RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8375
(105 letters)
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 89.4 bits (221), Expect = 3e-24
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVL 60
G+ E + I C ++ + LY N V++GG + GI DR++ ++ LAP + ++
Sbjct: 126 AGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 185
Query: 61 PSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEG 95
P W GG +++ F +TK+EY+E G
Sbjct: 186 PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAG 220
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 88.7 bits (219), Expect = 1e-23
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVR------------- 47
+SE + +VI++CP++ + LY+NIV++GG F R++ D++
Sbjct: 134 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL 193
Query: 48 ---TLAPDEFDVNVVLPSNPMTYAWEGGKLMSLDPEFYSFVVTKEEYEEEGLALCYER 102
L P DV V+ W GG +++ PEFY TK++YEE G ++C
Sbjct: 194 SGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHN 251
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 58.6 bits (141), Expect = 1e-12
Identities = 13/52 (25%), Positives = 33/52 (63%)
Query: 1 MGVSECIVDVIRSCPMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPD 52
+GV+E + + I++ ++ + Y++IV++GG + G+ R+E +++ L +
Sbjct: 123 VGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLE 174
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 26.7 bits (58), Expect = 0.58
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 21 HLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNP 64
+ +++V+TGG G+R +E + V +
Sbjct: 206 GIVKDVVMTGGVAQNYGVRGALE--------EGLGVEIKTSPLA 241
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 26.4 bits (57), Expect = 0.64
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 6 CIVDVIRSCPMEAQPHLYEN-IVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNP 64
+ + P E + E I +TGG G+ ++ E ++V+ P
Sbjct: 120 SVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQ--------KETGISVIRSEEP 171
Query: 65 MT 66
+T
Sbjct: 172 LT 173
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
2 [TaxId: 10515]}
Length = 646
Score = 26.2 bits (58), Expect = 0.91
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 51 PDEFDV---NVVLPSNPMTYAWEGGKL 74
PD+ NV + NP TY + ++
Sbjct: 493 PDKLKYNPTNVEISDNPNTYDYMNKRV 519
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
cytochrome bc1-complex, water-soluble domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 24.7 bits (53), Expect = 2.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 45 DVRTLAPDEFDVNVVLPSNPMTYAWEG 71
DV +A E ++ + + W+G
Sbjct: 1 DVLAMAKVEVNLAAIPLGKNVVVKWQG 27
>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
[TaxId: 10991]}
Length = 268
Score = 23.4 bits (50), Expect = 6.4
Identities = 8/54 (14%), Positives = 23/54 (42%)
Query: 15 PMEAQPHLYENIVITGGCCGFAGIRDRVESDVRTLAPDEFDVNVVLPSNPMTYA 68
P++ +++ + + + CG+ + SD + D+F + P + +
Sbjct: 60 PLQTMSNMFVSFITSTDRCGYMLRKTWFNSDTKPTVSDDFITTYIRPRLQVPMS 113
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
{Human (Homo sapiens) [TaxId: 9606]}
Length = 219
Score = 23.6 bits (51), Expect = 6.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 4 SECIVDVIRSCPMEAQPHLYENIVIT 29
+E + +IRS P+E QP + I++T
Sbjct: 72 AEEVAALIRSLPVEEQP---KQIIVT 94
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 253
Score = 23.2 bits (50), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 4 SECIVDVIRSCPMEAQPHLYENIVIT 29
+E + ++RS P E QP + I++T
Sbjct: 80 AEEVSALVRSLPKEEQP---KQIIVT 102
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 23.5 bits (49), Expect = 7.4
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 48 TLAPDEFDVNVVLPSNPMTYAWEGGKLM 75
L P + +V V+LP + +Y + ++
Sbjct: 2 ALPPQKIEVLVLLPQDD-SYLFSLTRVR 28
>d1chda_ c.40.1.1 (A:) Methylesterase CheB, C-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 22.9 bits (49), Expect = 9.8
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 26 IVITG-GCCGFAGIRDRVESDVRTLAPDE 53
+++TG G G AG+ ++ T+A +E
Sbjct: 127 VILTGMGNDGAAGMLAMYQAGAWTIAQNE 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.438
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,046
Number of extensions: 18703
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 14
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)