RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8375
(105 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 91.7 bits (228), Expect = 1e-23
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ E + I C ++ + LY N V++GG + GI DR++ ++ LAP + ++ P
Sbjct: 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
Query: 62 SNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
W GG +++ F +TK+EY+E G ++ + +
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRK 373
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 86.4 bits (214), Expect = 1e-21
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE-------- 53
+ E + +V++S P++ + LY+NIV++GG F +R++ D++ + +
Sbjct: 306 PLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLS 365
Query: 54 ------FDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCY 100
DVNV+ W GG L++ PEF S+ TK +YEE G ++
Sbjct: 366 GAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIAR 418
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 85.2 bits (211), Expect = 3e-21
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDE-------- 53
GV+E + + I++ ++ + Y++IV++GG + G+ R+E +++ L +
Sbjct: 277 GVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEK 336
Query: 54 ---FDVNVVLPSNPMTYAWEGGK-LMSLDPEFYSFVVTKEEYEEEGLALCY 100
F + + P + GG L + + +F +T++EY+E+G+ +
Sbjct: 337 LSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLE 387
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 81.6 bits (201), Expect = 9e-20
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
+G+++ + I S ++ + L N+V+TGG G+ DR+ +++ + P ++
Sbjct: 392 IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-LKFRILT 450
Query: 61 PSNPMTY---AWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
+ + +W GG +++ F+ V K+EYEE G+
Sbjct: 451 TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLND 495
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 79.7 bits (197), Expect = 3e-19
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR------------- 47
+SE + +VI++CP++ + LY+NIV++GG F R++ D++
Sbjct: 294 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL 353
Query: 48 ---TLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
L P DV V+ W GG +++ PEFY TK++YEE G ++C
Sbjct: 354 SGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHN 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.046
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEF------- 54
G S I+D++ + P+ H GG G IR+ + + D
Sbjct: 1658 GFS--ILDIVINNPVNLTIHF-------GGEKGKR-IRENYSAMIFETIVDGKLKTEKIF 1707
Query: 55 -DVNVVLPSNPMTYAWEG--GKLMSLDPEFYS---FVVTK---EEYEEEGL 96
++N S Y + G L + +F ++ K E+ + +GL
Sbjct: 1708 KEINEHSTS----YTFRSEKGLLSA--TQFTQPALTLMEKAAFEDLKSKGL 1752
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.26
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 10/27 (37%)
Query: 38 IRDRVESDVRTLAPDEFDVNVVLPSNP 64
++ ++++ ++ A D S P
Sbjct: 22 LK-KLQASLKLYADD---------SAP 38
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 28.3 bits (64), Expect = 0.37
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 8/41 (19%)
Query: 26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMT 66
+ + GG G + V +P +P+
Sbjct: 230 VYVVGGTAYLTGFSEEFS--------RFLGKEVQVPIHPLL 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.65
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 42 VESDVRTLAPDE----------FDVNVVLPSNPMTYAWEGGKLMSLDPE 80
+ES + L P E F + +P+ ++ W ++ D
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVM 405
Score = 27.1 bits (59), Expect = 1.2
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 8 VDVIRSCPMEAQPHLYENIVITG--GC 32
+R +E +P +N++I G G
Sbjct: 137 YLKLRQALLELRPA--KNVLIDGVLGS 161
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 27.5 bits (61), Expect = 0.80
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLP 61
G+ + R + + + +++V+TGG G+R +E + V +
Sbjct: 190 GIHRSVAS--RVIGLANRVGIVKDVVMTGGVAQNYGVRGALE--------EGLGVEIKTS 239
Query: 62 SNP 64
Sbjct: 240 PLA 242
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1
f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E*
1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E*
1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E*
2bcc_E* ...
Length = 196
Score = 27.4 bits (60), Expect = 0.84
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 44 SDVRTLAPDEFDVNVVLPSNPMTYAWEG 71
+DV ++ E ++ + M + W G
Sbjct: 66 ADVLAMSKIEIKLSDIPEGKNMAFKWRG 93
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 26.9 bits (59), Expect = 0.98
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 50 APDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEY 91
P++ + P P W +L +L F + + Y
Sbjct: 11 IPEDQEPEDQEPEEPTPAPW--ARLWALQDGFANLECVNDNY 50
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 26.6 bits (59), Expect = 1.6
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 3 VSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL-- 60
+ +V E + + +V+TGG I + LA + F V
Sbjct: 309 SKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINE--------LATEVFKSPVRTGC 360
Query: 61 PSNPMTYAWEGGKLMSLDPEF 81
+N + ++ DP F
Sbjct: 361 YANSDRPSIINADEVANDPSF 381
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 1.7
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 38 IRDRVESDV------RTLAPDEFDVNVVLPSNPMTYAWEGGKLM---SLDPEFYSFVVTK 88
++ + E+ + R + P+ F+ Y E +++ ++ + F +K
Sbjct: 890 VKAKYETSILEHSGIRLIEPELFNG----------YNPEKKEMIQEVIVEEDLEPFEASK 939
Query: 89 EEYEE 93
E E+
Sbjct: 940 ETAEQ 944
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 26.3 bits (59), Expect = 1.8
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 21/68 (30%)
Query: 25 NIVITGGCCGFAG---IRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDP-- 79
I+ITGG GF G +R +++ + VN+ + +TYA G L SL
Sbjct: 2 KILITGG-AGFIGSAVVRHIIKN------TQDTVVNI----DKLTYA---GNLESLSDIS 47
Query: 80 --EFYSFV 85
Y+F
Sbjct: 48 ESNRYNFE 55
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 26.0 bits (57), Expect = 2.5
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 26 IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFV 85
+ GG G+ + + ++ V P + + + L F
Sbjct: 310 GYLLGGGSKLRGLASLLTDTLGV------NLEPVNPWEAVAVDPKRFESEQLQEIGPEFA 363
Query: 86 V 86
V
Sbjct: 364 V 364
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 26.3 bits (57), Expect = 2.6
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 24 ENIVITGGCCGFAGIRDRVE--SDVRTLAPDEFDVNVVLPSNPMTYAW 69
E G G I ++ D+ L PD + +N P+ +T A
Sbjct: 115 ETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV 162
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA
glycosylase; hydrolase, hydrolase/complex, SMUG1; HET:
3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A*
1oe6_A*
Length = 247
Score = 25.5 bits (55), Expect = 3.5
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 49 LAPDEFDVNVVLPSNPMTYAWE 70
L+ F V NP+ YAW
Sbjct: 19 LSNLVFQDPVQYVYNPLVYAWA 40
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 25.7 bits (56), Expect = 3.9
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 35 FAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYE 92
GI+ V D ++V ++ +T G L P Y+ T Y+
Sbjct: 320 HQGIKGMV-LDQNYNNLANAVISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPGYD 376
>1uf2_P Outer capsid protein P8; virus components, icosahedral virus; 3.50A
{Rice dwarf virus} SCOP: a.115.1.3 b.19.1.1
Length = 421
Score = 25.2 bits (54), Expect = 4.7
Identities = 8/54 (14%), Positives = 23/54 (42%)
Query: 15 PMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYA 68
P++ +++ + + + CG+ + SD + D+F + P + +
Sbjct: 60 PLQTMSNMFVSFITSTDRCGYMLRKTWFNSDTKPTVSDDFITTYIRPRLQVPMS 113
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 24.9 bits (55), Expect = 6.0
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 18/66 (27%)
Query: 25 NIVITGGCCGFAGIRDRVESD-VRTLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDP---- 79
++ITGG CGF G S+ D+ +V + ++ G +L
Sbjct: 3 KLLITGG-CGFLG------SNLASFALSQGIDL-IVFDN--LSRK---GATDNLHWLSSL 49
Query: 80 EFYSFV 85
+ FV
Sbjct: 50 GNFEFV 55
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 24.9 bits (54), Expect = 6.7
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 18 AQPHLYENIVITGGCCGFAGIRDRVES-DVRT 48
P++ ++ VI G G+R + + DV+T
Sbjct: 160 IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT 191
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 24.7 bits (53), Expect = 8.8
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 2 GVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVE--SDVRTLAPDEFDVNVV 59
+ +D P++ E G G I +E + +PD + +N
Sbjct: 114 KYAMRALD--EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 171
Query: 60 LPSNPMTYAW 69
P+ + A
Sbjct: 172 NPAAIVAEAT 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.438
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,755,889
Number of extensions: 96494
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 32
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)