RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8372
(883 letters)
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 299 bits (767), Expect = 4e-91
Identities = 92/205 (44%), Positives = 129/205 (62%), Gaps = 11/205 (5%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV+AS++T++N+ADV +P + E+ RLK+RYLD R PEM L+ R+K R
Sbjct: 93 EVLASSLTIINRADV-LPLDS--NHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVR 149
Query: 360 EFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLLMVGSVD 417
F+ H F+++ETP L K TP GAR+++VP H KFY+L QSPQ KQLLM+ D
Sbjct: 150 RFMDDH-GFLDIETPMLTKATPEGARDYLVPSRVH-KGKFYALPQSPQLFKQLLMMSGFD 207
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLNIPTRTF 473
RY+QI +C+RDE R DRQPEFTQ+D+E SF T V ++E L+ + + F
Sbjct: 208 RYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDF 267
Query: 474 SRISYNDAISLYGSDKPDLRYDCKI 498
+++ +A YGSDKPDLR ++
Sbjct: 268 PVMTFAEAERRYGSDKPDLRNPMEL 292
Score = 243 bits (624), Expect = 8e-71
Identities = 88/291 (30%), Positives = 135/291 (46%), Gaps = 30/291 (10%)
Query: 599 KNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKITEYKNLAKK------AFNDVKMS 652
K+V+ F V L +P T K+I EY N K A+
Sbjct: 300 KSVE-FAVFAGPANDPKGRV-AALRVPGGASLTRKQIDEYGNFVKIYGAKGLAY------ 351
Query: 653 TVKVQDSLEWTNKLT----KILPDLNVEEFRNKENLEEGDLIVVSWGKQEDVLSLLGMIR 708
+KV + + + K L +E+ ++ ++GD+I ++ V +G +R
Sbjct: 352 -IKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALR 410
Query: 709 SESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPSDSGTLESAHHPFTQPHPEDEHLLS 768
+KV L L + ++ WV+DFP+F G L + HHPFT P L
Sbjct: 411 -----LKVGKDLGLT--DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELK 463
Query: 769 SNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQ----HMIQAFKY 824
+ P YD+V+NG E+GGGS+RIH+ ++Q+++ L I + ++ A KY
Sbjct: 464 AAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKY 523
Query: 825 GCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGFGGKDHLSGAPCDIPEA 875
G PPH G+A G+DRL +L GT +IRDVIAFPK ++ AP
Sbjct: 524 GTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPT 574
Score = 66.0 bits (162), Expect = 3e-11
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIV 53
R+ CG LRLS V + VTLCGW+ +R D+ F +RD G VQV
Sbjct: 2 RTEYCGQLRLSHVGQQVTLCGWVNRRR-DLGSLIFIDMRDREGIVQVFF 49
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 297 bits (764), Expect = 1e-90
Identities = 101/212 (47%), Positives = 132/212 (62%), Gaps = 16/212 (7%)
Query: 300 EVIASNITVLNKADVNIPFHI------KNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSK 353
EV S + VL +A PF + + +A E+LRLK+RYLD R MQ NLR R +
Sbjct: 91 EVELSALEVLAEAKT-PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHR 149
Query: 354 FLMRTREFLATHRDFVEVETPTLFKRTPGGAREFVVP--THEPNKFYSLVQSPQQLKQLL 411
+ +FL FV+VETP L K TP GAR+F+VP P FY+L QSPQ KQ+L
Sbjct: 150 VIKAIWDFLDRE-GFVQVETPFLTKSTPEGARDFLVPYRHE-PGLFYALPQSPQLFKQML 207
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCY----CLN 467
MV +DRYFQIARC+RDE R DRQP+FTQLD+E+SF +DV+ L E L+ + L
Sbjct: 208 MVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALG 267
Query: 468 IP-TRTFSRISYNDAISLYGSDKPDLRYDCKI 498
+ F R+SY +A+ YGSDKPDLR+ ++
Sbjct: 268 VELPLPFPRLSYEEAMERYGSDKPDLRFGLEL 299
Score = 236 bits (604), Expect = 6e-68
Identities = 94/256 (36%), Positives = 134/256 (52%), Gaps = 28/256 (10%)
Query: 631 TNKKITEYKNLAKK------AFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENL 684
+ K++ E + +AK+ A+ +V++ ++ + K L E
Sbjct: 330 SRKEVAELEEVAKRHKAQGLAW-------ARVEEG-GFSGGVAKFLEP-VREALLQATEA 380
Query: 685 EEGDLIVVSWGKQEDVLSLLGMIRSESHKIKVKNTLPLEFDNPKSFSIFWVVDFPLFLPS 744
GD ++ G ++ + LG +R ++ + L L + F WVVDFPL
Sbjct: 381 RPGDTLLFVAGPRKVAATALGAVR-----LRAADLLGL---KREGFRFLWVVDFPLLEWD 432
Query: 745 -DSGTLESAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQES 803
+ HHPFT PHPED LL +P VR L YDLVLNG E+GGGSIRIH LQ
Sbjct: 433 EEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQAR 492
Query: 804 ILHFLNIETSSLQ----HMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFPKGF 859
+ L I + ++A +YG PPHGGIA G+DRL++++ G+ SIR+VIAFPK
Sbjct: 493 VFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNK 552
Query: 860 GGKDHLSGAPCDIPEA 875
GKD L+GAP +PE
Sbjct: 553 EGKDPLTGAPSPVPEE 568
Score = 66.4 bits (163), Expect = 2e-11
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVDM----FALLRDAYGQVQVIV 53
R+H G+LR + V + V L GW+ +R D+ F LRD G VQ++
Sbjct: 3 RTHYAGSLRETHVGEEVVLEGWVNRRR-DLGGLIFLDLRDREGLVQLVA 50
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 182 bits (462), Expect = 3e-52
Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 3/205 (1%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 146 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 205
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE YD
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEP--DSYD 148
Query: 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A DD DSSV R L
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILDDVDSSVCRDLDV 207
Query: 266 FCLLFSKANLKCVKSEKGEFSPMDL 290
+ A L + E+ E P ++
Sbjct: 208 VRRIICSAGLSLLAEERQENLPDEI 232
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 167 bits (424), Expect = 4e-47
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 9/205 (4%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R LD GAGI
Sbjct: 50 YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLP-----GHGTSRALDCGAGI 104
Query: 146 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 205
GRI+K LL K + DLLE +E+AK E+ + K ++ YD
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPP--NTYD 160
Query: 206 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVRSLPQ 265
+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+ RS
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220
Query: 266 FCLLFSKANLKCVKSEKGEFSPMDL 290
+ LF+++ ++ VK E P DL
Sbjct: 221 YKRLFNESGVRVVKEAFQEEWPTDL 245
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 112 bits (283), Expect = 1e-26
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ A IT+L+KA +P + KA D RL+ R LD R EMQ ++ +S L R
Sbjct: 86 ELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFR 145
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFY----SLVQSPQQLKQLLMVG 414
E L F+E+ TP + T GGA+ F V ++ L QSPQ K+ LM G
Sbjct: 146 ETL-YKEGFIEIFTPKIIASATEGGAQLFPV------IYFGKEAFLAQSPQLYKE-LMAG 197
Query: 415 SVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYCLN------ 467
V+R F++A +R E + EF +D+E++F +DVM+L+E++L +
Sbjct: 198 VVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEG 257
Query: 468 ------------IPTRTFSRISYNDAISL 484
R+ Y +AI +
Sbjct: 258 KEELKILNYEPPEVKIPIKRLKYTEAIEI 286
Score = 94.2 bits (235), Expect = 2e-20
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF T+ E+ L S +DL+ EI GS R H E+ E L ++
Sbjct: 328 PFYTKSKSENPELSES---------FDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPE 378
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
S + ++ F YG PPH G +G+ RLM +L G QS+++++ FP
Sbjct: 379 SFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFP 421
Score = 45.2 bits (108), Expect = 7e-05
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVP 54
RSH + K V GW+ R F +LRD G QV+V
Sbjct: 3 RSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVD 51
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 109 bits (274), Expect = 2e-25
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNK-AKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT 358
EV A + VL+ A P I A D L++RY+ R + + L+ ++ +
Sbjct: 76 EVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGF 135
Query: 359 REFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVD 417
R +L +DF E+ TP + + GG+ F V E + L QSPQ KQ +MVG +
Sbjct: 136 RRYL-DRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAY--LAQSPQLYKQ-IMVGVFE 191
Query: 418 RYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRLIEELLCYCLN-------- 467
R +++A +R E R E+ LD+E+ F +D+MRL E LL L
Sbjct: 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGD 251
Query: 468 ----------IPTRTFSRISYNDAISL 484
+ R+++ +A +
Sbjct: 252 EIRLLGATWPSFPQDIPRLTHAEAKRI 278
Score = 88.0 bits (219), Expect = 2e-18
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 779 YDLVLNGNEIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDR 838
+DL+ G EI G RIH E L ++ + ++ FKYG PPHGG A+G +R
Sbjct: 337 FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAER 396
Query: 839 LMSILCGTQSIRDVIAFP 856
L L G ++R AFP
Sbjct: 397 LTQKLLGLPNVRYARAFP 414
Score = 40.6 bits (96), Expect = 0.002
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 19 SDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVPN 60
+ V + V L G+L +R F LLRD G VQV+ ++P
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPL 54
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 108 bits (272), Expect = 4e-25
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E++ I VLN+A+ +P KA+ D RL +R++D R PE+ + RS R
Sbjct: 89 EILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVR 148
Query: 360 EFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDR 418
+F F+E+ TP + T GG F + E + F L QSPQ KQ++M +DR
Sbjct: 149 DFF-HENGFIEIHTPKIIATATEGGTELFPMKYFEEDAF--LAQSPQLYKQIMMASGLDR 205
Query: 419 YFQIARCYRDESTRPDRQ-PEFTQLDIELSFTT-RDDVMRLIEELLCYCLN--------- 467
++IA +R E R E +D E++F ++VM +E L+ + +N
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKE 265
Query: 468 ---------IPTRTFSRISYNDAISL 484
P F R+SY+ A+ +
Sbjct: 266 LDILNFELEEPKLPFPRVSYDKALEI 291
Score = 94.2 bits (235), Expect = 2e-20
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF + + + +DL G EI G R H ++ + +
Sbjct: 337 PFYIMKYDNKPEICRA---------FDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPE 387
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
S + ++AF+YG PPHGG LG +RL+ + +IR+VI FP
Sbjct: 388 SFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFP 430
Score = 45.3 bits (108), Expect = 7e-05
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVP 59
R+H + + V + GW+ + F +RD G VQ+ P +V
Sbjct: 3 RTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVD 56
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 107 bits (270), Expect = 1e-24
Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 51/280 (18%)
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIA 303
V + + SL ++ + +K V + +L E+
Sbjct: 71 VKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNL---------EIHI 121
Query: 304 SNITVLNKADVNIPFHIKNYNKAKE------------DLRLKHRYLDFRFPEMQHNLRFR 351
+ I +++ +P +++ ++++ D RL +R +D R Q R +
Sbjct: 122 TKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQ 181
Query: 352 SKFLMRTREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQL 410
+ RE+L + F EV TP L + GG+ F V + + L QSPQ KQ
Sbjct: 182 AGVCELFREYL-ATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAY--LAQSPQFNKQQ 238
Query: 411 LMVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTR-DDVMRLIEELLCYC--- 465
L+V +R ++I +R E++ R EFT LD+E++F +V+ + EL +
Sbjct: 239 LIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSE 298
Query: 466 --------------------LNIPTRT-FSRISYNDAISL 484
+P R++Y + I +
Sbjct: 299 LPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEM 338
Score = 98.2 bits (245), Expect = 1e-21
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSE-LQESILHF-LNIE 811
PF T P P + +S YD + G EI G+ RIH LQE + L+ E
Sbjct: 384 PFYTMPDPANPKYSNS---------YDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPE 434
Query: 812 TSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
L+ F YGCPPH G +G++R++ ++IR FP
Sbjct: 435 DPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFP 479
Score = 41.5 bits (98), Expect = 0.001
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD----MFALLRDAYGQVQVIVPNHQVPNI 61
R D DK V + N R F LR +Q +V ++ I
Sbjct: 23 RVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTI 79
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 102 bits (255), Expect = 1e-22
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 27/211 (12%)
Query: 298 SKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMR 357
K++ + + + Y K +D RL +R LD R R +S
Sbjct: 194 GKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGL 253
Query: 358 TREFLATHRDFVEVETPTLFKR-TPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSV 416
REFL T + FVE+ TP L + GG+ F V + + L QSPQ KQ+ ++G
Sbjct: 254 FREFL-TSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAY--LAQSPQLYKQMAIMGDF 310
Query: 417 DRYFQIARCYRDESTRPDRQ-PEFTQLDIELSF-TTRDDVMRLIEELLCY---------- 464
+ F++ +R E++ R EF LDIE+ + + ++E+L +
Sbjct: 311 RKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFP 370
Query: 465 -----------CLNIPTRTFSRISYNDAISL 484
++ R F R++Y +AI +
Sbjct: 371 DELKVIRKQYPFEDLIYRPFLRLTYKEAIEM 401
Score = 94.9 bits (236), Expect = 2e-20
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
PF T P +D + +S YD+ + G EI G+ RIH E ++ +
Sbjct: 447 PFYTMPDIDDPNYSNS---------YDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPA 497
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+L+ I++F++G PH G +G++R+ + G +IR V FP
Sbjct: 498 TLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFP 540
Score = 38.6 bits (90), Expect = 0.008
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 1 SKTNVYTTR-SHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNH 56
S+ T L + +KTVT+ +Q R +F LR Q +V
Sbjct: 40 SQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKS 99
Query: 57 QVPNIYRTSTLASLP 71
+ + +
Sbjct: 100 ETISKEFVQFCQKIS 114
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 95.4 bits (238), Expect = 1e-20
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 40/210 (19%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+ + V+ ++ +++ I + ++++R++ R Q L+ RS+ R
Sbjct: 110 EMQVTEWKVIGESPIDLENIINK--DSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFR 167
Query: 360 EFLATHRDFVEVETPTLFKRTP----GGAREFVVPTHEPNKFY----SLVQSPQQLKQLL 411
++ F E++ PT+ GG+ F + +++ L QS Q L
Sbjct: 168 KYYH-DNHFTEIQPPTI---VKTQCEGGSTLFKL------QYFNEPAYLTQSSQ-LYLES 216
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQP-EFTQLDIELSFTTRDDVMRLIEELLCYC----- 465
++ S+ + F + YR E +R R E+ L+ EL F + +D++ +E+L+C
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVM 276
Query: 466 -------------LNIPTRTFSRISYNDAI 482
L +PTR F R++Y DAI
Sbjct: 277 AVHGDKIRKMNPHLKLPTRPFKRMTYADAI 306
Score = 73.8 bits (182), Expect = 7e-14
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
F P L S L + G+ EI GGS+RI + + +
Sbjct: 354 AFYMSKVPGHPDLTESVDLLMPGV--------GEIVGGSMRIWNYDELMGAYKANGLNPD 405
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
Q KYG PHGG LG++RL+ L G IR V +P
Sbjct: 406 PYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYP 448
Score = 43.0 bits (102), Expect = 3e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 21 VDKTVTLCGWLQNQRVD----MFALLRDAYGQVQVIVPNHQVPNIYRTSTL 67
K VT GW + R +F LRD G Q ++ ++ + L
Sbjct: 29 EGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLL 79
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 92.6 bits (231), Expect = 6e-20
Identities = 55/211 (26%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
E+IA ++ A +A D L +R+L R LR R+ R
Sbjct: 85 ELIADFWKIIGNAP-PGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMR 143
Query: 360 EFLATHRDFVEVETPTLFKRTPGGARE-FVVPTHEPNKFY----SLVQSPQQLKQLLMVG 414
E + +VEV PTL + G F + ++ L QS Q + +
Sbjct: 144 EHFY-NAGYVEVAPPTLVQTQVEGGSTLFNL------DYFGEQSFLTQSSQLYLET-CIP 195
Query: 415 SVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC-------- 465
++ F IA+ YR E +R R E+ ++ E F T DD+M IEEL+C
Sbjct: 196 TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADE 255
Query: 466 ------------LNIPTRTFSRISYNDAISL 484
P R F R+ Y DAI
Sbjct: 256 EAKKLLEHINPKFQPPERPFLRMEYKDAIKW 286
Score = 71.1 bits (175), Expect = 5e-13
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 755 PF-TQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNIETS 813
F Q +D L S L + G+ EI GGS+RI + + I+
Sbjct: 333 AFYMQRDAQDNTLTESVDLLMPGV--------GEIVGGSMRIWKFDELSKAFKNVEIDPK 384
Query: 814 SLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ YG PHGG LG++R + L T IRDV +P
Sbjct: 385 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 427
Score = 39.9 bits (94), Expect = 0.004
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 18 LSDVDKTVTLCGWLQNQRVD----MFALLRDAYGQVQVIVPNHQVPNIYRTSTL 67
+ ++ V + GW+ R MF +LRD G +QV++ + ++ Y T+
Sbjct: 7 VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMD-KLCQTYDALTV 59
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 92.6 bits (231), Expect = 7e-20
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 43/215 (20%)
Query: 300 EVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTR 359
EV + V+ P +A +L L +R+L R P+ ++ + +M R
Sbjct: 89 EVHVEKLEVIQAVS-EFPIPENP-EQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAR 146
Query: 360 EFLATHRDFVEVETPTLFKRTP----GGAREFVVPTHEPNKFY----SLVQSPQQLKQLL 411
E+L + EV P L GGA F + K++ L QS Q +
Sbjct: 147 EWLL-KDGWHEVFPPIL---VTGAVEGGATLFKL------KYFDKYAYLSQSAQLYLEAA 196
Query: 412 MVGSVDRYFQIARCYRDESTRPDRQ-PEFTQLDIELSFTTRDDVMRLIEELLCYC----- 465
+ +++ + + +R E +R R EF L++E ++ D+M++ EEL+ Y
Sbjct: 197 I-FGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTL 255
Query: 466 ----------------LNIPTRTFSRISYNDAISL 484
L F RISY++AI +
Sbjct: 256 ELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDI 290
Score = 73.8 bits (182), Expect = 8e-14
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGT 846
EI GGS R + + + ++ + + +YG PH G LG++RL++ +
Sbjct: 357 EIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKL 416
Query: 847 QSIRDVIAFP 856
IR FP
Sbjct: 417 DHIRWAALFP 426
Score = 41.4 bits (98), Expect = 0.001
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 9 RSHTCGALRLSDVDKTVTLCGWLQNQRVD---MFALLRDAYGQVQVIVPNHQVP 59
C ++ K V L GW+ +F +RD+ G VQ +V + V
Sbjct: 3 EKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVG 56
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 88.8 bits (221), Expect = 2e-19
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 20/173 (11%)
Query: 335 RYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETP----TLFKRTPGGAREFVVP 390
++ E+ L ++K L +F F + P A E + P
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFF-VKEGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 391 THEP--NKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQ---PEFTQLDIE 445
L S KQL + + + F ++ R ES + D EFTQLD E
Sbjct: 61 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFE 120
Query: 446 LSFTTRDDVMRLIEELLCYCLN----------IPTRTFSRISYNDAISLYGSD 488
+ +D+MRLIE L+ T+ F Y++ + +GSD
Sbjct: 121 VERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 173
Score = 74.5 bits (184), Expect = 1e-14
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 787 EIGGGSIRIHSSELQESILHFLNIETSSLQHMIQAFKYG-CPPHGGIALGIDRLMSILCG 845
E+ G R E + + + S + ++ K G P G +G++RL+ + G
Sbjct: 215 EVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVG 274
Query: 846 TQSIRDVIAFP 856
+ I +V FP
Sbjct: 275 AKHIAEVQPFP 285
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 89.2 bits (222), Expect = 3e-19
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 347 NLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTHEPNKFYSLVQ-- 402
NL R+ + R F A R +EVETP + + T F T +S
Sbjct: 35 NLLKRAAIMAEIRRFFAD-RGVLEVETPCMSQATVTDIHLVPFE--TRFVGPGHSQGMNL 91
Query: 403 ----SPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIELSFTTRDDVM 455
SP+ +K+LL V FQ+ R +R+E PEFT L+ +M
Sbjct: 92 WLMTSPEYHMKRLL-VAGCGPVFQLCRSFRNEEMGRY--HNPEFTMLEWYRPHYDMYRLM 148
Query: 456 RLIEELLCYCLNIPTRTFSRISYNDAISLY------GSDKPDLRYDCK 497
+++LL L+ P +SY A Y +DK LR
Sbjct: 149 NEVDDLLQQVLDCP--AAESLSYQQAFLRYLEIDPLSADKTQLREVAA 194
Score = 64.1 bits (157), Expect = 5e-11
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
I+A K G P G+ALG+DRL+ + G +++ +VIAF
Sbjct: 304 IEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFS 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 4e-15
Identities = 60/445 (13%), Positives = 134/445 (30%), Gaps = 125/445 (28%)
Query: 9 RSHTCGALRLSDV-DKTVTLCGWLQNQRVDMFALLRDAYGQVQVIV--PNHQVPNI---Y 62
+ + L L +V + + F L ++++ QV +
Sbjct: 241 KPYENCLLVLLNVQNAKA----------WNAFNL------SCKILLTTRFKQVTDFLSAA 284
Query: 63 RTSTLASLPIFPYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDL--DIQTSNQ 120
T+ ++ T EV L+ DL ++ T+N
Sbjct: 285 TTTHISLDHHSMTLTP--------DEVKSLLLKY-------LD--CRPQDLPREVLTTNP 327
Query: 121 FLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKD 180
S+ + D G+ + KH + L + + +
Sbjct: 328 RRLSIIAESIRD-----------GLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYR- 372
Query: 181 CDKLDKCY-NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLC--KQILNKNGI 237
K + + + F P +I ++ + W + + D++ +N ++ K
Sbjct: 373 -----KMFDRLSV--F-PPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQP- 421
Query: 238 IIIKDNVASGVKNEYDDEDSSVVRSLPQFCLLFSKANLKCV-KSEKGEFSPMDLWEDWGL 296
E + + S+ L N + +S ++ ++ L
Sbjct: 422 ----------------KESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 297 LSKEVIASNITVLNKADVN-----IPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFR 351
+ D I H+KN + + +LDFRF ++ +R
Sbjct: 465 I-----------PPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHD 510
Query: 352 SKFLMRTREFLAT------HRDFVEVETPTLFKRTPGGAREFVVPTHEPN----KFYSLV 401
S + L T ++ ++ P ++R +F +P E N K+ L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAILDF-LPKIEENLICSKYTDLL 568
Query: 402 QSPQQLKQLLMVGSV--DRYFQIAR 424
+ + ++ + + Q+ R
Sbjct: 569 RIALMAED----EAIFEEAHKQVQR 589
Score = 64.5 bits (156), Expect = 1e-10
Identities = 92/597 (15%), Positives = 162/597 (27%), Gaps = 156/597 (26%)
Query: 155 KHFDKIDLLEQSSKFIEQAK-EEILKDCDKLDKCYNV----------GIQDFKPEDLNIK 203
+FD D+ + + + + + I+ D + + +Q F E L I
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 204 YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG-----VKN---EYDDE 255
Y + + + + L + + K NV+ ++ E
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 256 D----------------SSVVRSLPQFCLLFSKA---NLKCVKSEKGEFSPMDLWEDWGL 296
V S C + K NLK S + + L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----QKL 205
Query: 297 LSKEVIASNITVLNKADVNIPFHIKNYNKAKEDLRLKHRY------LD-FRFPEMQHNLR 349
L + I N T + NI I + L Y L + + +
Sbjct: 206 LYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 350 FRSKFLMRTR-----EFL--ATHRDFVEVETPTLFKRTPGGAREFVVPTHEPNKFYSLVQ 402
K L+ TR +FL AT TP + ++ K+ L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLL------KY--LDC 313
Query: 403 SPQQLKQLLMVGSVDRYFQIARCYRDESTRPD--RQPEFTQLD--IELSFT--TRDDVMR 456
PQ L + ++ + R IA RD D + +L IE S + +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 457 LIEEL--LCYCLNIPTRTFSRI----SYNDAI---------SLYGSDKPDLRY---DCKI 498
+ + L +IPT S I +D + SL + I
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--I 431
Query: 499 MIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSY-FIREYCY 557
+ +K + L R ++ Y + +
Sbjct: 432 YLELKVKLE----NEYALHRS--------------------------IVDHYNIPKTFDS 461
Query: 558 QGPRSVGCDLIIF-HIQFFSCLHTTQSEICSRA--FRTTVL---F---QIKNVDNFRSNR 608
D + HI H E R FR L F +I++ +
Sbjct: 462 DDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 609 SETKSSGEDV--YRILILPKDLD---------------STNKKITEYKNLAKKAFND 648
++ + + Y+ I D N ++Y +L + A
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Score = 55.6 bits (133), Expect = 6e-08
Identities = 86/649 (13%), Positives = 160/649 (24%), Gaps = 223/649 (34%)
Query: 334 HRYLDFRFPEMQHNLR-----FRSKFLMR---------TREFLATH--RDFVEVETP--- 374
H ++DF E Q+ + F F+ + L+ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 375 ------TLFKRTPGGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRY-FQIARCYR 427
TL + ++FV N Y + SP + +Q Y Q R Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 428 DESTRPD----RQPEFTQL----------------------------------DIE---- 445
D R + +L ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 446 -----LSFTTRDDVMRLIEELLCYCLNIPTRTFSRISYNDAISL-YGSDKPDLRY----- 494
L+ + ++E L I SR ++ I L S + +LR
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 495 ---------D--------------CKIMIAIKEQP---PWPSGYPTRLPRRAGEPGFDSR 528
CKI++ + + + T +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 529 RGPSFFGSVLGV-WGALSLMSSYFIREYCYQGPRSVGCDLI-------IFHIQFFSCLHT 580
S L L RE PR + +I + + H
Sbjct: 302 EVKSLLLKYLDCRPQDLP-------REVLTTNPRRLS--IIAESIRDGLATWDNW--KHV 350
Query: 581 TQSEICSRAFRTTVLFQIKNVDNFRSNRSETKSSGEDVYRIL-ILPKDLDSTNKKITEYK 639
++ + ++ ++ E + ++ L + P I
Sbjct: 351 NCDKL-TTIIESS-------LNVLEPA--EYR----KMFDRLSVFPPSA-----HIPT-- 389
Query: 640 NLAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEG---------DLI 690
+ + W + + K + V + +E+ +
Sbjct: 390 ---------------ILLSLI-WFD-VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 691 VVSWGKQEDVLSLLGMIRSESHKIKVKN-TLPLEFDNPKSFSIFWVVDFPLFLPSDSGTL 749
+ K E+ +L H+ V + +P FD+ L P
Sbjct: 433 LELKVKLENEYAL--------HRSIVDHYNIPKTFDSDD-----------LIPPYLDQYF 473
Query: 750 ES--AHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLNGNEIGGGS--------------- 792
S HH HPE L L+ R L + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 793 IRIHS---SELQESILHFL-NIETSSLQH----MIQ-AFKYGCPPHGGI 832
I + L +IL FL IE + + +++ A I
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAI 579
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 77.9 bits (193), Expect = 4e-15
Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 57/255 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++ GE S + S+ L KA +P +H +K+ + R + R
Sbjct: 120 KTKVGELS--------------IKVSSYEFLTKALRPLPEKYHGLKD-----IEQRYRQR 160
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD PE + RS + R +L ++EVETP + GG AR F+ TH
Sbjct: 161 YLDLIMNPESKKTFITRSLIIQSMRRYL-DSHGYLEVETPMM-HAVAGGAAARPFI--TH 216
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N Y + + + LK+L+ VG +++ ++I R +R+E STR PEFT L++
Sbjct: 217 H-NALDMTLY-MRIAIELHLKRLI-VGGLEKVYEIGRVFRNEGISTR--HNPEFTMLELY 271
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY-GSDK 489
++ D+M+L E L+ + I T + R+ DAI Y G D
Sbjct: 272 EAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDF 331
Query: 490 PDLRYDCKIMIAIKE 504
D + KE
Sbjct: 332 WRQMSDEEARELAKE 346
Score = 60.2 bits (147), Expect = 2e-09
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
++A +YG PP GG+ +G+DRL+ +L + SIRDV+ FP
Sbjct: 451 LEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 77.2 bits (191), Expect = 8e-15
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 57/253 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
++ KGE S V + + +L KA +P FH + + ++ R + R
Sbjct: 150 RTNKGELS--------------VKCTQLRLLAKALRPLPDKFHGLAD-----QETRYRQR 190
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
Y+D PE + R R+K + R+F+ DF+EVETP L PGG A+ FV TH
Sbjct: 191 YVDLIVTPETRTTFRARTKAIASIRKFM-GDADFMEVETPML-HPIPGGAAAKPFV--TH 246
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N + + L +P+ LK+L+ VG +R F+I R +R+E S R PEFT ++
Sbjct: 247 H-NALDMEMF-LRIAPELYLKRLI-VGGFERVFEINRNFRNEGVSPR--HNPEFTMMEFY 301
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY-GSDK 489
++T +M E L+ I + F R++ AI Y S
Sbjct: 302 AAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYT 361
Query: 490 PDLRYDCKIMIAI 502
D + +
Sbjct: 362 DGQLSDDAFLRSE 374
Score = 60.3 bits (147), Expect = 2e-09
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
I+A +YG PP GG +GIDRL+ +L + +IRDV+ FP
Sbjct: 486 IRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 76.4 bits (189), Expect = 1e-14
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 58/256 (22%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++ GE S + + + +L KA +P FH +++ +++R + R
Sbjct: 129 KTQTGELS--------------IHCTELRLLTKALRPLPDKFHGLQD-----QEVRYRQR 169
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD + + RSK L R+F+ R F+EVETP + + PGG AR F+ TH
Sbjct: 170 YLDLIANDKSRQTFVVRSKILAAIRQFM-VARGFMEVETPMM-QVIPGGASARPFI--TH 225
Query: 393 EPN----KFYSLVQSPQ-QLKQLLMVGSVDRYFQIARCYRDE--STRPDRQPEFTQLDIE 445
N Y L +P+ LK+L+ VG +R F+I R +R+E S R PEFT +++
Sbjct: 226 H-NALDLDMY-LRIAPELYLKRLV-VGGFERVFEINRNFRNEGISVR--HNPEFTMMELY 280
Query: 446 LSFTTRDDVMRLIEELLCYC-------LNIP--------TRTFSRISYNDAISLY--GSD 488
+++ D++ L E L + + F +++ +AI Y +D
Sbjct: 281 MAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETD 340
Query: 489 KPDLRYDCKIMIAIKE 504
DL +
Sbjct: 341 MADLDNFDAAKALAES 356
Score = 60.2 bits (147), Expect = 2e-09
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
+ A +YG PP G+ +GIDR++ + + +IRDVI FP
Sbjct: 461 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 72.2 bits (178), Expect = 3e-13
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 59/209 (28%)
Query: 279 KSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIP--FH-IKNYNKAKEDLRLKHR 335
K++KGE S +I IT+L+ +P +K+ ++ R + R
Sbjct: 122 KTKKGELS--------------IIPYEITLLSPCLHMLPHLHFGLKD-----KETRYRQR 162
Query: 336 YLDFRF-PEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGG--AREFVVPTH 392
YLD ++ RSK + R FL F+E+ETP + PGG A+ F+ T+
Sbjct: 163 YLDLILNDFVRQKFIIRSKIITYIRSFL-DELGFLEIETPMM-NIIPGGAVAKPFI--TY 218
Query: 393 --------------EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDE--STRPDRQ 436
E Y K L+ VG +DR ++I R +R+E
Sbjct: 219 HNELDMNLYMRIAPE---LY--------HKMLV-VGGIDRVYEIGRQFRNEGIDLT--HN 264
Query: 437 PEFTQLDIELSFTTRDDVMRLIEELLCYC 465
PEFT + +++ D+M + E+++
Sbjct: 265 PEFTTCEFYMAYADYHDLMEITEKMVSGM 293
Score = 57.9 bits (141), Expect = 9e-09
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 819 IQAFKYGCPPHGGIALGIDRLMSILCGTQSIRDVIAFP 856
A +YG PP G +GIDR+ L + +I++V+ FP
Sbjct: 466 CTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 65.3 bits (159), Expect = 5e-12
Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 28/214 (13%)
Query: 87 SEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIG 146
+E + T D + G L + + VL+ G G G
Sbjct: 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDV-----VNKSFGNVLEFGVGTG 57
Query: 147 RISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDV 206
++ L + +E S + AKE KL K +++ DF ++ D
Sbjct: 58 NLTN-KLLLAGRTVYGIEPSREMRMIAKE-------KLPKEFSITEGDFLSFEVPTSIDT 109
Query: 207 IWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV---------------ASGVKNE 251
I + + D++ + Q+LNK G I+ D + G
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 252 YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEF 285
+D + +P +F + F
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHF 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 5e-11
Identities = 108/657 (16%), Positives = 196/657 (29%), Gaps = 232/657 (35%)
Query: 253 DDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKA 312
DDE ++ + +F L + + ++ S+ G+F +L+ + L
Sbjct: 51 DDEPTTPAELVGKF-LGYVSSLVE--PSKVGQFDQ--------VLNLCLTEFENCYLEGN 99
Query: 313 DVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRT--REFLATHRDFVE 370
D+ H L + + ++K L++ + R F +
Sbjct: 100 DI-------------------HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 371 VETPTLFKRTP-GGAREFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDE 429
LF+ G A+ + F Q G+ D YF+
Sbjct: 140 KSNSALFRAVGEGNAQLVAI-------F------GGQ-------GNTDDYFE-------- 171
Query: 430 STRPDRQPEFTQLDIELS--FTT-RDDVMRLIE---ELLCYCLNIPTRTFSRISYNDAIS 483
EL + T V LI+ E L + + ++
Sbjct: 172 ---------------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFTQGLN 214
Query: 484 LYG-----SDKPDLRYDCKIMIAIKEQPPWPSGYPTRLPRRAGEPGFDSRRGPSFFGSVL 538
+ S+ PD Y I I+ P ++
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPIS------CP---------------------------LI 241
Query: 539 GVWGALSLMSSYFIREYCYQGPRSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQI 598
G + ++ Y + + +G + S L S+ T V
Sbjct: 242 G----VIQLAHYVV--TA----KLLGFT----PGELRSYLKGATG--HSQGLVTAVAIAE 285
Query: 599 -KNVDNFRSNRSETKSSGEDVYRILILPKDLDSTNKKI-TEYKNLAKKAFNDVKMSTVKV 656
+ ++F + +L I +A+ + + +
Sbjct: 286 TDSWESFFVS-------VRKAITVLFF----------IGVR----CYEAYPNTSLPPSIL 324
Query: 657 QDSLEWTNK-----LT-KILPDLNVEEFRNKEN--LEEGDLIVVSW--GKQEDVL----- 701
+DSLE L+ L V+++ NK N L G + +S G + V+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 702 SLLGMIRSESHKIKVKNTL-----PLEFDNPK-SFSIFWVVDFPLFLPSDSGTLESAHHP 755
SL G+ K K + L P F K FS FLP ++ P
Sbjct: 385 SLYGL-NLTLRKAKAPSGLDQSRIP--FSERKLKFSN-------RFLPV------AS--P 426
Query: 756 FTQPHPEDEHLLSSNPLEVRGLH-YDLVLNGNEIG--------GGSIRIHSSELQESI-- 804
F H L+ ++ L + L ++ N +I G +R+ S + E I
Sbjct: 427 F---H--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 805 ------LHFLNIETSSLQHMIQAFKYGCPPHGGIALGIDRLMSILC-GTQSIRDVIA 854
+ + H++ F G P GG + G+ L GT +R ++A
Sbjct: 482 CIIRLPVKWETTTQFKATHIL-DF--G-P--GGAS-GLGVLTHRNKDGT-GVRVIVA 530
Score = 47.7 bits (113), Expect = 2e-05
Identities = 74/504 (14%), Positives = 141/504 (27%), Gaps = 172/504 (34%)
Query: 65 STLASLPIFPYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSS 124
+ A L E D E+ + Y ++ + S+
Sbjct: 103 ALAAKLL-----QENDTTLVKTKELIKNY-------------ITARIMAKRPFDKKSNSA 144
Query: 125 LYCQKKSDPGKTRVLDVGAGIGRISKYL--LAKHFD-----KIDLLEQSSKFIEQAKEEI 177
L+ + G +++ + G G Y L + DL++ S++ + E+
Sbjct: 145 LF--RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS----EL 198
Query: 178 LKDCDKLDKCYNVGIQDFK-----PEDL-NIKY-DVIWIQWVLMFILDEDIIKFLNLCKQ 230
++ +K + G+ + P + + Y I I L+ ++ + ++ K
Sbjct: 199 IRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKL 255
Query: 231 I------LNKN--GIIIIKDNV-------ASGVKNEYDDEDSSVVRSL-----------P 264
+ L G + + + + L P
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 265 QFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITVLNKADVNIPFHIKNYN 324
L +++ +G SPM LS I+ L + V ++ N
Sbjct: 316 NTSLP-PSILEDSLENNEGVPSPM--------LS-------ISNLTQEQVQD--YVNKTN 357
Query: 325 KAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTLFKRTPGGA 384
P + VE+ +L GA
Sbjct: 358 S--------------HLPAGKQ----------------------VEI---SLVN----GA 374
Query: 385 REFVVPTHEPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRP--DRQPEFTQ- 441
+ VV + P Y L + ++ K A D+S P +R+ +F+
Sbjct: 375 KNLVV-SGPPQSLYGLNLTLRKAK--------------APSGLDQSRIPFSERKLKFSNR 419
Query: 442 -LDIELSF----------TTRDDVMRLIEELLCYCLNIP---TRTFSRISYNDAISLYGS 487
L + F D+++ + IP T S D L GS
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-----DLRVLSGS 474
Query: 488 DKPDLRYDCKIMIAIKEQP-PWPS 510
+ DC I P W +
Sbjct: 475 ISERI-VDC-----IIRLPVKWET 492
Score = 44.7 bits (105), Expect = 2e-04
Identities = 76/493 (15%), Positives = 120/493 (24%), Gaps = 204/493 (41%)
Query: 11 HTCGALRLSDVDKTVTLCGWLQNQRVDMFALLRDAYGQVQVIVPNHQVPNIYRTSTL--- 67
H A L + D T+ V L+++ + S L
Sbjct: 102 HALAAKLLQENDTTL----------VKTKELIKNYITARIMA--KRPFDK-KSNSALFRA 148
Query: 68 -----ASL-PIF-------PYFTEKDGNRSHYSEVTEYYSNVPPTIDGM---LNGYSSIS 111
A L IF YF E R Y Y+ V I L+ +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEEL---RDLY---QTYHVLVGDLIKFSAETLSELIRTT 202
Query: 112 D---------LDIQT---------SNQFLSS-----------------LYCQK-KSDPGK 135
L+I +L S + + PG+
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 136 TR-----VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE----------QA------K 174
R G+ ++ +A+ K I +A
Sbjct: 263 LRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 175 EEILKDCDKLDK---CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 231
IL+D + ++ + I + E + +D + N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQV------------------QDYVNKTN---SH 359
Query: 232 LNKNGIIIIKDNVASGVKNEYDDEDSSVV----RSLPQFCLLFSKANLKCVKSEKG---- 283
L + I + N + VV +SL L K K+ G
Sbjct: 360 LPAGKQVEI------SLVNGAK---NLVVSGPPQSLYGLNLTLRK-----AKAPSGLDQS 405
Query: 284 --EFSPMDLWEDWGLLSKEVIASN---ITVLNKADVNIPFHIKNYNKAKEDL--RLKHRY 336
FS K ++ + PFH A + + L
Sbjct: 406 RIPFSER----------KLKFSNRFLPVAS--------PFHSHLLVPASDLINKDLVKNN 447
Query: 337 LDFRFPEMQ---------HNLRFRSKFLMR------TRE---------FLATH-RDFVEV 371
+ F ++Q +LR S + R F ATH DF
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--- 504
Query: 372 ETPTLFKRTPGGA 384
PGGA
Sbjct: 505 --------GPGGA 509
Score = 40.8 bits (95), Expect = 0.003
Identities = 48/275 (17%), Positives = 94/275 (34%), Gaps = 92/275 (33%)
Query: 638 YKN--LAKKAFNDVKMSTVKVQDSLEWTNKLTKILPDLNVEEFRNKENLEEGDLIVVSWG 695
YK A+ +N +D+ ++ + I+ N L + G
Sbjct: 1636 YKTSKAAQDVWNRADNHF---KDTYGFS--ILDIV----------INNPVN--LTIHFGG 1678
Query: 696 KQEDVLSLLGMIRSESHKIKVKNTLPLEFDNP-----KSFSIFWVVDFPL----FLPSDS 746
++ +I+ +N + F+ K+ IF ++ F S+
Sbjct: 1679 EK-------------GKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEK 1723
Query: 747 GTLESAHHPFTQPHPEDEHLL--SSNPLEV---RGLHYDLVLNGNEIGGGSIRIHSSELQ 801
G L + FTQP L E +GL + + G HS L
Sbjct: 1724 GLLSATQ--FTQP-----ALTLMEKAAFEDLKSKGL-----IPADATFAG----HS--LG 1765
Query: 802 E-SILH----FLNIET---------SSLQHMIQAFKYGCPPHGGIALGIDRLMSILCGTQ 847
E + L ++IE+ ++Q + + G +G IA+ R ++ +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-VAASFSQE 1824
Query: 848 SIRDVIAFPKGFGGKDHLSGAPCDIPEAERNYYNL 882
+++ V+ + G + +G +I N YN+
Sbjct: 1825 ALQYVV---ERVGKR---TGWLVEI--V--N-YNV 1848
Score = 31.6 bits (71), Expect = 1.5
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 57/155 (36%)
Query: 27 LCGWLQNQRVDMFALLRDAYGQVQVIVPNHQVPNIYRTSTLAS--LPIF-PYFTEKDGNR 83
L L+ + G Q +P + R ++ LP+ P+
Sbjct: 389 LNLTLRKAKAPS--------GLDQSRIPFSE-----RKLKFSNRFLPVASPF-------- 427
Query: 84 SHYSEVTEYYSNVPPTIDGMLNGYS---SISDL-----------DIQTSNQFLSSLYCQ- 128
H + I+ L + + D+ D++ + +S
Sbjct: 428 -H----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 129 ---------KKSDPGKTRVLDVG----AGIGRISK 150
+ T +LD G +G+G ++
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Score = 30.8 bits (69), Expect = 2.6
Identities = 49/310 (15%), Positives = 98/310 (31%), Gaps = 120/310 (38%)
Query: 249 KNEYDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDWGLLSKEVIASNITV 308
+ Y S + + +++A+ K G FS +D ++ +N
Sbjct: 1633 MDLYKT--SKAAQDV------WNRAD-NHFKDTYG-FSILD-----------IVINN--- 1668
Query: 309 LNKADVNIPFHIKNYNKAKEDLRLKHRYLDFRFPEMQHNLRFRSKFLMRTREFLATHRDF 368
P ++ + ++ R++ Y F E + + +++ + + +T F
Sbjct: 1669 --------PVNLTIHFGGEKGKRIRENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 369 VEVETPT-LFKRT----PGGA-------------REFVVPT------H---EPNKFYS-L 400
+ L T P A + ++P H E Y+ L
Sbjct: 1720 ---RSEKGLLSATQFTQP--ALTLMEKAAFEDLKSKGLIPADATFAGHSLGE----YAAL 1770
Query: 401 VQ-----SPQQLKQLLMV-GSVDRYFQIARCYRDESTR---------PDRQPEFTQLDIE 445
S + L +++ G Q+A RDE R P R +
Sbjct: 1771 ASLADVMSIESLVEVVFYRG---MTMQVA-VPRDELGRSNYGMIAINPGR--------VA 1818
Query: 446 LSFTTRDDVMRLIEEL------LC----YCLNIPTRTFSRISYNDAISLYGSDKPDLRYD 495
SF +++ + ++E + L Y N+ + Y + G D L
Sbjct: 1819 ASF-SQEALQYVVERVGKRTGWLVEIVNY--NVENQQ-----Y--VAA--G-DLRALDTV 1865
Query: 496 CKIMIAIKEQ 505
++ IK Q
Sbjct: 1866 TNVLNFIKLQ 1875
Score = 30.0 bits (67), Expect = 5.1
Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 64/156 (41%)
Query: 755 PFTQPHPEDEH--LLSSNPLEVRGLHYDLVLNGNEIGGGSIRIHSSELQESILHFLNI-- 810
P T H EH L+ + +S+LQE L
Sbjct: 8 PLTLSHGSLEHVLLVPTA------SF----------------FIASQLQEQFNKILPEPT 45
Query: 811 -------ETSSLQHMIQAFKYGCPPHGGIALG-IDRLMSILCGTQSIRDVI------AFP 856
E ++ ++ F LG + L+ D + F
Sbjct: 46 EGFAADDEPTTPAELVGKF-----------LGYVSSLVE--PSKVGQFDQVLNLCLTEFE 92
Query: 857 KGF-GGKD-H------LSGAPCDIPEAE---RNYYN 881
+ G D H L + + + +NY
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 61.0 bits (148), Expect = 1e-10
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
P ++L++G G G ++ +LA FD +D + S + +A + + +
Sbjct: 42 PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSPELAAEASRRLGRPVRTML------F 94
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
D YD +W L+ + +++ L L + L G+
Sbjct: 95 HQLDAID---AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA 139
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 60.9 bits (148), Expect = 2e-10
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 25/165 (15%)
Query: 87 SEVTEYYSNVPPT----IDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVG 142
SE+ + V + + + + ++ +LD+G
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVD-----------TENPDILDLG 52
Query: 143 AGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLN 201
AG G +S +L+ K+ + L++ S K +E AK + V + +
Sbjct: 53 AGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN-------RFRGNLKVKYIEADYSKYD 105
Query: 202 I--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
KYD++ + + DED + IL ++GI I D V
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 59.5 bits (144), Expect = 5e-10
Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
+ + VL++ +G G ++ L+ D++ L+ S++ I +A L + + +
Sbjct: 43 AGNIRGDVLELASGTGYWTR-HLSGLADRVTALDGSAEMIAEAGRHGLDNVE-----FRQ 96
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247
+ D+ P+ ++D ++ L + D+ F + + G++ D
Sbjct: 97 QDLFDWTPDR---QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 60.1 bits (145), Expect = 6e-10
Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDK------- 159
+S+ + ++ L + + + ++L +G G G I +L+K +
Sbjct: 25 HSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84
Query: 160 IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF-------KPEDLNIKYDVIWIQWV 212
+++E S++ I + KE + K + + + + + K+D I + +
Sbjct: 85 NEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQM 144
Query: 213 LMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS--------GVKNEYDDEDSSVVRSLP 264
L ++ +DI L +L N ++I S + + +D +
Sbjct: 145 LYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 202
Query: 265 QFCLLFSKANLKCVKSEK 282
+ LK +
Sbjct: 203 DLTQMLDNLGLKYECYDL 220
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 59.7 bits (144), Expect = 1e-09
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 6/167 (3%)
Query: 76 FTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGK 135
F + E+ E+Y+++ S ++ + +N F+ + + + G
Sbjct: 10 FRKDQAMEGKKEEIREHYNSIRERGR-ESRQRSKTINI--RNANNFIKACLIRLYTKRGD 66
Query: 136 TRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
VLD+G G G + ++ + I A+ + +
Sbjct: 67 -SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG 125
Query: 196 KPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 240
+ DL ++DVI Q+ + E + + L G I+
Sbjct: 126 RHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 57.5 bits (139), Expect = 2e-09
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 86 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 145
+V++ YS+ + +L S D D + +LDVG+G
Sbjct: 2 TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWA---------TGVDGVILDVGSGT 52
Query: 146 GRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI- 202
GR + +L + ++ +++ +E A++ DL+
Sbjct: 53 GRWTGHLASLGHQIEGLEP---ATRLVELARQT-HPSVT-------FHHGTI--TDLSDS 99
Query: 203 --KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVV 260
++ + + L+ + ++ L + + G +++ ++ Y ++
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYR 159
Query: 261 RSLPQFCLLFSKANLKCVKSEKGEFSP 287
LP+ A + S P
Sbjct: 160 WPLPELAQALETAGFQVTSSHWDPRFP 186
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 55.2 bits (133), Expect = 9e-09
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 116 QTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
+T ++ L ++ K PG + LD+G G GR S YL A +D +D ++++ I +
Sbjct: 19 RTHSEVLEAV---KVVKPG--KTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSIANVER 72
Query: 176 EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKN 235
+K + LD + + D + +YD I VLMF+ + I + ++
Sbjct: 73 --IKSIENLDNL-HTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 129
Query: 236 GIIII 240
G +I
Sbjct: 130 GYNLI 134
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 56.5 bits (136), Expect = 1e-08
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 124 SLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDK 183
+VLD+G G GR S YL + + + + I E K+
Sbjct: 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYL-SLLGYDVTSWDHNENSIAFLNETKEKENLN 168
Query: 184 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + + D ++ YD I V MF+ E + + K+ N G +I
Sbjct: 169 I----STALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 57.0 bits (138), Expect = 1e-08
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 27/178 (15%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDK 183
+ +VLD+ A G + + D +E AKE +
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVD----WASV---LEVAKE-NARIQGV 213
Query: 184 LDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ + + D YD++ + L + L K L G +I+ D
Sbjct: 214 ASRYHTIA-GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272
Query: 244 VASGVKNE------YDDE-----DSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDL 290
+ + + + + + ++ +FS A + + +
Sbjct: 273 IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 55.7 bits (134), Expect = 1e-08
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
G RVLD+G G G + + + I + + + I+ + K + +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIESIGV-DINEDMIKFCEG-------KFNVVKS 88
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
I+ K D + I + + E + + L+LC + + I+I
Sbjct: 89 DAIEYLKSLPDK-YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVI 138
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 55.6 bits (134), Expect = 1e-08
Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 37/200 (18%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187
+L++G+ G + L +HF+ I +E S + I A+ +L
Sbjct: 36 AFTPFFRPGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQG-------RLKDG 87
Query: 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILD--EDIIKFL-NLCKQILNKNGIIII---- 240
F+ L +YD I VL +L+ +D + L + L + G + +
Sbjct: 88 ITYIHSRFEDAQLPRRYDNI----VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143
Query: 241 ---KDNVASGVKNEYDDEDSSVVR----------SLPQFCLLFSKANLKCVKSEKGEFSP 287
+ + +L S+A L+ F
Sbjct: 144 ANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKA 203
Query: 288 -----MDLWEDWGLLSKEVI 302
D +LSKE +
Sbjct: 204 LANFQWDQILQTDILSKEYL 223
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 54.0 bits (130), Expect = 4e-08
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
K VLD+G G + + ++ ++ +E + EQAKE K
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKE----------KLD 75
Query: 189 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKNGIIII 240
+V + D + D+ ++D + + +L+ D + K + +NG+I+
Sbjct: 76 HVVLGDIETMDMPYEEEQFDCV----IFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 54.5 bits (131), Expect = 4e-08
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 136 TRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
+ + D+G G G + LA H +D S FI+ + L V
Sbjct: 48 SLIADIGCGTGGQTMV-LAGHVTGQVTGLDF---LSGFIDIFNRNARQ--SGLQN--RVT 99
Query: 192 IQDFKPEDL---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
+DL N + D+IW + + I E + LN ++ L K G + + +
Sbjct: 100 GIVGSMDDLPFRNEELDLIWSEGAIYNIGFE---RGLNEWRKYLKKGGYLAVSE 150
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 53.8 bits (129), Expect = 5e-08
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194
+VLD+ G+G S L F+ +D+ S I +A+E ++ + VG D
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDI---SEDMIRKAREYAKSRESNVE--FIVG--D 93
Query: 195 FKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251
L+ + +D + ++ ++ + +++L +G I+ +
Sbjct: 94 A--RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 252 YDDE 255
+
Sbjct: 152 LKES 155
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 54.1 bits (130), Expect = 5e-08
Identities = 28/177 (15%), Positives = 71/177 (40%), Gaps = 26/177 (14%)
Query: 103 MLNGYSSISDL----------DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYL 152
M Y+ +++ ++ F+ ++ + + RVLD+ G G +
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVR-RVLDLACGTGIPTLE- 58
Query: 153 LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQW 211
LA+ ++ L+ + + A+ + + K++ + G + + ++ ++D + + +
Sbjct: 59 LAERGYEVVGLDLHEEMLRVARRKAKERNLKIE--FLQGDVLEIAFKN---EFDAVTMFF 113
Query: 212 -VLMFILDEDIIKFLNLCKQILNKNGIIII-------KDNVASGVKNEYDDEDSSVV 260
+M+ +ED+ K + + L G+ I V NE E+ V+
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 52.8 bits (127), Expect = 1e-07
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 112 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 171
D ++ L + P + +LDV G G ++ K F LE S +
Sbjct: 20 GKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEH-FTKEFGDTAGLELSEDMLT 76
Query: 172 QAKEEILKDCDKLDKCYNVG--IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 227
A++ + + D + L K+ + + + ++ E++ +
Sbjct: 77 HARK----------RLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVAS 126
Query: 228 CKQILNKNGIIII 240
+ L G++++
Sbjct: 127 FAEHLEPGGVVVV 139
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 52.4 bits (126), Expect = 1e-07
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 111 SDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFI 170
+D+D + + F+ +++ LD+ G G +++ L K + ++ S + +
Sbjct: 16 ADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEML 72
Query: 171 EQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLC 228
+A+ + K + QD ++N K+D+I +I+D +D+ K+
Sbjct: 73 SEAENKFRSQGLKP----RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAV 128
Query: 229 KQILNKNGIIII-------KDNVASGVKNEYDDEDSSVVR 261
L + G+ I V YDD++
Sbjct: 129 SNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 51.8 bits (124), Expect = 2e-07
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKC 187
+S+ K VLD GAG + + K +E S +++A+ ++ KL+
Sbjct: 18 CNESNLDK-TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN-- 74
Query: 188 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
+ G D L K ++ + + D+ + ++ K++L G+ I
Sbjct: 75 ISKG--DI--RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF 128
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 52.6 bits (126), Expect = 2e-07
Identities = 26/185 (14%), Positives = 67/185 (36%), Gaps = 13/185 (7%)
Query: 58 VPNIYRTSTLASLPIF-PYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQ 116
VP ++ L P+ P+ + + ++Y G + IQ
Sbjct: 15 VPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDE----------GAADTYRDLIQ 64
Query: 117 TSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEE 176
++ + ++ P VL++ AG+GR++ L ++ + LE S+ + ++
Sbjct: 65 DADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWE-VTALELSTSVLAAFRKR 123
Query: 177 ILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQW-VLMFILDEDIIKFLNLCKQILNKN 235
+ + + + D L+ ++ + I + + + D ++ L
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPG 183
Query: 236 GIIII 240
G ++
Sbjct: 184 GKFLL 188
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 52.4 bits (126), Expect = 3e-07
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
R+LD+G G+ + + + D L Q +E +++ +
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD----LPQQ---LEMMRKQT-AGLSGSE 229
Query: 186 KCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ + G + D+ +D +W+ L +E++I L Q + K+ + I +
Sbjct: 230 RIHGHGA-NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLF 270
+ + L Q L F
Sbjct: 289 LWD------RQRYETASYCLTQISLYF 309
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 52.4 bits (126), Expect = 4e-07
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
V+D+ G G +L +H +D + + K I
Sbjct: 178 ARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG--------G 229
Query: 186 KCYNVGIQDF--KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
+ ++ DV+ + L + + + + ++ G ++I
Sbjct: 230 RVEFFE-KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288
Query: 244 VASGVKNEYDDEDSSVVRSLPQFCLLFS 271
++D R P FS
Sbjct: 289 TM--------NDD----RVTPALSADFS 304
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 51.4 bits (123), Expect = 4e-07
Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 112 DLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIE 171
D L++L ++ P +LDV G G ++ LA F ++ LE S+ +
Sbjct: 30 GKDYHREAADLAALV--RRHSPKAASLLDVACGTGMHLRH-LADSFGTVEGLELSADMLA 86
Query: 172 QAKEEILKDCDKLDKCYNVGI--QDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNL 227
A+ + + + D + L ++ + + + + ++ L
Sbjct: 87 IARR----------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALER 136
Query: 228 CKQILNKNGIIII 240
+ +G++++
Sbjct: 137 FAAHVLPDGVVVV 149
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 51.3 bits (123), Expect = 5e-07
Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 141
N + E + Y + G + IS ++ + + LS + + S +VLD+
Sbjct: 16 NNQYTDEGVKVYE--------FIFGENYISSGGLEATKKILSDIELNENS-----KVLDI 62
Query: 142 GAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 197
G+G+G Y + + + ID+ S + A E + + +K D
Sbjct: 63 GSGLGGGCMY-INEKYGAHTHGIDI---CSNIVNMANERVSGN----NKI-IFEANDILT 113
Query: 198 EDL-NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN------ 250
++ +D+I+ + ++ + E+ K C + L G ++I D A+ +N
Sbjct: 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK 173
Query: 251 EYDDEDSSVVRSLPQFCLLFSKANLKCVKSE 281
EY + + ++ ++ + + N K V S+
Sbjct: 174 EYVKQRKYTLITVEEYADILTACNFKNVVSK 204
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 50.5 bits (121), Expect = 6e-07
Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 126 YCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
+ ++ +PGK R+ D+G G G + LA H++ + ++ S + +E A+E+ ++ +D
Sbjct: 26 WVLEQVEPGK-RIADIGCGTGTATLL-LADHYE-VTGVDLSEEMLEIAQEKAMETNRHVD 82
Query: 186 KCYNVG-IQDFKPEDLNIKYDVIWIQW-VLMFILD-EDIIKFLNLCKQILNKNGIIII-- 240
+ V +++ + + D I I L ++ D+ + + ++L G ++
Sbjct: 83 --FWVQDMRELELPE---PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137
Query: 241 -----KDNVASGVKNEYDDEDSSVVR 261
+ + +G E SS +
Sbjct: 138 HSPYKMETLFNGKTYATHAEQSSYIW 163
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 51.0 bits (122), Expect = 7e-07
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 30/145 (20%)
Query: 338 DFRFPEMQHNLRFRSKFLMRTREFLATHRDFVEVETPTL-----FKRTPG---------- 382
E ++ + K F F+E+++P L +R
Sbjct: 69 QIYAEEREN---YLGKLEREITRFFVDR-GFLEIKSPILIPLEYIERMGIDNDTELSKQI 124
Query: 383 --GAREFVVPTH-EPNKFYSLVQSPQQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEF 439
+ F + PN + L + + L + + F+I CYR ES + EF
Sbjct: 125 FRVDKNFCLRPMLTPNLYNYLRKLDRALPDPI------KIFEIGPCYRKESDGKEHLEEF 178
Query: 440 TQLDIEL--SFTTRDDVMRLIEELL 462
T L S TR+++ +I + L
Sbjct: 179 TMLVFWQMGSGCTRENLESIITDFL 203
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 49.6 bits (118), Expect = 1e-06
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 7/128 (5%)
Query: 114 DIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQA 173
D + + L G R L G G G + + + L+ S + +A
Sbjct: 48 DQGRATPLIVHLVDTSSLPLG--RALVPGCGGGHDVVAMASPERF-VVGLDISESALAKA 104
Query: 174 KEEILKDCDKLDKCYNVG-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL 232
E + + ++P + +D+I+ I E + ++L
Sbjct: 105 NETYGSSPKAEYFSFVKEDVFTWRPTE---LFDLIFDYVFFCAIEPEMRPAWAKSMYELL 161
Query: 233 NKNGIIII 240
+G +I
Sbjct: 162 KPDGELIT 169
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 49.5 bits (118), Expect = 2e-06
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 136 TRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
++ D+G G G + + LA + IDL FIE E +K
Sbjct: 48 AKIADIGCGTGGQTLF-LADYVKGQITGIDL---FPDFIEIFNENAVK--ANCADRVKGI 101
Query: 192 IQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
++L + D+IW + + I E + +N + L K G I + +
Sbjct: 102 TGSM--DNLPFQNEELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAVSE 150
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 48.4 bits (115), Expect = 5e-06
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDK------IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
++D G G G + +L + ID + +A+E D +
Sbjct: 25 HIVDYGCGYGYLGL-VLMPLLPEGSKYTGIDS---GETLLAEARELFRL--LPYDSEFLE 78
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
G + + D KYD+ L+ + L + K G II +
Sbjct: 79 GDATEIELND---KYDIAICHAFLLHM--TTPETMLQKMIHSVKKGGKIICFE 126
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 48.0 bits (114), Expect = 5e-06
Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
D + VLD+G G G Y K+ ++ S + + +AK + CY
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRK----TTSPVVCYEQK 97
Query: 192 IQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN----V 244
ED+ I Y+V+ L +I L +G I
Sbjct: 98 ----AIEDIAIEPDAYNVVLSSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFT 151
Query: 245 ASGVKNEYDDED 256
A G ++ Y DE
Sbjct: 152 ADGRQDWYTDET 163
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 47.3 bits (112), Expect = 5e-06
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG- 191
+ R+L +G G +S L F + ++ SS + + +
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRWETMD 97
Query: 192 IQDFKPEDLNIKYDVIWIQWVLMFILD-------------EDIIKFLNLCKQILNKNGII 238
++ +DV+ + L +L + + L+ ++L G
Sbjct: 98 VRKLDFPSA--SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155
Query: 239 II 240
I
Sbjct: 156 IS 157
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 48.1 bits (114), Expect = 6e-06
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLD-KCY 188
G RVLDV G G S L+ + F +D S K ++ A +E + +
Sbjct: 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDA---SDKMLKYALKERWNRRKEPAFDKW 111
Query: 189 NVGIQDFKPEDLNI----KYDVIWIQW-VLMFILD-----EDIIKFLNLCKQILNKNGII 238
+ ++ D ++ +D + + D + L ++ G++
Sbjct: 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171
Query: 239 II 240
+I
Sbjct: 172 VI 173
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 46.2 bits (110), Expect = 7e-06
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 113 LDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQ 172
+ ++ ++L +++ KK ++D G G G KY L + K+ ++ + +++
Sbjct: 1 MSLERPEEYLPNIFEGKKG-----VIVDYGCGNGFYCKY-LLEFATKLYCIDINVIALKE 54
Query: 173 AKEEILKDCDKLDKCYNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCK 229
KE K D + + I D I + +D ++ K
Sbjct: 55 VKE-------KFDSVITLS------DPKEIPDNSVDFILFANSFHDM--DDKQHVISEVK 99
Query: 230 QILNKNGIIIIKD 242
+IL +G +II D
Sbjct: 100 RILKDDGRVIIID 112
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 47.2 bits (112), Expect = 7e-06
Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 82 NRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDV 141
+ + + + D ++ S + ++ + ++ VLDV
Sbjct: 9 KFNWHESAEKKW-------DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEA-EVLDV 60
Query: 142 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK--------DCDKLDKCYNVGIQ 193
G G G + Y L++ K ++ S I++ KE D L
Sbjct: 61 GCGDGYGT-YKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL--------- 110
Query: 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE-- 251
F+ E +++ I L + E+ ++ LN K++L +G I + E
Sbjct: 111 PFENE----QFEAIMAINSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS 164
Query: 252 ----YDDEDSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
Y + +F L + K V + + E
Sbjct: 165 YPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV--DGIGVYKRGVNEKM 209
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 46.7 bits (111), Expect = 8e-06
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKC 187
S + L++G G + LA H + ID+ + I +A + K +
Sbjct: 48 SSGAVSNGLEIGCAAGAFT-EKLAPHCKRLTVIDV---MPRAIGRACQR-TKRWSHIS-- 100
Query: 188 YNVG-IQDFKPEDLNIKYDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIIIKD 242
+ I F + +D+I + VL ++ D + ++ ++L G ++
Sbjct: 101 WAATDILQFSTAE---LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 48.3 bits (114), Expect = 1e-05
Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLA--KHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY- 188
+ + ++D G G G + LL I ++ S K + +A + + +K
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778
Query: 189 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + D + + D+ V+ + ++ +F + ++I+
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF-HPKLLIV 832
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 46.5 bits (110), Expect = 1e-05
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 113 LDIQTSNQFLSSLY-------CQKKSDPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLE 164
++ + + + SL RV+D+G G G + K LL F++I ++
Sbjct: 1 MEEEAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVD 60
Query: 165 QSSKFIEQAKE----EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED 220
S + +E A+E L G ++ + + YD + V+ +
Sbjct: 61 VSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFH-GYDAATVIEVIEHLDLSR 119
Query: 221 IIKFLNLCKQILNKNGIIII 240
+ F + + + I+I+
Sbjct: 120 LGAFERVLFEFA-QPKIVIV 138
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 46.6 bits (111), Expect = 2e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 29/165 (17%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
G +++DVG GIG IS +L + L + I+ E + D+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILN----LPGA---IDLV-NENAAEKGVADR 241
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
+ + D E + D + +L ++ + G ++I D V
Sbjct: 242 MRGIAV-DIYKESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299
Query: 247 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVK 279
+N D S + + ++ + K V
Sbjct: 300 DPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 344
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 45.7 bits (108), Expect = 2e-05
Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLA-KHFDKIDLLEQSSKFIEQAKE----EILKDCDKLDK 186
+V+D+G G G + LL K F++I ++ S +E+AK+ + L + +
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIII 239
++ + + YD + V+ + + + F + + +I+
Sbjct: 87 SLFQSSLVYRDKRFS-GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 45.2 bits (107), Expect = 3e-05
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
P ++LD G G GRI YL + D DL I+ AK+ D + + V
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDL---DPILIDYAKQ----DFPEAR--WVV 95
Query: 191 G-IQDFKPEDLNIKYDVIWIQWVLM-FILDEDIIKFLNLCKQILNKNGIIII 240
G + + + +D+I +M F+ ++ L + L +G +I
Sbjct: 96 GDLSVDQISE--TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 45.4 bits (107), Expect = 3e-05
Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 10/136 (7%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
+P ++D G G +K+ L++ F + +D+ S +E A +E
Sbjct: 55 NPEL-PLIDFACGNGTQTKF-LSQFFPRVIGLDV---SKSALEIAAKENTAANISYRLLD 109
Query: 189 NVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV 248
+ + I I+++ I E + +L K G + + + +
Sbjct: 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI 169
Query: 249 KNEYDDEDSSVVRSLP 264
++ + LP
Sbjct: 170 --DFFNSLLEKYGQLP 183
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 44.5 bits (105), Expect = 7e-05
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 21/110 (19%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
D+G G G ++ LL + ID +E+A + L + + +
Sbjct: 36 NGYDLGCGPGNSTE-LLTDRYGVNVITGIDS---DDDMLEKAADR-LPNTN-----FGKA 85
Query: 192 -IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ +KP K D+++ V ++ D + L+ L G++ +
Sbjct: 86 DLATWKPAQ---KADLLYANAVFQWV--PDHLAVLSQLMDQLESGGVLAV 130
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 45.2 bits (107), Expect = 7e-05
Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 26/174 (14%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
G + ++DVG G GR + +++K+ K I +++++ L +VG
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYP--------LIKGINFDLPQVIENAPPLSGIEHVGG 259
Query: 193 QDFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNE 251
F + + D + ++ V DE I+FL+ C + L+ NG +II + + N
Sbjct: 260 DMFAS----VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT 315
Query: 252 YDDEDSSVV-------------RSLPQFCLLFSKANLKCVKSEKGEFSPMDLWE 292
++ R+ Q+ L + + F+ + + E
Sbjct: 316 SEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 369
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 44.2 bits (105), Expect = 1e-04
Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 34/163 (20%)
Query: 137 RVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
+DVG G G ++K +L D E S + A + L ++
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLD----REGS---LGVA-RDNLSSLLAGERVSL 221
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVK 249
VG D +++ D+ + ++ + + ++ L C++ + +G +++ +
Sbjct: 222 VG-GDML-QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI---- 275
Query: 250 NEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVK 279
+ + SV+ R+ + L + +
Sbjct: 276 SASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 43.6 bits (103), Expect = 1e-04
Identities = 16/105 (15%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG-IQDF 195
+LD+G G G++++ +A+ ++ + ++ IE+A++ ++V ++F
Sbjct: 60 FILDLGCGTGQLTE-KIAQSGAEVLGTDNAATMIEKARQN-YPHLH-----FDVADARNF 112
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + D ++ +L ++ + + + Q L G +
Sbjct: 113 RVDK---PLDAVFSNAMLHWVKEPE--AAIASIHQALKSGGRFVA 152
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 43.9 bits (104), Expect = 1e-04
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 30/165 (18%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
VLDVG G G + + + + L E+A+ D D+
Sbjct: 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE----LAGP---AERAR-RRFADAGLADR 233
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
DF + L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 234 VTVAE-GDFF-KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA-D 290
Query: 247 GVKNEYDDEDSSVV------------RSLPQFCLLFSKANLKCVK 279
+ D S+++ R+ + L A L
Sbjct: 291 VEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK---IDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
G R++D+G G G ++ +DL S K + +A+ Y
Sbjct: 43 GGL-RIVDLGCGFGWFCRWAHEHGASYVLGLDL---SEKMLARARAA----GPDTGITYE 94
Query: 190 VGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
D + L++ +D+ + L ++ ED+ + Q L+ G +
Sbjct: 95 RA--DL--DKLHLPQDSFDLAYSSLALHYV--EDVARLFRTVHQALSPGGHFVFSTE 145
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 43.3 bits (102), Expect = 2e-04
Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 18/186 (9%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164
I + ++T S L + LD+GAG G +++ L + F ID L
Sbjct: 55 DQDEIREASLRTDEWLASELAMTGVLQRQA-KGLDLGAGYGGAARF-LVRKFGVSIDCLN 112
Query: 165 QSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDI 221
+ ++ +E + L V F ++ YD IW Q + D+
Sbjct: 113 IAPVQNKRNEEYNNQ--AGLADNITVKYGSF--LEIPCEDNSYDFIWSQDAFLHSPDKL- 167
Query: 222 IKFLNLCKQILNKNGIIIIKDNVASGVKNE------YDDEDSSVVRSLPQFCLLFSKANL 275
K C ++L G++ I D + ++ D + SL + L + L
Sbjct: 168 -KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGL 226
Query: 276 KCVKSE 281
+++
Sbjct: 227 VTLRTF 232
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 42.6 bits (100), Expect = 3e-04
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 19/150 (12%)
Query: 106 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLE 164
GYS L + + L L P +VL+ G GIG + L + D +I ++
Sbjct: 9 GYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSID 68
Query: 165 QSSKFIEQAKEEILKDCDKLDKCYNVGIQ-------DFKPEDLNIKYDVIWIQWVLMFIL 217
S + +E+A+E K+ K NV F+ +D I++ +VL +
Sbjct: 69 ISPESLEKARENTEKNGIK-----NVKFLQANIFSLPFEDS----SFDHIFVCFVLEHL- 118
Query: 218 DEDIIKFLNLCKQILNKNGIIIIKDNVASG 247
+ + L K++L G I + +
Sbjct: 119 -QSPEEALKSLKKVLKPGGTITVIEGDHGS 147
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 42.4 bits (99), Expect = 4e-04
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK-----IDLLEQSSKFIEQAKEEILKDCDKLDKC 187
PG V V G L ID + ++ A L
Sbjct: 118 PGC-VVASVPCGWMSELLALDYSACPGVQLVGIDY---DPEALDGATRLAAG--HALAGQ 171
Query: 188 YNVGIQDFKPEDLNIKYDVIWIQWVLMFILDED-IIKFLNLCKQILNKNGIIIIKD 242
+ QD D YD++ + ++ D+ + + Q L G ++
Sbjct: 172 ITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 41.7 bits (98), Expect = 5e-04
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
VLDV G G ++ A K+ + + ++ A+ I + V
Sbjct: 40 EVLDVATGGGHVA-NAFAPFVKKVVAFDLTEDILKVARAFIEG-----NGHQQVEYVQGD 93
Query: 197 PEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGV---KN 250
E + + ++ + + F++ ++L K G +++ DN A
Sbjct: 94 AEQMPFTDERFHIVTCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 151
Query: 251 EYD----DEDSSVVRSLP--QFCLLFSKANLKCVKSEKGEFSPMDLWEDW 294
Y+ + D S R+ + + +A + + F ++EDW
Sbjct: 152 FYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH--CFHKTFIFEDW 199
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 42.0 bits (98), Expect = 7e-04
Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 33/207 (15%)
Query: 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNG------------YSSISDLDIQTSNQFLSSLY 126
S V +YY + + ++D+ + +F
Sbjct: 15 GGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGS 74
Query: 127 CQKKSD--PGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDC 181
G VLD+G G GR YL +K K+ ++ +E A++ +
Sbjct: 75 TLPADGSLEGA-TVLDLGCGTGRDV-YLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132
Query: 182 DKLDKCYNVGIQDFKPEDL------------NIKYDVIWIQWVLMFILDEDIIKFLNLCK 229
+K + F + + D++ V ++
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL--ALFKEIH 190
Query: 230 QILNKNGIIIIKDNVASGVKNEYDDED 256
++L G + D A +E +D
Sbjct: 191 RVLRDGGELYFSDVYADRRLSEAAQQD 217
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 40.6 bits (95), Expect = 7e-04
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
++L + G GR + +L + ++ + ++QSS + +AK+ + K+ + DF
Sbjct: 32 KILCLAEGEGRNACFLASLGYE-VTAVDQSSVGLAKAKQLAQEKGVKIT-TVQSNLADFD 89
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ I + + + Q L G+ I+
Sbjct: 90 IVAD--AWEGIV--SIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 41.6 bits (98), Expect = 8e-04
Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 25/161 (15%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
G +D+G G G + +L + E+A+E +L D+
Sbjct: 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLE----RPPV---AEEARE-LLTGRGLADR 253
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
C + DF E + DV I+ VL D+D+++ L + + +++ DN+
Sbjct: 254 CEILP-GDFF-ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311
Query: 247 GVKNEYD---D-----EDSSVVRSLPQFCLLFSKANLKCVK 279
D RS +F L K+ L+ +
Sbjct: 312 ERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 41.5 bits (98), Expect = 9e-04
Identities = 32/166 (19%), Positives = 49/166 (29%), Gaps = 37/166 (22%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
V+DVG G G + LL H D L+ A D +
Sbjct: 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLD----LQGP---ASAAHRR-FLDTGLSGR 220
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
V F + L + VL D + L C + G++++ + VA
Sbjct: 221 AQVVV-GSFF-DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA- 277
Query: 247 GVKNEYDDEDSSVV-------------RSLPQFCLLFSKANLKCVK 279
DE + RSL + L ++A L
Sbjct: 278 ------GDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRA 317
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 40.6 bits (95), Expect = 0.001
Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 43/221 (19%)
Query: 79 KDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRV 138
D H+ + + + + +LS L K P R
Sbjct: 3 SDKIHHHHHHMWHIFERFVNEYERWFLVHR----------FAYLSELQAVKCLLPEG-RG 51
Query: 139 LDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK----DCDKLDKCYNVGIQD 194
+++G G GR A +E S + E A++ + + L
Sbjct: 52 VEIGVGTGR-----FAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENL---------P 97
Query: 195 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD-NVASGVKNEY- 252
K E +D + + F+ +D + L +IL K G +I+ + S + EY
Sbjct: 98 LKDE----SFDFALMVTTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 253 -DDEDSSVVR-----SLPQFCLLFSKANLKCVKSEKGEFSP 287
+ E S + S + L KA + K + F
Sbjct: 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKH 192
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 41.2 bits (97), Expect = 0.001
Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
VLDVG G G + + + + + + ++ A+ LKD D+
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLE----MAGT---VDTAR-SYLKDEGLSDR 234
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 246
V DF E L K D I + +VL+ D D ++ L C + L G I+I +
Sbjct: 235 VDVVE-GDFF-EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD- 291
Query: 247 GVKNEYDDEDSSV-----------VRSLPQFCLLFSKANLKCVK 279
+N ++++ + + +R+ ++ L + A L +
Sbjct: 292 LHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 40.8 bits (95), Expect = 0.001
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 132 DPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
D + ++DVG G G + + K F++I + S+ I+ A+ D N
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK---N 90
Query: 190 VGIQDFKPEDLNI---------KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
V + +D K D+I + D KF L K+G I I
Sbjct: 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAI 147
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.8 bits (93), Expect = 0.002
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKC 187
+ +D+G+G G +S LAK D I L+ S E A + I +
Sbjct: 38 NRFGITAGTCIDIGSGPGALS-IALAKQSDFSIRALDFSKHMNEIALKNI----ADANLN 92
Query: 188 YNVGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 244
+ I ++ I+ D+I + + F ED+ +IL G I
Sbjct: 93 DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150
Query: 245 ASG 247
+
Sbjct: 151 GNK 153
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 40.3 bits (94), Expect = 0.002
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 16/152 (10%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEI-LKDCDKLDKCYNVGIQDF 195
V+D+ AGIG +S + K+ +E+ + E I L + YN D
Sbjct: 128 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN---MDN 184
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 255
+ D +LM +F+ I II + V K +
Sbjct: 185 RDFPGENIADR-----ILM-GYVVRTHEFIPKALSIAKDGAIIHYHNTVPE--KLMPREP 236
Query: 256 DSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287
+ R ++ K N +K ++P
Sbjct: 237 FETFKRITKEYGYDVEKLNELKIKR----YAP 264
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 39.4 bits (92), Expect = 0.002
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK--IDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
+ RVLD+G G G + + L + + +D ++ A+ L +
Sbjct: 52 QPE-RVLDLGCGEGWLLRALADRGIEAVGVDG---DRTLVDAARAA-GAGEVHLASYAQL 106
Query: 191 GIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
YD+I + L+ +DII+ L+ + +L G ++I
Sbjct: 107 AEAKVPVGK---DYDLICANFALLH---QDIIELLSAMRTLLVPGGALVI 150
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 39.7 bits (92), Expect = 0.003
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 107 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158
+SS I + +Y K VLDVG G G +S AK
Sbjct: 30 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKV-VLDVGCGTGILS-MFAAKAGA 87
Query: 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMF 215
K L S+ + QA + I +KL+ + I+ K E++++ K DVI +W+ F
Sbjct: 88 KKVLGVDQSEILYQAMDIIRL--NKLEDTITL-IKG-KIEEVHLPVEKVDVIISEWMGYF 143
Query: 216 ILDEDIIK-FLNLCKQILNKNGIIII 240
+L E ++ L + L K G +
Sbjct: 144 LLFESMLDSVLYAKNKYLAKGGSVYP 169
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 39.8 bits (92), Expect = 0.003
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
R + +G G ++ LL+ + +++++E E +++ I + +D NV D
Sbjct: 125 RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVI--EGLGVDGV-NVITGDE 181
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
D ++DV+ + L E + + ++ II +
Sbjct: 182 TVIDGL-EFDVLMVAA-----LAEPKRRVFRNIHRYVDTETRIIYRT 222
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 39.8 bits (93), Expect = 0.003
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 27/161 (16%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
G ++DVG G+G + A + K + ++ + + +VG
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPT--------IKGVNFDLPHVISEAPQFPGVTHVGGD 252
Query: 194 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 252
FK + D I ++W+L D+ L C L +G +++ +
Sbjct: 253 MFKE----VPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN 308
Query: 253 DDEDSSVV--------------RSLPQFCLLFSKANLKCVK 279
R +F L A VK
Sbjct: 309 PSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVK 349
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 39.0 bits (91), Expect = 0.004
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
RVLD+GAG G + + + + ++ + + +E A + NV Q
Sbjct: 24 RVLDIGAGAGHTA-LAFSPYVQECIGVDATKEMVEVASSFAQE-----KGVENVRFQQGT 77
Query: 197 PEDL---NIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS---GVKN 250
E L + +D+I ++ D+ K + ++L ++G ++ D+ A +
Sbjct: 78 AESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 135
Query: 251 EYDD----EDSSVVR--SLPQFCLLFSKANLKCVKSEK 282
+ D S VR SL ++ +FS L +K
Sbjct: 136 FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 39.4 bits (91), Expect = 0.004
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 15/134 (11%)
Query: 122 LSSLYCQK--KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILK 179
L S+YC K D K +VL + G G + + + + I + E K
Sbjct: 34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK 93
Query: 180 ------------DCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFIL-DEDIIKFLN 226
D + + + + K+++I Q+ + + +N
Sbjct: 94 LNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMN 153
Query: 227 LCKQILNKNGIIII 240
++ G ++I
Sbjct: 154 NLSELTASGGKVLI 167
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 39.4 bits (92), Expect = 0.004
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 27/161 (16%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
G T ++DVG G G ++ ++AK+ I +++D ++G
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKYPS--------INAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 194 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEY 252
F + K D I+I+W+ DE +K L C L +G +I+ + + +
Sbjct: 255 MFDG----VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS 310
Query: 253 DDEDSSVV--------------RSLPQFCLLFSKANLKCVK 279
+ R+ +F L + + K
Sbjct: 311 IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 39.2 bits (90), Expect = 0.004
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 13/142 (9%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
++ VLD+G G G +K+ + + ++Q ++ ++ D Y
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 189 NVGIQDF-----------KPEDLNIKYDVIWIQWVLMFILD--EDIIKFLNLCKQILNKN 235
+ K D + +D+ Q+V + + E L + L+
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148
Query: 236 GIIIIKDNVASGVKNEYDDEDS 257
G I + + + ++
Sbjct: 149 GYFIGTTPNSFELIRRLEASET 170
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 37.8 bits (88), Expect = 0.009
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 135 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE--EILKDCDKLDKCYNVGI 192
K +++D+ +G G I L + KI +E + + AK + D++ + +
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQI-EIIEYDL 108
Query: 193 QDFKPEDLNIKYDVI 207
+ + D++
Sbjct: 109 KKITDLIPKERADIV 123
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 37.8 bits (88), Expect = 0.010
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKDCDKLDKCY 188
G RVLDVG GIG+ + LA D I + S + QA L
Sbjct: 61 SG-DRVLDVGCGIGKPAVR-LATARDVRVTGISI---SRPQVNQANARATA--AGLANRV 113
Query: 189 NVGIQDFKPEDLNI---KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
D DL +D +W L + D + L ++L G + I D
Sbjct: 114 TFSYADA--MDLPFEDASFDAVWALESLHHMPDRG--RALREMARVLRPGGTVAIAD 166
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 37.4 bits (87), Expect = 0.010
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
+LD+G G G+IS LA + ++ +S+ I A+
Sbjct: 29 QEDD-EILDIGCGSGKISL-ELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA- 85
Query: 192 IQDFKP---EDLNIK---YDVIWIQWVLMFILD-EDIIKFLNLCKQILNKNGIIII 240
+FK L+ +D +Q L + D ++ + + ++L + +
Sbjct: 86 --EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.8 bits (88), Expect = 0.011
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDK----IDLLEQSSKFIEQAKEEILKD--CDKLDK 186
PG TR+LD+G+G G + A+ ID+ SS F QAK + +++
Sbjct: 36 PG-TRILDLGSGSGEMLCT-WARDHGITGTGIDM---SSLFTAQAKRRAEELGVSERVH- 89
Query: 187 CYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
D N K DV V + L Q L GI++I
Sbjct: 90 ---FIHNDAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLAQSLKPGGIMLI 138
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 37.9 bits (87), Expect = 0.012
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Query: 103 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162
ML+ D + + ++++ K GKT VLDVG G G ++ A+ +
Sbjct: 41 MLS--------DRVRMDAYFNAVFQNKHHFEGKT-VLDVGTGSGILA-IWSAQAGARKVY 90
Query: 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDII 222
+++K + A+ + + LD V + L K DVI +W+ F+L E +
Sbjct: 91 AVEATKMADHARALVKA--NNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMF 148
Query: 223 KFLNLCKQILNKNGIIIIKD 242
+ + K ++
Sbjct: 149 DSVISARDRWLKPTGVMYPS 168
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 37.8 bits (87), Expect = 0.014
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLL---AKHFDKIDLLEQSSKFIEQAKEEILKDCDKL 184
Q +D VLDVG G G +S + A+ ++ + K L D +
Sbjct: 152 QNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 211
Query: 185 DKCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241
K E++++ + D+I + + + +E +++ K+ L +G +
Sbjct: 212 IPG--------KVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 37.7 bits (87), Expect = 0.015
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 128 QKKSDPGKTRVLDVGAGIGRISKYLL---AKHFDKIDLLEQSSKFIEQAKEEILKDCDKL 184
Q +D VLDVG G G +S + A+ ++ + K L D +
Sbjct: 44 QNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVV 103
Query: 185 DKCYNVGIQDFKPEDLNI--KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241
K E++++ + D+I + + + +E +++ K+ L +G +
Sbjct: 104 IPG--------KVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 37.6 bits (88), Expect = 0.016
Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 39/167 (23%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKH-------FDKIDLLEQSSKFIEQAKEEILKDCDKLDK 186
V DVG G G +L +H D + + + + +
Sbjct: 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLD----RAEV---VARHRLDAPDVAG---- 232
Query: 187 CYNVGIQ--DF---KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIK 241
+ DF P DV ++ +L DED ++ L C++++ +G +++
Sbjct: 233 --RWKVVEGDFLREVP-----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285
Query: 242 DNVASGVKNEYDDEDSSVV---------RSLPQFCLLFSKANLKCVK 279
D V + + ++ + R+ + LF+ A L+ +
Sbjct: 286 DAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 37.1 bits (86), Expect = 0.016
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 26/160 (16%)
Query: 88 EVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGR 147
E+Y + D M + L RVLD+G G G+
Sbjct: 16 RSWEFYDRIARAYDSM-YETPKWKLYHRLIGSFLEEYL-------KNPCRVLDLGGGTGK 67
Query: 148 ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD-- 205
S +L + F+ + L++ S + +E A+E+ +K+ + EDL
Sbjct: 68 WSLFLQERGFEVV-LVDPSKEMLEVAREKGVKNVVEAK-----------AEDLPFPSGAF 115
Query: 206 --VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDN 243
V+ + VL ++ ++D K + +++L +G++I +
Sbjct: 116 EAVLALGDVLSYVENKD--KAFSEIRRVLVPDGLLIATVD 153
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 36.8 bits (86), Expect = 0.016
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 28/120 (23%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ- 193
+L++G IG S A D + +E++ I+ AK+ L ++ ++
Sbjct: 74 NILEIGTAIG-YSSMQFASISDDIHVTTIERNETMIQYAKQ-NLATYHFENQ-----VRI 126
Query: 194 ------DFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ + YD+I+I D KF + +L G++I DNV
Sbjct: 127 IEGNALEQFENVNDKVYDMIFI--------DAAKAQSKKFFEIYTPLLKHQGLVIT-DNV 177
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 36.6 bits (84), Expect = 0.019
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
P RVL+ G G G + + + S + ++ A+
Sbjct: 48 PQT-RVLEAGCGHGPDA-ARFGPQAARWAAYDFSPELLKLARA 88
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 37.2 bits (86), Expect = 0.020
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC-----DKLDKC 187
GK VL +G G G I ++ + ++E I+ K+ + K C + C
Sbjct: 188 TGK-DVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDC 246
Query: 188 YNVGIQDF-----KPEDLNIKYDVIWIQWVLMFILDEDIIK---------FLNLCKQILN 233
Y V I+D + ++D + I + + + L+L ++L
Sbjct: 247 YQVLIEDCIPVLKRYAKEGREFDYV-INDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK 305
Query: 234 KNGIII 239
++G
Sbjct: 306 QDGKYF 311
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 36.1 bits (84), Expect = 0.025
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 41/165 (24%)
Query: 97 PPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPG------------KTRVLDVGAG 144
++ +L G L +T S ++ K D G +LD+G G
Sbjct: 11 VKIVEDILRGK----KLKFKT----DSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCG 62
Query: 145 IGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---- 200
G I LA + + + + I+ AKE I KL+ N I+ DL
Sbjct: 63 YGVIGIA-LADEVKSTTMADINRRAIKLAKENI-----KLNNLDNYDIR-VVHSDLYENV 115
Query: 201 -NIKYDVIWIQWVLM---FILDEDII-KFLNLCKQILNKNGIIII 240
+ KY+ I ++++ + + K++L NG I +
Sbjct: 116 KDRKYNKII-----TNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 36.8 bits (85), Expect = 0.028
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 27/162 (16%)
Query: 134 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
G ++DVG G G ++K + + + + + VG
Sbjct: 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN--------ENLNFVGGD 244
Query: 194 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQ---ILNKNGIIIIKDNVASGVKN 250
FK D + ++WVL DE +K L K+ K+G +II D +
Sbjct: 245 MFKSIP---SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD 301
Query: 251 EYDDEDSSVV-------------RSLPQFCLLFSKANLKCVK 279
+ + + R+ ++ L A K
Sbjct: 302 DRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYK 343
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 36.0 bits (84), Expect = 0.030
Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 31/141 (21%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
V+ G G+G + + A+ ++ +++ +E A+ + D +D+ +
Sbjct: 59 LVVVPGDGLG-CASWWFARAISISSRVVMIDPDRDNVEHARRML-HDNGLIDR-----V- 110
Query: 194 DFKPED-LNI-----KYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ + D L I D++ F+ D + L + L KN ++I N
Sbjct: 111 ELQVGDPLGIAAGQRDIDIL-------FM-DCDVFNGADVLERMNRCLAKNALLIA-VNA 161
Query: 245 -ASG-VKNEYDDEDSSVVRSL 263
G V ++D +++ +R
Sbjct: 162 LRRGSVAESHEDPETAALREF 182
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 35.6 bits (82), Expect = 0.032
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 192
V+D G G + + LA K+ + + + + + + + + G
Sbjct: 22 DESI-VVDATMGNGNDTAF-LAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 79
Query: 193 QDFKPEDLNIKYDVIWIQWVLMFILDED---------IIKFLNLCKQILNKNGIIII 240
++ ++ + + L ++ D ++ + L G + I
Sbjct: 80 ENLDH---YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 35.8 bits (83), Expect = 0.039
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 26/142 (18%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 191
+ LD+G G S LA ++ E ++ E + + + + K +
Sbjct: 72 KALDLGTFTG-YSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKP 129
Query: 192 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ + +DV + D E+ + C Q+L GI+ + V
Sbjct: 130 ALETLDELLAAGEAGTFDVAVV--------DADKENCSAYYERCLQLLRPGGILAV-LRV 180
Query: 245 -ASG--VKNEYDDEDSSVVRSL 263
G ++ D + VR+L
Sbjct: 181 LWRGKVLQPPKGDVAAECVRNL 202
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 36.1 bits (83), Expect = 0.040
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 29/131 (22%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEE-ILKDCDKLDKCYN 189
D K R+ +G G +++Y + + ++E ++ ++E + ++
Sbjct: 87 DASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV----K 142
Query: 190 VGIQD---FKPEDLNIKYDVIWIQWVLMFILD----------EDIIKFLNLCKQILNKNG 236
+ + D DVI I D ++F C + L G
Sbjct: 143 IRVDDARMVAESFTPASRDVI--------IRDVFAGAITPQNFTTVEFFEHCHRGLAPGG 194
Query: 237 IIIIKDNVASG 247
+ + N
Sbjct: 195 LYVA--NCGDH 203
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 35.8 bits (83), Expect = 0.041
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 41/155 (26%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKE------------------ 175
R++++G G S A KI + S ++ A++
Sbjct: 63 RIIEIGTFTG-YSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 176 -EILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQI 231
E L L + D+ ++ D E+ + L ++
Sbjct: 122 LETL---QVLIDSKSAPSWASDFAFGPSSIDLFFL--------DADKENYPNYYPLILKL 170
Query: 232 LNKNGIIIIKDNVA-SG--VKNEYDDEDSSVVRSL 263
L G++I DNV G + + + +R
Sbjct: 171 LKPGGLLIA-DNVLWDGSVADLSHQEPSTVGIRKF 204
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 36.1 bits (83), Expect = 0.046
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 10/173 (5%)
Query: 72 IFPYFTEKDGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKK- 130
+ E S + + T + +S+ +D S L +L +
Sbjct: 172 LLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGK-VDP-ASLLLLEALQERLGP 229
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
+VLD+GAG G ++ LA+ ++ +E + ++ + + K ++
Sbjct: 230 EGVRGRQVLDLGAGYGALTLP-LARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSD 288
Query: 191 GIQDFKPEDLNIKYDVIWI---QWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ E ++D+I V ++ + F+N+ L G+ +
Sbjct: 289 VDEALTEEA---RFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 35.3 bits (82), Expect = 0.051
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 194
R+L++G IG S +A+ I +E+ + E+A + + L+ + D
Sbjct: 57 RILEIGTAIGY-SAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--GLESRIELLFGD 113
Query: 195 ----FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ +L +DV++I D +F ++ ++ G+I+ DNV
Sbjct: 114 ALQLGEKLELYPLFDVLFI--------DAAKGQYRRFFDMYSPMVRPGGLILS-DNV 161
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 35.0 bits (81), Expect = 0.052
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG- 191
+DVG G G ++ LA ++ ++++ +A + + NV
Sbjct: 33 KNDV-AVDVGCGTGGVT-LELAGRVRRVYAIDRN----PEAISTTEMNLQRHGLGDNVTL 86
Query: 192 IQDFKPEDLN--IKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ PE L D+ + ++ + L + K L G II+
Sbjct: 87 MEGDAPEALCKIPDIDIAVV-----GGSGGELQEILRIIKDKLKPGGRIIV 132
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 35.4 bits (81), Expect = 0.072
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 103 MLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDL 162
ML D + + +++ K K VLDVG G G +S AKH K +
Sbjct: 16 MLQ--------DTVRTLSYRNAIIQNKDLFKDKI-VLDVGCGTGILS-MFAAKHGAKHVI 65
Query: 163 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMFILDE 219
S IE AKE + + + ++ K ED+++ K D+I +W+ F+L E
Sbjct: 66 GVDMSSIIEMAKELVEL--NGFSDKITL-LRG-KLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 220 DIIKFLNLCKQ-ILNKNGIII 239
++ + + L + G+I
Sbjct: 122 SMMDTVLYARDHYLVEGGLIF 142
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 35.0 bits (81), Expect = 0.074
Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 26/142 (18%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 191
+VL++G G S ++ ++ + + + + A ++ + K +G
Sbjct: 63 KVLELGTFTG-YSALAMSLALPDDGQVITCDINEGWTKHAHPYW-REAKQEHKIKLRLGP 120
Query: 192 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ E ++D I+I D + + + L +++ G+I I DN+
Sbjct: 121 ALDTLHSLLNEGGEHQFDFIFI--------DADKTNYLNYYELALKLVTPKGLIAI-DNI 171
Query: 245 A-SG--VKNEYDDEDSSVVRSL 263
G + + ++ L
Sbjct: 172 FWDGKVIDPNDTSGQTREIKKL 193
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 34.6 bits (80), Expect = 0.081
Identities = 19/194 (9%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 86 YSEVTEY---YSNVPPTIDGMLNGYSSISDLDI-QTSNQFLSSLYCQKKSDPGKTRVLDV 141
+ + Y + + + + + Q L++L + + +
Sbjct: 5 FEYLRTYVESTTETDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGST-GAIAI 63
Query: 142 GAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ---DF 195
G + + + ++ S+ QAK + ++ + D
Sbjct: 64 TPAAG-LVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLLSRPLDV 121
Query: 196 KPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VK 249
N Y +++ D+ ++ +L + G +++ + G
Sbjct: 122 MSRLANDSYQLVFG--------QVSPMDLKALVDAAWPLLRRGGALVL-ADALLDGTIAD 172
Query: 250 NEYDDEDSSVVRSL 263
D D+ R
Sbjct: 173 QTRKDRDTQAARDA 186
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 34.6 bits (80), Expect = 0.11
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 28/153 (18%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
+++G G S A KI ++ + + E I K +D +
Sbjct: 82 NTMEIGVYTG-YSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFREG 138
Query: 194 D--------FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKD 242
K E + YD I++ D ++ + + ++ G+I D
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFV--------DADKDNYLNYHKRLIDLVKVGGVIGY-D 189
Query: 243 NV-ASG-VKNEYDDEDSSVVRSLPQFCLLFSKA 273
N +G V D VR F L +KA
Sbjct: 190 NTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKA 222
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 34.6 bits (80), Expect = 0.12
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIEL 446
R + YR + + EF QL +EL
Sbjct: 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVEL 133
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 34.5 bits (78), Expect = 0.13
Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 2/157 (1%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDK-IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
VLD+G +G ++ + K + L+ S+ I A+ + ++ + +
Sbjct: 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR-QNIRHYLSEELRLPPQTLEG 107
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 255
P + + + + L+ + +NV N D
Sbjct: 108 DPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDR 167
Query: 256 DSSVVRSLPQFCLLFSKANLKCVKSEKGEFSPMDLWE 292
D V P++ ++ + K V G+ ++
Sbjct: 168 DDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 34.1 bits (78), Expect = 0.15
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
+ D+GAG G S L + +E S +QA
Sbjct: 37 VIADIGAGTGGYSVALANQGLFVY-AVEPSIVMRQQAVV 74
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 33.8 bits (78), Expect = 0.15
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 26/142 (18%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 191
+V+D+G G S + + + K AKE + DK +
Sbjct: 67 KVIDIGTFTG-YSAIAMGLALPKDGTLITCDVDEKSTALAKE-YWEKAGLSDKIGLRLSP 124
Query: 192 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
+ + +YD+I+I D + + ++L + G+I + DNV
Sbjct: 125 AKDTLAELIHAGQAWQYDLIYI--------DADKANTDLYYEESLKLLREGGLIAV-DNV 175
Query: 245 -ASG--VKNEYDDEDSSVVRSL 263
G E E++ ++R
Sbjct: 176 LRRGQVADEENQSENNQLIRLF 197
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 33.8 bits (78), Expect = 0.17
Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 26/142 (18%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKC-YNVG- 191
+VL++G G S +A +I +Q AK+ + +K +G
Sbjct: 75 QVLEIGVFRG-YSALAMALQLPPDGQIIACDQDPNATAIAKK-YWQKAGVAEKISLRLGP 132
Query: 192 ----IQDFKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV 244
++ ++D+I+I D + ++ + +L + G+++I DNV
Sbjct: 133 ALATLEQLTQGKPLPEFDLIFI--------DADKRNYPRYYEIGLNLLRRGGLMVI-DNV 183
Query: 245 -ASG--VKNEYDDEDSSVVRSL 263
G + + + + V++
Sbjct: 184 LWHGKVTEVDPQEAQTQVLQQF 205
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 33.9 bits (77), Expect = 0.20
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 107 YSSISDLDIQTS--------NQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD 158
+ S + I + +S++ + K VLDVG+G G + +
Sbjct: 32 FDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKV-VLDVGSGTGILCMFAAKAGAR 90
Query: 159 KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNI---KYDVIWIQWVLMF 215
K+ +E SS I +I+K +KLD + I+ K E++ + K D+I +W+
Sbjct: 91 KVIGIECSS--ISDYAVKIVKA-NKLDHVVTI-IKG-KVEEVELPVEKVDIIISEWMGYC 145
Query: 216 ILDEDIIKFLNLCKQ-ILNKNGIIIIK 241
+ E ++ + + L +G+I
Sbjct: 146 LFYESMLNTVLHARDKWLAPDGLIFPD 172
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 34.1 bits (78), Expect = 0.20
Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
+ + ++D+G G G I LL K+ K+ +++S + ++ + + +
Sbjct: 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF 279
Query: 191 GIQDFKPEDLNIKYDVIW------IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
I + +++ + Q + D + + ++ L NG + I
Sbjct: 280 MINNALSGVEPFRFNAVLCNPPFHQQHA---LTDNVAWEMFHHARRCLKINGELYI 332
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 33.8 bits (78), Expect = 0.28
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFIREYCY-------QGPRSVGCDL 567
R PR + R S +G+ AL SYF+ G R D
Sbjct: 839 RQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDR 898
Query: 568 IIFHIQFFSCLHTTQS-------EICSRAFRTTVLFQIKNVDNFRSNRS 609
I ++ T + F + V+ Q ++ ++ R+
Sbjct: 899 WISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRRN 947
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 33.3 bits (76), Expect = 0.31
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIELSFTTRDDVMRLIEELLCYCL------NIPTR 471
R F+I CYR ES EFT L++ T ++ + +E++ + L
Sbjct: 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELV 210
Query: 472 TFSRISYNDAISLYGSDKPDLRYDCKIMIAIKEQPPW 508
T S + Y D + + K DL M W
Sbjct: 211 TESSVVYGDTVDV---MKGDLELASGAMGPHFLDEKW 244
>3mem_A Putative signal transduction protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
aquaeolei}
Length = 457
Score = 33.4 bits (76), Expect = 0.36
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 6/149 (4%)
Query: 41 LLRDAYGQVQVIVPNHQVPNIYRTSTLASLPIFPYFTEK-----DGNRSHYSEVTEYYSN 95
LL D G +Q I + + ++ + + + +
Sbjct: 37 LLSDDQGNLQAICRRNDMLDLEALNKRLGRDLRMMQRREQVRVRQKAGLQELPALPSLTG 96
Query: 96 VPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAK 155
P +D ++ ++ L++ + L + K D IS L
Sbjct: 97 WPTVVDRRVDELEAV-ALELGEQDLGLMMPAEDFRQLTAKAARHDFAVDTANISVNLDNH 155
Query: 156 HFDKIDLLEQSSKFIEQAKEEILKDCDKL 184
D+ L +F ++ L+D +L
Sbjct: 156 AADRDQLHSAIKRFTGLRIQQRLEDTLEL 184
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 32.6 bits (75), Expect = 0.38
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 26/122 (21%)
Query: 137 RVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 193
+ ++VG G S L A KI ++ + E I K ++ N
Sbjct: 73 KTIEVGVFTG-YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--GVEHKINFIES 129
Query: 194 D--------FKPEDLNIKYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKD 242
D + ++ YD ++ D + IK+ +++ GI+ D
Sbjct: 130 DAMLALDNLLQGQESEGSYDFGFV--------DADKPNYIKYHERLMKLVKVGGIVAY-D 180
Query: 243 NV 244
N
Sbjct: 181 NT 182
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 32.5 bits (74), Expect = 0.38
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
+LDVG+ + L+ + E + A + + + +K
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNV-EAHGLKEKIQVRL 72
Query: 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + VI I + + I + L L +I+
Sbjct: 73 ANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.9 bits (75), Expect = 0.39
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 7/76 (9%)
Query: 85 HYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSD--PGKTRVLDVG 142
HY + + D + Y ++ + P ++D G
Sbjct: 70 HYGIGPVDRAAL---GDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDD-TLVDAG 125
Query: 143 AGIGRISKYLLAKHFD 158
G G + F
Sbjct: 126 CGRGGSMVM-AHRRFG 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 32.6 bits (74), Expect = 0.45
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKE 175
R+ D+GAG G + A+ ++ L E+S + E A+
Sbjct: 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR 78
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 32.4 bits (73), Expect = 0.50
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFK 196
V D+GAG G +S L ++ +E + ++ E + + K +
Sbjct: 52 VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFK------VFIGD 105
Query: 197 PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKN 250
+ N + D++ + FL + + ++ V+
Sbjct: 106 VSEFNSRVDIVIMNPPFGSQRKHADRPFL---LKAFEISDVVYSIHLAKPEVRR 156
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 33.0 bits (76), Expect = 0.51
Identities = 12/108 (11%), Positives = 27/108 (25%), Gaps = 14/108 (12%)
Query: 515 RLPRRAGEPGFDSRRGPSFFGSVLGVWGALSLMSSYFI--------------REYCYQGP 560
PR + ++ +G + + + YF ++
Sbjct: 844 LRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENH 903
Query: 561 RSVGCDLIIFHIQFFSCLHTTQSEICSRAFRTTVLFQIKNVDNFRSNR 608
F Q + F + + QI +V ++ R
Sbjct: 904 HLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRR 951
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 32.4 bits (74), Expect = 0.56
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 15/116 (12%)
Query: 132 DPGKTRVLDVGAGIGRISKYLLAKHFD-KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
K +VLDVG G G +S ++ L + S+ +E ++ + +
Sbjct: 194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-----AANGVEGE 248
Query: 191 GIQDFKPEDLNIKYDVIW------IQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
++ ++D+I M + + + LN G + I
Sbjct: 249 VFASNVFSEVKGRFDMIISNPPFHDG---MQTSLDAAQTLIRGAVRHLNSGGELRI 301
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 32.6 bits (75), Expect = 0.60
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 418 RYFQIARCYRDESTRPD--RQPEFTQLDIEL 446
+++ I +C+R E R+ E Q ++++
Sbjct: 125 KWYSIPQCWRYE--AITRGRRREHYQWNMDI 153
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 32.6 bits (74), Expect = 0.62
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 418 RYFQIARCYRDESTRPDRQ--PEFTQL-----DIELSFTTRDDVMRLIEELL 462
+ F I RC+R E + D+ + + +D + E LL
Sbjct: 226 KLFSIDRCFRRE-QKEDKSHLMTYHSASCAIAGEGVDI---NDGKAIAEGLL 273
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.72
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 15/42 (35%)
Query: 405 QQLKQLLMVGSVDRYFQIARCYRDESTRPDRQPEFT-QLDIE 445
Q LK+L S+ Y A D P + +E
Sbjct: 20 QALKKL--QASLKLY---A---------DDSAPALAIKATME 47
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 31.4 bits (72), Expect = 0.86
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 203 KYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VKNEYDDED 256
+D I+I D ++ + ++ +II DNV G + N +D
Sbjct: 133 PFDFIFI--------DADKQNNPAYFEWALKLSRPGTVIIG-DNVVREGEVIDNTSNDPR 183
Query: 257 SSVVRSL 263
+R
Sbjct: 184 VQGIRRF 190
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 32.3 bits (73), Expect = 0.91
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 418 RYFQIARCYRDESTRPDRQ--PEFTQL-----DIELSFTTRDDVMRLIEELL 462
+ F I RC+R E + D+ + + +D + E LL
Sbjct: 226 KLFSIDRCFRRE-QKEDKSHLMTYHSASCAIAGEGVDI---NDGKAIAEGLL 273
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 31.8 bits (72), Expect = 0.92
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 107 YSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQS 166
Y + + + Q +++ + L++G G GRI+ L + L+
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIAL-PLIARGYRYIALDAD 70
Query: 167 SKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDL---NIKYDVIWIQWVLMFILD 218
+ +E +++I K+ D + + + + + + D
Sbjct: 71 AAMLEVFRQKIAGVDRKVQ--VVQA--DA--RAIPLPDESVHGVIVVHLWHLVPD 119
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 31.4 bits (71), Expect = 0.92
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 133 PGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
G T V+D G G + +L L ++ + K I ++ L D + +D V
Sbjct: 22 EGDT-VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLID---RV 76
Query: 191 ----GIQDFKPEDLNIKYDVIWIQWVLMFILD-------EDIIKFLNLCKQILNKNGIII 239
+ ++ + + D E I+ L+ ++L GII
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
Query: 240 I 240
+
Sbjct: 137 V 137
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 31.4 bits (72), Expect = 0.99
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 40/139 (28%)
Query: 130 KSDPGKTRVLDVGAGIGRI----SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLD 185
++ V DVG G G I + L AK D+ ++S + A+E
Sbjct: 56 RAMVKPLTVADVGTGSG-ILAIAAHKLGAKSVLATDISDES---MTAAEE---------- 101
Query: 186 KCYNV---GIQDFK------PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNG 236
N GI D D++ K+D+ ++ IL E ++ + LN++G
Sbjct: 102 ---NAALNGIYDIALQKTSLLADVDGKFDL-----IVANILAEILLDLIPQLDSHLNEDG 153
Query: 237 IIIIKDNVASGVKNEYDDE 255
+I SG+ +
Sbjct: 154 QVI-----FSGIDYLQLPK 167
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 31.4 bits (71), Expect = 1.0
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
P R+LDVG+ + +LL + D E + + A + + + L +V
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE--HGLTSKIDVR 77
Query: 192 IQD-FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ + + D I I + + I LN L +++
Sbjct: 78 LANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 31.5 bits (71), Expect = 1.3
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 418 RYFQIARCYRDESTRPDRQ--PEFTQL-----DIELSFTTRDDVMRLIEELL 462
+ F I RC+R E + D+ + + +D + E LL
Sbjct: 226 KLFSIDRCFRRE-QKEDKSHLMTYHSASCAIAGEGVDI---NDGKAIAEGLL 273
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 31.5 bits (72), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIEL 446
RY Q+ +R E + R +F Q DI++
Sbjct: 123 RY-QMDVVFRGERAKDGRFRQFRQCDIDV 150
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 31.1 bits (71), Expect = 1.4
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 203 KYDVIWIQWVLMFILD---EDIIKFLNLCKQILNKNGIIIIKDNV-ASG--VKNEYDDED 256
+D+I+I D + +L + +II DNV G V + DE
Sbjct: 136 AFDLIFI--------DADKPNNPHYLRWALRYSRPGTLIIG-DNVVRDGEVVNPQSADER 186
Query: 257 SSVVRSL 263
VR
Sbjct: 187 VQGVRQF 193
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 30.8 bits (69), Expect = 1.5
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCD-KLDKCYN 189
PG +L+VG G G +S Y+L + ++E+ +++A + + + D +
Sbjct: 110 PG-MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 168
Query: 190 VGIQDFKPED 199
I DF +
Sbjct: 169 SDIADFISDQ 178
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 30.7 bits (69), Expect = 1.7
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 24/113 (21%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
+ P V D G G R++ + DL + CD
Sbjct: 63 RQRPASLVVADFGCGDCRLA-SSIRNPVHCFDLASLDPRVTV---------CD----MAQ 108
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
V ++D DV LM +I FL ++L G++ + +
Sbjct: 109 VPLED-------ESVDVAVFCLSLMGT---NIRDFLEEANRVLKPGGLLKVAE 151
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 30.9 bits (69), Expect = 1.8
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEI---------- 177
+PG VL+ G+G G +S +L ++ E + AK+
Sbjct: 102 DINPGD-TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS 160
Query: 178 -LKDCDKLDKCYNVGIQDFKPEDLNIKYDVI 207
+++ + I + ++ +D +
Sbjct: 161 HVEEWPDNVDFIHKDISGATEDIKSLTFDAV 191
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 31.1 bits (70), Expect = 1.8
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 418 RYFQIARCYRDESTRPDRQ--PEFTQL-----DIELSFTTRDDVMRLIEELL 462
+ F I RC+R E + D+ + + +D + E LL
Sbjct: 226 KLFSIDRCFRRE-QKEDKSHLMTYHSASCAIAGEGVDI---NDGKAIAEGLL 273
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 30.9 bits (69), Expect = 1.9
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE--EILKDCDKLDKCYNVGIQD 194
+V+D+ G+G L + +E++ + A+ +L + K ++
Sbjct: 96 KVVDLTGGLGIDF-IALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKE 154
Query: 195 FKPEDLNIKYDVIWI 209
+ P D I++
Sbjct: 155 YLPLIKTFHPDYIYV 169
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 30.4 bits (69), Expect = 2.0
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFD---KIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
G T VLDVG G G L+K K+ ++ + + A E++ K N
Sbjct: 37 EGMT-VLDVGTGAGFYLP-YLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-----LGLKN 89
Query: 190 VGIQDFKPEDLNIK---YDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 242
V + + + + D I++ + + + +KFL K++ + I D
Sbjct: 90 VEVLKSEENKIPLPDNTVDFIFMAFTFHEL--SEPLKFLEELKRVAKPFAYLAIID 143
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 30.5 bits (69), Expect = 2.0
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKE 175
PG+ +L+VGAG G + L ++ S + +
Sbjct: 36 PGE-SLLEVGAGTGYWLRRLPYPQKVGVEP---SEAMLAVGRR 74
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 30.4 bits (68), Expect = 2.0
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 130 KSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYN 189
+ G V+D G G G ++ + + + IE AK C
Sbjct: 47 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN----------CGG 96
Query: 190 VGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQI 231
V +++ KYD + ++ F++ +
Sbjct: 97 VNFMVADVSEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFET 138
>2jz5_A Uncharacterized protein VPA0419; GFT protein structure, NESG,
structural genomics, unknown function, PSI-2; NMR
{Vibrio parahaemolyticus rimd 2210633}
Length = 91
Score = 28.9 bits (64), Expect = 2.1
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 613 SSGEDVYRILILPKDLDSTNKKITEYKNLAKKAFNDVKMSTVKV-QDSLEWTNKLT 667
G++V + I + D+ ++ +Y LAK V+ + ++ ++S E T +
Sbjct: 9 KEGDEVADVTIFAETKDALESELAKYIELAKSVCAGVEYNVSELTEESKELTARFK 64
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 30.0 bits (67), Expect = 2.8
Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 137 RVLDVGAGIGRISKYLLAKH-FDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 195
V+D+ AGIG + L + +E++ E I + +D
Sbjct: 122 VVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181
Query: 196 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDE 255
+ +D V+M + KFL+ + L G+I + VA K Y+
Sbjct: 182 ELKD--------VADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETVAE--KIMYERP 230
Query: 256 DSSVVRSLPQFCLLFSKANLKCVKSEKGEFSP 287
+ + ++ +K ++P
Sbjct: 231 IERLKFYAEKNGYKLIDYEVRKIKK----YAP 258
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 30.5 bits (69), Expect = 3.0
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 751 SAHHPFTQPHPEDEHLLSSNPLEVRGLHYDLVLN---GNEIGGGSIRIHSSELQES---- 803
+ H D + + N +V+ H L LN + G + ++
Sbjct: 4 ATHQHANVSKLTDAYTYA-NYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPL 62
Query: 804 ILH--FLNIETSSLQ 816
IL L I +
Sbjct: 63 ILDTRDLVIHRVMAK 77
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.9 bits (67), Expect = 3.3
Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 133 PGKTRVLDVGAGIGRISKYLLAKHF-DKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVG 191
R+ D+G+ + + + E + A++++ + ++
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV-RSSGLTEQIDVRK 78
Query: 192 IQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 240
+ D I I + I L L +I+
Sbjct: 79 GNGLAVIEKKDAIDTIVIAG----MGGTLIRTILEEGAAKLAGVTKLIL 123
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 30.0 bits (68), Expect = 3.4
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 418 RYFQIARCYRDESTRPDRQPEFTQLDIEL 446
+ + YR QL +E
Sbjct: 72 KVWYADFVYR---YSGSDLVAEYQLGLEK 97
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 29.9 bits (66), Expect = 3.5
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 18/136 (13%)
Query: 137 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI---- 192
RVL+VG G+ + + D+ ++E + ++ ++ + + V
Sbjct: 63 RVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD------WAPRQTHKVIPLKGL 116
Query: 193 -QDFKPEDLNIKYDVI----WIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASG 247
+D P + +D I + + N ++L G++ + + G
Sbjct: 117 WEDVAPTLPDGHFDGILYDTYPLSEETW-HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 175
Query: 248 --VKNEYDDEDSSVVR 261
+K++Y D
Sbjct: 176 ELMKSKYSDITIMFEE 191
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 30.0 bits (68), Expect = 3.7
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 418 RYFQIARCYRDESTRPDRQP------EFTQLDIEL 446
R+ R YR E TQ+ IE
Sbjct: 119 RWCYCERVYRRTDDPASLSWASGKAAESTQVGIER 153
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein
structure initiative, structural GEN pathogenic protozoa
consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB:
3bwb_A*
Length = 304
Score = 29.6 bits (67), Expect = 3.7
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 25/125 (20%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKC 187
S P RVL +G G G + + +L +H + DL++ + +EQ+K+ + L D
Sbjct: 92 SHPKPERVLIIGGGDGGVLREVL-RHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPR 150
Query: 188 YNVGIQD---FKPEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNK 234
V + D F + + YDV+ I+D D F +IL
Sbjct: 151 ATVRVGDGLAFVRQTPDNTYDVV--------IIDTTDPAGPASKLFGEAFYKDVLRILKP 202
Query: 235 NGIII 239
+GI
Sbjct: 203 DGICC 207
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 29.6 bits (66), Expect = 4.8
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 133 PGKTRVLDVGAGIGRISKYL--LAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
G R++D G G G + L K+ E+ +F + A+ + K L + +
Sbjct: 112 EGD-RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTI 168
Query: 191 GIQDFKPEDLNIKYDVI 207
++D D +
Sbjct: 169 KVRDISEGFDEKDVDAL 185
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.5 bits (66), Expect = 5.5
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 403 SPQQLKQLLMVGSVD-----RYFQIARCYRDESTRPDRQPEFTQLD 443
+ + L + +YF I R +R+E+ EF Q++
Sbjct: 329 TSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIE 374
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 29.5 bits (67), Expect = 5.7
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 418 RYFQIARCYRDESTRPD--RQPEFTQLDIEL 446
R++ + +R E P R E Q + ++
Sbjct: 101 RWYSFPKVWRYE--EPQAGRYREHYQFNADI 129
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta
barrel, protein structure initia PSI-2; 1.91A
{Archaeoglobus fulgidus dsm 4304}
Length = 136
Score = 28.1 bits (62), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 771 PLEVRGLHYDLVLNGNEIGGGSI 793
P+ V G HY + +NG ++ G
Sbjct: 33 PIVVSGYHYTIEMNGVKVADGYE 55
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.8 bits (64), Expect = 8.3
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 14/109 (12%)
Query: 131 SDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNV 190
P RVL+ G + H + EI L
Sbjct: 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGV----------EIDPKALDLPPWAEG 85
Query: 191 GIQDFKPEDLNIKYDVIWIQ---WVLMFILDEDIIKFLNLCKQILNKNG 236
+ DF + +D+I + + ++ + I K + K
Sbjct: 86 ILADFLLWEPGEAFDLI-LGNPPYGIVGEASKYPIHVFKAVKDLYKKAF 133
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.8 bits (64), Expect = 8.3
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 129 KKSDPGKTRVLDVGAGIGRISKYLLAK-HFDKIDLLEQSSKFIEQAKEEILKDCDKL 184
P + +VLD+ G+G S K + LLE+ S + + ++
Sbjct: 53 TYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQI 109
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 28.4 bits (64), Expect = 9.0
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 137 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 193
VL VG G G I + L K+ + ID+ E IE +K DK NV I+
Sbjct: 81 NVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 139
Query: 194 D-FK-PEDLNIKYDVIWIQWVLMFILD--------EDIIK--FLNLCKQILNKNGIII 239
D K E++ YDVI I+D E + F L NG +
Sbjct: 140 DASKFLENVTNTYDVI--------IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 189
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 28.4 bits (64), Expect = 9.3
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 24/118 (20%)
Query: 137 RVLDVGAGIGRISKYLLAKH--FDKIDLLEQSSKFIEQAKEEILKDCDKL-DKCYNVGIQ 193
VL VG G G I + L K+ + ID+ E IE +K DK NV I+
Sbjct: 119 NVLVVGGGDGGIIRELC-KYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 177
Query: 194 D-FK-PEDLNIKYDVIWIQWVLMFILD-EDII---------KFLNLCKQILNKNGIII 239
D K E++ YDVI I+D D I F L NG +
Sbjct: 178 DASKFLENVTNTYDVI--------IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCV 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.416
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,620,747
Number of extensions: 837250
Number of successful extensions: 2083
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1939
Number of HSP's successfully gapped: 226
Length of query: 883
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 781
Effective length of database: 3,853,851
Effective search space: 3009857631
Effective search space used: 3009857631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)