Query psy8375
Match_columns 105
No_of_seqs 188 out of 1053
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:02:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 3.7E-37 8.1E-42 229.7 8.2 104 1-104 272-375 (375)
2 PTZ00466 actin-like protein; P 100.0 1.8E-36 3.9E-41 226.4 9.4 104 1-104 277-380 (380)
3 PTZ00281 actin; Provisional 100.0 2.6E-36 5.6E-41 225.1 7.9 104 1-104 273-376 (376)
4 KOG0676|consensus 100.0 4.1E-36 9E-41 222.7 6.8 104 1-104 269-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1.8E-35 4E-40 220.6 7.8 104 1-104 275-378 (378)
6 PF00022 Actin: Actin; InterP 100.0 4.7E-35 1E-39 217.8 8.9 104 1-104 289-393 (393)
7 PTZ00280 Actin-related protein 100.0 3.8E-34 8.3E-39 215.5 8.9 101 2-102 292-408 (414)
8 smart00268 ACTIN Actin. ACTIN 100.0 1.7E-33 3.8E-38 208.7 8.2 103 2-104 271-373 (373)
9 KOG0679|consensus 100.0 9E-33 1.9E-37 203.3 6.8 103 1-104 320-426 (426)
10 KOG0680|consensus 100.0 5.1E-32 1.1E-36 196.3 8.7 105 1-105 296-400 (400)
11 COG5277 Actin and related prot 100.0 2.2E-31 4.8E-36 202.0 9.0 104 1-104 341-444 (444)
12 cd00012 ACTIN Actin; An ubiqui 100.0 2.7E-30 5.8E-35 191.6 8.6 102 1-102 268-371 (371)
13 KOG0681|consensus 99.9 1.3E-23 2.8E-28 160.3 7.5 103 1-103 537-639 (645)
14 KOG0677|consensus 99.9 6.6E-23 1.4E-27 146.3 7.2 102 1-102 273-386 (389)
15 KOG0678|consensus 99.8 1.6E-19 3.4E-24 131.8 2.9 100 2-101 294-407 (415)
16 KOG0797|consensus 99.6 7.9E-16 1.7E-20 117.5 3.7 103 2-104 505-615 (618)
17 PF06723 MreB_Mbl: MreB/Mbl pr 99.2 2.4E-11 5.1E-16 89.8 4.1 68 2-77 252-320 (326)
18 TIGR00904 mreB cell shape dete 99.1 3.9E-11 8.5E-16 88.2 3.4 68 2-77 258-326 (333)
19 PRK13930 rod shape-determining 99.1 6.8E-11 1.5E-15 86.7 3.5 68 2-77 259-327 (335)
20 PRK13929 rod-share determining 99.1 9.3E-11 2E-15 86.6 3.3 65 3-75 258-323 (335)
21 PRK13927 rod shape-determining 99.1 9E-11 2E-15 86.2 3.1 68 2-77 255-323 (334)
22 PRK13928 rod shape-determining 98.9 1.5E-09 3.2E-14 80.0 3.8 67 3-77 255-322 (336)
23 COG1077 MreB Actin-like ATPase 98.4 8.5E-08 1.8E-12 70.6 2.0 66 2-75 262-328 (342)
24 TIGR02529 EutJ ethanolamine ut 98.3 8E-07 1.7E-11 63.1 4.0 42 25-74 197-238 (239)
25 PRK15080 ethanolamine utilizat 98.2 2.1E-06 4.6E-11 61.8 4.2 45 24-76 223-267 (267)
26 PRK09472 ftsA cell division pr 97.6 6.1E-05 1.3E-09 57.4 3.6 68 4-77 305-387 (420)
27 CHL00094 dnaK heat shock prote 97.2 0.00036 7.9E-09 55.7 4.0 49 22-78 328-376 (621)
28 TIGR01174 ftsA cell division p 97.2 0.00019 4E-09 53.7 2.0 41 5-48 298-340 (371)
29 PRK00290 dnaK molecular chaper 97.1 0.00063 1.4E-08 54.3 4.1 63 5-77 311-373 (627)
30 TIGR02350 prok_dnaK chaperone 97.1 0.00064 1.4E-08 53.9 4.1 64 5-78 309-372 (595)
31 PTZ00400 DnaK-type molecular c 97.0 0.00092 2E-08 53.9 4.6 64 5-78 352-415 (663)
32 PRK01433 hscA chaperone protei 97.0 0.00062 1.3E-08 54.2 3.4 48 23-78 309-356 (595)
33 TIGR00241 CoA_E_activ CoA-subs 96.9 0.0014 3.1E-08 46.5 4.2 42 25-74 206-247 (248)
34 TIGR03286 methan_mark_15 putat 96.9 0.00059 1.3E-08 52.0 1.9 48 22-77 355-402 (404)
35 TIGR01991 HscA Fe-S protein as 96.8 0.0012 2.7E-08 52.5 3.6 64 5-78 297-360 (599)
36 PRK13411 molecular chaperone D 96.8 0.0013 2.7E-08 53.0 3.7 64 5-77 312-375 (653)
37 PLN03184 chloroplast Hsp70; Pr 96.7 0.0019 4E-08 52.2 4.1 63 5-77 350-412 (673)
38 PRK05183 hscA chaperone protei 96.7 0.0017 3.7E-08 51.9 3.3 47 23-77 329-375 (616)
39 TIGR03192 benz_CoA_bzdQ benzoy 96.6 0.0017 3.7E-08 47.7 2.9 49 21-77 238-287 (293)
40 PTZ00186 heat shock 70 kDa pre 96.6 0.0028 6E-08 51.2 4.0 48 22-77 353-400 (657)
41 COG1924 Activator of 2-hydroxy 96.6 0.0029 6.2E-08 47.9 3.7 44 26-77 346-389 (396)
42 TIGR02261 benz_CoA_red_D benzo 96.6 0.0022 4.8E-08 46.4 2.9 50 24-76 213-262 (262)
43 PRK13410 molecular chaperone D 96.5 0.0027 5.9E-08 51.3 3.4 50 21-78 327-376 (668)
44 PF00012 HSP70: Hsp70 protein; 96.4 0.0024 5.2E-08 50.2 2.7 64 4-77 312-375 (602)
45 PRK11678 putative chaperone; P 96.3 0.0038 8.2E-08 48.3 3.0 60 5-77 387-446 (450)
46 TIGR02259 benz_CoA_red_A benzo 96.2 0.0049 1.1E-07 47.2 3.4 52 22-76 381-432 (432)
47 PTZ00009 heat shock 70 kDa pro 96.2 0.0081 1.8E-07 48.4 4.4 64 5-77 317-380 (653)
48 PF11104 PilM_2: Type IV pilus 96.1 0.0049 1.1E-07 45.6 2.9 26 21-46 273-298 (340)
49 PRK13317 pantothenate kinase; 95.8 0.01 2.2E-07 43.2 3.2 71 2-77 201-273 (277)
50 TIGR01175 pilM type IV pilus a 95.7 0.018 3.9E-07 42.4 4.1 25 23-47 283-307 (348)
51 PF01869 BcrAD_BadFG: BadF/Bad 95.2 0.0053 1.1E-07 43.9 -0.1 65 4-76 207-271 (271)
52 COG0849 ftsA Cell division ATP 94.4 0.044 9.6E-07 42.2 3.2 66 5-78 305-380 (418)
53 PRK13917 plasmid segregation p 92.8 0.053 1.2E-06 40.5 1.3 44 23-77 292-335 (344)
54 COG4820 EutJ Ethanolamine util 91.6 0.23 5E-06 35.3 3.2 42 24-73 228-269 (277)
55 PF03702 UPF0075: Uncharacteri 89.1 0.32 6.9E-06 36.9 2.3 38 5-47 272-309 (364)
56 TIGR03739 PRTRC_D PRTRC system 88.9 0.57 1.2E-05 34.5 3.5 45 23-76 274-318 (320)
57 PRK05082 N-acetylmannosamine k 88.3 1.3 2.9E-05 31.8 5.1 51 25-76 236-286 (291)
58 PRK09585 anmK anhydro-N-acetyl 83.7 1.5 3.2E-05 33.3 3.4 23 24-46 288-310 (365)
59 PF02782 FGGY_C: FGGY family o 83.0 0.37 7.9E-06 32.4 -0.1 46 23-77 150-195 (198)
60 PF06406 StbA: StbA protein; 82.8 0.88 1.9E-05 33.5 1.9 42 23-71 273-314 (318)
61 PRK09698 D-allose kinase; Prov 81.2 5 0.00011 28.9 5.3 52 25-76 239-294 (302)
62 PRK13310 N-acetyl-D-glucosamin 77.6 6 0.00013 28.5 4.8 52 25-76 248-300 (303)
63 PRK09557 fructokinase; Reviewe 76.6 7.6 0.00016 28.0 5.1 51 25-75 247-298 (301)
64 TIGR00744 ROK_glcA_fam ROK fam 75.1 6.9 0.00015 28.3 4.6 52 25-76 254-308 (318)
65 COG0443 DnaK Molecular chapero 74.3 3.2 7E-05 33.3 2.9 49 21-77 308-356 (579)
66 COG4972 PilM Tfp pilus assembl 74.3 2.9 6.2E-05 31.6 2.4 25 23-47 288-312 (354)
67 PF03727 Hexokinase_2: Hexokin 73.9 4.4 9.6E-05 28.8 3.2 42 34-78 198-240 (243)
68 COG2441 Predicted butyrate kin 73.1 5.3 0.00012 29.8 3.5 71 4-77 258-331 (374)
69 TIGR00555 panK_eukar pantothen 70.1 4.9 0.00011 29.5 2.7 66 3-73 210-277 (279)
70 PRK15027 xylulokinase; Provisi 68.3 5.4 0.00012 30.9 2.8 47 23-77 387-433 (484)
71 TIGR01312 XylB D-xylulose kina 67.4 6.3 0.00014 30.3 3.0 47 23-78 391-437 (481)
72 PTZ00294 glycerol kinase-like 62.7 6.2 0.00013 30.8 2.2 46 23-77 407-452 (504)
73 TIGR01311 glycerol_kin glycero 62.4 8 0.00017 30.1 2.8 46 23-77 400-445 (493)
74 KOG0100|consensus 61.3 6.3 0.00014 31.0 1.9 32 15-46 355-386 (663)
75 PRK00976 hypothetical protein; 60.9 17 0.00036 27.4 4.1 43 25-77 266-310 (326)
76 PF09693 Phage_XkdX: Phage unc 59.5 5.7 0.00012 20.4 1.1 12 83-94 24-35 (40)
77 PRK00047 glpK glycerol kinase; 59.3 8.4 0.00018 30.0 2.4 46 23-77 404-449 (498)
78 PF14824 Sirohm_synth_M: Siroh 59.1 9 0.00019 18.6 1.6 21 27-49 9-29 (30)
79 PRK14878 UGMP family protein; 58.3 5.7 0.00012 29.5 1.3 35 23-62 242-276 (323)
80 KOG0101|consensus 58.2 8.6 0.00019 31.4 2.3 49 23-78 335-383 (620)
81 PLN02295 glycerol kinase 55.2 14 0.0003 29.0 3.0 46 23-77 413-458 (512)
82 PRK03011 butyrate kinase; Prov 54.8 16 0.00034 27.7 3.2 46 24-73 297-342 (358)
83 PRK04123 ribulokinase; Provisi 54.7 12 0.00025 29.6 2.5 46 23-77 439-485 (548)
84 TIGR01669 phage_XkdX phage unc 54.4 7.3 0.00016 20.6 0.9 11 84-94 30-40 (45)
85 PTZ00340 O-sialoglycoprotein e 53.6 6.8 0.00015 29.6 1.0 50 23-77 264-319 (345)
86 KOG2707|consensus 53.1 20 0.00043 27.6 3.4 69 8-78 293-362 (405)
87 TIGR03722 arch_KAE1 universal 53.0 7.8 0.00017 28.6 1.3 26 23-48 243-268 (322)
88 TIGR02628 fuculo_kin_coli L-fu 52.5 18 0.00039 28.0 3.2 47 23-78 394-440 (465)
89 PRK10331 L-fuculokinase; Provi 51.0 20 0.00043 27.7 3.2 47 23-78 390-436 (470)
90 KOG3445|consensus 49.9 19 0.0004 23.9 2.5 30 30-61 34-63 (145)
91 TIGR01234 L-ribulokinase L-rib 49.9 17 0.00037 28.7 2.8 46 23-77 436-482 (536)
92 TIGR03281 methan_mark_12 putat 49.4 34 0.00074 25.7 4.1 43 25-77 265-310 (326)
93 COG0533 QRI7 Metal-dependent p 48.3 23 0.00049 26.9 3.0 50 23-77 262-317 (342)
94 PF10784 Plasmid_stab_B: Plasm 48.2 5.2 0.00011 23.5 -0.3 26 5-30 16-41 (72)
95 TIGR01314 gntK_FGGY gluconate 47.8 18 0.0004 28.2 2.7 46 23-77 402-447 (505)
96 KOG1201|consensus 47.7 50 0.0011 24.6 4.7 33 16-51 30-63 (300)
97 PF07318 DUF1464: Protein of u 47.1 30 0.00066 26.2 3.6 48 26-77 264-314 (343)
98 PRK06947 glucose-1-dehydrogena 46.6 20 0.00044 24.5 2.5 23 23-48 2-24 (248)
99 TIGR03590 PseG pseudaminic aci 45.4 47 0.001 23.8 4.3 36 24-60 171-206 (279)
100 COG3967 DltE Short-chain dehyd 44.6 24 0.00053 25.3 2.6 22 24-48 5-27 (245)
101 PRK10939 autoinducer-2 (AI-2) 44.4 21 0.00045 28.0 2.5 46 23-77 410-455 (520)
102 PF14841 FliG_M: FliG middle d 44.2 27 0.00058 20.4 2.4 42 6-49 28-69 (79)
103 TIGR01315 5C_CHO_kinase FGGY-f 43.7 23 0.00051 28.0 2.7 46 23-77 444-489 (541)
104 TIGR00329 gcp_kae1 metallohydr 42.6 14 0.00031 27.1 1.2 34 24-62 260-293 (305)
105 PLN02669 xylulokinase 42.6 21 0.00046 28.5 2.3 46 24-78 447-492 (556)
106 PLN02596 hexokinase-like 42.4 29 0.00063 27.6 3.0 44 34-80 440-485 (490)
107 PTZ00107 hexokinase; Provision 41.1 29 0.00063 27.3 2.8 50 26-78 408-459 (464)
108 PF12401 DUF3662: Protein of u 40.7 1.6 3.5E-05 27.7 -3.5 61 37-98 28-98 (116)
109 KOG0683|consensus 39.9 59 0.0013 25.0 4.1 78 17-101 186-279 (380)
110 KOG2495|consensus 39.6 59 0.0013 25.8 4.2 47 6-52 197-251 (491)
111 COG4962 CpaF Flp pilus assembl 39.4 38 0.00083 25.8 3.1 27 24-53 174-200 (355)
112 PRK06924 short chain dehydroge 39.2 30 0.00065 23.7 2.4 23 24-49 2-24 (251)
113 PLN02914 hexokinase 38.5 32 0.0007 27.3 2.7 51 26-79 434-487 (490)
114 COG3824 Predicted Zn-dependent 38.3 42 0.0009 21.9 2.7 25 3-28 17-41 (136)
115 PRK14623 hypothetical protein; 38.2 19 0.00042 22.6 1.2 34 5-41 70-104 (106)
116 PRK00292 glk glucokinase; Prov 37.9 31 0.00067 25.1 2.4 51 25-76 257-313 (316)
117 PRK05650 short chain dehydroge 37.0 38 0.00083 23.6 2.7 21 25-48 2-22 (270)
118 PRK08099 bifunctional DNA-bind 37.0 18 0.00039 27.8 1.1 24 12-35 208-231 (399)
119 PRK07024 short chain dehydroge 35.4 40 0.00086 23.3 2.6 22 24-48 3-24 (257)
120 PRK05693 short chain dehydroge 35.4 38 0.00083 23.6 2.5 22 24-48 2-23 (274)
121 PLN02405 hexokinase 34.8 37 0.00081 27.0 2.5 51 26-79 436-489 (497)
122 COG1251 NirB NAD(P)H-nitrite r 34.7 86 0.0019 26.5 4.6 66 25-94 5-71 (793)
123 TIGR00143 hypF [NiFe] hydrogen 34.7 29 0.00063 28.8 2.0 25 24-48 660-684 (711)
124 TIGR02707 butyr_kinase butyrat 34.6 39 0.00085 25.5 2.5 34 24-61 295-328 (351)
125 PF00106 adh_short: short chai 34.4 46 0.00099 21.1 2.6 23 24-49 1-23 (167)
126 PRK06953 short chain dehydroge 34.0 43 0.00093 22.6 2.5 22 24-48 2-23 (222)
127 COG1028 FabG Dehydrogenases wi 33.8 41 0.0009 22.9 2.4 21 24-47 6-26 (251)
128 PRK06101 short chain dehydroge 33.7 41 0.00089 23.0 2.4 22 24-48 2-23 (240)
129 PRK08267 short chain dehydroge 33.4 43 0.00094 23.1 2.5 22 24-48 2-23 (260)
130 TIGR01181 dTDP_gluc_dehyt dTDP 33.1 50 0.0011 23.2 2.8 21 25-48 1-21 (317)
131 COG1070 XylB Sugar (pentulose 33.1 40 0.00087 26.4 2.5 43 24-74 403-445 (502)
132 PRK07825 short chain dehydroge 33.1 46 0.001 23.2 2.6 22 24-48 6-27 (273)
133 PRK05854 short chain dehydroge 33.1 43 0.00094 24.2 2.5 22 24-48 15-36 (313)
134 PRK07578 short chain dehydroge 32.9 49 0.0011 21.9 2.6 22 25-49 2-23 (199)
135 PRK14626 hypothetical protein; 32.9 26 0.00057 22.1 1.2 30 7-39 78-107 (110)
136 cd08584 PI-PLCc_GDPD_SF_unchar 32.8 83 0.0018 21.9 3.7 17 78-94 129-145 (192)
137 PF14781 BBS2_N: Ciliary BBSom 32.1 17 0.00037 23.9 0.2 17 23-39 107-123 (136)
138 KOG2960|consensus 31.9 27 0.00058 25.4 1.2 54 20-78 73-127 (328)
139 cd07766 DHQ_Fe-ADH Dehydroquin 31.6 51 0.0011 24.1 2.7 39 11-49 11-49 (332)
140 PLN02362 hexokinase 31.4 59 0.0013 26.0 3.1 50 26-78 445-497 (509)
141 PF11333 DUF3135: Protein of u 30.8 47 0.001 19.9 2.0 20 4-23 25-44 (83)
142 PF09337 zf-H2C2: His(2)-Cys(2 30.7 55 0.0012 16.6 2.0 16 1-16 22-37 (39)
143 PRK09291 short chain dehydroge 30.7 49 0.0011 22.6 2.4 22 24-48 3-24 (257)
144 PF14716 HHH_8: Helix-hairpin- 30.6 22 0.00048 20.0 0.5 36 7-49 31-66 (68)
145 PRK07023 short chain dehydroge 30.5 53 0.0012 22.4 2.5 22 24-48 2-23 (243)
146 PRK06179 short chain dehydroge 30.1 56 0.0012 22.7 2.6 22 25-49 6-27 (270)
147 cd01403 Cyt_c_Oxidase_VIIb Cyt 29.7 31 0.00068 18.7 1.0 15 21-35 7-21 (51)
148 PRK08251 short chain dehydroge 29.4 60 0.0013 22.1 2.6 22 24-48 3-24 (248)
149 PRK12937 short chain dehydroge 28.9 62 0.0013 21.9 2.6 22 24-48 6-27 (245)
150 PF08030 NAD_binding_6: Ferric 28.8 30 0.00065 22.1 1.0 49 23-71 1-53 (156)
151 PRK14625 hypothetical protein; 28.6 27 0.00059 22.0 0.7 30 7-39 75-105 (109)
152 PRK06482 short chain dehydroge 28.4 62 0.0013 22.5 2.6 22 24-48 3-24 (276)
153 PRK07102 short chain dehydroge 28.4 58 0.0013 22.2 2.4 22 24-48 2-23 (243)
154 COG3797 Uncharacterized protei 28.4 71 0.0015 22.0 2.7 34 24-58 43-76 (178)
155 PRK12742 oxidoreductase; Provi 28.3 66 0.0014 21.6 2.7 22 24-48 7-28 (237)
156 PHA01159 hypothetical protein 28.0 68 0.0015 20.5 2.4 24 1-24 66-89 (114)
157 KOG0103|consensus 27.8 59 0.0013 27.1 2.6 42 5-46 307-357 (727)
158 PRK06194 hypothetical protein; 27.7 61 0.0013 22.7 2.5 22 24-48 7-28 (287)
159 PRK12825 fabG 3-ketoacyl-(acyl 27.6 65 0.0014 21.6 2.6 22 24-48 7-28 (249)
160 PRK09009 C factor cell-cell si 27.6 69 0.0015 21.6 2.7 22 25-49 2-23 (235)
161 KOG1794|consensus 27.6 1.3E+02 0.0027 22.8 4.1 71 3-77 244-315 (336)
162 COG1940 NagC Transcriptional r 27.5 77 0.0017 22.8 3.0 52 26-77 251-306 (314)
163 COG2065 PyrR Pyrimidine operon 27.4 86 0.0019 21.5 3.0 46 5-50 10-57 (179)
164 PRK08264 short chain dehydroge 27.3 69 0.0015 21.6 2.6 23 24-49 7-29 (238)
165 PRK14599 trmD tRNA (guanine-N( 27.3 64 0.0014 23.0 2.4 26 18-46 95-124 (222)
166 KOG1369|consensus 27.3 67 0.0014 25.5 2.8 52 26-80 415-468 (474)
167 PF04155 Ground-like: Ground-l 27.2 72 0.0016 18.3 2.3 52 14-71 7-59 (76)
168 PRK07904 short chain dehydroge 27.2 67 0.0014 22.3 2.6 22 25-49 10-31 (253)
169 PRK07806 short chain dehydroge 26.9 74 0.0016 21.6 2.8 22 24-48 7-28 (248)
170 PF05295 Luciferase_N: Lucifer 26.8 18 0.0004 21.5 -0.3 19 75-94 29-47 (82)
171 PRK10217 dTDP-glucose 4,6-dehy 26.7 61 0.0013 23.6 2.4 22 24-48 2-23 (355)
172 PRK12827 short chain dehydroge 26.7 72 0.0016 21.5 2.7 21 25-48 8-28 (249)
173 PRK05876 short chain dehydroge 26.7 68 0.0015 22.6 2.6 21 25-48 8-28 (275)
174 KOG4058|consensus 26.6 28 0.0006 23.8 0.5 26 23-48 139-164 (199)
175 PRK06182 short chain dehydroge 26.6 72 0.0016 22.2 2.7 22 24-48 4-25 (273)
176 PRK08628 short chain dehydroge 26.6 72 0.0016 21.9 2.7 21 25-48 9-29 (258)
177 PF08260 Kinin: Insect kinin p 26.5 30 0.00064 11.6 0.3 6 64-69 2-7 (8)
178 COG3426 Butyrate kinase [Energ 26.0 56 0.0012 24.6 2.0 28 24-51 298-325 (358)
179 PRK07577 short chain dehydroge 26.0 78 0.0017 21.2 2.7 22 24-48 4-25 (234)
180 PRK00153 hypothetical protein; 25.8 39 0.00084 20.8 1.0 10 28-38 94-103 (104)
181 COG5559 Uncharacterized conser 25.7 9.7 0.00021 21.5 -1.5 19 58-76 31-49 (65)
182 PRK13373 putative dioxygenase; 25.7 71 0.0015 24.3 2.6 32 3-38 165-196 (344)
183 PRK05653 fabG 3-ketoacyl-(acyl 25.7 76 0.0016 21.3 2.6 22 24-48 6-27 (246)
184 TIGR01832 kduD 2-deoxy-D-gluco 25.5 77 0.0017 21.5 2.6 22 24-48 6-27 (248)
185 COG0336 TrmD tRNA-(guanine-N1) 25.5 76 0.0017 22.9 2.6 25 19-46 97-124 (240)
186 PRK06719 precorrin-2 dehydroge 25.4 54 0.0012 21.6 1.7 23 29-53 125-147 (157)
187 PF01106 NifU: NifU-like domai 25.4 1.4E+02 0.003 16.9 4.1 30 26-55 31-64 (68)
188 KOG0258|consensus 25.4 1.4E+02 0.0029 23.6 4.0 68 2-76 117-187 (475)
189 PRK06180 short chain dehydroge 25.4 76 0.0016 22.2 2.6 22 24-48 5-26 (277)
190 PF10087 DUF2325: Uncharacteri 25.3 64 0.0014 19.2 2.0 19 25-43 1-20 (97)
191 PRK12935 acetoacetyl-CoA reduc 25.2 77 0.0017 21.5 2.6 22 24-48 7-28 (247)
192 PF12242 Eno-Rase_NADH_b: NAD( 25.1 27 0.00058 20.8 0.2 22 24-46 40-61 (78)
193 PRK05866 short chain dehydroge 25.0 76 0.0016 22.7 2.6 21 25-48 42-62 (293)
194 KOG0421|consensus 24.9 68 0.0015 21.5 2.1 33 38-71 30-63 (175)
195 PRK08177 short chain dehydroge 24.9 75 0.0016 21.4 2.5 22 24-48 2-23 (225)
196 PRK05904 coproporphyrinogen II 24.7 1.2E+02 0.0026 22.8 3.7 41 23-63 57-99 (353)
197 PRK09605 bifunctional UGMP fam 24.5 61 0.0013 25.5 2.1 26 23-48 246-271 (535)
198 PF10047 DUF2281: Protein of u 24.5 61 0.0013 18.3 1.6 48 4-73 2-49 (66)
199 PRK12936 3-ketoacyl-(acyl-carr 24.4 85 0.0018 21.1 2.7 22 24-48 7-28 (245)
200 TIGR00103 DNA_YbaB_EbfC DNA-bi 24.1 37 0.0008 21.0 0.7 12 27-38 91-102 (102)
201 PRK12367 short chain dehydroge 24.1 82 0.0018 22.0 2.6 22 24-48 15-36 (245)
202 PRK06483 dihydromonapterin red 24.1 81 0.0018 21.3 2.5 22 24-48 3-24 (236)
203 PRK06718 precorrin-2 dehydroge 23.5 71 0.0015 22.0 2.1 23 29-53 125-147 (202)
204 PRK07067 sorbitol dehydrogenas 23.5 89 0.0019 21.4 2.7 21 25-48 8-28 (257)
205 PRK00026 trmD tRNA (guanine-N( 23.5 66 0.0014 23.3 2.0 18 26-46 109-126 (244)
206 PRK08446 coproporphyrinogen II 23.4 1.6E+02 0.0035 21.9 4.1 40 23-62 52-93 (350)
207 PRK07832 short chain dehydroge 23.4 89 0.0019 21.8 2.7 21 25-48 2-22 (272)
208 PRK12939 short chain dehydroge 23.3 91 0.002 21.1 2.7 22 24-48 8-29 (250)
209 PRK07453 protochlorophyllide o 23.2 88 0.0019 22.5 2.7 22 24-48 7-28 (322)
210 PRK12429 3-hydroxybutyrate deh 23.2 91 0.002 21.2 2.6 22 24-48 5-26 (258)
211 PRK08898 coproporphyrinogen II 23.1 1.5E+02 0.0033 22.5 4.0 40 23-62 74-117 (394)
212 PRK05993 short chain dehydroge 23.1 89 0.0019 21.9 2.6 22 24-48 5-26 (277)
213 PRK08219 short chain dehydroge 22.9 92 0.002 20.7 2.6 23 24-49 4-26 (227)
214 PRK07523 gluconate 5-dehydroge 22.8 92 0.002 21.3 2.6 22 24-48 11-32 (255)
215 PRK09730 putative NAD(P)-bindi 22.7 88 0.0019 21.1 2.5 21 24-47 2-22 (247)
216 PRK07478 short chain dehydroge 22.6 97 0.0021 21.2 2.7 22 24-48 7-28 (254)
217 PRK09072 short chain dehydroge 22.6 95 0.0021 21.4 2.7 21 25-48 7-27 (263)
218 PRK05872 short chain dehydroge 22.5 93 0.002 22.2 2.7 22 24-48 10-31 (296)
219 PRK05565 fabG 3-ketoacyl-(acyl 22.4 94 0.002 20.9 2.6 22 24-48 6-27 (247)
220 PRK07035 short chain dehydroge 22.3 96 0.0021 21.1 2.6 21 25-48 10-30 (252)
221 PF00101 RuBisCO_small: Ribulo 22.3 93 0.002 19.2 2.3 46 32-77 5-55 (99)
222 PRK05867 short chain dehydroge 22.3 96 0.0021 21.2 2.6 22 24-48 10-31 (253)
223 PRK08416 7-alpha-hydroxysteroi 22.2 95 0.0021 21.4 2.6 22 24-48 9-30 (260)
224 PRK07890 short chain dehydroge 22.2 1E+02 0.0022 21.0 2.7 21 25-48 7-27 (258)
225 PF13964 Kelch_6: Kelch motif 22.2 52 0.0011 16.8 1.0 11 25-35 13-23 (50)
226 COG3560 FMR2 Predicted oxidore 22.1 2E+02 0.0043 20.1 4.0 49 3-53 30-78 (200)
227 PF11051 Mannosyl_trans3: Mann 22.1 1.5E+02 0.0032 21.3 3.6 35 25-61 3-37 (271)
228 PRK09604 UGMP family protein; 22.1 61 0.0013 24.1 1.6 49 24-77 256-310 (332)
229 PRK08265 short chain dehydroge 22.1 98 0.0021 21.4 2.7 22 24-48 7-28 (261)
230 PRK07856 short chain dehydroge 22.1 94 0.002 21.3 2.5 22 24-48 7-28 (252)
231 KOG0104|consensus 22.0 93 0.002 26.5 2.8 25 23-47 365-389 (902)
232 PRK08340 glucose-1-dehydrogena 22.0 98 0.0021 21.3 2.6 21 25-48 2-22 (259)
233 PRK05786 fabG 3-ketoacyl-(acyl 22.0 99 0.0022 20.8 2.6 22 24-48 6-27 (238)
234 KOG1210|consensus 22.0 1.6E+02 0.0034 22.3 3.8 24 24-50 34-57 (331)
235 TIGR03723 bact_gcp putative gl 21.9 66 0.0014 23.8 1.8 25 24-48 261-285 (314)
236 TIGR02627 rhamnulo_kin rhamnul 21.9 64 0.0014 24.8 1.8 45 24-78 389-433 (454)
237 PRK12481 2-deoxy-D-gluconate 3 21.8 97 0.0021 21.4 2.6 21 25-48 10-30 (251)
238 COG4835 Uncharacterized protei 21.8 24 0.00051 22.5 -0.5 27 22-48 60-86 (124)
239 PRK06057 short chain dehydroge 21.8 1E+02 0.0022 21.2 2.6 22 24-48 8-29 (255)
240 PRK07775 short chain dehydroge 21.6 1E+02 0.0022 21.6 2.7 22 24-48 11-32 (274)
241 PRK08017 oxidoreductase; Provi 21.4 94 0.002 21.1 2.4 22 24-48 3-24 (256)
242 cd07369 PydA_Rs_like PydA is a 21.3 1.3E+02 0.0028 22.7 3.2 30 5-38 167-196 (329)
243 PRK08945 putative oxoacyl-(acy 21.1 1.1E+02 0.0023 20.9 2.6 21 25-48 14-34 (247)
244 PRK12823 benD 1,6-dihydroxycyc 21.1 1.1E+02 0.0023 21.0 2.7 22 24-48 9-30 (260)
245 PRK06077 fabG 3-ketoacyl-(acyl 21.1 1.1E+02 0.0023 20.7 2.7 22 24-48 7-28 (252)
246 PRK05557 fabG 3-ketoacyl-(acyl 21.1 1.1E+02 0.0023 20.5 2.6 21 25-48 7-27 (248)
247 PRK07063 short chain dehydroge 21.0 1.1E+02 0.0023 21.1 2.7 21 25-48 9-29 (260)
248 PF08281 Sigma70_r4_2: Sigma-7 21.0 95 0.0021 16.0 1.9 18 5-22 2-19 (54)
249 PRK06197 short chain dehydroge 21.0 1E+02 0.0022 22.0 2.6 22 24-48 17-38 (306)
250 PRK08309 short chain dehydroge 21.0 1E+02 0.0022 20.7 2.4 20 25-48 2-21 (177)
251 PRK06196 oxidoreductase; Provi 20.9 1.1E+02 0.0023 22.1 2.7 22 24-48 27-48 (315)
252 TIGR03206 benzo_BadH 2-hydroxy 20.9 1.1E+02 0.0024 20.7 2.7 21 25-48 5-25 (250)
253 TIGR01746 Thioester-redct thio 20.9 98 0.0021 22.1 2.5 22 25-49 1-22 (367)
254 PRK08703 short chain dehydroge 20.8 1.1E+02 0.0024 20.7 2.7 22 24-48 7-28 (239)
255 cd05015 SIS_PGI_1 Phosphogluco 20.6 1.3E+02 0.0028 19.7 2.8 12 22-33 19-31 (158)
256 PRK06123 short chain dehydroge 20.6 1.1E+02 0.0024 20.7 2.6 21 25-48 4-24 (248)
257 PLN02214 cinnamoyl-CoA reducta 20.5 88 0.0019 22.9 2.2 23 23-48 10-32 (342)
258 PF03358 FMN_red: NADPH-depend 20.5 1.2E+02 0.0027 19.1 2.7 39 25-63 2-41 (152)
259 TIGR01831 fabG_rel 3-oxoacyl-( 20.4 1.1E+02 0.0023 20.7 2.5 20 26-48 1-20 (239)
260 PRK06172 short chain dehydroge 20.3 1.1E+02 0.0024 20.8 2.6 22 24-48 8-29 (253)
261 PTZ00285 glucosamine-6-phospha 20.3 1.1E+02 0.0025 21.6 2.7 22 24-46 35-56 (253)
262 PRK10084 dTDP-glucose 4,6 dehy 20.2 1E+02 0.0023 22.3 2.6 21 25-48 2-22 (352)
263 PRK08085 gluconate 5-dehydroge 20.2 1.1E+02 0.0024 20.9 2.6 21 25-48 11-31 (254)
264 PRK07074 short chain dehydroge 20.2 1.1E+02 0.0024 20.9 2.6 21 25-48 4-24 (257)
265 PRK06200 2,3-dihydroxy-2,3-dih 20.1 1.1E+02 0.0024 21.0 2.6 22 24-48 7-28 (263)
266 TIGR00088 trmD tRNA (guanine-N 20.0 72 0.0016 22.9 1.6 18 26-46 106-123 (233)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.7e-37 Score=229.69 Aligned_cols=104 Identities=24% Similarity=0.513 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||+++|.+||++||+|+|++|++||+|+||+|+||||.+||++||+.++|...+++|..++++.+++|+|||++|++++
T Consensus 272 ~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~ 351 (375)
T PTZ00452 272 AGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLST 351 (375)
T ss_pred CChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccc
Confidence 48999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|+++||||+||+|+|+++++|||+
T Consensus 352 f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 352 QQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred hhhhEeEHHHHhccCcceeeeecC
Confidence 999999999999999999999985
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=226.40 Aligned_cols=104 Identities=27% Similarity=0.519 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||+++|.+||++||.|.|++|++||+|+||+|++|||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus 277 ~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~ 356 (380)
T PTZ00466 277 LGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLAT 356 (380)
T ss_pred CCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccc
Confidence 48999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|++.||||+||+|+|+++++|||+
T Consensus 357 f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 357 FKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred hhhhEeEHHHHhhhCcHhheeecC
Confidence 999999999999999999999985
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=2.6e-36 Score=225.09 Aligned_cols=104 Identities=28% Similarity=0.608 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||+++|.+||.+||.|+|+.|++||+|+||+|+||||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus 273 ~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~ 352 (376)
T PTZ00281 273 AGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLST 352 (376)
T ss_pred CCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCccc
Confidence 48999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|++.||||+||+|+|+++++|||+
T Consensus 353 f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 353 FQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred HhhceeeHHHHhhhCchheeeecC
Confidence 999999999999999999999985
No 4
>KOG0676|consensus
Probab=100.00 E-value=4.1e-36 Score=222.69 Aligned_cols=104 Identities=34% Similarity=0.646 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||++++.+||.+||.|+|++||+||+|+||+|++|||.+||++||+.+.|...+++|.+++++.+++|+||||+|++++
T Consensus 269 ~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslst 348 (372)
T KOG0676|consen 269 PGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLST 348 (372)
T ss_pred CchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecch
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|+++||||+||+|.|+.++||||+
T Consensus 349 fq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 349 FQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred HhhccccHHHHhhhCCceeeeccC
Confidence 999999999999999999999996
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.8e-35 Score=220.55 Aligned_cols=104 Identities=33% Similarity=0.627 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||+++|.+||.+||.|+|+.|++||+|+||+|++|||.+||++||+.++|...+++|..+++|.+++|+|||++|++++
T Consensus 275 ~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~ 354 (378)
T PTZ00004 275 PGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPT 354 (378)
T ss_pred CChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccc
Confidence 48999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|++.||||+||+|+|+++++|||+
T Consensus 355 f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 355 FQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hhhhEeEHHHHhhhCcceEEeecC
Confidence 999999999999999999999985
No 6
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=4.7e-35 Score=217.83 Aligned_cols=104 Identities=36% Similarity=0.672 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC-CCcccceehhhhhcccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS-NPMTYAWEGGKLMSLDP 79 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~-~~~~~aW~G~s~~a~l~ 79 (105)
+||+++|.+||++||.|.|+.|++||+|+||+|++|||.+||++||+.+.|...+++|..++ +|.+++|+|||++|+++
T Consensus 289 ~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 289 MGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp SCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred chhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 38999999999999999999999999999999999999999999999999998899999998 99999999999999999
Q ss_pred cccccceeHHHHHhhChhHHhhhcC
Q psy8375 80 EFYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 80 ~~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
+|+++||||+||+|+|+++++|||+
T Consensus 369 ~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 369 SFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred cccceeeeHHHHhCcCcceeeecCC
Confidence 9999999999999999999999995
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=3.8e-34 Score=215.47 Aligned_cols=101 Identities=38% Similarity=0.682 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhC----------------CCCceeEEeCCCCCc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLA----------------PDEFDVNVVLPSNPM 65 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~----------------p~~~~v~v~~~~~~~ 65 (105)
||+++|.++|++||+|+|++|++||+|+||+|+||||.+||++||+.++ |...+++|..++++.
T Consensus 292 gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 371 (414)
T PTZ00280 292 PLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQR 371 (414)
T ss_pred CHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccc
Confidence 8999999999999999999999999999999999999999999999986 345678899888889
Q ss_pred ccceehhhhhcccccccccceeHHHHHhhChhHHhhh
Q psy8375 66 TYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102 (105)
Q Consensus 66 ~~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~k 102 (105)
+++|+|||++|++++|+++||||+||+|+|+++++++
T Consensus 372 ~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 372 YAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred eeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 9999999999999999999999999999999999886
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.7e-33 Score=208.66 Aligned_cols=103 Identities=31% Similarity=0.637 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcccccc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEF 81 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~~ 81 (105)
||+++|.++|.+||+|+|++|++||+||||+|++|||.+||++||+.+.|...+++|..+++|.+++|.|||++|++++|
T Consensus 271 ~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f 350 (373)
T smart00268 271 GIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTF 350 (373)
T ss_pred CHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccch
Confidence 89999999999999999999999999999999999999999999999999888899998899999999999999999999
Q ss_pred cccceeHHHHHhhChhHHhhhcC
Q psy8375 82 YSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 82 ~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
++.||||+||+|+|+++++|||+
T Consensus 351 ~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 351 EDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred hhhEEEHHHHhhhCcceEEeecC
Confidence 99999999999999999999995
No 9
>KOG0679|consensus
Probab=99.97 E-value=9e-33 Score=203.35 Aligned_cols=103 Identities=23% Similarity=0.509 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC---CCcccceehhhhhcc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS---NPMTYAWEGGKLMSL 77 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~---~~~~~aW~G~s~~a~ 77 (105)
.|+++++..||..||.|+|..|+.|||+|||+|+|+||.+||++||...+|.. ++++++.. ++++++|+||||+|+
T Consensus 320 lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 320 LGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred cCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhc
Confidence 48999999999999999999999999999999999999999999999999987 99998765 789999999999999
Q ss_pred cccccccceeHHHHHhhCh-hHHhhhcC
Q psy8375 78 DPEFYSFVVTKEEYEEEGL-ALCYERFD 104 (105)
Q Consensus 78 l~~~~~~~itk~ey~e~G~-~~~~~k~~ 104 (105)
|.+|+++||+|+||+|.|. ..+.+||+
T Consensus 399 LgtFqq~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 399 LGTFQQLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred cccHHHHhhhHHHHHHhhhHHHHhhcCC
Confidence 9999999999999999999 78889996
No 10
>KOG0680|consensus
Probab=99.97 E-value=5.1e-32 Score=196.31 Aligned_cols=105 Identities=37% Similarity=0.753 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||+|+|.+||+.||.++|+.|+.||+++||+++||||.+||.+||+.++|.++.++|..|.||..-+|.||+-++++++
T Consensus 296 ~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~ 375 (400)
T KOG0680|consen 296 PGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDS 375 (400)
T ss_pred CCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcCC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFDI 105 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~~ 105 (105)
|...||||+||+|+|++++.+|+++
T Consensus 376 ~~~~~itR~dy~E~G~~~~~~~~~~ 400 (400)
T KOG0680|consen 376 FEKAVITREDYEEHGPSWCTKKRFI 400 (400)
T ss_pred hhcceecHhhHhhcCchhhhhhccC
Confidence 9999999999999999999999985
No 11
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.97 E-value=2.2e-31 Score=202.02 Aligned_cols=104 Identities=33% Similarity=0.608 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
.||++++.++|+.||.|.|+.|++||+||||+|++|||.+||++||+.+.|..+.+.|..+++|.+.+|+|||++|++++
T Consensus 341 ~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~ 420 (444)
T COG5277 341 AGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLET 420 (444)
T ss_pred cchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhcC
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
|+.+||||+||+|+|++++++++.
T Consensus 421 ~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 421 FQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999874
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.96 E-value=2.7e-30 Score=191.63 Aligned_cols=102 Identities=33% Similarity=0.658 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCC--CceeEEeCCCCCcccceehhhhhccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD--EFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~--~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.||+++|.++|.+||+|.|+.+++||+||||+|++|||.+||++||..+.|. ...+++..+++|.+++|+|||++|++
T Consensus 268 ~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 268 VGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred CCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 3899999999999999999999999999999999999999999999999997 56678888889999999999999999
Q ss_pred ccccccceeHHHHHhhChhHHhhh
Q psy8375 79 PEFYSFVVTKEEYEEEGLALCYER 102 (105)
Q Consensus 79 ~~~~~~~itk~ey~e~G~~~~~~k 102 (105)
++|+++||||+||+|+|+++++||
T Consensus 348 ~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 348 STFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred hhhhheEeeHHHHhhhCchhEecC
Confidence 999999999999999999999886
No 13
>KOG0681|consensus
Probab=99.89 E-value=1.3e-23 Score=160.32 Aligned_cols=103 Identities=29% Similarity=0.629 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+||.|++..++.+.|.|.+..|.+||+||||+|++||+++||.+||....|...+|+|+.+.||..+||.||+.+|...+
T Consensus 537 aGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~ 616 (645)
T KOG0681|consen 537 AGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPT 616 (645)
T ss_pred hhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeHHHHHhhChhHHhhhc
Q psy8375 81 FYSFVVTKEEYEEEGLALCYERF 103 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~k~ 103 (105)
|...|+||+||+|.|+.++++.+
T Consensus 617 f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 617 FTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred cchhhhhHHhhhhhhHHHHHHHh
Confidence 99999999999999999998764
No 14
>KOG0677|consensus
Probab=99.88 E-value=6.6e-23 Score=146.33 Aligned_cols=102 Identities=25% Similarity=0.517 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCC-----------CCceeEEeCCCCCcccce
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAP-----------DEFDVNVVLPSNPMTYAW 69 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p-----------~~~~v~v~~~~~~~~~aW 69 (105)
+|++|+++++|+..|.|.|.++|++|+|+||+++.||+..||++||+++.- ..+++++-.||.+.+.++
T Consensus 273 ~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVf 352 (389)
T KOG0677|consen 273 PGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVF 352 (389)
T ss_pred CcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEE
Confidence 589999999999999999999999999999999999999999999998621 135688888998999999
Q ss_pred ehhhhhccc-ccccccceeHHHHHhhChhHHhhh
Q psy8375 70 EGGKLMSLD-PEFYSFVVTKEEYEEEGLALCYER 102 (105)
Q Consensus 70 ~G~s~~a~l-~~~~~~~itk~ey~e~G~~~~~~k 102 (105)
+||+++|.+ ..-+++|+||+||+|.|++.+.+.
T Consensus 353 lGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 353 LGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred EchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 999999986 456789999999999999988764
No 15
>KOG0678|consensus
Probab=99.77 E-value=1.6e-19 Score=131.79 Aligned_cols=100 Identities=35% Similarity=0.604 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCC--------------CCceeEEeCCCCCccc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAP--------------DEFDVNVVLPSNPMTY 67 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p--------------~~~~v~v~~~~~~~~~ 67 (105)
.|+++|..+|++||.|.|+.||+||+++||.+++++|..|+++++..+.. ....|+|+...-.+++
T Consensus 294 ~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~a 373 (415)
T KOG0678|consen 294 PLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTA 373 (415)
T ss_pred chHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcc
Confidence 47899999999999999999999999999999999999999999987532 2234666666667899
Q ss_pred ceehhhhhcccccccccceeHHHHHhhChhHHhh
Q psy8375 68 AWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYE 101 (105)
Q Consensus 68 aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~~~~ 101 (105)
+|.||+++++.+.|-..+-||++|+|+||++++.
T Consensus 374 vwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 374 VWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred eeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 9999999999999999999999999999999875
No 16
>KOG0797|consensus
Probab=99.59 E-value=7.9e-16 Score=117.47 Aligned_cols=103 Identities=18% Similarity=0.397 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHcC-CcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCC----ceeEEeCCC---CCcccceehhh
Q psy8375 2 GVSECIVDVIRSC-PMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE----FDVNVVLPS---NPMTYAWEGGK 73 (105)
Q Consensus 2 gi~~~I~~si~~~-~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~----~~v~v~~~~---~~~~~aW~G~s 73 (105)
++...|..||..+ ..|.++.||+.|.++||..++|||.+-|+..+....|.. ..|.|+.++ ||++-+|+||+
T Consensus 505 ~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaa 584 (618)
T KOG0797|consen 505 ALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAA 584 (618)
T ss_pred ccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchh
Confidence 3456688888776 568899999999999999999999999999998877752 257888776 79999999999
Q ss_pred hhcccccccccceeHHHHHhhChhHHhhhcC
Q psy8375 74 LMSLDPEFYSFVVTKEEYEEEGLALCYERFD 104 (105)
Q Consensus 74 ~~a~l~~~~~~~itk~ey~e~G~~~~~~k~~ 104 (105)
+++.++.-++.||++.||..+|.++++.||+
T Consensus 585 Ila~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 585 ILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred hhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 9999999999999999999999999999975
No 17
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.17 E-value=2.4e-11 Score=89.82 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.|.+.|.++++++|||+..++++| |+||||+|+++||+++|++++ .+.|..+++|.+++-.|+..+..
T Consensus 252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 367889999999999999999987 999999999999999999999 67888889999999999876543
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.12 E-value=3.9e-11 Score=88.24 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
++.+.|.+++++++++.+.++++ ||+||||+|++|||.+||++++ .+.|....+|..++-.|+++++.
T Consensus 258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~--------~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET--------GLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH--------CCCceecCChHHHHHHHHHHHHh
Confidence 47788999999999999999997 7999999999999999999999 34556667888999999998753
No 19
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.09 E-value=6.8e-11 Score=86.70 Aligned_cols=68 Identities=21% Similarity=0.359 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
++.+.|.++|++|+++.+.+++.| |+|+||+|++|||.+||++++. +++..+.+|..++-.|+++++.
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~--------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG--------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 478899999999999999999998 9999999999999999999983 3455556788888899998774
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.06 E-value=9.3e-11 Score=86.60 Aligned_cols=65 Identities=23% Similarity=0.453 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhh
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLM 75 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~ 75 (105)
|.+.|.++|++||++.+.++++ +|+||||+|++|||.+||++++. +.|....+|..++-.|+...
T Consensus 258 i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~--------~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 258 ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV--------VPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC--------CCceeCCCHHHHHHHHHHHH
Confidence 6788999999999999999998 69999999999999999999993 34445568888999998764
No 21
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.06 E-value=9e-11 Score=86.18 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+|.+.|.++|++++++.+.+++++ |+|+||+|++|||.+||++++. ++|....+|..++-.|+++++.
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~--------~~v~~~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG--------LPVHVAEDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC--------CCcEecCCHHHHHHHHHHHHHh
Confidence 478899999999999999999985 9999999999999999999983 3445556788889999988764
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.88 E-value=1.5e-09 Score=80.04 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCcchHHHhhc-CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYE-NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~-nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.+.|.+++.+++++.+.++++ +|+||||+|++||+.++|++++. +.|....+|..++-.|+++.+.
T Consensus 255 i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~--------~~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 255 IVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK--------VPVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 6778899999999999999998 79999999999999999999993 3445556789999999998654
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.45 E-value=8.5e-08 Score=70.63 Aligned_cols=66 Identities=27% Similarity=0.457 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhh
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLM 75 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~ 75 (105)
+|.+.|...+.+||||+-.+.+++ |+++||+|++.||++.|.+|. .+.|..+++|..++-+|+...
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et--------~~pv~ia~~pL~~Va~G~G~~ 328 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET--------GVPVIIADDPLTCVAKGTGKA 328 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--------CCeEEECCChHHHHHhccchh
Confidence 578899999999999999999999 999999999999999999988 778888889998888887653
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.30 E-value=8e-07 Score=63.09 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=35.8
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL 74 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~ 74 (105)
.|+||||+|++||+.++|++++ .+.|..+.+|.+++-.|+++
T Consensus 197 ~v~LtGG~a~ipgl~e~l~~~l--------g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 197 DLYLVGGACSFSGFADVFEKQL--------GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEEEECchhcchhHHHHHHHHh--------CCCcccCCCCCeehhheeec
Confidence 6999999999999999999998 44455677899998888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.18 E-value=2.1e-06 Score=61.80 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=37.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
+.|+||||+|++||+.+.+++.+ .+.|..+++|.+++-.|+++++
T Consensus 223 ~~IvLtGG~s~lpgl~e~l~~~l--------g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 223 EDIYLVGGTCCLPGFEEVFEKQT--------GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CEEEEECCcccchhHHHHHHHHh--------CCCcccCCCchHHHHHHHHhhC
Confidence 57999999999999999999998 3344557789999999987653
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.61 E-value=6.1e-05 Score=57.41 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcchHHH-----hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC----------CCCcccc
Q psy8375 4 SECIVDVIRSCPMEAQPH-----LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP----------SNPMTYA 68 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~-----l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~----------~~~~~~a 68 (105)
.+.|.+++..++.+++.. +-..|+||||+|++||+.+.+++.+.. ++++..| .+|.|++
T Consensus 305 ~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~at 378 (420)
T PRK09472 305 LNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYST 378 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHH
Confidence 345666666666655533 344599999999999999999988853 2333222 3688888
Q ss_pred eehhhhhcc
Q psy8375 69 WEGGKLMSL 77 (105)
Q Consensus 69 W~G~s~~a~ 77 (105)
-.|...++.
T Consensus 379 a~Gl~~~~~ 387 (420)
T PRK09472 379 AVGLLHYGK 387 (420)
T ss_pred HHHHHHHhh
Confidence 889887765
No 27
>CHL00094 dnaK heat shock protein 70
Probab=97.24 E-value=0.00036 Score=55.66 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=38.0
Q ss_pred hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
-...|+|+||+|.+|++.+.+.+.+.. .+....+|..++..||++.|..
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 347899999999999999999987732 2233446778889999988763
No 28
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.21 E-value=0.00019 Score=53.69 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred HHHH-HHHHcCCcchHHHhhcC-eEEecCCCCCccHHHHHHHHHhh
Q psy8375 5 ECIV-DVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 5 ~~I~-~si~~~~~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|. +.+.+.+.+ .. ..+ |+||||+|++||+.+++.+.+..
T Consensus 298 ~~i~~~~L~~~~~~--~~-i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 298 EIVKQKELRKSGFK--EE-LNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHhcCCc--cc-CCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 4444 555555443 23 355 99999999999999999998843
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=97.10 E-value=0.00063 Score=54.32 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.|.+++...... ..-...|+|+||+|.+|.+.+++.+.+.. .+....+|..++..||++.|.
T Consensus 311 ~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeava~GAa~~aa 373 (627)
T PRK00290 311 EPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEVVAIGAAIQGG 373 (627)
T ss_pred HHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHHHHHhHHHHHH
Confidence 3445555544332 22347899999999999999999887621 223345677888999998765
No 30
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=97.10 E-value=0.00064 Score=53.87 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
+.|.+++...... ..-...|+|+||+|.+|.+.+.+.+.+. ..+....+|..++..||++.|..
T Consensus 309 ~~i~~~l~~a~~~--~~~i~~V~LvGGssriP~v~~~i~~~f~--------~~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 309 EPVRQALKDAGLS--ASDIDEVILVGGSTRIPAVQELVKDFFG--------KEPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HHHHHHHHHcCCC--HhHCcEEEEECCcccChHHHHHHHHHhC--------CcccCCcCcHHHHHHHHHHHHHH
Confidence 3444555444322 2335789999999999999999988763 12334456778889999987753
No 31
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=97.05 E-value=0.00092 Score=53.86 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
+.|.+++.+.. +...-...|+|+||+|.+|.+.+.|.+.+.. .+....+|..++-.||++.|..
T Consensus 352 ~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 352 EPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 34455555543 2233357899999999999999999887732 2233446777888898887753
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=97.03 E-value=0.00062 Score=54.25 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=37.6
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
...|+|+||+|.+|.+.+.|.+.+. ..+....+|..++-.||++.|..
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence 4779999999999999999987762 23344557788888999987763
No 33
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.92 E-value=0.0014 Score=46.52 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=36.4
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL 74 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~ 74 (105)
.|+++||.+..+++.++|.+.| ...|..++++++.+=+|+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHh
Confidence 6999999999999999999988 45677788888888888875
No 34
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.86 E-value=0.00059 Score=52.03 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=41.8
Q ss_pred hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+-+.|+++||.++.+|+.+.|++.| ..++..|++|++..-+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~L--------g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLL--------GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHh--------CCcEEECCcccHHHHHHHHHHhc
Confidence 3345999999999999999999998 46677889999999999999874
No 35
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.84 E-value=0.0012 Score=52.51 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
+.|.+++..... ...-...|+|+||+|.+|++.+++.+.+.. .+....+|..++-.||++.|..
T Consensus 297 ~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 297 SICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred HHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 344444444322 222347799999999999999999987632 1233457778888999887753
No 36
>PRK13411 molecular chaperone DnaK; Provisional
Probab=96.83 E-value=0.0013 Score=52.96 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.|.+++.... +...-...|+|+||+|.+|.+.++|.+.+.. ..+....+|..++-.||++.|.
T Consensus 312 ~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~-------~~~~~~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 312 EPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGG-------KQPDRSVNPDEAVALGAAIQAG 375 (653)
T ss_pred HHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCC-------cCcCCCCCchHHHHHHHHHHHH
Confidence 34445554443 3334457899999999999999999876631 1233344677788888888775
No 37
>PLN03184 chloroplast Hsp70; Provisional
Probab=96.75 E-value=0.0019 Score=52.21 Aligned_cols=63 Identities=11% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.|.+++.....+. .=...|+|+||+|.+|.+.++|.+.+.. .+...-+|..++-.||++.|.
T Consensus 350 ~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~~~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 350 TPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTGK--------DPNVTVNPDEVVALGAAVQAG 412 (673)
T ss_pred HHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhCC--------CcccccCcchHHHHHHHHHHH
Confidence 34445555544332 2237899999999999999999887732 112233567778888888765
No 38
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.67 E-value=0.0017 Score=51.88 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=36.4
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
...|+|+||+|.+|.+.++|.+.+.. .+....+|..++-.||++.|.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQAD 375 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHH
Confidence 46799999999999999999887632 122345677888889998775
No 39
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.65 E-value=0.0017 Score=47.68 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=40.2
Q ss_pred HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEe-CCCCCcccceehhhhhcc
Q psy8375 21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVV-LPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~-~~~~~~~~aW~G~s~~a~ 77 (105)
.+-+.|+++||.+.-+|+.+.|+++| ..+|. .+++|++..-+|++++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~L--------g~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERIL--------GIKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHh--------CCCceeCCCCccHHHHHHHHHHHH
Confidence 34557999999999999999999998 33444 366799999999999884
No 40
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.58 E-value=0.0028 Score=51.17 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
-...|+|+||+|.+|.+.+.+.+.+.. .....-+|..++-.||++.|.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg~--------~~~~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQK--------DPFRGVNPDEAVALGAATLGG 400 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhCC--------CccccCCCchHHHHhHHHHHH
Confidence 346799999999999999999987732 112234677788889888875
No 41
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.57 E-value=0.0029 Score=47.91 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=41.2
Q ss_pred eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 26 Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
|+++||++...++..-+++.| ..+|..|++|++.--.|++++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999998 67899999999999999999886
No 42
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.55 E-value=0.0022 Score=46.42 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=39.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.+|+++||.+.-+++.+.|+++|... ...+.|..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999988432 124556667889999888988764
No 43
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.48 E-value=0.0027 Score=51.29 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.-...|+|+||+|.+|.+.+.+.+.+.. .+....+|..++-.||++.|..
T Consensus 327 ~dId~VvLVGGssRiP~V~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 327 EDIDEVVLVGGSTRMPMVQQLVRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred hhCcEEEEECCccccHHHHHHHHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 3446899999999999999998876521 1223335677788888887754
No 44
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.42 E-value=0.0024 Score=50.17 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.++|.+++...... ..=...|+|+||+|.+|-+.+.|.+.+. -.+....+|..++-.||+++|.
T Consensus 312 ~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~--------~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 312 IEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG--------KKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp HHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT--------SEEB-SS-TTTHHHHHHHHHHH
T ss_pred cccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc--------cccccccccccccccccccchh
Confidence 34555556554322 2234679999999999999999877663 1234445677888899998875
No 45
>PRK11678 putative chaperone; Provisional
Probab=96.27 E-value=0.0038 Score=48.29 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
++|.+++...... ...|+|+||+|.+|++.+.+.+.+.. ..+.. .+|-.++-.|.++.|.
T Consensus 387 ~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~~-g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 387 ELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALAQQLPG-------IPIVG-GDDFGSVTAGLARWAQ 446 (450)
T ss_pred HHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHHHHCCC-------CcEEe-CCCcchHHHHHHHHHH
Confidence 4455555544322 25699999999999999998876621 22222 3566777888887764
No 46
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.24 E-value=0.0049 Score=47.19 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=42.5
Q ss_pred hhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 22 LYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 22 l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
+-..|+++||.++-+++...|++.|....+ ..+|..|++|++..-+|++++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 446799999999999999999999954332 3457778899999999998875
No 47
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=96.16 E-value=0.0081 Score=48.38 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.|.+++.....+. .-...|+|+||+|.+|.+.+.|.+.+.. ..+....+|..++-.||++.|.
T Consensus 317 ~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~i~~~f~~-------~~~~~~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 317 QPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSLIKDFFNG-------KEPCKSINPDEAVAYGAAVQAA 380 (653)
T ss_pred HHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHHHHHHHhCC-------CCCCCCCCcchHHhhhhhhhHH
Confidence 34555555554332 3347899999999999999999876632 1123334677788888888764
No 48
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=96.13 E-value=0.0049 Score=45.65 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=22.2
Q ss_pred HhhcCeEEecCCCCCccHHHHHHHHH
Q psy8375 21 HLYENIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 21 ~l~~nIvl~GG~s~~~g~~~Rl~~el 46 (105)
.-.+.|+||||++.++||.+.|.++|
T Consensus 273 ~~i~~I~L~Ggga~l~gL~~~l~~~l 298 (340)
T PF11104_consen 273 ESIERIYLSGGGARLPGLAEYLSEEL 298 (340)
T ss_dssp ---SEEEEESGGGGSTTHHHHHHHHH
T ss_pred CCCCEEEEECCccchhhHHHHHHHHH
Confidence 34567999999999999999999999
No 49
>PRK13317 pantothenate kinase; Provisional
Probab=95.80 E-value=0.01 Score=43.22 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHcCCcc-hHHHhhcCeEEec-CCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 2 GVSECIVDVIRSCPME-AQPHLYENIVITG-GCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 2 gi~~~I~~si~~~~~d-~r~~l~~nIvl~G-G~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
||..+|.+.|..+-.- .|..-.++|+++| |.+..|++.++|.+.+.. ...++..|++|++..-+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 3445555555443211 1223337899999 799999999999987742 235677788999999999998764
No 50
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.66 E-value=0.018 Score=42.44 Aligned_cols=25 Identities=16% Similarity=0.477 Sum_probs=23.0
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
.+.|+||||++.++||.+.|++++.
T Consensus 283 i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 283 LDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred cceEEEECccccchhHHHHHHHHHC
Confidence 5679999999999999999999994
No 51
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.17 E-value=0.0053 Score=43.90 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.+.|...+.+.+..... |+++||...-+.+.+.|.+.|++..+.. .+..+..|.+.+..||.++|
T Consensus 207 a~~i~~~~~~~~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 207 AELIKAVLKRLGPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHTCTCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 34444445554433211 9999999887777777766665555432 33445578899999998875
No 52
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=94.39 E-value=0.044 Score=42.20 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeC----------CCCCcccceehhhh
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL----------PSNPMTYAWEGGKL 74 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~----------~~~~~~~aW~G~s~ 74 (105)
++|...|.+.-.. ..+-..|+||||++++||+.+-..+-+.. ++++-. ..+|.|++-.|.-.
T Consensus 305 ~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p~fs~avGl~~ 376 (418)
T COG0849 305 ELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNPAFSTAVGLLL 376 (418)
T ss_pred HHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCchhhhhHHHHH
Confidence 3444444444332 45667799999999999998766655542 233322 23588999999877
Q ss_pred hccc
Q psy8375 75 MSLD 78 (105)
Q Consensus 75 ~a~l 78 (105)
++..
T Consensus 377 ~~~~ 380 (418)
T COG0849 377 YGAL 380 (418)
T ss_pred HHhh
Confidence 6663
No 53
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.83 E-value=0.053 Score=40.47 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=30.5
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+.+|+|+||++.+ +.+.|+ +..|. +...++|+++.-+|-..++.
T Consensus 292 ~d~IiL~GGGA~l--l~~~lk----~~f~~-----~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI--FFDSLS----HWYSD-----VEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH--HHHHHH----HHcCC-----eEEcCChHHHHHHHHHHHHH
Confidence 5679999999976 444444 44442 34557899998888777665
No 54
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=91.61 E-value=0.23 Score=35.26 Aligned_cols=42 Identities=24% Similarity=0.485 Sum_probs=34.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK 73 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s 73 (105)
..++|+||.++.||+.+-++++| ..+|+.|..|.|..=+|-+
T Consensus 228 ~dl~lvGGac~~~g~e~~Fe~~l--------~l~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 228 TDLWLVGGACMQPGVEELFEKQL--------ALQVHLPQHPLYMTPLGIA 269 (277)
T ss_pred cceEEecccccCccHHHHHHHHh--------ccccccCCCcceechhhhh
Confidence 45889999999999999999999 5667777777776655543
No 55
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=89.10 E-value=0.32 Score=36.90 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHh
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
+.|.+++.+.+.+ ...|++|||++.=+-|.+||++.+.
T Consensus 272 ~sI~~~i~~~~~~-----~~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 272 QSIADAIRRFPPQ-----PDEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp HHHHHHHHHH-TT------EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred HHHHHHHHhcCCC-----CceEEEECCCcCCHHHHHHHHhhCC
Confidence 3445555554433 4579999999999999999998874
No 56
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=88.86 E-value=0.57 Score=34.47 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=29.5
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
+++|+|+||++.+ +++.|+...|. .+|...+||+++.-+|-..++
T Consensus 274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhh
Confidence 6689999999962 33445555553 345556788888777754443
No 57
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=88.28 E-value=1.3 Score=31.76 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=31.5
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhc
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.|+|.|+.+..+-|-+++.+.++.. +....+.|........++-.||+.++
T Consensus 236 ~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 236 CVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred EEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence 3777777666666777777777664 22124555555545566677887665
No 58
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=83.67 E-value=1.5 Score=33.35 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=20.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHH
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el 46 (105)
+.|++|||++.=|-|.+||+.++
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999887
No 59
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=83.00 E-value=0.37 Score=32.44 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=32.5
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||.++-+-+.+.+.+=+. ..|..++. ...+-.|++++|.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~--------~~V~~~~~-~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG--------RPVVRPEV-EEASALGAALLAA 195 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT--------SEEEEESS-STHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC--------CceEeCCC-CchHHHHHHHHHH
Confidence 5679999999999988888877663 33333332 3456778887764
No 60
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=82.83 E-value=0.88 Score=33.54 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=23.6
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceeh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEG 71 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G 71 (105)
+++|+|+||++.+ |.+.|.+.. +.. .-++..+.+|+++--.|
T Consensus 273 ~~~I~~vGGGA~l--l~~~Ik~~~----~~~-~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 273 IDRIFFVGGGAIL--LKDAIKEAF----PVP-NERIVIVDDPQFANVRG 314 (318)
T ss_dssp -SEEEEESTTHHH--HHHHHHHHH----T---GGGEE--SSGGGHHHHH
T ss_pred CCeEEEECCcHHH--HHHHHHHhh----CCC-CCcEEECCCchhhHHHH
Confidence 4679999999943 344444333 210 12466677899886665
No 61
>PRK09698 D-allose kinase; Provisional
Probab=81.19 E-value=5 Score=28.92 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=32.0
Q ss_pred CeEEecCCCCCcc-HHHHHHHHHhhhCCC---CceeEEeCCCCCcccceehhhhhc
Q psy8375 25 NIVITGGCCGFAG-IRDRVESDVRTLAPD---EFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 25 nIvl~GG~s~~~g-~~~Rl~~el~~~~p~---~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.|+|.||.+.... +.++|.+++++.... ...++|..+.....+.-+||+.++
T Consensus 239 ~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 239 AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 3677777666543 567888888876531 223555555444556667887665
No 62
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=77.61 E-value=6 Score=28.53 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=31.4
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhC-CCCceeEEeCCCCCcccceehhhhhc
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLA-PDEFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~-p~~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.|+|.||.+..+-|-+++.+.+.+.. |...++.|........++-.||+.++
T Consensus 248 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 248 LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 36777776666777788888887643 22223445444444455666877655
No 63
>PRK09557 fructokinase; Reviewed
Probab=76.63 E-value=7.6 Score=28.04 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=30.7
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCC-CCceeEEeCCCCCcccceehhhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAP-DEFDVNVVLPSNPMTYAWEGGKLM 75 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p-~~~~v~v~~~~~~~~~aW~G~s~~ 75 (105)
.|+|.||.+..+.|-+.+.+.+++... ...+++|..+.....+.-.||+.+
T Consensus 247 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 247 VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 377777777777777788888876543 222455554443344555576653
No 64
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=75.14 E-value=6.9 Score=28.33 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=31.5
Q ss_pred CeEEecCCCCC-ccHHHHHHHHHhhhCCC--CceeEEeCCCCCcccceehhhhhc
Q psy8375 25 NIVITGGCCGF-AGIRDRVESDVRTLAPD--EFDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 25 nIvl~GG~s~~-~g~~~Rl~~el~~~~p~--~~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.|+|.|+.+.. +-|.+++.+.++..... ...+.|........++-.|++.++
T Consensus 254 ~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 254 AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 37777776653 56888888888765422 123445444444555667887664
No 65
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=74.34 E-value=3.2 Score=33.31 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=32.3
Q ss_pred HhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 21 ~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.=..-|+++||+|.+|=..+.+.+.+. -......+|..++-.|+++.|.
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~--------~~~~~~inpdeava~GAa~qa~ 356 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFG--------KEPEKSINPDEAVALGAAIQAA 356 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhC--------ccccccCCccHHHHHHHHHHHH
Confidence 344569999999999977777776664 1122333556666667666554
No 66
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.34 E-value=2.9 Score=31.61 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=22.5
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
...|+|+||++.+.|+.+-+++.|.
T Consensus 288 id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 288 IDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred eeEEEEecCCcchhhHHHHHHHHhC
Confidence 3679999999999999999999884
No 67
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=73.87 E-value=4.4 Score=28.75 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.4
Q ss_pred CCccHHHHHHHHHhhhCCC-CceeEEeCCCCCcccceehhhhhccc
Q psy8375 34 GFAGIRDRVESDVRTLAPD-EFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 34 ~~~g~~~Rl~~el~~~~p~-~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.+|+|.+++++-|+.+++. ..+|.+....| .+=+||++.|.+
T Consensus 198 ~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~d---gsg~GAAi~AA~ 240 (243)
T PF03727_consen 198 KYPNFRERLQEALDELLPEEGCKVEFVLSED---GSGVGAAIAAAV 240 (243)
T ss_dssp HSTTHHHHHHHHHHHHSTT-CEEEEEEE-SS---THHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhcccccceEEEEEecC---chHHHHHHHHHH
Confidence 5999999999999999987 44677766655 467788887653
No 68
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=73.08 E-value=5.3 Score=29.80 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCC-ceeEEeCCC--CCcccceehhhhhcc
Q psy8375 4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE-FDVNVVLPS--NPMTYAWEGGKLMSL 77 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~-~~v~v~~~~--~~~~~aW~G~s~~a~ 77 (105)
.|.|...|-.+-++.+++. |+|+|-.+.+|-|-.-+...|+...... ..+.|..-. -..--+-.||+++|+
T Consensus 258 ~e~vvK~v~tllps~~pd~---iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAn 331 (374)
T COG2441 258 IEGVVKDVFTLLPSTYPDA---IYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIAN 331 (374)
T ss_pred HHHHHHHHHHhccccCcce---EEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhh
Confidence 3445555555555555443 9999999999988877777777654431 223332211 112235567777775
No 69
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=70.08 E-value=4.9 Score=29.47 Aligned_cols=66 Identities=11% Similarity=-0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCc-chHHHhhcCeEEecC-CCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhh
Q psy8375 3 VSECIVDVIRSCPM-EAQPHLYENIVITGG-CCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK 73 (105)
Q Consensus 3 i~~~I~~si~~~~~-d~r~~l~~nIvl~GG-~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s 73 (105)
|-.+|.+.|..+-. --+..-.++|+++|| ....|.+.+++..-+.- +..++..+.+..+..-+||.
T Consensus 210 Ll~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAa 277 (279)
T TIGR00555 210 LLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGAL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhc
Confidence 44555555544321 113344688999999 66788888888876642 33667777777787777765
No 70
>PRK15027 xylulokinase; Provisional
Probab=68.25 E-value=5.4 Score=30.93 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=30.9
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||+++-+-+.+-+.+-+ ...|....+...++=.|++++|.
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pv~~~~~~~~~~a~GaA~lA~ 433 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS--------GQQLDYRTGGDVGPALGAARLAQ 433 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh--------CCeEEeecCCCcchHHHHHHHHH
Confidence 456999999998887766666655 33443333333356778888765
No 71
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=67.42 E-value=6.3 Score=30.27 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=31.3
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.+.|+++||.++-+-+.+.+.+-+ ...|..+.. ..++=.|++++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~--------g~pv~~~~~-~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIF--------GTPVDVPEG-EEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHh--------CCceeecCC-CcchHHHHHHHHHH
Confidence 366999999999998877777655 223333332 23566788877653
No 72
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=62.68 E-value=6.2 Score=30.82 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=30.0
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||.++-+-+.+-+.+-+ ...|..+..++ ++=.|+++++.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~alGaAl~aa 452 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL--------GKDIVVPEMAE-TTALGAALLAG 452 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh--------CCceEecCccc-chHHHHHHHHH
Confidence 456999999999887766666555 33344333333 45678777764
No 73
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=62.42 E-value=8 Score=30.08 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.2
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|.++||.++-+-+.+-+.+-+ ...|..+..++ ++=+|++++|.
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pv~~~~~~e-~~alGaA~~a~ 445 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL--------GVPVVRPKVTE-TTALGAAYAAG 445 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc--------CCeeEecCCCc-chHHHHHHHHH
Confidence 466999999998887777776655 33333333333 44578777764
No 74
>KOG0100|consensus
Probab=61.26 E-value=6.3 Score=31.03 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=24.6
Q ss_pred CcchHHHhhcCeEEecCCCCCccHHHHHHHHH
Q psy8375 15 PMEAQPHLYENIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 15 ~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el 46 (105)
+.++.+.=...|+|+||++.||-..+-|..=+
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF 386 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFF 386 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHHHHHh
Confidence 45566666678999999999998777666544
No 75
>PRK00976 hypothetical protein; Provisional
Probab=60.90 E-value=17 Score=27.41 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.0
Q ss_pred CeEEecCCCCCc--cHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 25 NIVITGGCCGFA--GIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 25 nIvl~GG~s~~~--g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.|+|.||-+..+ .|.+++++.+.. . ...-...+.-+|++.++.
T Consensus 266 ~IVLGGGVS~~~e~~L~~~I~e~l~~------~----~a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 266 NVVLAGSVGEMDEPDVSERIKELLDK------K----VLVLGKESAAIGLALIAR 310 (326)
T ss_pred EEEEcCccccCchhHHHHHHHHHhcc------c----ccccCCchHHHHHHHHHH
Confidence 499999999887 556666655532 1 112224566778887664
No 76
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=59.49 E-value=5.7 Score=20.39 Aligned_cols=12 Identities=50% Similarity=0.534 Sum_probs=9.8
Q ss_pred ccceeHHHHHhh
Q psy8375 83 SFVVTKEEYEEE 94 (105)
Q Consensus 83 ~~~itk~ey~e~ 94 (105)
.-|||++||+|-
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 349999999983
No 77
>PRK00047 glpK glycerol kinase; Provisional
Probab=59.34 E-value=8.4 Score=30.00 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=29.9
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|.++||.++-+-+.+-+.+-+ ...|.....+. ++=+|++++|.
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~a~GaA~~A~ 449 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL--------GVPVERPVVAE-TTALGAAYLAG 449 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh--------CCeeEecCccc-chHHHHHHHHh
Confidence 467999999998887766666555 33444433333 44577777764
No 78
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=59.07 E-value=9 Score=18.62 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=15.1
Q ss_pred EEecCCCCCccHHHHHHHHHhhh
Q psy8375 27 VITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 27 vl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
|=|||.| |-|..+|.+||...
T Consensus 9 ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 9 ISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEESSS---HHHHHHHHHHHHHH
T ss_pred EECCCCC--hHHHHHHHHHHHHh
Confidence 4467766 88999999988653
No 79
>PRK14878 UGMP family protein; Provisional
Probab=58.27 E-value=5.7 Score=29.46 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=26.5
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS 62 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~ 62 (105)
.++|+|+||.++=.-+.++|.+.+++. .++|+.++
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 276 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVP 276 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 357999999999888999998887542 34566554
No 80
>KOG0101|consensus
Probab=58.23 E-value=8.6 Score=31.35 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.3
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
-..|+|+||+|.+|.+..-+++=+.. -.+..+-+|..++-.|+++-|..
T Consensus 335 i~~vvlVGGstriPk~~~ll~d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 335 IDEVVLVGGSTRIPKVQKLLEDFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred CceeEEecCcccchHHHHHHHHHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 45699999999999887766654421 11223335666777777776553
No 81
>PLN02295 glycerol kinase
Probab=55.24 E-value=14 Score=29.01 Aligned_cols=46 Identities=13% Similarity=0.027 Sum_probs=29.3
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|.++||.++-+-+.+-+.+-+ ...|..+..+. .+=+|++++|.
T Consensus 413 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pV~~~~~~e-~~alGaA~~A~ 458 (512)
T PLN02295 413 LFLLRVDGGATANNLLMQIQADLL--------GSPVVRPADIE-TTALGAAYAAG 458 (512)
T ss_pred cceEEEeccchhCHHHHHHHHHhc--------CCceEecCccc-cHHHHHHHHHH
Confidence 456899999998887777666555 33444433332 44567777664
No 82
>PRK03011 butyrate kinase; Provisional
Probab=54.85 E-value=16 Score=27.68 Aligned_cols=46 Identities=28% Similarity=0.318 Sum_probs=32.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK 73 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s 73 (105)
+-|+|+||-+.-+-|.+++.+.+..+. ++.|....+...+.-.|+.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHH
Confidence 448999999987777888888887664 4777776665455555554
No 83
>PRK04123 ribulokinase; Provisional
Probab=54.70 E-value=12 Score=29.59 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=27.8
Q ss_pred hcCeEEecCC-CCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGC-CGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~-s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||. |+-+-+.+-+.+-+ ...|..+..+. ++=+|++++|.
T Consensus 439 ~~~i~~~GGg~s~s~~w~Qi~ADv~--------g~pV~~~~~~e-~~alGaA~lA~ 485 (548)
T PRK04123 439 VEEVIAAGGIARKNPVLMQIYADVL--------NRPIQVVASDQ-CPALGAAIFAA 485 (548)
T ss_pred cceEEEeCCCcccCHHHHHHHHHhc--------CCceEecCccc-cchHHHHHHHH
Confidence 3579999999 88776666444433 33333333222 44568887765
No 84
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=54.38 E-value=7.3 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.5
Q ss_pred cceeHHHHHhh
Q psy8375 84 FVVTKEEYEEE 94 (105)
Q Consensus 84 ~~itk~ey~e~ 94 (105)
.|||.+||+|-
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 59999999984
No 85
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=53.57 E-value=6.8 Score=29.61 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=33.2
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCC------Ccccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSN------PMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~------~~~~aW~G~s~~a~ 77 (105)
.++++++||.+.=.-|.++|++.+.. ..++++.|+- ...-+|.|...+.+
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~-----~~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKE-----RGGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH-----cCCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 36699999999888888888776643 2456666541 12347777665544
No 86
>KOG2707|consensus
Probab=53.06 E-value=20 Score=27.56 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=42.7
Q ss_pred HHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEE-eCCCCCcccceehhhhhccc
Q psy8375 8 VDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNV-VLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 8 ~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v-~~~~~~~~~aW~G~s~~a~l 78 (105)
..+|+.|+ ...+.-...|++||.+.=.-+..+|++...+..+....+.- +..++...-+|.|--+|-..
T Consensus 293 ~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 293 HRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 34455555 33344456799999999888888888877665544332111 11224456789998877554
No 87
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=52.98 E-value=7.8 Score=28.61 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=21.4
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
..+|+|+||.++=.-+.++|.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 35799999999888888888887644
No 88
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=52.50 E-value=18 Score=27.96 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=30.7
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.+.|+++||.++=+-+.+-+.+-+ ...|..+..++ ++=.|++++|..
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~~lGaA~~a~~ 440 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANML--------DIPVKVVDDAE-TTVAGAAMFGFY 440 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhc--------CCeeEeccCCc-chHHHHHHHHHH
Confidence 456999999998776666555444 34444443333 456899988864
No 89
>PRK10331 L-fuculokinase; Provisional
Probab=50.95 E-value=20 Score=27.74 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=30.8
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
.+.|+++||.++-+-+.+-+.+-+ ...|..+..+ .++=.|++++|..
T Consensus 390 ~~~i~~~GGga~s~~w~Qi~Advl--------g~pV~~~~~~-e~~a~GaA~la~~ 436 (470)
T PRK10331 390 ASELLLVGGGSRNALWNQIKANML--------DIPIKVLDDA-ETTVAGAAMFGWY 436 (470)
T ss_pred CceEEEEcccccCHHHHHHHHHhc--------CCeeEecCcc-cchHHHHHHHHHH
Confidence 467999999998887766666555 3334333332 3567788887754
No 90
>KOG3445|consensus
Probab=49.93 E-value=19 Score=23.87 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=22.8
Q ss_pred cCCCCCccHHHHHHHHHhhhCCCCceeEEeCC
Q psy8375 30 GGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61 (105)
Q Consensus 30 GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~ 61 (105)
||+| .|+.+-|++||-.+...+-.|.|+..
T Consensus 34 ggSS--rGmR~Fle~~L~~~a~enP~v~i~v~ 63 (145)
T KOG3445|consen 34 GGSS--RGMREFLESELPDLARENPGVVIYVE 63 (145)
T ss_pred CCcc--HHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 7777 79999999999888776555655543
No 91
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=49.88 E-value=17 Score=28.66 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=28.3
Q ss_pred hcCeEEecCC-CCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGC-CGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~-s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||. |+-+-+.+-+.+-+ ...|..+..++ ++=.|++++|.
T Consensus 436 ~~~i~~~GGg~a~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~a~GaA~lA~ 482 (536)
T TIGR01234 436 VEELMAAGGIARKNPVIMQIYADVT--------NRPLQIVASDQ-APALGAAIFAA 482 (536)
T ss_pred cceEEEeCCccccCHHHHHHHHHhh--------CCeeEeccCCc-chhHHHHHHHH
Confidence 3669999999 88887777544444 33343333322 44567777654
No 92
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=49.37 E-value=34 Score=25.74 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred CeEEecC--CCCCc-cHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 25 NIVITGG--CCGFA-GIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 25 nIvl~GG--~s~~~-g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
+|+|+|- .+..| .|.+++.+-|. .+|.++.. .++-+|++++|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~------~~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLS------CKVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhC------CCeEEecc----hhhhhhHHHHHH
Confidence 7999998 67777 77777776664 24555543 567778888775
No 93
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=23 Score=26.91 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=33.4
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCC------Ccccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSN------PMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~------~~~~aW~G~s~~a~ 77 (105)
.+.++++||.+.=..|.++|++..+ ...++++.|+. .-.-+|.|...+.+
T Consensus 262 ~~~lvi~GGVaaN~~LR~~l~~~~~-----~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 262 KKELVIAGGVAANSRLREMLEEMCK-----ERGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred CCEEEEeccHHHhHHHHHHHHHHHH-----hcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 3459999999988888887776664 12366665542 22347888777665
No 94
>PF10784 Plasmid_stab_B: Plasmid stability protein; InterPro: IPR019720 This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterised but it may be involved in the control of plasmid partition.; PDB: 2JD3_A.
Probab=48.22 E-value=5.2 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEec
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITG 30 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~G 30 (105)
..+.+.|.+.|...|.+++.+.+++|
T Consensus 16 ~~a~~~iesv~~~~Rgdf~R~aliaG 41 (72)
T PF10784_consen 16 RRACATIESVPQRERGDFQRAALIAG 41 (72)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHhHhhHHHHHHHHHH
Confidence 45678889999999999999998887
No 95
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=47.78 E-value=18 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=29.0
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||.++-+-+.+-+.+-+ ...|..+..++ ++=.|++++|.
T Consensus 402 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pv~~~~~~e-~~a~GaA~la~ 447 (505)
T TIGR01314 402 LNMIQATGGFASSEVWRQMMSDIF--------EQEIVVPESYE-SSCLGACILGL 447 (505)
T ss_pred CcEEEEecCcccCHHHHHHHHHHc--------CCeeEecCCCC-cchHHHHHHHH
Confidence 456999999998776666665554 33333333332 55678777764
No 96
>KOG1201|consensus
Probab=47.70 E-value=50 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=25.0
Q ss_pred cchHHHhhcC-eEEecCCCCCccHHHHHHHHHhhhCC
Q psy8375 16 MEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAP 51 (105)
Q Consensus 16 ~d~r~~l~~n-Ivl~GG~s~~~g~~~Rl~~el~~~~p 51 (105)
+--++++... +++|||++ |+..-+..|+.+.-.
T Consensus 30 ~~~~k~v~g~~vLITGgg~---GlGr~ialefa~rg~ 63 (300)
T KOG1201|consen 30 PKPLKSVSGEIVLITGGGS---GLGRLIALEFAKRGA 63 (300)
T ss_pred ccchhhccCCEEEEeCCCc---hHHHHHHHHHHHhCC
Confidence 3355666665 78899998 999999999977643
No 97
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=47.10 E-value=30 Score=26.22 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=35.8
Q ss_pred eEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC---CCcccceehhhhhcc
Q psy8375 26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS---NPMTYAWEGGKLMSL 77 (105)
Q Consensus 26 Ivl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~---~~~~~aW~G~s~~a~ 77 (105)
|+|+|-.+.+|.|.+-+...|....+ +++.... -..-.+-.|++++|+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhh
Confidence 99999999999999999999988877 3332211 112347789998886
No 98
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=46.56 E-value=20 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=17.2
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++|+++||++ |+...+.+.|.+
T Consensus 2 ~k~ilItGas~---giG~~la~~l~~ 24 (248)
T PRK06947 2 RKVVLITGASR---GIGRATAVLAAA 24 (248)
T ss_pred CcEEEEeCCCC---cHHHHHHHHHHH
Confidence 45799999987 777777777654
No 99
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.39 E-value=47 Score=23.84 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=27.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~ 60 (105)
.+|++++|++...++..++.+.|.... ....+.|..
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~ 206 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVT 206 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEE
Confidence 579999999999999999998887643 334555544
No 100
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.64 E-value=24 Score=25.28 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=13.9
Q ss_pred cC-eEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 EN-IVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~n-Ivl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.| |++|||+| |+.--|.+.+.+
T Consensus 5 gnTiLITGG~s---GIGl~lak~f~e 27 (245)
T COG3967 5 GNTILITGGAS---GIGLALAKRFLE 27 (245)
T ss_pred CcEEEEeCCcc---hhhHHHHHHHHH
Confidence 45 99999999 544444444433
No 101
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=44.42 E-value=21 Score=28.02 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=28.7
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|+++||.++-+-+.+.+.+=+ ...|..+.+++ ++=+|++++|.
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~alGaA~lA~ 455 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVT--------GLPVKVPVVKE-ATALGCAIAAG 455 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhc--------CCeeEEecccC-chHHHHHHHHH
Confidence 356999999998887766555544 34444443332 44567777664
No 102
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=44.21 E-value=27 Score=20.39 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 6 CIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 6 ~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
.-.+.+..+|++.|.++...|.=.|..+ |..-+++.+-|+..
T Consensus 28 ~AA~VL~~lp~e~r~~v~~Ria~~~~v~--~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 28 QAAEVLSQLPEELRAEVVRRIARLESVS--PEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHTCCCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHH
Confidence 3456677788888888888877666555 66666666666543
No 103
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=43.72 E-value=23 Score=27.98 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=29.7
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
.+.|.++||.++-+-+.+-+.+=+ ...|..+.+++ ++=+|++++|.
T Consensus 444 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~alGaA~lA~ 489 (541)
T TIGR01315 444 IKSIFMSGGQCQNPLLMQLIADAC--------DMPVLIPYVNE-AVLHGAAMLGA 489 (541)
T ss_pred ccEEEEecCcccCHHHHHHHHHHH--------CCeeEecChhH-HHHHHHHHHHH
Confidence 356999999998887655555444 34444444433 45678888775
No 104
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=42.58 E-value=14 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=25.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS 62 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~ 62 (105)
++|+|+||.++=.-+.++|.+.+.. ..++++.++
T Consensus 260 ~~vvlsGGVa~N~~L~~~l~~~~~~-----~g~~v~~~~ 293 (305)
T TIGR00329 260 KELVLVGGVSANKRLREMLETLCQE-----LNVEFYYPP 293 (305)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHH-----CCCEEECCC
Confidence 4799999999888888888877744 235566554
No 105
>PLN02669 xylulokinase
Probab=42.56 E-value=21 Score=28.47 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=28.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
+.|+++||.|.-+-+.+-+.+=+ ...|.....+ .++=+||+++|..
T Consensus 447 ~~i~~~GGgs~s~~w~Qi~ADVl--------g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 447 KRIIATGGASANQSILKLIASIF--------GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred cEEEEEcChhcCHHHHHHHHHHc--------CCCeEecCCC-CchHHHHHHHHHH
Confidence 46999999998776655444433 2233333333 2456888887764
No 106
>PLN02596 hexokinase-like
Probab=42.40 E-value=29 Score=27.57 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhccccc
Q psy8375 34 GFAGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 34 ~~~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
..|+|.+++++-|+++++.. .+|.+....| .+=+||+++|.+.+
T Consensus 440 ~~p~f~~~l~~al~ellg~~~~~~i~~~~s~D---GSG~GAAl~AA~~~ 485 (490)
T PLN02596 440 HYRVFRNYLHSSVWEMLGSELSDNVVIEHSHG---GSGAGALFLAACQT 485 (490)
T ss_pred eCcCHHHHHHHHHHHHhCcccCCcEEEEEccC---chhHHHHHHHHhhc
Confidence 38999999999999998643 3566665555 46679999887643
No 107
>PTZ00107 hexokinase; Provisional
Probab=41.13 E-value=29 Score=27.30 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred eEEecCCC-CCccHHHHHHHHHhhhCC-CCceeEEeCCCCCcccceehhhhhccc
Q psy8375 26 IVITGGCC-GFAGIRDRVESDVRTLAP-DEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 26 Ivl~GG~s-~~~g~~~Rl~~el~~~~p-~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
|-+-|+.- ..|+|.+++++-|+.++. ...+|.+....| .+=+||+++|..
T Consensus 408 VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D---GSg~GAAl~AA~ 459 (464)
T PTZ00107 408 VAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD---GSGKGAAIIAAM 459 (464)
T ss_pred EEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC---chHHHHHHHHHH
Confidence 44444443 389999999999999874 334677766655 466788888764
No 108
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=40.69 E-value=1.6 Score=27.72 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhhh----------CCCCceeEEeCCCCCcccceehhhhhcccccccccceeHHHHHhhChhH
Q psy8375 37 GIRDRVESDVRTL----------APDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLAL 98 (105)
Q Consensus 37 g~~~Rl~~el~~~----------~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~~~~~~itk~ey~e~G~~~ 98 (105)
=+..+|.+|+... +|..+.|.+...+...+.+| +..+...+..+-...+..+.|.-.|+-.
T Consensus 28 EIa~~L~remd~~a~~~~~~r~~aPN~y~V~Ls~~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v~ 98 (116)
T PF12401_consen 28 EIAKALRREMDDQARVVSRGRTLAPNVYTVELSPEDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPVT 98 (116)
T ss_dssp HHHHHHHHHHHHT-B---TT--B---EEEEEEEHHHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--E
T ss_pred HHHHHHHHHHHhCCeecCCCCEEcCeeEEEEECHHHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCEE
Confidence 3667777777654 34444555444444456777 5555444554445566677777777643
No 109
>KOG0683|consensus
Probab=39.93 E-value=59 Score=25.01 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=44.9
Q ss_pred chHHHhhcCeEEecCCCC-Ccc-----------HH----HHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 17 EAQPHLYENIVITGGCCG-FAG-----------IR----DRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 17 d~r~~l~~nIvl~GG~s~-~~g-----------~~----~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
-.+..||.-|-++|-+.- +|| +. -.+.+++-+.+...+.|-+...+.|..+-|.|+..
T Consensus 186 hy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~WngaG~------ 259 (380)
T KOG0683|consen 186 HYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWNGAGC------ 259 (380)
T ss_pred hHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCcccCccc------
Confidence 356778888888876632 222 10 01111221111222245555566788899999442
Q ss_pred ccccceeHHHHHhhChhHHhh
Q psy8375 81 FYSFVVTKEEYEEEGLALCYE 101 (105)
Q Consensus 81 ~~~~~itk~ey~e~G~~~~~~ 101 (105)
.....|++++++.|+.++..
T Consensus 260 -Htn~ST~~mr~~~g~~~i~~ 279 (380)
T KOG0683|consen 260 -HTNFSTKEMREAGGLKIIEE 279 (380)
T ss_pred -ccccchhHHHhccCHHHHHH
Confidence 23456999999999887643
No 110
>KOG2495|consensus
Probab=39.55 E-value=59 Score=25.78 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=29.6
Q ss_pred HHHHHHHcC-----CcchHHHhhcCeEEecCCCCCc---cHHHHHHHHHhhhCCC
Q psy8375 6 CIVDVIRSC-----PMEAQPHLYENIVITGGCCGFA---GIRDRVESDVRTLAPD 52 (105)
Q Consensus 6 ~I~~si~~~-----~~d~r~~l~~nIvl~GG~s~~~---g~~~Rl~~el~~~~p~ 52 (105)
.|.+++++. +.+.|+.++.=+|+-||.|..- -+.+.+.++++...|.
T Consensus 197 ~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~ 251 (491)
T KOG2495|consen 197 KVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPE 251 (491)
T ss_pred HHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhc
Confidence 355556553 4566777776666666666532 1556777888887774
No 111
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=39.38 E-value=38 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=21.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDE 53 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~ 53 (105)
.||+++||++ -.+.=|.+.|..+.|..
T Consensus 174 ~NILisGGTG---SGKTTlLNal~~~i~~~ 200 (355)
T COG4962 174 CNILISGGTG---SGKTTLLNALSGFIDSD 200 (355)
T ss_pred eeEEEeCCCC---CCHHHHHHHHHhcCCCc
Confidence 6999999999 46677888888877754
No 112
>PRK06924 short chain dehydrogenase; Provisional
Probab=39.20 E-value=30 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
++|+++||++ |+...+.++|.+.
T Consensus 2 k~vlItGasg---giG~~ia~~l~~~ 24 (251)
T PRK06924 2 RYVIITGTSQ---GLGEAIANQLLEK 24 (251)
T ss_pred cEEEEecCCc---hHHHHHHHHHHhc
Confidence 5689999987 8888888887653
No 113
>PLN02914 hexokinase
Probab=38.50 E-value=32 Score=27.32 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=35.4
Q ss_pred eEEecCCC-CCccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhcccc
Q psy8375 26 IVITGGCC-GFAGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMSLDP 79 (105)
Q Consensus 26 Ivl~GG~s-~~~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a~l~ 79 (105)
|=+-|+.- ..|+|.+++++-|.+++... .+|.+....| .+=+||+++|.+.
T Consensus 434 VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~D---GSGvGAAl~AA~~ 487 (490)
T PLN02914 434 VAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKD---GSGIGAALLAATN 487 (490)
T ss_pred EEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccC---chHHHHHHHHHHh
Confidence 33444433 48999999999999988543 2566666655 4677999888653
No 114
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=38.26 E-value=42 Score=21.86 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCcchHHHhhcCeEE
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYENIVI 28 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~nIvl 28 (105)
..+++.+++..+|++.|. ++.||++
T Consensus 17 fe~La~~A~d~lP~efr~-l~~~vvi 41 (136)
T COG3824 17 FEELASDALDHLPQEFRD-LMGNVVI 41 (136)
T ss_pred HHHHHHHHHHhCcHHHHH-HhcCeEE
Confidence 357888999999999985 6677554
No 115
>PRK14623 hypothetical protein; Provisional
Probab=38.20 E-value=19 Score=22.58 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEe-cCCCCCccHHHH
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVIT-GGCCGFAGIRDR 41 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~-GG~s~~~g~~~R 41 (105)
.++-+++.+........+-+ ++ ||...+|||...
T Consensus 70 aAvn~A~~k~~~~~~~~m~~---~t~~g~~~~PG~~~~ 104 (106)
T PRK14623 70 LTLNKAIEKATEINEAELGA---VAKEGMPDIPGMDNM 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCchhh
Confidence 34444555555555555544 66 466568998764
No 116
>PRK00292 glk glucokinase; Provisional
Probab=37.90 E-value=31 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=25.8
Q ss_pred CeEEecCCCC-C-ccHHH-HHHHHHhhhC--CCC-ceeEEeCCCCCcccceehhhhhc
Q psy8375 25 NIVITGGCCG-F-AGIRD-RVESDVRTLA--PDE-FDVNVVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 25 nIvl~GG~s~-~-~g~~~-Rl~~el~~~~--p~~-~~v~v~~~~~~~~~aW~G~s~~a 76 (105)
.|+|.||.+. . +-|.+ .+.+++.... +.. .++.|....++ .+...|++.++
T Consensus 257 ~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~agl~GAa~~~ 313 (316)
T PRK00292 257 GVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHP-QPGLLGAGAYL 313 (316)
T ss_pred eEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCC-ChHHHHHHHHH
Confidence 5888888772 3 22333 4555555422 211 12333333333 56778887654
No 117
>PRK05650 short chain dehydrogenase; Provisional
Probab=37.00 E-value=38 Score=23.58 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=16.5
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+|+++||++ |+...+.++|.+
T Consensus 2 ~vlVtGasg---gIG~~la~~l~~ 22 (270)
T PRK05650 2 RVMITGAAS---GLGRAIALRWAR 22 (270)
T ss_pred EEEEecCCC---hHHHHHHHHHHH
Confidence 689999988 777777777754
No 118
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=36.98 E-value=18 Score=27.77 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.4
Q ss_pred HcCCcchHHHhhcCeEEecCCCCC
Q psy8375 12 RSCPMEAQPHLYENIVITGGCCGF 35 (105)
Q Consensus 12 ~~~~~d~r~~l~~nIvl~GG~s~~ 35 (105)
.-+|+.+|+.+..+|+|+||.+.=
T Consensus 208 ~~i~~~vr~~~~~~IvI~G~~gsG 231 (399)
T PRK08099 208 EYIPTEVRPFFVRTVAILGGESSG 231 (399)
T ss_pred HhcCHHHhhCCCcEEEEEcCCCCC
Confidence 446889999999999999998853
No 119
>PRK07024 short chain dehydrogenase; Provisional
Probab=35.41 E-value=40 Score=23.29 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.++|.+
T Consensus 3 ~~vlItGas~---gIG~~la~~l~~ 24 (257)
T PRK07024 3 LKVFITGASS---GIGQALAREYAR 24 (257)
T ss_pred CEEEEEcCCc---HHHHHHHHHHHH
Confidence 4689999988 777777777754
No 120
>PRK05693 short chain dehydrogenase; Provisional
Probab=35.38 E-value=38 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.+.|..
T Consensus 2 k~vlItGasg---giG~~la~~l~~ 23 (274)
T PRK05693 2 PVVLITGCSS---GIGRALADAFKA 23 (274)
T ss_pred CEEEEecCCC---hHHHHHHHHHHH
Confidence 5689999987 888888877754
No 121
>PLN02405 hexokinase
Probab=34.81 E-value=37 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=35.9
Q ss_pred eEEecCCC-CCccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhcccc
Q psy8375 26 IVITGGCC-GFAGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMSLDP 79 (105)
Q Consensus 26 Ivl~GG~s-~~~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a~l~ 79 (105)
|=+-||.= ..|+|.+++++-|+++++.. .+|.+....| .+=+||+++|...
T Consensus 436 VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~D---GSGvGAAl~AA~~ 489 (497)
T PLN02405 436 IAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSND---GSGIGAALLAASH 489 (497)
T ss_pred EEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecC---chHHHHHHHHHHH
Confidence 44444433 38999999999999998643 3566666655 4677999887653
No 122
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=34.72 E-value=86 Score=26.52 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=44.6
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC-CCCcccceehhhhhcccccccccceeHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP-SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEE 94 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~-~~~~~~aW~G~s~~a~l~~~~~~~itk~ey~e~ 94 (105)
.++++|-+. +.-|...|+....|..+.|.|+.. +.+.|.--.=.++++.-.++.+.|+.+.||.|.
T Consensus 5 klvvvGnGm----ag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~ 71 (793)
T COG1251 5 KLVIIGNGM----AGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEE 71 (793)
T ss_pred eEEEEeccc----chhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHH
Confidence 467776444 557888888888888889998764 333333222235566656788888888887654
No 123
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=34.71 E-value=29 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+|+||.++=+-+.++|.+.|..
T Consensus 660 ~~VvLSGGVfqN~~L~~~L~~~L~~ 684 (711)
T TIGR00143 660 HKIVISGGVFYNRLLLERLAKYLKG 684 (711)
T ss_pred CeEEEeccHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999888854
No 124
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=34.58 E-value=39 Score=25.49 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=25.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~ 61 (105)
+-|+++||-+.-+-+.+++.+.+..+.| |.|+.-
T Consensus 295 D~IV~gGGI~e~~~l~~~I~~~l~~~a~----v~~~pg 328 (351)
T TIGR02707 295 DAIVLTGGLAYSKYFVSEIIKRVSFIAP----VLVYPG 328 (351)
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhhCC----EEEeCC
Confidence 3489999999877777888888877654 666644
No 125
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.41 E-value=46 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=16.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
++++++||++ |+..-+.+.|.+.
T Consensus 1 k~~lItGa~~---giG~~~a~~l~~~ 23 (167)
T PF00106_consen 1 KTVLITGASS---GIGRALARALARR 23 (167)
T ss_dssp EEEEEETTTS---HHHHHHHHHHHHT
T ss_pred CEEEEECCCC---HHHHHHHHHHHhc
Confidence 3578888886 7777777666554
No 126
>PRK06953 short chain dehydrogenase; Provisional
Probab=34.05 E-value=43 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.++|.+
T Consensus 2 ~~vlvtG~sg---~iG~~la~~L~~ 23 (222)
T PRK06953 2 KTVLIVGASR---GIGREFVRQYRA 23 (222)
T ss_pred ceEEEEcCCC---chhHHHHHHHHh
Confidence 5689999987 667777766653
No 127
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=33.76 E-value=41 Score=22.94 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
++|++|||++ |+...+..+|.
T Consensus 6 ~~ilITGas~---GiG~aia~~l~ 26 (251)
T COG1028 6 KVALVTGASS---GIGRAIARALA 26 (251)
T ss_pred CEEEEeCCCC---HHHHHHHHHHH
Confidence 4699999999 99999998887
No 128
>PRK06101 short chain dehydrogenase; Provisional
Probab=33.72 E-value=41 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=17.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.++|..
T Consensus 2 ~~vlItGas~---giG~~la~~L~~ 23 (240)
T PRK06101 2 TAVLITGATS---GIGKQLALDYAK 23 (240)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHh
Confidence 5689999987 777777777754
No 129
>PRK08267 short chain dehydrogenase; Provisional
Probab=33.37 E-value=43 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.+.|.+
T Consensus 2 k~vlItGasg---~iG~~la~~l~~ 23 (260)
T PRK08267 2 KSIFITGAAS---GIGRATALLFAA 23 (260)
T ss_pred cEEEEeCCCc---hHHHHHHHHHHH
Confidence 5689999997 777777777754
No 130
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=33.13 E-value=50 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=15.7
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+|+++||+. ++...|.++|..
T Consensus 1 ~ilItGatG---~iG~~l~~~l~~ 21 (317)
T TIGR01181 1 RILVTGGAG---FIGSNFVRYILN 21 (317)
T ss_pred CEEEEcCCc---hHHHHHHHHHHH
Confidence 589999998 566666666654
No 131
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=33.10 E-value=40 Score=26.44 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKL 74 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~ 74 (105)
+.|+++||.|+-+=+.+-+.+-+ ...|..+......++-|+..
T Consensus 403 ~~i~~~GGgars~~w~Qi~Ad~~--------g~~v~~~~~~e~~a~g~A~~ 445 (502)
T COG1070 403 SRVRVVGGGARSPLWLQILADAL--------GLPVVVPEVEEAGALGGAAL 445 (502)
T ss_pred cEEEEECCcccCHHHHHHHHHHc--------CCeeEecCcccchHHHHHHH
Confidence 46999999998876666555544 45555554445555555544
No 132
>PRK07825 short chain dehydrogenase; Provisional
Probab=33.07 E-value=46 Score=23.16 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+|++|||++ |+...+.++|..
T Consensus 6 ~~ilVtGasg---giG~~la~~l~~ 27 (273)
T PRK07825 6 KVVAITGGAR---GIGLATARALAA 27 (273)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3699999987 788888877754
No 133
>PRK05854 short chain dehydrogenase; Provisional
Probab=33.06 E-value=43 Score=24.23 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=15.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+..-+.++|..
T Consensus 15 k~~lITGas~---GIG~~~a~~La~ 36 (313)
T PRK05854 15 KRAVVTGASD---GLGLGLARRLAA 36 (313)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 3489999987 777666666653
No 134
>PRK07578 short chain dehydrogenase; Provisional
Probab=32.90 E-value=49 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.4
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+++++||++ |+...+.+.|.+.
T Consensus 2 ~vlItGas~---giG~~la~~l~~~ 23 (199)
T PRK07578 2 KILVIGASG---TIGRAVVAELSKR 23 (199)
T ss_pred eEEEEcCCc---HHHHHHHHHHHhc
Confidence 689999987 7888777777654
No 135
>PRK14626 hypothetical protein; Provisional
Probab=32.87 E-value=26 Score=22.07 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=16.1
Q ss_pred HHHHHHcCCcchHHHhhcCeEEecCCCCCccHH
Q psy8375 7 IVDVIRSCPMEAQPHLYENIVITGGCCGFAGIR 39 (105)
Q Consensus 7 I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~ 39 (105)
+-+++.+........+ +.+ +||...+|||.
T Consensus 78 ~N~A~~k~~~~~~e~m-~~~--tg~p~~~p~~~ 107 (110)
T PRK14626 78 FNEASRRSKEVMGEKM-TQA--AGLPSNISKFG 107 (110)
T ss_pred HHHHHHHHHHHHHHHH-HHH--hCCCCCCCCCC
Confidence 3334444444333333 433 58878889874
No 136
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=32.77 E-value=83 Score=21.86 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.3
Q ss_pred cccccccceeHHHHHhh
Q psy8375 78 DPEFYSFVVTKEEYEEE 94 (105)
Q Consensus 78 l~~~~~~~itk~ey~e~ 94 (105)
++.|...|++.++|.+.
T Consensus 129 ~D~f~~~~~~~~~~~~~ 145 (192)
T cd08584 129 IDSFTSLWLDNDLILKL 145 (192)
T ss_pred EecccccCCCHHHHHHH
Confidence 47788999999999875
No 137
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.08 E-value=17 Score=23.94 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=14.8
Q ss_pred hcCeEEecCCCCCccHH
Q psy8375 23 YENIVITGGCCGFAGIR 39 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~ 39 (105)
-+.++++||+..+.||.
T Consensus 107 ~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 107 PSPLVIVGGNCSIQGFD 123 (136)
T ss_pred CCcEEEECceEEEEEeC
Confidence 36799999999999986
No 138
>KOG2960|consensus
Probab=31.89 E-value=27 Score=25.37 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=29.4
Q ss_pred HHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC-CCCcccceehhhhhccc
Q psy8375 20 PHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP-SNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 20 ~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~-~~~~~~aW~G~s~~a~l 78 (105)
+..-+.|+++|.+| .|+... .++....| +.+|.++.. --|.-.+|+||.+|+.+
T Consensus 73 kyAesDvviVGAGS--aGLsAA--Y~I~~~rP-dlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 73 KYAESDVVIVGAGS--AGLSAA--YVIAKNRP-DLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred hhhccceEEECCCc--ccccee--eeeeccCC-CceEEEEEeeecCCCcccccchhhhhh
Confidence 33344577777666 244322 11222222 234444432 24667899999999876
No 139
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=31.64 E-value=51 Score=24.10 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.7
Q ss_pred HHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 11 IRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 11 i~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+.+++..+++.-.++++++.|....+++.+++.+.|...
T Consensus 11 l~~l~~~~~~~g~~~~liv~~~~~~~~~~~~v~~~l~~~ 49 (332)
T cd07766 11 IEKIGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKKL 49 (332)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCchhhhHHHHHHHHHHhc
Confidence 344444444433367777777777779999999998764
No 140
>PLN02362 hexokinase
Probab=31.42 E-value=59 Score=26.00 Aligned_cols=50 Identities=12% Similarity=0.269 Sum_probs=35.6
Q ss_pred eEEecCCC-CCccHHHHHHHHHhhhCCCC--ceeEEeCCCCCcccceehhhhhccc
Q psy8375 26 IVITGGCC-GFAGIRDRVESDVRTLAPDE--FDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 26 Ivl~GG~s-~~~g~~~Rl~~el~~~~p~~--~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
|-+-||.- ..|+|.+++++-|+++++.. .+|.+....| .+=+||+++|..
T Consensus 445 VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~D---GSgvGAAl~AA~ 497 (509)
T PLN02362 445 VAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATED---GSGIGSALLAAS 497 (509)
T ss_pred EEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccC---chHHHHHHHHHH
Confidence 44444443 38999999999999998543 3566665655 467799998875
No 141
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=30.82 E-value=47 Score=19.89 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCcchHHHhh
Q psy8375 4 SECIVDVIRSCPMEAQPHLY 23 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~l~ 23 (105)
.++|.+.|.++|++.+..|.
T Consensus 25 ~~~~ee~I~~a~~~~q~rL~ 44 (83)
T PF11333_consen 25 QELIEEMIESAPEEMQPRLR 44 (83)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 46788888888888887765
No 142
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=30.73 E-value=55 Score=16.63 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHcCCc
Q psy8375 1 MGVSECIVDVIRSCPM 16 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~ 16 (105)
+|+-+.|.+.|.+|+.
T Consensus 22 ~gm~~~V~~~ir~C~~ 37 (39)
T PF09337_consen 22 PGMKKDVRRVIRSCPQ 37 (39)
T ss_pred cCHHHHHHHHHhcCcc
Confidence 4778888888888864
No 143
>PRK09291 short chain dehydrogenase; Provisional
Probab=30.70 E-value=49 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|++|||++ |+...+.+.|.+
T Consensus 3 ~~vlVtGasg---~iG~~ia~~l~~ 24 (257)
T PRK09291 3 KTILITGAGS---GFGREVALRLAR 24 (257)
T ss_pred CEEEEeCCCC---HHHHHHHHHHHH
Confidence 4689999988 777777777654
No 144
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=30.58 E-value=22 Score=20.02 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 7 IVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 7 I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
...+|.++|.++... +. +...+||+...+.+.+.++
T Consensus 31 Aa~~i~~l~~~i~~~--~~-----~~~~l~gIG~~ia~kI~E~ 66 (68)
T PF14716_consen 31 AAAAIKALPYPITSG--EE-----DLKKLPGIGKSIAKKIDEI 66 (68)
T ss_dssp HHHHHHHSSS-HHSH--HH-----HHCTSTTTTHHHHHHHHHH
T ss_pred HHHHHHhCCHhHhhH--HH-----HHhhCCCCCHHHHHHHHHH
Confidence 346777788776542 22 3478999999888877654
No 145
>PRK07023 short chain dehydrogenase; Provisional
Probab=30.50 E-value=53 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+++++||++ |+...+.+.|.+
T Consensus 2 ~~vlItGasg---giG~~ia~~l~~ 23 (243)
T PRK07023 2 VRAIVTGHSR---GLGAALAEQLLQ 23 (243)
T ss_pred ceEEEecCCc---chHHHHHHHHHh
Confidence 3799999988 777777777754
No 146
>PRK06179 short chain dehydrogenase; Provisional
Probab=30.14 E-value=56 Score=22.65 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.1
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+|++|||++ |+...+.++|.+.
T Consensus 6 ~vlVtGasg---~iG~~~a~~l~~~ 27 (270)
T PRK06179 6 VALVTGASS---GIGRATAEKLARA 27 (270)
T ss_pred EEEEecCCC---HHHHHHHHHHHHC
Confidence 599999987 7777777777653
No 147
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=29.66 E-value=31 Score=18.69 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=11.9
Q ss_pred HhhcCeEEecCCCCC
Q psy8375 21 HLYENIVITGGCCGF 35 (105)
Q Consensus 21 ~l~~nIvl~GG~s~~ 35 (105)
+=|.|.+|.||.+..
T Consensus 7 dKYGn~~l~~Ga~Fc 21 (51)
T cd01403 7 DKYGNAVLISGATFC 21 (51)
T ss_pred hhcCceEEecccchh
Confidence 458999999998843
No 148
>PRK08251 short chain dehydrogenase; Provisional
Probab=29.40 E-value=60 Score=22.09 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=16.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.+.|.+
T Consensus 3 k~vlItGas~---giG~~la~~l~~ 24 (248)
T PRK08251 3 QKILITGASS---GLGAGMAREFAA 24 (248)
T ss_pred CEEEEECCCC---HHHHHHHHHHHH
Confidence 3588999887 777777777654
No 149
>PRK12937 short chain dehydrogenase; Provisional
Probab=28.88 E-value=62 Score=21.88 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|.+
T Consensus 6 ~~vlItG~~~---~iG~~la~~l~~ 27 (245)
T PRK12937 6 KVAIVTGASR---GIGAAIARRLAA 27 (245)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3588999886 777777766654
No 150
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=28.81 E-value=30 Score=22.05 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=26.1
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhhhC---CCCceeEE-eCCCCCcccceeh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRTLA---PDEFDVNV-VLPSNPMTYAWEG 71 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~~~---p~~~~v~v-~~~~~~~~~aW~G 71 (105)
|+|++|++|++.+..+-.-|..=+.... +....|++ ....+.....|..
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~ 53 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFS 53 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHH
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhh
Confidence 6788888888877765555543333322 11223443 3444555666776
No 151
>PRK14625 hypothetical protein; Provisional
Probab=28.63 E-value=27 Score=22.03 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=15.5
Q ss_pred HHHHHHcCCcchHHHhhcCeEEecCCCC-CccHH
Q psy8375 7 IVDVIRSCPMEAQPHLYENIVITGGCCG-FAGIR 39 (105)
Q Consensus 7 I~~si~~~~~d~r~~l~~nIvl~GG~s~-~~g~~ 39 (105)
+-+++.+........+-+ ++||-.. +|||.
T Consensus 75 ~NdA~~k~~~~~~~~m~~---~tgg~~~~lPG~~ 105 (109)
T PRK14625 75 HADAKKKLDAKQAQLMQE---AAGPMAGLMGGLP 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHH---HhcCCCCCCCCCC
Confidence 333444444433344433 6788753 77764
No 152
>PRK06482 short chain dehydrogenase; Provisional
Probab=28.39 E-value=62 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.++|.+
T Consensus 3 k~vlVtGasg---~IG~~la~~L~~ 24 (276)
T PRK06482 3 KTWFITGASS---GFGRGMTERLLA 24 (276)
T ss_pred CEEEEecCCC---HHHHHHHHHHHH
Confidence 4689999987 777777777754
No 153
>PRK07102 short chain dehydrogenase; Provisional
Probab=28.37 E-value=58 Score=22.16 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.++|.+
T Consensus 2 ~~vlItGas~---giG~~~a~~l~~ 23 (243)
T PRK07102 2 KKILIIGATS---DIARACARRYAA 23 (243)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHh
Confidence 4688999887 667666666654
No 154
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.37 E-value=71 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEE
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNV 58 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v 58 (105)
.|+++++..+ ...+.+||+.-+....+-...+-|
T Consensus 43 GNlvf~s~~~-~~el~~klE~afe~~fg~~~dilV 76 (178)
T COG3797 43 GNLVFESEAG-AAELEAKLEAAFEKRFGRHVDILV 76 (178)
T ss_pred CCEEEEcCCC-hHHHHHHHHHHHHHHcCCCccEEE
Confidence 3799999998 999999999999887665444444
No 155
>PRK12742 oxidoreductase; Provisional
Probab=28.29 E-value=66 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=16.1
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ |+...+.+.|.+
T Consensus 7 k~vlItGasg---gIG~~~a~~l~~ 28 (237)
T PRK12742 7 KKVLVLGGSR---GIGAAIVRRFVT 28 (237)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 4689999988 667767666654
No 156
>PHA01159 hypothetical protein
Probab=27.98 E-value=68 Score=20.48 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHcCCcchHHHhhc
Q psy8375 1 MGVSECIVDVIRSCPMEAQPHLYE 24 (105)
Q Consensus 1 ~gi~~~I~~si~~~~~d~r~~l~~ 24 (105)
.|+.++|......+|.|+|--+..
T Consensus 66 iG~~s~i~s~fnaLPseiR~~l~~ 89 (114)
T PHA01159 66 YGVYTMVESRFNALPSDIRYILTE 89 (114)
T ss_pred cCHHHHHHHHHHhCCHHHHHHHHH
Confidence 388999999999999999976543
No 157
>KOG0103|consensus
Probab=27.79 E-value=59 Score=27.11 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCcchHHHhhc---------CeEEecCCCCCccHHHHHHHHH
Q psy8375 5 ECIVDVIRSCPMEAQPHLYE---------NIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~---------nIvl~GG~s~~~g~~~Rl~~el 46 (105)
+++..-+.++.+.+.+.|.+ -|=++||+|.+|-+++.|.+-.
T Consensus 307 el~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F 357 (727)
T KOG0103|consen 307 ELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF 357 (727)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh
Confidence 34444455554444444444 4679999999999998887643
No 158
>PRK06194 hypothetical protein; Provisional
Probab=27.68 E-value=61 Score=22.68 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=15.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.++|.+
T Consensus 7 k~vlVtGasg---gIG~~la~~l~~ 28 (287)
T PRK06194 7 KVAVITGAAS---GFGLAFARIGAA 28 (287)
T ss_pred CEEEEeCCcc---HHHHHHHHHHHH
Confidence 4589999997 666666666544
No 159
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.62 E-value=65 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=16.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ ++...|.+.|.+
T Consensus 7 ~~vlItGasg---~iG~~l~~~l~~ 28 (249)
T PRK12825 7 RVALVTGAAR---GLGRAIALRLAR 28 (249)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4699999987 677777777654
No 160
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=27.61 E-value=69 Score=21.62 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.5
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+++++||++ |+...+.+.|.+.
T Consensus 2 ~vlItGas~---gIG~~ia~~l~~~ 23 (235)
T PRK09009 2 NILIVGGSG---GIGKAMVKQLLER 23 (235)
T ss_pred EEEEECCCC---hHHHHHHHHHHHh
Confidence 689999999 7777777777654
No 161
>KOG1794|consensus
Probab=27.57 E-value=1.3e+02 Score=22.79 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCcchHHHhhcCeEEecCCCC-CccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhcc
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCG-FAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSL 77 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~-~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~ 77 (105)
|...|..++.++|++.++---=.|+++||.-. -..+.+-+..+|+... -..+++.+.+ ..++-.||+++|.
T Consensus 244 Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~-~f~~~~l~~~---k~ssAvgAA~laa 315 (336)
T KOG1794|consen 244 LGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTR-GFERVELYRP---KESSAVGAAILAA 315 (336)
T ss_pred HHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhccc-CccceEEEee---cccchHHHHHHhh
Confidence 45678888899998887643335999998643 3445555556665420 0113555554 3456778888775
No 162
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=27.52 E-value=77 Score=22.84 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=26.8
Q ss_pred eEEec-CCCCC-ccHHHHHHHHHhhhCCC-CceeEEeCCCCC-cccceehhhhhcc
Q psy8375 26 IVITG-GCCGF-AGIRDRVESDVRTLAPD-EFDVNVVLPSNP-MTYAWEGGKLMSL 77 (105)
Q Consensus 26 Ivl~G-G~s~~-~g~~~Rl~~el~~~~p~-~~~v~v~~~~~~-~~~aW~G~s~~a~ 77 (105)
|++.| |.+.. +.|.+++.+.+...... .....+....-. ..+...|+..++.
T Consensus 251 IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~ 306 (314)
T COG1940 251 IVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALLAL 306 (314)
T ss_pred EEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHHHH
Confidence 66666 55544 66777777777665443 111222222111 3455667666554
No 163
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.36 E-value=86 Score=21.55 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCcch--HHHhhcCeEEecCCCCCccHHHHHHHHHhhhC
Q psy8375 5 ECIVDVIRSCPMEA--QPHLYENIVITGGCCGFAGIRDRVESDVRTLA 50 (105)
Q Consensus 5 ~~I~~si~~~~~d~--r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~ 50 (105)
+.+..++.+...++ |..-.+|++|.|=-+.=--+.+||+..|.++-
T Consensus 10 ~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~E 57 (179)
T COG2065 10 AAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELE 57 (179)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHh
Confidence 34555666554443 34467899999877765558999999998874
No 164
>PRK08264 short chain dehydrogenase; Validated
Probab=27.28 E-value=69 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=17.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+.|+++||++ |+...+.+.|.+.
T Consensus 7 ~~vlItGgsg---~iG~~la~~l~~~ 29 (238)
T PRK08264 7 KVVLVTGANR---GIGRAFVEQLLAR 29 (238)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHC
Confidence 3599999988 7777777777654
No 165
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=27.27 E-value=64 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=18.5
Q ss_pred hHHHhh---cC-eEEecCCCCCccHHHHHHHHH
Q psy8375 18 AQPHLY---EN-IVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 18 ~r~~l~---~n-Ivl~GG~s~~~g~~~Rl~~el 46 (105)
...+|. ++ |+||| ...|+++|+.+.+
T Consensus 95 ~a~eLa~~~~~liliCG---rYEGiDeRv~~~~ 124 (222)
T PRK14599 95 IARELKESGKPLTFISG---YYEGVDHRVTEHL 124 (222)
T ss_pred HHHHHHhCCCCEEEEec---cccCcHHHHHhhh
Confidence 345566 35 66777 8899999998744
No 166
>KOG1369|consensus
Probab=27.26 E-value=67 Score=25.54 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=38.3
Q ss_pred eEEecCCCC--CccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccccc
Q psy8375 26 IVITGGCCG--FAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPE 80 (105)
Q Consensus 26 Ivl~GG~s~--~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l~~ 80 (105)
+|-++|+-. -|.|.+.+..-|++++.....|.+...+| .+=.||+++|.+..
T Consensus 415 ~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~d---gSg~GAAL~Aav~~ 468 (474)
T KOG1369|consen 415 TVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSED---GSGRGAALIAAVAS 468 (474)
T ss_pred EEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCC---CccccHHHHHHHHh
Confidence 445555543 79999999999999997556777777765 46678998877643
No 167
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=27.21 E-value=72 Score=18.31 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCC-CCcccceeh
Q psy8375 14 CPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPS-NPMTYAWEG 71 (105)
Q Consensus 14 ~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~-~~~~~aW~G 71 (105)
|++++++.|.+||-= ....-.++.|++.++...+.. ..|+... +=.+.++..
T Consensus 7 n~~~L~~ii~~~~~~----~~~~~s~~~Iq~~~e~~f~~~--f~vIcs~~~Fsy~~~~~ 59 (76)
T PF04155_consen 7 NSEELRKIILKNMKE----CNLSISKRAIQKAAEKRFGGS--FEVICSEGDFSYSTHTD 59 (76)
T ss_pred CCHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHhCCC--EEEEEeCCCceeEEecc
Confidence 467788877777643 455678899999999988874 4444433 223444444
No 168
>PRK07904 short chain dehydrogenase; Provisional
Probab=27.20 E-value=67 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=16.4
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+|++|||++ |+..-+.++|.+.
T Consensus 10 ~vlItGas~---giG~~la~~l~~~ 31 (253)
T PRK07904 10 TILLLGGTS---EIGLAICERYLKN 31 (253)
T ss_pred EEEEEcCCc---HHHHHHHHHHHhc
Confidence 488999987 7777777776543
No 169
>PRK07806 short chain dehydrogenase; Provisional
Probab=26.85 E-value=74 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|..
T Consensus 7 k~vlItGasg---giG~~l~~~l~~ 28 (248)
T PRK07806 7 KTALVTGSSR---GIGADTAKILAG 28 (248)
T ss_pred cEEEEECCCC---cHHHHHHHHHHH
Confidence 3588999887 778888777754
No 170
>PF05295 Luciferase_N: Luciferase/LBP N-terminal domain; InterPro: IPR007959 Proteins in this entry belong to a family of dinoflagellate luciferase and luciferin binding proteins. Luciferase is involved in catalysing the light emitting reaction in bioluminescence and luciferin binding protein (LBP) is known to bind to luciferin (the substrate for luciferase) to stop it reacting with the enzyme and therefore switching off the bioluminescence function. The expression of these two proteins is controlled by a circadian clock at the translational level, with synthesis and degradation occurring on a daily basis []. This entry consists of a presumed N-terminal domain that is conserved between dinoflagellate luciferase and luciferin binding proteins. This domain is not, however, the catalytic part of the protein. It has been suggested that this region may mediate an interaction between LBP and Luciferase or their association with the vacuolar membrane []. More information about these proteins can be found at Protein of the Month: Luciferase [].
Probab=26.83 E-value=18 Score=21.48 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.0
Q ss_pred hcccccccccceeHHHHHhh
Q psy8375 75 MSLDPEFYSFVVTKEEYEEE 94 (105)
Q Consensus 75 ~a~l~~~~~~~itk~ey~e~ 94 (105)
+.+...|.+.| |..|||..
T Consensus 29 lesvsDFAn~W-Ts~eyE~G 47 (82)
T PF05295_consen 29 LESVSDFANYW-TSAEYEKG 47 (82)
T ss_pred hhhHHHHHhhh-hHHHHHhh
Confidence 55667788889 77888653
No 171
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=26.70 E-value=61 Score=23.57 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=16.4
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+|++|||+. .+...|.++|.+
T Consensus 2 ~~vlVtGatG---fIG~~l~~~L~~ 23 (355)
T PRK10217 2 RKILITGGAG---FIGSALVRYIIN 23 (355)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHH
Confidence 5799999988 566667777754
No 172
>PRK12827 short chain dehydrogenase; Provisional
Probab=26.69 E-value=72 Score=21.50 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=15.9
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+|+++||++ |+...+.++|.+
T Consensus 8 ~ilItGasg---~iG~~la~~l~~ 28 (249)
T PRK12827 8 RVLITGGSG---GLGRAIAVRLAA 28 (249)
T ss_pred EEEEECCCC---hHHHHHHHHHHH
Confidence 589999987 667777777764
No 173
>PRK05876 short chain dehydrogenase; Provisional
Probab=26.67 E-value=68 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=14.9
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++|||++ |+...+..+|..
T Consensus 8 ~vlVTGas~---gIG~ala~~La~ 28 (275)
T PRK05876 8 GAVITGGAS---GIGLATGTEFAR 28 (275)
T ss_pred EEEEeCCCc---hHHHHHHHHHHH
Confidence 489999987 666666666644
No 174
>KOG4058|consensus
Probab=26.64 E-value=28 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=22.2
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
|+|+++-|--|++|-+...|..|+..
T Consensus 139 y~~vviFgaes~m~dLe~KL~~E~p~ 164 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPDLEDKLRTELPA 164 (199)
T ss_pred cceEEEeehHHHHhhhHHHHHhhCcC
Confidence 57899999999999999888888743
No 175
>PRK06182 short chain dehydrogenase; Validated
Probab=26.59 E-value=72 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|++|||++ |+...+.++|.+
T Consensus 4 k~vlItGasg---giG~~la~~l~~ 25 (273)
T PRK06182 4 KVALVTGASS---GIGKATARRLAA 25 (273)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 4589999987 777777777754
No 176
>PRK08628 short chain dehydrogenase; Provisional
Probab=26.56 E-value=72 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.1
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.++|.+
T Consensus 9 ~ilItGasg---giG~~la~~l~~ 29 (258)
T PRK08628 9 VVIVTGGAS---GIGAAISLRLAE 29 (258)
T ss_pred EEEEeCCCC---hHHHHHHHHHHH
Confidence 588999886 777777777754
No 177
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=26.47 E-value=30 Score=11.64 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=2.7
Q ss_pred Ccccce
Q psy8375 64 PMTYAW 69 (105)
Q Consensus 64 ~~~~aW 69 (105)
|.+.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 344444
No 178
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=26.03 E-value=56 Score=24.59 Aligned_cols=28 Identities=36% Similarity=0.448 Sum_probs=23.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAP 51 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p 51 (105)
.-|+||||.+.=.-|..++.+.+.-+.|
T Consensus 298 DaIvLTGGiA~~~~f~~~I~~~v~~iap 325 (358)
T COG3426 298 DAIVLTGGIAYEKLFVDAIEDRVSWIAP 325 (358)
T ss_pred CEEEEecchhhHHHHHHHHHHHHhhhcc
Confidence 4599999999999999999988876665
No 179
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.97 E-value=78 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ |+...+.++|.+
T Consensus 4 k~vlItG~s~---~iG~~ia~~l~~ 25 (234)
T PRK07577 4 RTVLVTGATK---GIGLALSLRLAN 25 (234)
T ss_pred CEEEEECCCC---cHHHHHHHHHHH
Confidence 3689999998 788888777764
No 180
>PRK00153 hypothetical protein; Validated
Probab=25.78 E-value=39 Score=20.81 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=6.6
Q ss_pred EecCCCCCccH
Q psy8375 28 ITGGCCGFAGI 38 (105)
Q Consensus 28 l~GG~s~~~g~ 38 (105)
++||- .+|||
T Consensus 94 ~~gg~-~~pgl 103 (104)
T PRK00153 94 LTGGL-LPPGF 103 (104)
T ss_pred HhCCC-CCCCC
Confidence 45665 67886
No 181
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.73 E-value=9.7 Score=21.54 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=13.4
Q ss_pred EeCCCCCcccceehhhhhc
Q psy8375 58 VVLPSNPMTYAWEGGKLMS 76 (105)
Q Consensus 58 v~~~~~~~~~aW~G~s~~a 76 (105)
+..+..|.-.+|+|+-+.-
T Consensus 31 ~k~~~~~L~lswKGalkel 49 (65)
T COG5559 31 AKKKQKPLKLSWKGALKEL 49 (65)
T ss_pred hcCcCCCcceehhhhhhhh
Confidence 3445567788999987654
No 182
>PRK13373 putative dioxygenase; Provisional
Probab=25.72 E-value=71 Score=24.32 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccH
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGI 38 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~ 38 (105)
+-++|.++|.+.|.|.|- -|+-|||.|..|++
T Consensus 165 lG~ai~~ai~~~~~d~rV----~~~~sGgLSH~p~~ 196 (344)
T PRK13373 165 FGAALRNAAEALDADLRV----AFMATGGMSHWPPF 196 (344)
T ss_pred HHHHHHHHHHhcCCCceE----EEEecCcccCCCcc
Confidence 456788888888777653 36789999998765
No 183
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.69 E-value=76 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+|+++||++ ++...+.+.|.+
T Consensus 6 ~~ilItGasg---~iG~~l~~~l~~ 27 (246)
T PRK05653 6 KTALVTGASR---GIGRAIALRLAA 27 (246)
T ss_pred CEEEEECCCc---HHHHHHHHHHHH
Confidence 4699999976 777777777754
No 184
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=25.54 E-value=77 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|++|||++ |+..-+.++|.+
T Consensus 6 k~vlItGas~---gIG~~ia~~l~~ 27 (248)
T TIGR01832 6 KVALVTGANT---GLGQGIAVGLAE 27 (248)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4589999987 667666666654
No 185
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.49 E-value=76 Score=22.89 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=18.8
Q ss_pred HHHhhcC---eEEecCCCCCccHHHHHHHHH
Q psy8375 19 QPHLYEN---IVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 19 r~~l~~n---Ivl~GG~s~~~g~~~Rl~~el 46 (105)
.++|.++ |++|| ..-|+++|+....
T Consensus 97 a~eLa~~~~lv~iCG---rYEGiDeRvi~~~ 124 (240)
T COG0336 97 ARELAKEEHLVLICG---RYEGIDERVIELY 124 (240)
T ss_pred HHHHhcCCCEEEEec---cccchhHHHHhhc
Confidence 3456654 88888 7889999999643
No 186
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.42 E-value=54 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=18.9
Q ss_pred ecCCCCCccHHHHHHHHHhhhCCCC
Q psy8375 29 TGGCCGFAGIRDRVESDVRTLAPDE 53 (105)
Q Consensus 29 ~GG~s~~~g~~~Rl~~el~~~~p~~ 53 (105)
|||.| |.+..+|.++|...+|..
T Consensus 125 T~G~s--P~la~~lr~~ie~~l~~~ 147 (157)
T PRK06719 125 TSGKD--PSFTKRLKQELTSILPKL 147 (157)
T ss_pred CCCcC--hHHHHHHHHHHHHHhhHH
Confidence 66765 899999999999888853
No 187
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=25.38 E-value=1.4e+02 Score=16.87 Aligned_cols=30 Identities=23% Similarity=0.597 Sum_probs=22.0
Q ss_pred eEEecCCCCCcc----HHHHHHHHHhhhCCCCce
Q psy8375 26 IVITGGCCGFAG----IRDRVESDVRTLAPDEFD 55 (105)
Q Consensus 26 Ivl~GG~s~~~g----~~~Rl~~el~~~~p~~~~ 55 (105)
|-|.|+++..|. +...+++.|++.+|....
T Consensus 31 V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~ 64 (68)
T PF01106_consen 31 VRLTGACSGCPSSDMTLKQGIEQALREAVPEVKR 64 (68)
T ss_dssp EEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCce
Confidence 557888887755 667888999988886443
No 188
>KOG0258|consensus
Probab=25.37 E-value=1.4e+02 Score=23.61 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccc---eehhhhhc
Q psy8375 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYA---WEGGKLMS 76 (105)
Q Consensus 2 gi~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~a---W~G~s~~a 76 (105)
||-+.|.+-|.+-|- -..=.++|+||+|.| ++...-|.-=++. ....|-|-.|..|.|+| -.||+.+.
T Consensus 117 ~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS--~ai~~il~l~~~~---~~~GvliPiPQYPLYsAti~l~~~~~v~ 187 (475)
T KOG0258|consen 117 GVRKHVAEFIERRDG--IPADPEDIFLTTGAS--PAIRSILSLLIAG---KKTGVLIPIPQYPLYSATISLLGGTQVP 187 (475)
T ss_pred hHHHHHHHHHHhccC--CCCCHHHeeecCCCc--HHHHHHHHHHhcC---CCCceEeecCCCchhHHHHHHhCCcccc
Confidence 455667777766554 122347899999999 4544443322222 22234444555676654 34555443
No 189
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.37 E-value=76 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|++|||++ |+...+.++|..
T Consensus 5 ~~vlVtGasg---giG~~la~~l~~ 26 (277)
T PRK06180 5 KTWLITGVSS---GFGRALAQAALA 26 (277)
T ss_pred CEEEEecCCC---hHHHHHHHHHHh
Confidence 4599999998 778877777754
No 190
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.29 E-value=64 Score=19.25 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=11.3
Q ss_pred CeEEecC-CCCCccHHHHHH
Q psy8375 25 NIVITGG-CCGFAGIRDRVE 43 (105)
Q Consensus 25 nIvl~GG-~s~~~g~~~Rl~ 43 (105)
.|+++|| ..+...+.+.++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~ 20 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILE 20 (97)
T ss_pred CEEEEcCCcccHHHHHHHHH
Confidence 4789998 444444444444
No 191
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=25.20 E-value=77 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.+.|.+
T Consensus 7 ~~~lItG~s~---~iG~~la~~l~~ 28 (247)
T PRK12935 7 KVAIVTGGAK---GIGKAITVALAQ 28 (247)
T ss_pred CEEEEECCCC---HHHHHHHHHHHH
Confidence 4589999886 777777766654
No 192
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=25.09 E-value=27 Score=20.83 Aligned_cols=22 Identities=18% Similarity=0.694 Sum_probs=16.1
Q ss_pred cCeEEecCCCCCccHHHHHHHHH
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el 46 (105)
+++++.|++|.+ |+..|+..-.
T Consensus 40 K~VLViGaStGy-GLAsRIa~aF 61 (78)
T PF12242_consen 40 KKVLVIGASTGY-GLASRIAAAF 61 (78)
T ss_dssp SEEEEES-SSHH-HHHHHHHHHH
T ss_pred ceEEEEecCCcc-cHHHHHHHHh
Confidence 568888888865 6888888665
No 193
>PRK05866 short chain dehydrogenase; Provisional
Probab=25.04 E-value=76 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=15.9
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.|+++||++ |+...+.++|.+
T Consensus 42 ~vlItGasg---gIG~~la~~La~ 62 (293)
T PRK05866 42 RILLTGASS---GIGEAAAEQFAR 62 (293)
T ss_pred EEEEeCCCc---HHHHHHHHHHHH
Confidence 499999987 777777776654
No 194
>KOG0421|consensus
Probab=24.92 E-value=68 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhCCCCc-eeEEeCCCCCcccceeh
Q psy8375 38 IRDRVESDVRTLAPDEF-DVNVVLPSNPMTYAWEG 71 (105)
Q Consensus 38 ~~~Rl~~el~~~~p~~~-~v~v~~~~~~~~~aW~G 71 (105)
...||++||..+.-... .|..+...| ...-|.|
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~d-nlf~WvG 63 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESD-NLFKWVG 63 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcC-ceeEEee
Confidence 45799999998764322 233332222 4455665
No 195
>PRK08177 short chain dehydrogenase; Provisional
Probab=24.92 E-value=75 Score=21.41 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|..
T Consensus 2 k~vlItG~sg---~iG~~la~~l~~ 23 (225)
T PRK08177 2 RTALIIGASR---GLGLGLVDRLLE 23 (225)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHh
Confidence 4689999987 777777777754
No 196
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.71 E-value=1.2e+02 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=28.5
Q ss_pred hcCeEEecCCCCC--ccHHHHHHHHHhhhCCCCceeEEeCCCC
Q psy8375 23 YENIVITGGCCGF--AGIRDRVESDVRTLAPDEFDVNVVLPSN 63 (105)
Q Consensus 23 ~~nIvl~GG~s~~--~g~~~Rl~~el~~~~p~~~~v~v~~~~~ 63 (105)
.+.|++-||+..+ +..-++|.+.++...+....+.+...|+
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~ 99 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPE 99 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccC
Confidence 4678999998875 4556788888887766555666655443
No 197
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=24.51 E-value=61 Score=25.52 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=20.8
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++|+|+||.++=.-+.++|...++.
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~ 271 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEE 271 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 35799999999887788888876654
No 198
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=24.45 E-value=61 Score=18.26 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhh
Q psy8375 4 SECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK 73 (105)
Q Consensus 4 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s 73 (105)
.+.|.+-|.++|++.+.+++. |.+-|...- ..-.....+....|.|+-
T Consensus 2 ~~~l~~~i~~LP~~~~~Evld-------------fi~fL~~k~---------~~~~~~~~~~~~~~~G~l 49 (66)
T PF10047_consen 2 EEELLEKIQQLPEELQQEVLD-------------FIEFLLQKY---------QQKESKKKKLLGDWKGKL 49 (66)
T ss_pred hHHHHHHHHHCCHHHHHHHHH-------------HHHHHHHhc---------ccccccccccccccCCcc
Confidence 456777888888888887765 555554432 111222346778999983
No 199
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=24.36 E-value=85 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=16.6
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|.+
T Consensus 7 ~~vlItGa~g---~iG~~la~~l~~ 28 (245)
T PRK12936 7 RKALVTGASG---GIGEEIARLLHA 28 (245)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 3699999987 777777777754
No 200
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=24.10 E-value=37 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=8.3
Q ss_pred EEecCCCCCccH
Q psy8375 27 VITGGCCGFAGI 38 (105)
Q Consensus 27 vl~GG~s~~~g~ 38 (105)
.++||....|||
T Consensus 91 ~~t~gl~~~pGl 102 (102)
T TIGR00103 91 LMTSGMPLPPGL 102 (102)
T ss_pred HHhCCCCCCCCC
Confidence 677777644876
No 201
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.08 E-value=82 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+...+.+.|.+
T Consensus 15 k~~lITGas~---gIG~ala~~l~~ 36 (245)
T PRK12367 15 KRIGITGASG---ALGKALTKAFRA 36 (245)
T ss_pred CEEEEEcCCc---HHHHHHHHHHHH
Confidence 4599999998 888888877754
No 202
>PRK06483 dihydromonapterin reductase; Provisional
Probab=24.06 E-value=81 Score=21.32 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.++|.+
T Consensus 3 k~vlItGas~---gIG~~ia~~l~~ 24 (236)
T PRK06483 3 APILITGAGQ---RIGLALAWHLLA 24 (236)
T ss_pred ceEEEECCCC---hHHHHHHHHHHH
Confidence 4688999887 777777777754
No 203
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=23.55 E-value=71 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=18.9
Q ss_pred ecCCCCCccHHHHHHHHHhhhCCCC
Q psy8375 29 TGGCCGFAGIRDRVESDVRTLAPDE 53 (105)
Q Consensus 29 ~GG~s~~~g~~~Rl~~el~~~~p~~ 53 (105)
|||.| |.+..+|.++|...+|+.
T Consensus 125 T~G~s--P~la~~lr~~ie~~~~~~ 147 (202)
T PRK06718 125 TDGAS--PKLAKKIRDELEALYDES 147 (202)
T ss_pred CCCCC--hHHHHHHHHHHHHHcchh
Confidence 56665 899999999999988764
No 204
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=23.49 E-value=89 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.2
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.+.|.+
T Consensus 8 ~vlItGas~---~iG~~ia~~l~~ 28 (257)
T PRK07067 8 VALLTGAAS---GIGEAVAERYLA 28 (257)
T ss_pred EEEEeCCCc---hHHHHHHHHHHH
Confidence 589999887 777777777754
No 205
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=23.49 E-value=66 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=15.0
Q ss_pred eEEecCCCCCccHHHHHHHHH
Q psy8375 26 IVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 26 Ivl~GG~s~~~g~~~Rl~~el 46 (105)
|+||| ..-|+++|+.+.+
T Consensus 109 illCG---rYEGiDeRv~~~~ 126 (244)
T PRK00026 109 ILLCG---RYEGIDERVIEHY 126 (244)
T ss_pred EEEec---cccChHHHHHhhh
Confidence 77887 8899999998754
No 206
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.40 E-value=1.6e+02 Score=21.93 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=26.4
Q ss_pred hcCeEEecCCCCC--ccHHHHHHHHHhhhCCCCceeEEeCCC
Q psy8375 23 YENIVITGGCCGF--AGIRDRVESDVRTLAPDEFDVNVVLPS 62 (105)
Q Consensus 23 ~~nIvl~GG~s~~--~g~~~Rl~~el~~~~p~~~~v~v~~~~ 62 (105)
...|++.||+..+ +.--++|.+.++...+....+.+...|
T Consensus 52 v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP 93 (350)
T PRK08446 52 IESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANP 93 (350)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3568899998864 445678888887765544455555444
No 207
>PRK07832 short chain dehydrogenase; Provisional
Probab=23.36 E-value=89 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=15.3
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.++|.+
T Consensus 2 ~vlItGas~---giG~~la~~la~ 22 (272)
T PRK07832 2 RCFVTGAAS---GIGRATALRLAA 22 (272)
T ss_pred EEEEeCCCC---HHHHHHHHHHHH
Confidence 478899887 777777666654
No 208
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.31 E-value=91 Score=21.05 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.+.|.+
T Consensus 8 ~~vlItGa~g---~iG~~la~~l~~ 29 (250)
T PRK12939 8 KRALVTGAAR---GLGAAFAEALAE 29 (250)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 4589999887 777777776654
No 209
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=23.25 E-value=88 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++|||++ |+...+.++|..
T Consensus 7 k~vlVTGas~---gIG~~~a~~L~~ 28 (322)
T PRK07453 7 GTVIITGASS---GVGLYAAKALAK 28 (322)
T ss_pred CEEEEEcCCC---hHHHHHHHHHHH
Confidence 3599999987 666666666654
No 210
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.15 E-value=91 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=15.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ ++...+.+.|.+
T Consensus 5 ~~vlItG~sg---~iG~~la~~l~~ 26 (258)
T PRK12429 5 KVALVTGAAS---GIGLEIALALAK 26 (258)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3699999987 666666666654
No 211
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=23.10 E-value=1.5e+02 Score=22.47 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=29.1
Q ss_pred hcCeEEecCCCCC--ccHHHHHHHHHhhhCCCC--ceeEEeCCC
Q psy8375 23 YENIVITGGCCGF--AGIRDRVESDVRTLAPDE--FDVNVVLPS 62 (105)
Q Consensus 23 ~~nIvl~GG~s~~--~g~~~Rl~~el~~~~p~~--~~v~v~~~~ 62 (105)
.+.|++-||+..+ +..-.||...++..+|.. ..+.+...|
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p 117 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANP 117 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECC
Confidence 4679999999886 556688899998887643 356555544
No 212
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.09 E-value=89 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+...+.++|.+
T Consensus 5 k~vlItGasg---giG~~la~~l~~ 26 (277)
T PRK05993 5 RSILITGCSS---GIGAYCARALQS 26 (277)
T ss_pred CEEEEeCCCc---HHHHHHHHHHHH
Confidence 4689999987 788878777755
No 213
>PRK08219 short chain dehydrogenase; Provisional
Probab=22.87 E-value=92 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=15.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
++++++||+. ++...+.++|.+.
T Consensus 4 ~~vlVtG~~g---~iG~~l~~~l~~~ 26 (227)
T PRK08219 4 PTALITGASR---GIGAAIARELAPT 26 (227)
T ss_pred CEEEEecCCc---HHHHHHHHHHHhh
Confidence 4699999987 5566666666543
No 214
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.83 E-value=92 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.+.|.+
T Consensus 11 k~vlItGa~g---~iG~~ia~~l~~ 32 (255)
T PRK07523 11 RRALVTGSSQ---GIGYALAEGLAQ 32 (255)
T ss_pred CEEEEECCcc---hHHHHHHHHHHH
Confidence 4599999987 677777776654
No 215
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=22.74 E-value=88 Score=21.07 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=14.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
+.++++||++ |+...+.+.|.
T Consensus 2 ~~~lItGa~g---~iG~~l~~~l~ 22 (247)
T PRK09730 2 AIALVTGGSR---GIGRATALLLA 22 (247)
T ss_pred CEEEEeCCCc---hHHHHHHHHHH
Confidence 4688898876 56665555554
No 216
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.62 E-value=97 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=15.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.++|.+
T Consensus 7 k~~lItGas~---giG~~ia~~l~~ 28 (254)
T PRK07478 7 KVAIITGASS---GIGRAAAKLFAR 28 (254)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 3589999986 777777666654
No 217
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.58 E-value=95 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=14.8
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.+.|.+
T Consensus 7 ~vlItG~s~---~iG~~ia~~l~~ 27 (263)
T PRK09072 7 RVLLTGASG---GIGQALAEALAA 27 (263)
T ss_pred EEEEECCCc---hHHHHHHHHHHH
Confidence 489999988 666666665543
No 218
>PRK05872 short chain dehydrogenase; Provisional
Probab=22.52 E-value=93 Score=22.17 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|.+
T Consensus 10 k~vlItGas~---gIG~~ia~~l~~ 31 (296)
T PRK05872 10 KVVVVTGAAR---GIGAELARRLHA 31 (296)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3589999998 777777776654
No 219
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.43 E-value=94 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=16.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ |+...+.+.|.+
T Consensus 6 ~~ilI~Gasg---~iG~~la~~l~~ 27 (247)
T PRK05565 6 KVAIVTGASG---GIGRAIAELLAK 27 (247)
T ss_pred CEEEEeCCCc---HHHHHHHHHHHH
Confidence 3699999986 777777766653
No 220
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.29 E-value=96 Score=21.14 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=15.3
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.++|.+
T Consensus 10 ~vlItGas~---gIG~~l~~~l~~ 30 (252)
T PRK07035 10 IALVTGASR---GIGEAIAKLLAQ 30 (252)
T ss_pred EEEEECCCc---HHHHHHHHHHHH
Confidence 489999887 666666666654
No 221
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=22.26 E-value=93 Score=19.24 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCCCccH-HHHHHHHHhhhCCCCceeEEeCCCC--Cccccee--hhhhhcc
Q psy8375 32 CCGFAGI-RDRVESDVRTLAPDEFDVNVVLPSN--PMTYAWE--GGKLMSL 77 (105)
Q Consensus 32 ~s~~~g~-~~Rl~~el~~~~p~~~~v~v~~~~~--~~~~aW~--G~s~~a~ 77 (105)
.|-+|-| .+.+.++++.++...+.+.+--.++ +....|. ++-++..
T Consensus 5 ~S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~ 55 (99)
T PF00101_consen 5 FSYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGC 55 (99)
T ss_dssp TTTSS---HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTB
T ss_pred cccCCCCCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCC
Confidence 4667887 7889999999998888877754443 4567788 6665544
No 222
>PRK05867 short chain dehydrogenase; Provisional
Probab=22.25 E-value=96 Score=21.24 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=15.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+...+.+.|.+
T Consensus 10 k~vlVtGas~---gIG~~ia~~l~~ 31 (253)
T PRK05867 10 KRALITGAST---GIGKRVALAYVE 31 (253)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3589999987 777766666654
No 223
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=22.19 E-value=95 Score=21.45 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=15.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+..-+.++|.+
T Consensus 9 k~vlItGas~---gIG~~ia~~l~~ 30 (260)
T PRK08416 9 KTLVISGGTR---GIGKAIVYEFAQ 30 (260)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3588999886 666666666654
No 224
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.19 E-value=1e+02 Score=21.01 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=14.9
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.|+++||++ |+...+.+.|.+
T Consensus 7 ~vlItGa~~---~IG~~la~~l~~ 27 (258)
T PRK07890 7 VVVVSGVGP---GLGRTLAVRAAR 27 (258)
T ss_pred EEEEECCCC---cHHHHHHHHHHH
Confidence 489999987 666666666653
No 225
>PF13964 Kelch_6: Kelch motif
Probab=22.18 E-value=52 Score=16.78 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=9.2
Q ss_pred CeEEecCCCCC
Q psy8375 25 NIVITGGCCGF 35 (105)
Q Consensus 25 nIvl~GG~s~~ 35 (105)
+|++.||....
T Consensus 13 ~iyv~GG~~~~ 23 (50)
T PF13964_consen 13 KIYVFGGYDNS 23 (50)
T ss_pred EEEEECCCCCC
Confidence 49999999864
No 226
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=22.12 E-value=2e+02 Score=20.07 Aligned_cols=49 Identities=16% Similarity=0.378 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcchHHHhhcCeEEecCCCCCccHHHHHHHHHhhhCCCC
Q psy8375 3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE 53 (105)
Q Consensus 3 i~~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~ 53 (105)
|.++|..++...|...-.+--.-++|.|-.- .-|=+-...||+...|..
T Consensus 30 i~~~v~~avk~tPsaFNSQssR~ViL~gd~h--~KlWdivk~~l~~ivp~~ 78 (200)
T COG3560 30 IKEIVKEAVKHTPSAFNSQSSRVVILFGDEH--DKLWDIVKDELRAIVPAE 78 (200)
T ss_pred HHHHHHHHHhcCCcccccCCceEEEEeccch--HHHHHHHHHHHHHhcccc
Confidence 5678889999999887766656688888653 122233334999888753
No 227
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=22.12 E-value=1.5e+02 Score=21.32 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=21.5
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCC
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~ 61 (105)
-||+++|...+. +.-++.+.|+. +....+|.|.-+
T Consensus 3 GIVi~~g~~~~~-~a~~lI~~LR~-~g~~LPIEI~~~ 37 (271)
T PF11051_consen 3 GIVITAGDKYLW-LALRLIRVLRR-LGNTLPIEIIYP 37 (271)
T ss_pred EEEEEecCccHH-HHHHHHHHHHH-hCCCCCEEEEeC
Confidence 488888885544 33377777777 444445665443
No 228
>PRK09604 UGMP family protein; Validated
Probab=22.09 E-value=61 Score=24.11 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=30.3
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCC-C-----cccceehhhhhcc
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSN-P-----MTYAWEGGKLMSL 77 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~-~-----~~~aW~G~s~~a~ 77 (105)
.+|+++||.++=.-+.++|.+.+.+. .++++.++. | .-.+|.|...+.+
T Consensus 256 ~~lvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 256 KTLVVAGGVAANSGLRERLAELAKKR-----GIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CeEEEcChHHHHHHHHHHHHHHHHHC-----CCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57999999997776777777766431 245555442 1 2235666655544
No 229
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.06 E-value=98 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=16.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+..+|.+
T Consensus 7 k~vlItGas~---gIG~~ia~~l~~ 28 (261)
T PRK08265 7 KVAIVTGGAT---LIGAAVARALVA 28 (261)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 3589999887 777777777754
No 230
>PRK07856 short chain dehydrogenase; Provisional
Probab=22.06 E-value=94 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.+.|..
T Consensus 7 k~~lItGas~---gIG~~la~~l~~ 28 (252)
T PRK07856 7 RVVLVTGGTR---GIGAGIARAFLA 28 (252)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4589999987 777777777754
No 231
>KOG0104|consensus
Probab=22.05 E-value=93 Score=26.48 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=20.0
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVR 47 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~ 47 (105)
.+.|+|.||+|.+|-..+-|++-+.
T Consensus 365 In~ViL~Gg~TRVP~VQe~l~k~v~ 389 (902)
T KOG0104|consen 365 INQVILFGGATRVPKVQETLIKAVG 389 (902)
T ss_pred hheeEEecCcccCchHHHHHHHHHh
Confidence 3679999999999988887775443
No 232
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=22.01 E-value=98 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=14.6
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++|||++ |+...+.+.|.+
T Consensus 2 ~vlItGas~---gIG~aia~~l~~ 22 (259)
T PRK08340 2 NVLVTASSR---GIGFNVARELLK 22 (259)
T ss_pred eEEEEcCCc---HHHHHHHHHHHH
Confidence 688999887 666666655543
No 233
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.01 E-value=99 Score=20.77 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=16.1
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|+++||++ |+...+.+.+.+
T Consensus 6 ~~vlItGa~g---~iG~~~a~~l~~ 27 (238)
T PRK05786 6 KKVAIIGVSE---GLGYAVAYFALK 27 (238)
T ss_pred cEEEEECCCc---hHHHHHHHHHHH
Confidence 4689999986 677777766654
No 234
>KOG1210|consensus
Probab=21.99 E-value=1.6e+02 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=19.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhC
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLA 50 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~ 50 (105)
.+|+++||++ |+..-|..|+....
T Consensus 34 ~hi~itggS~---glgl~la~e~~~~g 57 (331)
T KOG1210|consen 34 RHILITGGSS---GLGLALALECKREG 57 (331)
T ss_pred ceEEEecCcc---hhhHHHHHHHHHcc
Confidence 6899999998 88888888887654
No 235
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=21.92 E-value=66 Score=23.75 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.2
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+|+++||.++=.=+.++|.+.+..
T Consensus 261 ~~v~lsGGVa~N~~l~~~l~~~~~~ 285 (314)
T TIGR03723 261 KTLVVAGGVAANSRLRERLEELAEK 285 (314)
T ss_pred CeEEEeccHHHHHHHHHHHHHHHHH
Confidence 4799999999877777888777754
No 236
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=21.92 E-value=64 Score=24.82 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=28.4
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhhhCCCCceeEEeCCCCCcccceehhhhhccc
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLD 78 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~aW~G~s~~a~l 78 (105)
+.|.++||++.=+-+.+-+.+-+ .+.|...+ ..++=.|+++++..
T Consensus 389 ~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~--~e~~a~GaA~~a~~ 433 (454)
T TIGR02627 389 SQLHIVGGGSQNAFLNQLCADAC--------GIRVIAGP--VEASTLGNIGVQLM 433 (454)
T ss_pred CEEEEECChhhhHHHHHHHHHHh--------CCceEcCC--chHHHHHHHHHHHH
Confidence 46999999987666655555444 33344332 23556898887754
No 237
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.81 E-value=97 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=15.6
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+++|||++ |+..-+.+.|.+
T Consensus 10 ~~lItGas~---gIG~aia~~l~~ 30 (251)
T PRK12481 10 VAIITGCNT---GLGQGMAIGLAK 30 (251)
T ss_pred EEEEeCCCc---hHHHHHHHHHHH
Confidence 489999987 777777766654
No 238
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=24 Score=22.54 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.0
Q ss_pred hhcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 22 LYENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 22 l~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++|++++|--|.+.-++.|+-+|-..
T Consensus 60 VlenfvisG~ISqi~~i~~~iv~e~se 86 (124)
T COG4835 60 VLENFVISGRISQINQIKDRIVKEPSE 86 (124)
T ss_pred eeeeeEEeeehHHHHHHHhHhccCHHH
Confidence 468999999999999999998854433
No 239
>PRK06057 short chain dehydrogenase; Provisional
Probab=21.79 E-value=1e+02 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=16.4
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ |+..-+.++|.+
T Consensus 8 ~~vlItGasg---gIG~~~a~~l~~ 29 (255)
T PRK06057 8 RVAVITGGGS---GIGLATARRLAA 29 (255)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4599999987 777777766654
No 240
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.65 E-value=1e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++++++||++ |+...+.++|..
T Consensus 11 ~~vlVtGa~g---~iG~~la~~L~~ 32 (274)
T PRK07775 11 RPALVAGASS---GIGAATAIELAA 32 (274)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3689999887 777888777764
No 241
>PRK08017 oxidoreductase; Provisional
Probab=21.43 E-value=94 Score=21.15 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|+++||++ |+...+.+.|.+
T Consensus 3 k~vlVtGasg---~IG~~la~~l~~ 24 (256)
T PRK08017 3 KSVLITGCSS---GIGLEAALELKR 24 (256)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 3589999977 777777777754
No 242
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.29 E-value=1.3e+02 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCcchHHHhhcCeEEecCCCCCccH
Q psy8375 5 ECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGI 38 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l~~nIvl~GG~s~~~g~ 38 (105)
++|.+++.+.|.|.| -=|+-|||.|..|++
T Consensus 167 ~AI~~aie~~~~d~r----VaiIaSG~LSH~p~~ 196 (329)
T cd07369 167 AAVRKAIEDLPDDLR----VAFMATGGLSHWPPY 196 (329)
T ss_pred HHHHHHHHhcCCCCC----EEEEEeCccccCCcc
Confidence 456666666554443 127889999997655
No 243
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=21.15 E-value=1.1e+02 Score=20.91 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=15.1
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++||++ |+...+.++|.+
T Consensus 14 ~vlItG~~g---~iG~~la~~l~~ 34 (247)
T PRK08945 14 IILVTGAGD---GIGREAALTYAR 34 (247)
T ss_pred EEEEeCCCc---hHHHHHHHHHHH
Confidence 489999887 666666666654
No 244
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=21.14 E-value=1.1e+02 Score=21.03 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=15.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.+++|||++ |+...+.+.|.+
T Consensus 9 k~vlVtGas~---gIG~~la~~l~~ 30 (260)
T PRK12823 9 KVVVVTGAAQ---GIGRGVALRAAA 30 (260)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3589999987 666666666654
No 245
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.12 E-value=1.1e+02 Score=20.75 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|+++||++ ++..-+.++|.+
T Consensus 7 ~~vlitGasg---~iG~~l~~~l~~ 28 (252)
T PRK06077 7 KVVVVTGSGR---GIGRAIAVRLAK 28 (252)
T ss_pred cEEEEeCCCC---hHHHHHHHHHHH
Confidence 4589999887 666777777654
No 246
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.11 E-value=1.1e+02 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.8
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++||++ ++...+.+.|.+
T Consensus 7 ~vlItG~sg---~iG~~l~~~l~~ 27 (248)
T PRK05557 7 VALVTGASR---GIGRAIAERLAA 27 (248)
T ss_pred EEEEECCCc---hHHHHHHHHHHH
Confidence 588999886 666666666643
No 247
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.00 E-value=1.1e+02 Score=21.05 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=14.9
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+++|||++ |+...+.+.|.+
T Consensus 9 ~vlVtGas~---gIG~~~a~~l~~ 29 (260)
T PRK07063 9 VALVTGAAQ---GIGAAIARAFAR 29 (260)
T ss_pred EEEEECCCc---hHHHHHHHHHHH
Confidence 589999886 666666666653
No 248
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=21.00 E-value=95 Score=16.05 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCcchHHHh
Q psy8375 5 ECIVDVIRSCPMEAQPHL 22 (105)
Q Consensus 5 ~~I~~si~~~~~d~r~~l 22 (105)
+.|.+++.++|+..|.-+
T Consensus 2 ~~l~~~l~~L~~~~r~i~ 19 (54)
T PF08281_consen 2 EALQQALAQLPERQREIF 19 (54)
T ss_dssp HHHHHHHHCS-HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 467888888888776544
No 249
>PRK06197 short chain dehydrogenase; Provisional
Probab=20.99 E-value=1e+02 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=15.9
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|++|||++ |+...+.++|.+
T Consensus 17 k~vlItGas~---gIG~~~a~~l~~ 38 (306)
T PRK06197 17 RVAVVTGANT---GLGYETAAALAA 38 (306)
T ss_pred CEEEEcCCCC---cHHHHHHHHHHH
Confidence 3599999987 677766666654
No 250
>PRK08309 short chain dehydrogenase; Provisional
Probab=20.95 E-value=1e+02 Score=20.74 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=14.7
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+++++||+ ||..++.+.|.+
T Consensus 2 ~vlVtGGt----G~gg~la~~L~~ 21 (177)
T PRK08309 2 HALVIGGT----GMLKRVSLWLCE 21 (177)
T ss_pred EEEEECcC----HHHHHHHHHHHH
Confidence 47899986 666677777755
No 251
>PRK06196 oxidoreductase; Provisional
Probab=20.88 E-value=1.1e+02 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.|++|||++ |+...+.++|.+
T Consensus 27 k~vlITGasg---gIG~~~a~~L~~ 48 (315)
T PRK06196 27 KTAIVTGGYS---GLGLETTRALAQ 48 (315)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3599999987 777777777654
No 252
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=20.88 E-value=1.1e+02 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=14.0
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.|+++||++ ++...+.+.|.+
T Consensus 5 ~ilItGas~---~iG~~la~~l~~ 25 (250)
T TIGR03206 5 TAIVTGGGG---GIGGATCRRFAE 25 (250)
T ss_pred EEEEeCCCC---hHHHHHHHHHHH
Confidence 488888877 566666555543
No 253
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=20.86 E-value=98 Score=22.10 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=15.7
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTL 49 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~ 49 (105)
+|+||||+. ++...|.++|...
T Consensus 1 ~vlvtGatG---~lG~~l~~~L~~~ 22 (367)
T TIGR01746 1 TVLLTGATG---FLGAYLLEELLRR 22 (367)
T ss_pred CEEEeccch---HHHHHHHHHHHhC
Confidence 588999887 5667777777554
No 254
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.77 E-value=1.1e+02 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+...+.+.|.+
T Consensus 7 k~vlItG~sg---giG~~la~~l~~ 28 (239)
T PRK08703 7 KTILVTGASQ---GLGEQVAKAYAA 28 (239)
T ss_pred CEEEEECCCC---cHHHHHHHHHHH
Confidence 3589999877 777777766654
No 255
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=20.58 E-value=1.3e+02 Score=19.68 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=8.6
Q ss_pred hhcCeEEec-CCC
Q psy8375 22 LYENIVITG-GCC 33 (105)
Q Consensus 22 l~~nIvl~G-G~s 33 (105)
=+++|++.| |+|
T Consensus 19 ~~~~iv~~GiGGS 31 (158)
T cd05015 19 KITDVVVIGIGGS 31 (158)
T ss_pred CCCEEEEEecCcc
Confidence 368899888 554
No 256
>PRK06123 short chain dehydrogenase; Provisional
Probab=20.55 E-value=1.1e+02 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=13.8
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.+++|||++ |+...+..+|.+
T Consensus 4 ~~lVtG~~~---~iG~~~a~~l~~ 24 (248)
T PRK06123 4 VMIITGASR---GIGAATALLAAE 24 (248)
T ss_pred EEEEECCCc---hHHHHHHHHHHH
Confidence 588899887 555555555543
No 257
>PLN02214 cinnamoyl-CoA reductase
Probab=20.54 E-value=88 Score=22.91 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=15.4
Q ss_pred hcCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 23 YENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 23 ~~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++|++|||+. .+...|.++|.+
T Consensus 10 ~~~vlVTGatG---fIG~~l~~~L~~ 32 (342)
T PLN02214 10 GKTVCVTGAGG---YIASWIVKILLE 32 (342)
T ss_pred CCEEEEECCCc---HHHHHHHHHHHH
Confidence 34699999976 455666666643
No 258
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.46 E-value=1.2e+02 Score=19.10 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=28.0
Q ss_pred CeEEecCCCCCccHHHHHHHHHhhhCCC-CceeEEeCCCC
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRTLAPD-EFDVNVVLPSN 63 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~~~p~-~~~v~v~~~~~ 63 (105)
+|++.-|+..-+|..+++.+.+.+.++. ...++++...+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4666667777889999999988887754 45677665543
No 259
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=20.38 E-value=1.1e+02 Score=20.69 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=14.3
Q ss_pred eEEecCCCCCccHHHHHHHHHhh
Q psy8375 26 IVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 26 Ivl~GG~s~~~g~~~Rl~~el~~ 48 (105)
|+++||++ |+...+...|.+
T Consensus 1 vlItGas~---giG~~~a~~l~~ 20 (239)
T TIGR01831 1 VLVTGASR---GIGRAIANRLAA 20 (239)
T ss_pred CEEeCCCc---hHHHHHHHHHHH
Confidence 57889887 667777766654
No 260
>PRK06172 short chain dehydrogenase; Provisional
Probab=20.34 E-value=1.1e+02 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
++|+++||++ |+...+.+.|.+
T Consensus 8 k~ilItGas~---~iG~~ia~~l~~ 29 (253)
T PRK06172 8 KVALVTGGAA---GIGRATALAFAR 29 (253)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3589999887 677666666654
No 261
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=20.26 E-value=1.1e+02 Score=21.61 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=15.5
Q ss_pred cCeEEecCCCCCccHHHHHHHHH
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el 46 (105)
-+|.|+||+|- .++-++|.+..
T Consensus 35 ~~i~lsgG~tP-~~~y~~L~~~~ 56 (253)
T PTZ00285 35 FVLGLPTGSTP-LPTYQELIRAY 56 (253)
T ss_pred eEEEEcCCCCH-HHHHHHHHHHH
Confidence 36999999994 34666666554
No 262
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=20.22 E-value=1e+02 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=13.8
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+|++|||+. .+...|.+.|.+
T Consensus 2 kilITGgtG---~iG~~l~~~L~~ 22 (352)
T PRK10084 2 KILVTGGAG---FIGSAVVRHIIN 22 (352)
T ss_pred eEEEECCCc---HHhHHHHHHHHH
Confidence 589999988 444555555543
No 263
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=20.22 E-value=1.1e+02 Score=20.89 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.0
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.+.|.+
T Consensus 11 ~~lItGas~---giG~~ia~~L~~ 31 (254)
T PRK08085 11 NILITGSAQ---GIGFLLATGLAE 31 (254)
T ss_pred EEEEECCCC---hHHHHHHHHHHH
Confidence 488999887 666666666654
No 264
>PRK07074 short chain dehydrogenase; Provisional
Probab=20.21 E-value=1.1e+02 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=16.4
Q ss_pred CeEEecCCCCCccHHHHHHHHHhh
Q psy8375 25 NIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 25 nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
.++++||++ |+...+.+.|.+
T Consensus 4 ~ilItGat~---~iG~~la~~L~~ 24 (257)
T PRK07074 4 TALVTGAAG---GIGQALARRFLA 24 (257)
T ss_pred EEEEECCcc---hHHHHHHHHHHH
Confidence 488999988 777777777754
No 265
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=20.10 E-value=1.1e+02 Score=21.03 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=15.7
Q ss_pred cCeEEecCCCCCccHHHHHHHHHhh
Q psy8375 24 ENIVITGGCCGFAGIRDRVESDVRT 48 (105)
Q Consensus 24 ~nIvl~GG~s~~~g~~~Rl~~el~~ 48 (105)
+.++++||++ |+..-+.+.|.+
T Consensus 7 k~vlVtGas~---gIG~~ia~~l~~ 28 (263)
T PRK06200 7 QVALITGGGS---GIGRALVERFLA 28 (263)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3589999987 666666666654
No 266
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=20.01 E-value=72 Score=22.93 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.7
Q ss_pred eEEecCCCCCccHHHHHHHHH
Q psy8375 26 IVITGGCCGFAGIRDRVESDV 46 (105)
Q Consensus 26 Ivl~GG~s~~~g~~~Rl~~el 46 (105)
|+||| ..-|+++|+.+.+
T Consensus 106 illCG---rYEGiDeRi~~~~ 123 (233)
T TIGR00088 106 ILICG---RYEGFDERIIQLE 123 (233)
T ss_pred EEEec---cccCcHHHHHhcc
Confidence 67777 8899999998744
Done!