Query psy8376
Match_columns 328
No_of_seqs 235 out of 1633
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:04:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.4E-24 8.2E-29 179.3 13.6 127 56-189 5-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 3.3E-24 1.1E-28 176.8 10.7 120 57-188 3-144 (146)
3 3qio_A GAG-POL polyprotein; RN 99.9 4.7E-24 1.6E-28 176.4 11.6 123 56-188 10-147 (150)
4 1jl1_A Ribonuclease HI; RNAse 99.9 2.4E-23 8.2E-28 173.4 11.7 125 57-190 3-145 (155)
5 2kq2_A Ribonuclease H-related 99.9 1.7E-24 5.7E-29 178.7 4.4 124 56-189 4-138 (147)
6 3p1g_A Xenotropic murine leuke 99.9 2.6E-23 8.7E-28 174.4 10.6 121 57-189 22-157 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 4.3E-23 1.5E-27 172.3 11.4 123 57-188 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 2.6E-23 9E-28 175.0 7.2 126 57-190 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 1.9E-22 6.4E-27 169.0 7.1 126 56-187 5-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 1.5E-20 5.3E-25 153.5 12.0 122 58-189 3-134 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 1.4E-20 4.7E-25 153.4 11.3 122 57-188 2-137 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.8 1E-19 3.6E-24 150.2 11.1 120 59-189 2-135 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1E-19 3.4E-24 180.8 10.8 117 56-186 434-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 2.1E-19 7.1E-24 178.6 8.8 116 56-185 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 1.2E-13 4.3E-18 112.3 6.1 115 56-180 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 7.1E-12 2.4E-16 100.3 7.5 96 56-158 3-113 (134)
17 1rw3_A POL polyprotein; RNA an 74.7 1.1 3.9E-05 42.5 1.9 73 56-136 344-427 (455)
18 2zd1_B P51 RT; P51/P66, hetero 60.5 14 0.00047 34.6 6.2 72 56-131 322-400 (428)
19 3alr_A Nanos protein; zinc-fin 29.4 22 0.00077 26.2 1.6 25 271-296 72-96 (106)
20 3dmo_A Cytidine deaminase; str 27.1 1.6E+02 0.0054 22.8 6.3 78 71-162 33-114 (138)
21 2lsn_A Reverse transcriptase; 25.7 53 0.0018 26.3 3.4 21 90-114 49-69 (165)
22 2fr5_A Cytidine deaminase; tet 24.8 87 0.003 24.5 4.4 53 70-128 36-92 (146)
23 2zd1_A Reverse transcriptase/r 23.3 1.4E+02 0.0049 28.6 6.6 74 57-135 325-406 (557)
24 2bhu_A Maltooligosyltrehalose 20.7 90 0.0031 30.4 4.6 35 143-177 191-225 (602)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=2.4e-24 Score=179.27 Aligned_cols=127 Identities=18% Similarity=0.282 Sum_probs=95.2
Q ss_pred CCcEEEEecCCCCCCC-----ceEEEEEcCe---eeeccCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCcceEEEEec
Q psy8376 56 KDKILCYTDGSKTNTF-----TGGAYLLNET---VEQFQLNQIASIYTAELMAIDLCLNSILMYIQN-NFCFKDFVICSD 126 (328)
Q Consensus 56 ~~~~~iytDgS~~~~~-----~G~g~~~~~~---~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~~i~I~sD 126 (328)
.+.++||||||+..++ +|+|+++.+. .....+...+|++.||+.|++.|| +.+.. + ..+|.|+||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL----~~~~~~~--~~~v~i~tD 78 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAI----EQAKTQN--INKLVLYTN 78 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHH----HHHHHTT--CCEEEEEES
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHH----HHHHhCC--CceEEEEEC
Confidence 4678999999987432 7899888431 233455557899999999999999 55544 4 689999999
Q ss_pred CHHHHHHHHccC---------CCH--H-HHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCC
Q psy8376 127 SKSSLQALKFNL---------NDS--I-LISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNAR 189 (328)
Q Consensus 127 s~~ai~~l~~~~---------~~~--~-~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 189 (328)
|++|++.|.++. ... + ....+++.+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 999999998741 111 1 12334444444444 45799999999999999999999999998764
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.91 E-value=3.3e-24 Score=176.80 Aligned_cols=120 Identities=24% Similarity=0.217 Sum_probs=88.9
Q ss_pred CcEEEEecCCCCCC--CceEEEEEc--Ceee-eccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHH
Q psy8376 57 DKILCYTDGSKTNT--FTGGAYLLN--ETVE-QFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSL 131 (328)
Q Consensus 57 ~~~~iytDgS~~~~--~~G~g~~~~--~~~~-~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai 131 (328)
..++||||||+..+ .+|+|+++. +... ..+....+|++.||+.|++.|| +.+.. ..++.|+|||++|+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL----~~~~~---~~~v~I~tDS~~vi 75 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGL----EALKE---PARVQLYSDSAYLV 75 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHH----HTCSS---CCEEEEEESCHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHH----HhcCc---cCcEEEEeChHHHH
Confidence 56899999998853 389998872 2221 1112236899999999999999 65543 67999999999999
Q ss_pred HHHHc-cC---------CC-------HHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhC
Q psy8376 132 QALKF-NL---------ND-------SILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNA 188 (328)
Q Consensus 132 ~~l~~-~~---------~~-------~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 188 (328)
+.|++ +. .. .++++.|.. +... ..|.|.|||||+|+++||.||+|||+|+..
T Consensus 76 ~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~----~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 76 NAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILK----LTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHH----HHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHH----HHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 99987 21 01 134444444 3333 479999999999999999999999999864
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.91 E-value=4.7e-24 Score=176.44 Aligned_cols=123 Identities=23% Similarity=0.284 Sum_probs=92.6
Q ss_pred CCcEEEEecCCCCC--CCceEEEEEcC-eeeeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHHH
Q psy8376 56 KDKILCYTDGSKTN--TFTGGAYLLNE-TVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQ 132 (328)
Q Consensus 56 ~~~~~iytDgS~~~--~~~G~g~~~~~-~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai~ 132 (328)
.+.++||||||+.. +..|+|+++.+ ......+ ..+|++.||+.|++.|| +.+ ..++.|+|||++|++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL----~~~-----~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLAL----QDS-----GLEVNIVTDSQYALG 79 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHH----HHS-----CSEEEEEESCHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHH----HhC-----CCcEEEEeCcHHHHH
Confidence 56899999999874 33788988833 2223333 47899999999999999 542 578999999999999
Q ss_pred HHHccC-----------CCHHH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhC
Q psy8376 133 ALKFNL-----------NDSIL-ISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNA 188 (328)
Q Consensus 133 ~l~~~~-----------~~~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 188 (328)
+|+++. ...++ -.++++.+..+..++..|.|.|||||+|++|||.||+||++|+..
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 998762 11111 234444443444567899999999999999999999999999865
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.89 E-value=2.4e-23 Score=173.36 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=92.8
Q ss_pred CcEEEEecCCCCCC--CceEEEEEc--Cee--eeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHH
Q psy8376 57 DKILCYTDGSKTNT--FTGGAYLLN--ETV--EQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSS 130 (328)
Q Consensus 57 ~~~~iytDgS~~~~--~~G~g~~~~--~~~--~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~a 130 (328)
..++||||||+..+ .+|+|+++. +.. .+..+ ..+|++.||+.|++.|| +.+.. ..++.|+|||++|
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL----~~~~~---~~~v~I~tDS~~v 74 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVAL----EALKE---HAEVILSTDSQYV 74 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHH----HTCCS---CCEEEEEECCHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHH----HHhCc---CCcEEEEeCHHHH
Confidence 46889999999843 379998883 222 12223 46799999999999999 66543 5799999999999
Q ss_pred HHHHHcc---------CCCH--HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCCC
Q psy8376 131 LQALKFN---------LNDS--IL-ISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNARL 190 (328)
Q Consensus 131 i~~l~~~---------~~~~--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~ 190 (328)
++.|+++ ...+ ++ ...+++.+..+.. ...|.|.|||||+|++|||.||+||++|+..+.
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999973 1111 11 1233444444544 368999999999999999999999999998764
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.89 E-value=1.7e-24 Score=178.74 Aligned_cols=124 Identities=19% Similarity=0.122 Sum_probs=94.6
Q ss_pred CCcEEEEecCCCCCCCceEEEEEc--Cee--eec-cC--CC--CCchHHHHHHHHHHHHHHHHHHHHh-cCCcceEEEEe
Q psy8376 56 KDKILCYTDGSKTNTFTGGAYLLN--ETV--EQF-QL--NQ--IASIYTAELMAIDLCLNSILMYIQN-NFCFKDFVICS 125 (328)
Q Consensus 56 ~~~~~iytDgS~~~~~~G~g~~~~--~~~--~~~-~l--~~--~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~~i~I~s 125 (328)
++.+.||||||+..+.+|+|+++. +.. ... +. +. .+||+.||+.|++.|| +.+.. + . +|.|+|
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL----~~a~~~~--~-~v~I~t 76 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAV----KKASQLG--V-KIRILH 76 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHH----HHHHHHT--C-CCCBSS
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHH----HHHHHCC--C-eEEEEE
Confidence 467899999999997799999882 222 222 22 22 3699999999999999 54433 4 4 999999
Q ss_pred cCHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCC
Q psy8376 126 DSKSSLQALKFNLN-DSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNAR 189 (328)
Q Consensus 126 Ds~~ai~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 189 (328)
||+.+.+.+.+.+. ..+....+.+.+..+.. .|.|.|||||+|++|||.||+|||+|+...
T Consensus 77 DS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 77 DYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 99988887776554 34444555554445433 899999999999999999999999999876
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.89 E-value=2.6e-23 Score=174.45 Aligned_cols=121 Identities=24% Similarity=0.246 Sum_probs=91.7
Q ss_pred CcEEEEecCCCC--CCCceEEEEE--cCee-eeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHH
Q psy8376 57 DKILCYTDGSKT--NTFTGGAYLL--NETV-EQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSL 131 (328)
Q Consensus 57 ~~~~iytDgS~~--~~~~G~g~~~--~~~~-~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai 131 (328)
..+.||||||+. +|.+|+|+++ .+.. ...++...+|+++||+.|++.|| +.+ . ..++.|+|||++|+
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL----~~~--~--~~~v~I~tDS~~vi 93 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQAL----KMA--E--GKKLNVYTDSRYAF 93 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHH----HHT--B--TSEEEEEECCHHHH
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHH----HHc--c--CceEEEEEchHHHH
Confidence 358999999997 4557888876 2222 22245678899999999999999 665 2 67999999999999
Q ss_pred HHHHccCCCH-----HHHHHHHHHHHHHHhcCCeEEEEEecCCCC-----CccchHHhHHHHHHhhCC
Q psy8376 132 QALKFNLNDS-----ILISKILLKIKEISSFGSQVSFLWIPSHVG-----IRENEMVDRAARNAVNAR 189 (328)
Q Consensus 132 ~~l~~~~~~~-----~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~g-----i~gNe~AD~lAk~a~~~~ 189 (328)
+.+-...... .+++++.. .+ ..+..|.|.|||||+| +.|||.||+|||+|+..+
T Consensus 94 ~~iw~~~~g~~v~n~dl~~~l~~---~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 94 ATAHVHSEGREIKNKNEILALLK---AL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHSCCCSCCCSSHHHHHHHHH---HT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcccCHHHHHHHHH---HH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 9983211111 23444433 23 3578999999999999 999999999999999765
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=4.3e-23 Score=172.34 Aligned_cols=123 Identities=22% Similarity=0.259 Sum_probs=90.9
Q ss_pred CcEEEEecCCCCC--CCceEEEEEc--Cee--eeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHH
Q psy8376 57 DKILCYTDGSKTN--TFTGGAYLLN--ETV--EQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSS 130 (328)
Q Consensus 57 ~~~~iytDgS~~~--~~~G~g~~~~--~~~--~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~a 130 (328)
..++||||||+.. +.+|+|+++. +.. ....+ ..+|++.||+.|++.|| +.+.. ..+|.|+|||++|
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL----~~~~~---~~~v~I~tDS~~v 76 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVAL----EALKE---PCKIILTSDSQYM 76 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHH----HTCSS---CCEEEEEECCHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHH----HHhcc---CCeEEEEeCHHHH
Confidence 4689999999984 3379998882 222 12223 35799999999999999 65543 4799999999999
Q ss_pred HHHHHcc--------C-CCH--HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhC
Q psy8376 131 LQALKFN--------L-NDS--IL-ISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNA 188 (328)
Q Consensus 131 i~~l~~~--------~-~~~--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 188 (328)
++.|.++ + ... ++ ..++++.+..+.. ...|.|.|||||+|++|||.||+||++|+..
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999882 2 111 11 1233333444444 3589999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.88 E-value=2.6e-23 Score=174.98 Aligned_cols=126 Identities=21% Similarity=0.156 Sum_probs=92.5
Q ss_pred CcEEEEecCCCCCC--CceEEEEEc--Ceeee-ccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHH
Q psy8376 57 DKILCYTDGSKTNT--FTGGAYLLN--ETVEQ-FQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSL 131 (328)
Q Consensus 57 ~~~~iytDgS~~~~--~~G~g~~~~--~~~~~-~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai 131 (328)
..++||||||+..+ .+|+|+++. +.... .+....+|++.||+.|++.|| +.+.. ..+|.|+|||++|+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL----~~~~~---~~~v~I~tDS~~vi 79 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGL----KALKE---PCEVDLYTDSHYLK 79 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHH----HSCCS---CCEEEEECCCHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHH----HHhcc---CCeEEEEeChHHHH
Confidence 46789999999843 379999883 21111 111236799999999999999 65543 45899999999999
Q ss_pred HHHHc----------cCCCH--HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCCC
Q psy8376 132 QALKF----------NLNDS--IL-ISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNARL 190 (328)
Q Consensus 132 ~~l~~----------~~~~~--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~ 190 (328)
+.|.+ +...+ ++ ..++++.+..+... ..|.|.|||||+|+++||.||+|||+|+....
T Consensus 80 ~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 80 KAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 99998 22111 11 12344444444443 59999999999999999999999999998764
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.86 E-value=1.9e-22 Score=169.00 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=86.8
Q ss_pred CCcEEEEecCCCCC--CC-----ceEEEEEc--C----eeeeccC-CCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceE
Q psy8376 56 KDKILCYTDGSKTN--TF-----TGGAYLLN--E----TVEQFQL-NQIASIYTAELMAIDLCLNSILMYIQNNFCFKDF 121 (328)
Q Consensus 56 ~~~~~iytDgS~~~--~~-----~G~g~~~~--~----~~~~~~l-~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i 121 (328)
...++||||||+.. |. +|+|+++. + ....+.. ....+++.||+.|+..|| +.+... ..+|
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al----~~al~~--~~~v 78 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFAC----KKALKI--PGPV 78 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHH----HHHHHS--SSCE
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHH----HHHhcC--CCeE
Confidence 35688999999873 22 79999872 2 1122222 245677788888888887 544433 5679
Q ss_pred EEEecCHHHHHHHHccC---------CC--HHH-HHHHHHHHHHHHhcCCeEEEEEecCCCCC------ccchHHhHHHH
Q psy8376 122 VICSDSKSSLQALKFNL---------ND--SIL-ISKILLKIKEISSFGSQVSFLWIPSHVGI------RENEMVDRAAR 183 (328)
Q Consensus 122 ~I~sDs~~ai~~l~~~~---------~~--~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi------~gNe~AD~lAk 183 (328)
.|+|||++|+++|..|. .. .++ -.++++.+..+......|.|.|||||+|+ +|||.||+||+
T Consensus 79 ~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~ 158 (165)
T 2lsn_A 79 LVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLAT 158 (165)
T ss_dssp EEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHH
T ss_pred EEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHH
Confidence 99999999999997531 11 111 12344444444445568999999999995 58999999999
Q ss_pred HHhh
Q psy8376 184 NAVN 187 (328)
Q Consensus 184 ~a~~ 187 (328)
+|+.
T Consensus 159 ~gA~ 162 (165)
T 2lsn_A 159 QGSY 162 (165)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 9974
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.5e-20 Score=153.47 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=95.1
Q ss_pred cEEEEecCCCCCC--CceEEEEEcC----e-e-eeccCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCcceEEEEecCH
Q psy8376 58 KILCYTDGSKTNT--FTGGAYLLNE----T-V-EQFQLNQIASIYTAELMAIDLCLNSILMYIQN-NFCFKDFVICSDSK 128 (328)
Q Consensus 58 ~~~iytDgS~~~~--~~G~g~~~~~----~-~-~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~~i~I~sDs~ 128 (328)
.++||||||+..+ .+|+|+++.+ . . ........+|++.||+.|++.|| +.+.. + ..++.|+|||+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL----~~a~~~~--~~~v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGL----DDAVKLG--ATEAAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHH----HHHHHHT--CSEEEEEESCH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHH----HHHHHCC--CceEEEEeChH
Confidence 5799999998843 4899988822 1 1 11122237899999999999999 55444 5 78999999999
Q ss_pred HHHHHHHccC-CCHHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCC
Q psy8376 129 SSLQALKFNL-NDSILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNAR 189 (328)
Q Consensus 129 ~ai~~l~~~~-~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 189 (328)
++++.+++.+ ..++.+..+++.+..+..++..|.|.||| .++|+.||+||++|+...
T Consensus 77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDAA 134 (141)
T ss_dssp HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHHh
Confidence 9999999854 34455556667777788778999999999 489999999999998653
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=1.4e-20 Score=153.36 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=91.6
Q ss_pred CcEEEEecCCCCCC--CceEEEEEcC----ee-eeccCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCcc----eEEEE
Q psy8376 57 DKILCYTDGSKTNT--FTGGAYLLNE----TV-EQFQLNQIASIYTAELMAIDLCLNSILMYIQN-NFCFK----DFVIC 124 (328)
Q Consensus 57 ~~~~iytDgS~~~~--~~G~g~~~~~----~~-~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~----~i~I~ 124 (328)
..++||||||+..+ .+|+|+++.+ .. ...+....+|++.||+.|++.|| +.+.. + .. ++.|+
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL----~~a~~~~--~~~~~~~v~i~ 75 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRAL----EDLQMFG--DKLVDMEVEVR 75 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHH----HHHGGGG--GGGTTCEEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHH----HHHHHcC--CCCCCceEEEE
Confidence 35899999999743 4899998832 11 11122235799999999999999 65554 4 55 99999
Q ss_pred ecCHHHHHHHHccCC-CHHHHHHHHHHHHHH-HhcCCeEEEEEecCCCCCccchHHhHHHHHHhhC
Q psy8376 125 SDSKSSLQALKFNLN-DSILISKILLKIKEI-SSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNA 188 (328)
Q Consensus 125 sDs~~ai~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 188 (328)
|||+++++.+++++. .++-+..++..+..+ .+++..|.|.||| .++||.||+|||+|+..
T Consensus 76 tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 76 MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp ESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred eChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 999999999998664 333333455555566 6666799999999 58999999999999864
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.81 E-value=1e-19 Score=150.23 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=88.0
Q ss_pred EEEEecCCCCC---CCceE-EEEEcC---eeeec--cCC---CCCchHHHHHHHHHHHHHHHHHHHHh-cCCcceEEEEe
Q psy8376 59 ILCYTDGSKTN---TFTGG-AYLLNE---TVEQF--QLN---QIASIYTAELMAIDLCLNSILMYIQN-NFCFKDFVICS 125 (328)
Q Consensus 59 ~~iytDgS~~~---~~~G~-g~~~~~---~~~~~--~l~---~~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~~i~I~s 125 (328)
++||||||+.+ +.+|+ |+++.+ ....+ .++ ..+|++.||+.|++.|| +.+.. + ..++.|+|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL----~~a~~~g--~~~v~i~t 75 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLM----ETMLRLG--ISSPIIKG 75 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHH----HHHHHHT--CCSCEEEE
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHH----HHHHHcC--CCEEEEEe
Confidence 68999999872 45785 988732 11112 222 47899999999999999 54444 4 68999999
Q ss_pred cCHHHHHHHHccCCC-HHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHhhCC
Q psy8376 126 DSKSSLQALKFNLND-SILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAVNAR 189 (328)
Q Consensus 126 Ds~~ai~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 189 (328)
||+++++.+++++.. ++....+++.+..+.+.. .|.|.|||+ ++|+.||+||++|+...
T Consensus 76 DS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 76 DSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp SCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999999999997543 233334444444444444 599999998 59999999999998764
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.80 E-value=1e-19 Score=180.80 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=91.6
Q ss_pred CCcEEEEecCCCCCC--CceEEEEEc-CeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHHH
Q psy8376 56 KDKILCYTDGSKTNT--FTGGAYLLN-ETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQ 132 (328)
Q Consensus 56 ~~~~~iytDgS~~~~--~~G~g~~~~-~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai~ 132 (328)
.+.+.||||||+..+ .+|+|+++. +......+ ..+||+.||+.|++.|| +. + ..++.|+|||++|++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL----~~---~--~~~v~I~tDS~~v~~ 503 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMAL----TD---S--GPKVNIIVDSQYVMG 503 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHH----HT---S--CSEEEEEESCHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHH----Hc---C--CCeEEEEEehHHHHH
Confidence 457999999998843 378888883 22222223 46799999999999999 55 3 789999999999999
Q ss_pred HHHccCCC--HHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHHh
Q psy8376 133 ALKFNLND--SILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNAV 186 (328)
Q Consensus 133 ~l~~~~~~--~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~ 186 (328)
+++++... .++.+++.+ +...+..|.|.|||||+|++|||.||+||++|+
T Consensus 504 ~i~~~~~~~~~~l~~~~~~----~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 504 IVASQPTESESKIVNQIIE----EMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHTCCSEESCHHHHHHHH----HHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHhcccccccHHHHHHHHH----HhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 99987643 256665554 222367899999999999999999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.78 E-value=2.1e-19 Score=178.61 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=89.0
Q ss_pred CCcEEEEecCCCCC-C-CceEEEEEc-CeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHHH
Q psy8376 56 KDKILCYTDGSKTN-T-FTGGAYLLN-ETVEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQ 132 (328)
Q Consensus 56 ~~~~~iytDgS~~~-~-~~G~g~~~~-~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai~ 132 (328)
.+.+.||||||+.. + .+|+|+++. +.....+. ..+||+.||+.|++.|| +.+ ..++.|+|||++|++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL----~~~-----~~~v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLAL----QDS-----GLEVNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHH----HHS-----CSEEEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHH----HhC-----CCcEEEEeChHHHHH
Confidence 45699999999873 3 378888883 32233333 46899999999999999 554 568999999999999
Q ss_pred HHHccCCCH--HHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHHHH
Q psy8376 133 ALKFNLNDS--ILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDRAARNA 185 (328)
Q Consensus 133 ~l~~~~~~~--~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a 185 (328)
+++++...+ ++.+++.+ .+.+ ...|.|.|||||+|++|||.||+||++|
T Consensus 507 ~i~~~~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 507 IIQAQPDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHTTCCSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHhcCCccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 999987652 56665554 3333 4689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.43 E-value=1.2e-13 Score=112.34 Aligned_cols=115 Identities=13% Similarity=0.009 Sum_probs=82.7
Q ss_pred CCcEEEEecCCCCC--CCceEEEEEcC--ee--eeccCCCCCchHHHHHHHHHHHHHHHHHHHHh-cCCcceEEEEecCH
Q psy8376 56 KDKILCYTDGSKTN--TFTGGAYLLNE--TV--EQFQLNQIASIYTAELMAIDLCLNSILMYIQN-NFCFKDFVICSDSK 128 (328)
Q Consensus 56 ~~~~~iytDgS~~~--~~~G~g~~~~~--~~--~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~-~~~~~~i~I~sDs~ 128 (328)
...+.||||||+.. |.+|+|+++.. .. .+..++ .+|++.||++|++.|| +.+.. + . ++.|+|||+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL----~~~~~~~--~-~v~i~tDS~ 80 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGL----RYLKERN--S-RKPIYSNSQ 80 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHH----HHHHHTT--C-CCCEEESCH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHH----HHHHhCC--C-eEEEEEehH
Confidence 45678999999873 44899999842 11 112222 5799999999999999 55554 3 4 999999999
Q ss_pred HHHHHHHccCCC---------HHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhH
Q psy8376 129 SSLQALKFNLND---------SILISKILLKIKEISSFGSQVSFLWIPSHVGIRENEMVDR 180 (328)
Q Consensus 129 ~ai~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~ 180 (328)
+|++.+++...+ .++.+.|......+... .++...|+-|++.-||..||.
T Consensus 81 ~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 81 TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 999999987621 13566665555556554 445556777888889999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.27 E-value=7.1e-12 Score=100.26 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCCC--CCceEEEEE-cC-e--eeeccCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHH
Q psy8376 56 KDKILCYTDGSKTN--TFTGGAYLL-NE-T--VEQFQLNQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKS 129 (328)
Q Consensus 56 ~~~~~iytDgS~~~--~~~G~g~~~-~~-~--~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ 129 (328)
+....||||||+.. |.+|+|+|+ .+ . .....+ ..+||++||++|++.|| +.+... ..++.|+|||++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL----~~l~~~--~~~v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGL----RYLKER--NSRKPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHH----HHHHHT--TCCCCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHH----HHHHhC--CCCEEEEcchHH
Confidence 56678999999883 337886666 32 1 122222 26899999999999999 555441 224899999999
Q ss_pred HHHHHHccCCC--------H-HHHHHHHHHHHHHHhcC
Q psy8376 130 SLQALKFNLND--------S-ILISKILLKIKEISSFG 158 (328)
Q Consensus 130 ai~~l~~~~~~--------~-~~~~~i~~~~~~l~~~~ 158 (328)
|++.|.++.-+ + .+.+.|..+...|....
T Consensus 76 Vi~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~ 113 (134)
T 4htu_A 76 AIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHT 113 (134)
T ss_dssp HHHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcccCCCCCccCHHHHHHHHHHHHHHHhCC
Confidence 99999975321 1 46666666555565543
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=74.71 E-value=1.1 Score=42.47 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=43.8
Q ss_pred CCcEEEEecCCCCCCCceEEEEEcC-----eeeec---cC---CCCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEE
Q psy8376 56 KDKILCYTDGSKTNTFTGGAYLLNE-----TVEQF---QL---NQIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVIC 124 (328)
Q Consensus 56 ~~~~~iytDgS~~~~~~G~g~~~~~-----~~~~~---~l---~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~ 124 (328)
...+.+|||+|.. ++| |++... ....+ .+ ....+++..|++||..|+ +..........+.|+
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~----~~~~~yl~g~~~~v~ 416 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLT----KDAGKLTMGQPLVIK 416 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHH----HHHHGGGCSSCEEEE
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHH----HHHHHHcCCCcEEEE
Confidence 3457899999843 233 333311 01111 12 235677899999999999 443331126789999
Q ss_pred ecCHHHHHHHHc
Q psy8376 125 SDSKSSLQALKF 136 (328)
Q Consensus 125 sDs~~ai~~l~~ 136 (328)
||+. ++..+.+
T Consensus 417 tDh~-~~~~l~~ 427 (455)
T 1rw3_A 417 APHA-VEALVKQ 427 (455)
T ss_dssp CSSC-TTTTSSS
T ss_pred ecCh-HHHHhCC
Confidence 9996 5554443
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=60.51 E-value=14 Score=34.65 Aligned_cols=72 Identities=6% Similarity=-0.082 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCCCCCceEEEEEcC---e---eeeccCCCCCchHHHHHHH-HHHHHHHHHHHHHhcCCcceEEEEecCH
Q psy8376 56 KDKILCYTDGSKTNTFTGGAYLLNE---T---VEQFQLNQIASIYTAELMA-IDLCLNSILMYIQNNFCFKDFVICSDSK 128 (328)
Q Consensus 56 ~~~~~iytDgS~~~~~~G~g~~~~~---~---~~~~~l~~~~s~~~AEl~A-i~~al~~~~~~~~~~~~~~~i~I~sDs~ 128 (328)
...+.++||+|.. + ++|+++.+ . ...+.-......+.-|++| |..||+.-.-++. |.....++++||.+
T Consensus 322 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~-G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIW-GKTPKFKLPIQKET 397 (428)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHH-SSCCEEEESSCHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEE-CCCCcEECCccHHH
Confidence 3468999999843 2 33544421 1 1222222334455667777 9999944432332 32246778899997
Q ss_pred HHH
Q psy8376 129 SSL 131 (328)
Q Consensus 129 ~ai 131 (328)
...
T Consensus 398 ~~~ 400 (428)
T 2zd1_B 398 WET 400 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 19
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=29.41 E-value=22 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred CccccccccccccchhhcccccchHH
Q psy8376 271 PACEFCGQTPVYLNHWLTECHALGNL 296 (328)
Q Consensus 271 p~C~~Cg~~~etv~Hil~~Cp~~~~~ 296 (328)
-.|+.|| +..+-.|.+-.||.....
T Consensus 72 Y~CpiCG-ATGd~AHT~kYCP~~~~~ 96 (106)
T 3alr_A 72 YKCPLCG-ATGAKAHTKRFCPMVDKN 96 (106)
T ss_dssp CCCTTTC-CCGGGCCCGGGCTTCGGG
T ss_pred ccCCCCC-CcCCcccceecCCCCCCc
Confidence 3699999 889999999999987644
No 20
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=27.09 E-value=1.6e+02 Score=22.82 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=42.9
Q ss_pred CceEEEEEcCeeeeccC--C--CCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCHHHHHHHHccCCCHHHHHH
Q psy8376 71 FTGGAYLLNETVEQFQL--N--QIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSKSSLQALKFNLNDSILISK 146 (328)
Q Consensus 71 ~~G~g~~~~~~~~~~~l--~--~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ai~~l~~~~~~~~~~~~ 146 (328)
.||+++...+-....+. . ......-||-.||..|+ ..-........|.|.+|+. .+..+-+..++
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Av----s~G~~~~~i~aiavv~~~~-------~~~~PCG~CRQ 101 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSAL----AAGYRPGEFAAIAVVGETH-------GPIAPCGACRQ 101 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHH----HTTCCTTCEEEEEEEESCS-------SSCCCCHHHHH
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHH----HcCCCcccEEEEEEEcCCC-------CccCCCHHHHH
Confidence 48888877443322221 1 12233579999999999 3211101367888998873 23344455655
Q ss_pred HHHHHHHHHhcCCeEE
Q psy8376 147 ILLKIKEISSFGSQVS 162 (328)
Q Consensus 147 i~~~~~~l~~~~~~v~ 162 (328)
... ++......|.
T Consensus 102 ~l~---Ef~~~~~~V~ 114 (138)
T 3dmo_A 102 VMI---ELGKPTLEVV 114 (138)
T ss_dssp HHH---HHHCTTCEEE
T ss_pred HHH---HhCCCCcEEE
Confidence 544 5543344443
No 21
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=25.73 E-value=53 Score=26.28 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=17.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Q psy8376 90 IASIYTAELMAIDLCLNSILMYIQN 114 (328)
Q Consensus 90 ~~s~~~AEl~Ai~~al~~~~~~~~~ 114 (328)
.++++++|+.|.+.|| +.+..
T Consensus 49 ~~tnn~te~~Aei~Al----~~al~ 69 (165)
T 2lsn_A 49 IPLGNHTAQMAEIAAV----EFACK 69 (165)
T ss_dssp EEESSCCHHHHHHHHH----HHHHH
T ss_pred CCchHHHHHHHHHHHH----HHHHH
Confidence 3578999999999999 76543
No 22
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=24.75 E-value=87 Score=24.54 Aligned_cols=53 Identities=21% Similarity=0.034 Sum_probs=32.2
Q ss_pred CCceEEEEEcCeeeeccC--C--CCCchHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEecCH
Q psy8376 70 TFTGGAYLLNETVEQFQL--N--QIASIYTAELMAIDLCLNSILMYIQNNFCFKDFVICSDSK 128 (328)
Q Consensus 70 ~~~G~g~~~~~~~~~~~l--~--~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~ 128 (328)
..+|++++..+.....+. . ......-||..||..|. .. .. .....+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~----~~-G~-~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAI----SE-GY-KDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHH----HT-TC-CCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHH----hC-CC-CceEEEEEEeCCC
Confidence 358888876332221221 1 12233679999999999 43 11 2278899999863
No 23
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=23.29 E-value=1.4e+02 Score=28.55 Aligned_cols=74 Identities=5% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CcEEEEecCCCCCCCceEEEEEcC---e---eeeccCCCCCchHHHHHHH-HHHHHHHHHHHHHhcCCcceEEE-EecCH
Q psy8376 57 DKILCYTDGSKTNTFTGGAYLLNE---T---VEQFQLNQIASIYTAELMA-IDLCLNSILMYIQNNFCFKDFVI-CSDSK 128 (328)
Q Consensus 57 ~~~~iytDgS~~~~~~G~g~~~~~---~---~~~~~l~~~~s~~~AEl~A-i~~al~~~~~~~~~~~~~~~i~I-~sDs~ 128 (328)
..+.+|||+|.. + .+|+++.+ . ...+.-......++-|++| +..+|+.-.-++... ...+.| ++|++
T Consensus 325 ~~~~l~~das~~--g-~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~--~p~~~vp~~~~~ 399 (557)
T 2zd1_A 325 KDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGK--TPKFKLPIQKET 399 (557)
T ss_dssp SCCEEEEEEEET--T-EEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSS--CCEEEESBCHHH
T ss_pred CCEEEEEecCCC--C-cEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCC--CCCEECCCcHHH
Confidence 467899999853 1 23555422 1 1223333445567779988 999984432222221 234555 78887
Q ss_pred HHHHHHH
Q psy8376 129 SSLQALK 135 (328)
Q Consensus 129 ~ai~~l~ 135 (328)
.......
T Consensus 400 ~~~~~~~ 406 (557)
T 2zd1_A 400 WETWWTE 406 (557)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 5544433
No 24
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=20.69 E-value=90 Score=30.42 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchH
Q psy8376 143 LISKILLKIKEISSFGSQVSFLWIPSHVGIRENEM 177 (328)
Q Consensus 143 ~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~ 177 (328)
...++.+.+..+.++|..|.+-+|+.|++..+|-.
T Consensus 191 t~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~ 225 (602)
T 2bhu_A 191 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYL 225 (602)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccccccCCccc
Confidence 36788888889999999999999999999877743
Done!