BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8376
         (328 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P33459|POL_CAEVC Pol polyprotein OS=Caprine arthritis encephalitis virus (strain
           Cork) GN=pol PE=3 SV=1
          Length = 1109

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N      ++++ T E+F+ ++  +    EL AI+  L             +  
Sbjct: 582 YTDGGKKNKVGSLGFIVS-TGEKFRKHEEGTNQQLELRAIEEALKQ---------GPQTM 631

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180
            + +DS+ + + L  N ++ ++ + I  +I EI+    ++   W+P H GI +NE +D+
Sbjct: 632 NLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDK 690


>sp|P03370|POL_VILV Pol polyprotein OS=Maedi visna virus (strain 1514) GN=pol PE=3 SV=1
          Length = 1105

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N      Y+ + T E+F++++  +    EL AI+                +  
Sbjct: 577 YTDGGKKNGRGSLGYIAS-TGEKFRIHEEGTNQQLELRAIEEACKQ---------GPEKM 626

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180
            I +DS+ + + +  N ++ ++ + I  +I E+     ++   W+P H GI +NE +DR
Sbjct: 627 NIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 685


>sp|P23427|POL_VILV2 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
           GN=pol PE=3 SV=1
          Length = 1105

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N      Y+ + T E+F++++  +    EL AI+                +  
Sbjct: 577 YTDGGKKNGRGSLGYIAS-TGEKFRIHEEGTNQQLELRAIEEACKQ---------GPEKM 626

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180
            I +DS+ + + +  N ++ ++ + I  +I E+     ++   W+P H GI +NE +DR
Sbjct: 627 NIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 685


>sp|P35956|POL_VILVK Pol polyprotein OS=Maedi visna virus (strain KV1772) GN=pol PE=1
           SV=1
          Length = 1101

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N      Y+ + T E+F++++  +    EL AI+                +  
Sbjct: 573 YTDGGKKNGRGSLGYITS-TGEKFRIHEEGTNQQLELRAIEEACKQ---------GPEKM 622

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180
            I +DS+ + + +  N ++ ++ + I  +I E+     ++   W+P H GI +NE +DR
Sbjct: 623 NIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 681


>sp|P23426|POL_VILV1 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
           GN=pol PE=3 SV=1
          Length = 1105

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N      Y+ + T E+F++ +  +    EL AI+                +  
Sbjct: 577 YTDGGKKNGRGSLGYIAS-TGEKFRIYEEGTNQQLELRAIEEACKQ---------GPEKM 626

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180
            I +DS+ + + +  N ++ ++ + I  +I E+     ++   W+P H GI +NE +DR
Sbjct: 627 NIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELMHNKEKIGVHWVPGHKGIPQNEEIDR 685


>sp|P16901|POL_OMVVS Pol polyprotein OS=Ovine maedi visna related virus (strain South
           Africa) GN=pol PE=3 SV=1
          Length = 1086

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 10/128 (7%)

Query: 62  YTDGSKTNTFTGGAYLLNETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121
           YTDG K N   G    +  T  +F+ ++  +    EL AI+                +  
Sbjct: 558 YTDGGKKNG-KGSLGFIASTGVKFRKHEEGTNQQLELRAIEEACKQ---------GPEKM 607

Query: 122 VICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRA 181
            I +DS+ + + ++ N ++ ++ + I  +I ++     Q+   W+P H GI +NE +D+ 
Sbjct: 608 NIVTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEEIDKY 667

Query: 182 ARNAVNAR 189
                 AR
Sbjct: 668 ISEIFLAR 675


>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
            GN=gag-pol PE=3 SV=4
          Length = 1462

 Score = 37.0 bits (84), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 15/87 (17%)

Query: 96   AELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKF--NLNDSILISKILLKIKE 153
            AEL A+DL L      +          I +DS+  +  L+   + +DS ++ +I+ K+ +
Sbjct: 1091 AELWAVDLALKDSGAQVN---------IVTDSQYVMGVLQGLPDQSDSPIVEQIIQKLTQ 1141

Query: 154  ISSFGSQVSFLWIPSHVGIRENEMVDR 180
             ++    +   W+P+H GI  NE VD+
Sbjct: 1142 KTA----IYLAWVPAHKGIGGNEEVDK 1164


>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
            (isolate ANT70) GN=gag-pol PE=3 SV=3
          Length = 1435

 Score = 35.8 bits (81), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 17/123 (13%)

Query: 62   YTDGSKT-NTFTGGAYLLNETVEQ--FQLNQIASIYTAELMAIDLCLNSILMYIQNNFCF 118
            Y DG+    T  G A  + E  +Q   +L++  +   AELMAI L L             
Sbjct: 1027 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTN-QKAELMAILLALQD----------S 1075

Query: 119  KDFV-ICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEM 177
            K+ V I +DS+ +L  +      S   S I+ +I E  +   QV   W+P+H GI  NE 
Sbjct: 1076 KETVNIVTDSQYALGVISSQPTQSE--SPIVQQIIEELTKKEQVYLTWVPAHKGIGGNEK 1133

Query: 178  VDR 180
            +D+
Sbjct: 1134 IDK 1136


>sp|B7JVG1|RNH_CYAP8 Ribonuclease H OS=Cyanothece sp. (strain PCC 8801) GN=rnhA PE=3
           SV=1
          Length = 163

 Score = 35.8 bits (81), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 54  DNKDKILCYTDGSKTNTFTGGAYLL--------NETVEQFQLN------QIASIYTAELM 99
           D+  K+L YTDG+ +     G Y           E    F+L        +A+I   E +
Sbjct: 3   DSPKKVLIYTDGACSGNPGSGGYGTVLIYNNHRKELSGGFRLTTNNRMEMMAAIVGLETL 62

Query: 100 AIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGS 159
            I     ++ +Y  + +           K      K N  ++     +  K+ ++ S   
Sbjct: 63  TIKC---AVTLYTDSRYLVDAITKGWAKKWKANGWKRNAKENAKNPDLWEKLLDLCSQ-H 118

Query: 160 QVSFLWIPSHVGIRENEMVDRAARNA 185
           +V F+W+  H G +ENE  DR A  A
Sbjct: 119 EVDFVWVKGHAGHQENEYCDRLAVRA 144


>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
            (isolate YBF30) GN=gag-pol PE=3 SV=3
          Length = 1449

 Score = 35.8 bits (81), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 12/86 (13%)

Query: 105  LNSILMYIQNNFCFKDFVICSDSKSSLQAL--KFNLNDSILISKILLKI--KEISSFGSQ 160
            L +ILM +Q +   +D  I +DS+ ++  +  + + ++S L+S+I+ ++  KE      +
Sbjct: 1076 LQAILMALQESG--RDVNIVTDSQYAMGIIHSQPDKSESELVSQIIEELIKKE------R 1127

Query: 161  VSFLWIPSHVGIRENEMVDRAARNAV 186
            V   W+P+H GI  NE VD+   + +
Sbjct: 1128 VYLSWVPAHKGIGGNEQVDKLVSSGI 1153


>sp|C3LPN8|RNH_VIBCM Ribonuclease H OS=Vibrio cholerae serotype O1 (strain M66-2)
           GN=rnhA PE=3 SV=1
          Length = 156

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 160 QVSFLWIPSHVGIRENEMVDRAARNAV 186
           QV + W+  H G RENEM D  AR A 
Sbjct: 115 QVEWRWVKGHAGHRENEMCDELARQAA 141


>sp|Q9KPX8|RNH_VIBCH Ribonuclease HI OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
           El Tor Inaba N16961) GN=rnhA PE=3 SV=1
          Length = 156

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 160 QVSFLWIPSHVGIRENEMVDRAARNAV 186
           QV + W+  H G RENEM D  AR A 
Sbjct: 115 QVEWRWVKGHAGHRENEMCDELARQAA 141


>sp|A5F633|RNH_VIBC3 Ribonuclease H OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
           Ogawa 395 / O395) GN=rnhA PE=3 SV=1
          Length = 156

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 160 QVSFLWIPSHVGIRENEMVDRAARNAV 186
           QV + W+  H G RENEM D  AR A 
Sbjct: 115 QVEWRWVKGHAGHRENEMCDELARQAA 141


>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
            subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
          Length = 1436

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 19/94 (20%)

Query: 97   ELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKF--NLNDSILISKILLKI--K 152
            EL AI L L    + +          I +DS+ +L  ++   + ++S L+S+I+ ++  K
Sbjct: 1066 ELQAIHLALQDSGLEVN---------IVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 1116

Query: 153  EISSFGSQVSFLWIPSHVGIRENEMVDRAARNAV 186
            E      +V   W+P+H GI  NE VDR     +
Sbjct: 1117 E------KVYLAWVPAHKGIGGNEQVDRLVSTGI 1144


>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
            subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
          Length = 1432

 Score = 33.1 bits (74), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query: 97   ELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKF--NLNDSILISKILLKI--K 152
            EL AI+L L    + +          I +DS+ +L  ++   + ++S L+S+I+ ++  K
Sbjct: 1062 ELQAINLALQDSGLEVN---------IVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 1112

Query: 153  EISSFGSQVSFLWIPSHVGIRENEMVDRAARNAV 186
            E      +V   W+P+H GI  NE VD+     +
Sbjct: 1113 E------KVYLAWVPAHKGIGGNEQVDKLVSQGI 1140


>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
            subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
          Length = 1436

 Score = 33.1 bits (74), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query: 97   ELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKF--NLNDSILISKILLKI--K 152
            EL AI+L L    + +          I +DS+ +L  ++   + ++S L+S+I+ ++  K
Sbjct: 1066 ELQAINLALQDSGLEVN---------IVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 1116

Query: 153  EISSFGSQVSFLWIPSHVGIRENEMVDRAARNAV 186
            E      +V   W+P+H GI  NE VD+     +
Sbjct: 1117 E------KVYLAWVPAHKGIGGNEQVDKLVSQGI 1144


>sp|Q6CEE7|PPN1_YARLI Endopolyphosphatase OS=Yarrowia lipolytica (strain CLIB 122 / E
           150) GN=PPN1 PE=3 SV=1
          Length = 747

 Score = 32.7 bits (73), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 184 NAVNARLTNQYTSSDYKAHFKHIQFKRWEEIWRQNAVLGRQLRQIKTDVRKWKS 237
            A N     +YT++D   +F+H+  + W E+ R   VLG+  R +  +  K KS
Sbjct: 671 GASNFEYVVEYTTNDAPYNFEHLTVRNWVELAR---VLGKNFRDLDLEAEKSKS 721


>sp|A8FUS8|RNH_SHESH Ribonuclease H OS=Shewanella sediminis (strain HAW-EB3) GN=rnhA
           PE=3 SV=1
          Length = 156

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 148 LLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNAR 189
           L K  +++S G ++ + W+  H G  ENE  D  AR A  A+
Sbjct: 105 LWKRLDLASKGHEIDWRWVKGHAGHVENERCDTLAREAAEAK 146


>sp|Q87MG2|RNH_VIBPA Ribonuclease HI OS=Vibrio parahaemolyticus serotype O3:K6 (strain
           RIMD 2210633) GN=rnhA PE=3 SV=1
          Length = 154

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 160 QVSFLWIPSHVGIRENEMVDRAARNAV 186
           QV + W+  H G RENE+ D  AR A 
Sbjct: 115 QVDWHWVKGHAGHRENEICDELARTAA 141


>sp|Q5E3G5|RNH_VIBF1 Ribonuclease H OS=Vibrio fischeri (strain ATCC 700601 / ES114)
           GN=rnhA PE=3 SV=1
          Length = 157

 Score = 32.3 bits (72), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 143 LISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAV 186
           +++  L K  +  S   ++ + W+  H G RENEM D  AR A 
Sbjct: 102 VVNADLWKQLDAESERHKIDWRWVKGHAGHRENEMCDELARTAA 145


>sp|Q115G0|RNH_TRIEI Ribonuclease H OS=Trichodesmium erythraeum (strain IMS101) GN=rnhA
           PE=3 SV=1
          Length = 157

 Score = 32.0 bits (71), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 54  DNKDKILCYTDGSKTNTFTGGAY---LLNETVEQFQLNQIASIYT---AELMAIDLCLNS 107
           + + +I  YTDG+ +     G Y   +L+E   Q +L+    + T    ELMA+ + L  
Sbjct: 3   EKRTEITIYTDGACSGNPGPGGYGIIILSEKKRQ-ELSGGYKLTTNNRMELMAVIVGLEQ 61

Query: 108 I-LMYIQNNFCFKDFVICSDSKS-----SLQALKFNLNDSILISKILLKIKEISSFGSQV 161
           + +  I N +    +++ + +K         + K N  D  +   +  K+ ++ S   QV
Sbjct: 62  LEIPSIVNLYTDSKYIVDAVTKGWAKRWRANSWKRNKKDKAMNPDLWGKLLDLCSK-HQV 120

Query: 162 SFLWIPSHVGIRENEMVDRAARNA 185
            F W+  H G  ENE  D+ A  A
Sbjct: 121 EFSWVRGHSGNIENERCDKLAVKA 144


>sp|O94806|KPCD3_HUMAN Serine/threonine-protein kinase D3 OS=Homo sapiens GN=PRKD3 PE=1
           SV=1
          Length = 890

 Score = 32.0 bits (71), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 238 SNRNIRQEEVVLCRLRIGHCLATHKHLLERKDPPACEFC 276
           S R I  E++V+CR+++ H  A H +      P  C++C
Sbjct: 254 SGRPIWMEKMVMCRVKVPHTFAVHSY----TRPTICQYC 288


>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
            GN=gag-pol PE=3 SV=2
          Length = 1441

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 105  LNSILMYIQNNFCFKDFVICSDSKSSLQALKFNLNDSILISKI--LLKIKEISSFGSQVS 162
            L+++ + ++++  + + V  S     + A +    D  ++ +I  L+K KE      ++ 
Sbjct: 1075 LHAVKLALEDSGSYVNIVTDSQYVVGILASRPTETDHPIVKEIIELMKGKE------KIY 1128

Query: 163  FLWIPSHVGIRENEMVDRAARNAVNARLTNQYTSSDYKAHFKH 205
              W+P+H GI  NE +D+   + +   L  Q      + H K+
Sbjct: 1129 LSWLPAHKGIGGNEQIDKLVSSGIRKVLFLQNIEPAQEEHEKY 1171


>sp|Q9FJJ4|FB298_ARATH F-box protein At5g62510 OS=Arabidopsis thaliana GN=At5g62510 PE=2
           SV=1
          Length = 420

 Score = 32.0 bits (71), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 103 LCLNSILMYIQNNFCFKDFVICSDSKSSLQALKFNLNDSILISKILLKIKEISSFGSQVS 162
           LC+  ++ Y+     F+D V+  D +S     +FN+  + L+    +   +   +G + +
Sbjct: 248 LCIGGVIYYLAFTSMFQDIVVTFDVRSE----EFNIIQAPLVLSAYVDSLDFIEYGGKPA 303

Query: 163 FLWIPSHVGIRENEMVD 179
             +   H  ++EN +VD
Sbjct: 304 IFY---HTSLKENGLVD 317


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,429,338
Number of Sequences: 539616
Number of extensions: 4627450
Number of successful extensions: 13578
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 13564
Number of HSP's gapped (non-prelim): 45
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)