BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8376
         (328 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
           From Rhizobium Leguminosarum: A New Member Of The
           Alkaline Phosphatase Superfamily
          Length = 514

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 16  KEEPQWLLHQPKVTMLISSKKDEELPSEINNKYLEFKKDNKDKILCYTDGSKTNTFTGGA 75
           +  P ++   P   M     + E++P+ I     + +      +  Y D  +  +F  GA
Sbjct: 216 RPHPPFVASAPYHAMY----RPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGA 271

Query: 76  YLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQ 132
                T+++ +L Q+ + Y   +  +D CL  +  Y+     + D +I   S    Q
Sbjct: 272 EGSGATLDEAELRQMRATYCGLITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHGEQ 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,932,208
Number of Sequences: 62578
Number of extensions: 330367
Number of successful extensions: 847
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 13
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)