 ----p~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 71 ----PVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp ----CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ----CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 333455677888888888874443
No 498
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=36.58 E-value=1.1e+02 Score=34.51 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCeEEEEcCCC-Ch-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhc-------c-------CCCccEEEccCCCCCCC
Q psy8372 135 KTRVLDVGAGI-GR-ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD-------C-------DKLDKCYNVGIQDFKPE 198 (883)
Q Consensus 135 ~~rVLDVGCGt-G~-~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~-------~-------~~~~~~~~~d~~~~~~~ 198 (883)
-.+|.=||+|. |. ++..++..|+ .|+++|.++..++.+++..... + ......+..+...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~---- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE---- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG----
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH----
Confidence 35799999987 33 4444445565 5999999999988876643210 0 0000112222211
Q ss_pred cCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEE
Q psy8372 199 DLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239 (883)
Q Consensus 199 ~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lv 239 (883)
. ...|+|+..-. ..+ +-...+++++...++|+..++
T Consensus 112 ~--~~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~ 147 (463)
T 1zcj_A 112 L--STVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLC 147 (463)
T ss_dssp G--TTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEE
T ss_pred H--CCCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEE
Confidence 1 35788887432 221 224578888888888876554
No 499
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=36.02 E-value=86 Score=35.62 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=56.1
Q ss_pred CeEEEEcCCC--ChHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhcc-----CCCc----------cE-EEccCCCCCC
Q psy8372 136 TRVLDVGAGI--GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLD----------KC-YNVGIQDFKP 197 (883)
Q Consensus 136 ~rVLDVGCGt--G~~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~-----~~~~----------~~-~~~d~~~~~~ 197 (883)
.+|-=||+|. +.++..++..|+. |++.|.+++.++.+.+...... .... .. ...+...
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~-V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 81 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQ-VLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA--- 81 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH---
Confidence 3677788886 3345556666775 9999999999999877543210 0000 00 1122211
Q ss_pred CcCCCCccEEEEcccccccChHHHHHHHHHHHHHhccCcEEEE
Q psy8372 198 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240 (883)
Q Consensus 198 ~~~~~~FDlVvs~~vL~hl~ded~~~~l~~~~r~LKPGG~lvi 240 (883)
. ...|+|+..- .... +-...+++++...++|+..++.
T Consensus 82 -~--~~aDlVIeAV-pe~~--~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 82 -L--AAADLVIEAA-SERL--EVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp -G--GGCSEEEECC-CCCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred -h--cCCCEEEEcC-CCcH--HHHHHHHHHHHHhhccCcEEEe
Confidence 1 2568887642 2221 2245788999999988765543
No 500
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=35.88 E-value=1.1e+02 Score=30.82 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCC--CCh---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHhhccCCCccEEEccCCCCCCCc--------
Q psy8372 133 PGKTRVLDVGAG--IGR---ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED-------- 199 (883)
Q Consensus 133 ~~~~rVLDVGCG--tG~---~~~~l~~~g~~~V~gvD~S~~~le~A~~~~~~~~~~~~~~~~~d~~~~~~~~-------- 199 (883)
..+.+||=.|++ .|. ++..+++.|. +|+.++.+....+.+++...... .+.++.+|+.+.....
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence 457799999975 332 3444455665 59999888665555544433322 3578888887643100
Q ss_pred CCCCccEEEEcccccc-----------cChHHHH-----------HHHHHHHHHhccCcEEEEEe
Q psy8372 200 LNIKYDVIWIQWVLMF-----------ILDEDII-----------KFLNLCKQILNKNGIIIIKD 242 (883)
Q Consensus 200 ~~~~FDlVvs~~vL~h-----------l~ded~~-----------~~l~~~~r~LKPGG~lvi~~ 242 (883)
.-+..|+++.+..+.. .+.++.. .+++.+.+.++++|.++...
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 0136899998765432 3323322 33455556666778777655
Done!