RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8375
(105 letters)
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 94.6 bits (236), Expect = 1e-24
Identities = 32/103 (31%), Positives = 55/103 (53%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
G+ E + + I+ C ++ + LYENIV++GG G +R+E +++ LAP + V V+
Sbjct: 270 KGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA 329
Query: 61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
P W GG +++ F +TK+EYEE G + +
Sbjct: 330 PPERKYSVWLGGSILASLSTFEDMWITKKEYEESGSQIVERKC 372
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 85.0 bits (211), Expect = 5e-21
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
G+ E I D I +C ++ +P L NIV+TGG F G +R+E ++ LAP V ++
Sbjct: 263 AGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIA 322
Query: 61 PSNPMTY-AWEGGK-LMSLDPEFYSFVVTKEEYEEEGLALCYERF 103
P N Y AW GG L SL F V+K+EYEE G ++ +
Sbjct: 323 PPNERKYSAWIGGSILASL-GTFQQMWVSKQEYEEHGSSVVERKC 366
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 80.5 bits (199), Expect = 3e-19
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ E + I+ C + + LY NIV+TGG G +R++ ++ +LAP + V+V+ P
Sbjct: 342 GLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPP 401
Query: 62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYE 101
+P AW G +++ F +TKEEYEE G + E
Sbjct: 402 PDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQE 441
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 80.2 bits (198), Expect = 4e-19
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 20/117 (17%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRT------------ 48
+ E + D I+SCP++ + LY+NIV++GG F G R++ DVR
Sbjct: 291 TPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEEL 350
Query: 49 ----LAPDEFDVNVVLPSNPMT-YA-WEGGKLMSLDPEFYSFVVTKEEYEEEGLALC 99
L P DVNVV S+P YA W GG +++ PEF TK EY+E G ++C
Sbjct: 351 SGGKLKPIPIDVNVV--SHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSIC 405
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 78.3 bits (193), Expect = 1e-18
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ E I C ++ + LY NIV++GG + G+ +R+ ++ TLAP + VV P
Sbjct: 276 GIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAP 335
Query: 62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
W GG ++S P F VTKEEY+E G
Sbjct: 336 PERKYSVWIGGSILSSLPTFQQMWVTKEEYDESG 369
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 67.4 bits (164), Expect = 1e-14
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ E + I C ++ + LY N+V++GG F GI DR+ ++ LAP + ++ P
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP 333
Query: 62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
W GG +++ F ++KEEY+E G ++ + +
Sbjct: 334 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRK 374
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 62.7 bits (152), Expect = 6e-13
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
+G+SE IV I M+ + LY +IV++GG F G DR+ +++R AP + + +
Sbjct: 277 LGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336
Query: 61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
P + GG +++ F ++K+E++E G + + +
Sbjct: 337 PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRK 378
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 53.6 bits (128), Expect = 1e-09
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ I+ C ++ + L NIV++GG F GI +R+ +++ L P + + V P
Sbjct: 273 GIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAP 332
Query: 62 SNPMTYAWEGGK----LMSLDPEFYSFVVTKEEYEEEGLALCYER 102
+ AW GG L + P++ + ++EY+E+G ++ + +
Sbjct: 333 PDRRFSAWIGGSIQCTLSTQQPQW----IKRQEYDEQGPSIVHRK 373
>gnl|CDD|165303 PHA03002, PHA03002, Hypothetical protein; Provisional.
Length = 679
Score = 29.7 bits (67), Expect = 0.27
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 7 IVDVIRSCPMEAQPHLYENIVI 28
I+D+++ P A P+LY N+ I
Sbjct: 153 IIDLVKDIPSYATPYLYNNLSI 174
>gnl|CDD|236346 PRK08898, PRK08898, coproporphyrinogen III oxidase; Provisional.
Length = 394
Score = 28.0 bits (63), Expect = 0.74
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 36 AGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGK 73
AG+ DR+ SDVR L P + D + L +NP T+ E K
Sbjct: 90 AGL-DRLLSDVRALLPLDPDAEITLEANPGTF--EAEK 124
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 27.9 bits (63), Expect = 0.99
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPM 65
E+I + GG C G + E + + V P +P+
Sbjct: 223 EDIYLVGGTCCLPGFEEVFEK--------QTGLPVHKPQHPL 256
>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR.
These classical SDRs includes members identified as
retinol dehydrogenases, which convert retinol to
retinal, a property that overlaps with 17betaHSD
activity. 17beta-dehydrogenases are a group of isozymes
that catalyze activation and inactivation of estrogen
and androgens, and include members of the short-chain
dehydrogenases/reductase family. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 261
Score = 27.5 bits (61), Expect = 1.1
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 33 CGFAGIRDRVESDVRTLAPDE----FDVNVVLPSNPMTYAWEGGKLMSLDPE 80
+ + + + + LA DE VN + P N T WE + D
Sbjct: 157 APYVATKGAITAMTKALAVDESRYGVRVNCISPGNIWTPLWEELAAQTPDTL 208
>gnl|CDD|182081 PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific
transporter subunits IIBC; Provisional.
Length = 472
Score = 27.8 bits (62), Expect = 1.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 27 VITGGCCG-FAGIRDRVESDVRTLAPDEF-DVNVVLPSNPMTYAWEGGKLMSLDPEFYSF 84
+I+G CG AG+ + AP F V P+NPM+ W +M+L SF
Sbjct: 393 LISGFICGAVAGMAGLASHSMA--APGLFTSVQFFDPANPMSIVWVFA-VMAL-AVVLSF 448
Query: 85 VVT 87
++T
Sbjct: 449 ILT 451
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 26.4 bits (59), Expect = 3.1
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNV 58
L IV+TGG GI + LA FD V
Sbjct: 313 ELNGGIVLTGGGAQLEGIVE--------LAEKVFDNPV 342
>gnl|CDD|216277 pfam01065, Adeno_hexon, Hexon, adenovirus major coat protein,
N-terminal domain. Hexon is the major coat protein from
adenovirus type 2. Hexon forms a homo-trimer. The 240
copies of the hexon trimer are organised so that 12 lie
on each of the 20 facets. The central 9 hexons in a
facet are cemented together by 12 copies of polypeptide
IX. The penton complex, formed by the peripentonal
hexons and base hexon (holding in place a fibre), lie at
each of the 12 vertices. The N and C-terminal domains
adopt the same PNGase F-like fold although they are
significantly different in length.
Length = 488
Score = 26.0 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 51 PDEFDV---NVVLPSNPMTYAWEGGKL 74
PD++ NV LP+N TYA+ G++
Sbjct: 393 PDKYKFTPPNVTLPTNTNTYAYMNGRV 419
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 25.9 bits (57), Expect = 3.9
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPM 65
+++ + GG C F+G D E + +NV+ P +P+
Sbjct: 196 KDLYLVGGACSFSGFADVFEK--------QLGLNVIKPQHPL 229
>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
Length = 360
Score = 26.1 bits (58), Expect = 3.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 68 AWEGGKLMSLDPEFYSFVVTKEEYEEE 94
AWEGGK+ L E S V++K+ E+
Sbjct: 131 AWEGGKMKMLAVELASPVLSKDCIEKN 157
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core. This domain is
found in eukaryotes, and is about 20 amino acids in
length. It is found associated with pfam10597,
pfam10596, pfam10598, pfam08083, pfam08082, pfam01398,
pfam08084. There is a conserved LILR sequence motif. The
domain is a selenomethionine domain in a subunit of the
spliceosome. The function of PRP8 domain IV is believed
to be interaction with the splicosomal core.
Length = 231
Score = 25.8 bits (57), Expect = 4.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 4 SECIVDVIRSCPMEAQP----------------HL--YENIVITG 30
+E + +IRS P E QP HL + NIVI G
Sbjct: 83 AEEVAALIRSLPKEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIRG 127
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 25.9 bits (57), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 24 ENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTY 67
N+V+ G G+AG VR L P ++++ V+ P N M +
Sbjct: 11 PNVVVLG--TGWAGA-----YFVRNLDPKKYNITVISPRNHMLF 47
>gnl|CDD|216836 pfam01995, DUF128, Domain of unknown function DUF128. This
archaebacterial protein family has no known function.
The domain is found duplicated in MTH_1569. Many of
these are attached to an N-terminal winged helix domain
suggesting these are transcriptional regulators and that
this domain has a ligand binding function.
Length = 236
Score = 25.6 bits (57), Expect = 5.4
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 11 IRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTL----APDEFDVNVVLPSNPMT 66
IR PM A+ E I+ G G+ + E + L P + ++ NP+
Sbjct: 152 IREIPMSAREKA-EEILDKLEEAGLNGVLEIGEPNEDVLGIPVEPGRVGIVLIGGLNPIA 210
Query: 67 YAWEGG 72
A E G
Sbjct: 211 AAVENG 216
>gnl|CDD|226342 COG3821, COG3821, Predicted membrane protein [Function unknown].
Length = 234
Score = 25.5 bits (56), Expect = 5.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 25 NIVITGGCCGFAGIRDRVESDVRTLA 50
++ GGC G DRV S + L
Sbjct: 76 TLIALGGCFALLGATDRVLSVLSDLP 101
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 76 SLDPEFYSFVVTKEEYE 92
S DP+FY+F+ + YE
Sbjct: 288 SQDPDFYAFIRSLRAYE 304
>gnl|CDD|217789 pfam03915, AIP3, Actin interacting protein 3.
Length = 424
Score = 25.4 bits (56), Expect = 6.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 24 ENIVITGGCCGFAGIRDRVESDVRTLAPD 52
N+ I +D+V +VR L PD
Sbjct: 338 ANLPIPEPGESPNDAKDQVLGEVRALNPD 366
>gnl|CDD|227754 COG5467, COG5467, Uncharacterized conserved protein [Function
unknown].
Length = 104
Score = 24.9 bits (54), Expect = 7.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 69 WEGGKLMSLDPEFYSFVVTKEEYEEEG 95
W G L D E Y+ V ++EE G
Sbjct: 36 WAAGLLGKSDAEAYAREVVASDFEEAG 62
>gnl|CDD|232992 TIGR00474, selA, seryl-tRNA(sec) selenium transferase. In
bacteria, the incorporation of selenocysteine as the
21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes SelA.
This model excludes homologs that appear to differ in
function from Frankia alni, Helicobacter pylori,
Methanococcus jannaschii and other archaea, and so on
[Protein synthesis, tRNA aminoacylation].
Length = 454
Score = 25.2 bits (56), Expect = 8.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 40 DRVESDVRTLAPDEFDV 56
DR D+RTL DE ++
Sbjct: 432 DRFLLDLRTLLEDEEEL 448
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 25.0 bits (55), Expect = 8.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 74 LMSLDPEFYSFVVTKEEYEEEGLALC 99
L +DPE Y + + E + + LC
Sbjct: 80 LEEVDPELYRSLKSLLELDGDEEELC 105
>gnl|CDD|233644 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully described
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 317
Score = 25.1 bits (55), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 78 DPEFYSFVVTKEEYE 92
DPEFYSF + E YE
Sbjct: 280 DPEFYSFWRSLEAYE 294
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 78 DPEFYSFVVTKEEYEE 93
DPEFY+F + E Y
Sbjct: 225 DPEFYAFYRSLEAYRN 240
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 24.9 bits (55), Expect = 9.0
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
G+ E I V+ P E + E IV+TGG G+ + +E V V++
Sbjct: 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLS--------EETGVPVII 313
Query: 61 PSNPMTYA 68
+P+T
Sbjct: 314 ADDPLTCV 321
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional.
Length = 1229
Score = 25.1 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 7/24 (29%)
Query: 25 NIVITGGCCG-----FAGIRDRVE 43
NIV GGCCG A I + V
Sbjct: 308 NIV--GGCCGTTPEHIAAIAEAVA 329
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.438
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,557,082
Number of extensions: 473127
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 36
Length of query: 105
Length of database: 10,937,602
Length adjustment: 70
Effective length of query: 35
Effective length of database: 7,832,822
Effective search space: 274148770
Effective search space used: 274148770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)