Query psy8378
Match_columns 230
No_of_seqs 219 out of 1407
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:06:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03542 Tuberin: Tuberin; In 100.0 7.1E-45 1.5E-49 336.3 9.7 128 2-135 227-355 (356)
2 KOG0435|consensus 99.9 4.9E-29 1.1E-33 242.1 3.5 159 62-228 339-524 (876)
3 PLN02563 aminoacyl-tRNA ligase 99.9 6.9E-27 1.5E-31 238.9 6.9 154 65-227 414-612 (963)
4 TIGR00396 leuS_bact leucyl-tRN 99.9 1.1E-26 2.5E-31 235.0 7.2 147 64-216 326-508 (842)
5 KOG3687|consensus 99.9 1.4E-25 3E-30 223.6 5.1 133 2-140 728-860 (1697)
6 PRK00390 leuS leucyl-tRNA synt 99.9 1.1E-23 2.4E-28 212.5 6.6 147 65-217 329-512 (805)
7 COG0495 LeuS Leucyl-tRNA synth 99.8 1.2E-20 2.5E-25 189.5 5.7 166 53-228 322-523 (814)
8 COG0060 IleS Isoleucyl-tRNA sy 99.5 4.6E-15 9.9E-20 151.0 0.4 91 125-217 454-551 (933)
9 PRK05743 ileS isoleucyl-tRNA s 99.5 8.1E-15 1.7E-19 150.2 1.0 81 125-208 451-537 (912)
10 PRK13208 valS valyl-tRNA synth 99.4 1.2E-13 2.7E-18 139.6 5.9 79 127-214 397-478 (800)
11 PTZ00419 valyl-tRNA synthetase 99.3 3.5E-13 7.7E-18 139.2 1.7 96 124-222 441-540 (995)
12 COG0525 ValS Valyl-tRNA synthe 99.3 3.4E-13 7.4E-18 136.4 1.1 77 123-216 394-472 (877)
13 PRK06039 ileS isoleucyl-tRNA s 99.3 5.8E-13 1.3E-17 137.4 1.5 94 124-222 442-547 (975)
14 PTZ00427 isoleucine-tRNA ligas 99.3 9.3E-13 2E-17 138.1 1.9 95 124-222 567-675 (1205)
15 PLN02882 aminoacyl-tRNA ligase 99.3 1.2E-12 2.7E-17 137.0 2.4 86 123-213 462-557 (1159)
16 PRK14900 valS valyl-tRNA synth 99.3 1.1E-12 2.5E-17 136.2 1.5 71 124-215 412-484 (1052)
17 KOG0433|consensus 99.2 2.9E-13 6.4E-18 133.8 -4.2 82 125-208 466-560 (937)
18 PLN02381 valyl-tRNA synthetase 99.2 2.3E-12 5E-17 134.0 2.1 86 124-222 511-610 (1066)
19 PRK13804 ileS isoleucyl-tRNA s 99.2 1.2E-12 2.6E-17 135.0 -0.6 73 127-202 489-567 (961)
20 TIGR00392 ileS isoleucyl-tRNA 99.2 3.6E-12 7.8E-17 129.9 1.4 84 125-213 460-555 (861)
21 PLN02843 isoleucyl-tRNA synthe 99.2 2.4E-12 5.3E-17 132.8 -0.7 76 125-202 466-548 (974)
22 PF00133 tRNA-synt_1: tRNA syn 99.2 2.5E-13 5.3E-18 133.7 -8.9 87 124-213 413-504 (601)
23 TIGR00422 valS valyl-tRNA synt 99.1 1.8E-11 3.8E-16 124.9 1.9 74 124-215 395-471 (861)
24 cd00817 ValRS_core catalytic c 99.1 3.5E-11 7.6E-16 112.5 2.6 78 125-215 209-289 (382)
25 PLN02943 aminoacyl-tRNA ligase 99.0 2.5E-11 5.5E-16 125.2 -0.6 74 124-213 447-526 (958)
26 PRK05729 valS valyl-tRNA synth 99.0 1.7E-10 3.6E-15 118.1 2.8 69 124-216 397-467 (874)
27 KOG0434|consensus 98.9 1.6E-10 3.5E-15 114.2 -0.3 99 111-216 444-547 (1070)
28 KOG0432|consensus 98.3 6.7E-08 1.5E-12 97.7 -2.6 74 123-216 452-540 (995)
29 cd00818 IleRS_core catalytic c 98.1 8.5E-07 1.8E-11 81.9 1.7 52 125-212 189-242 (338)
30 KOG3687|consensus 97.6 1.1E-05 2.3E-10 83.0 -0.5 128 4-135 1020-1203(1697)
31 PLN02959 aminoacyl-tRNA ligase 97.4 2E-05 4.4E-10 82.9 -2.5 17 191-207 635-652 (1084)
32 PF13603 tRNA-synt_1_2: Leucyl 96.5 0.0017 3.7E-08 55.7 2.3 89 28-129 81-184 (185)
33 cd00668 Ile_Leu_Val_MetRS_core 95.7 0.0034 7.4E-08 57.0 0.5 19 192-210 195-213 (312)
34 PRK12300 leuS leucyl-tRNA synt 95.5 0.0066 1.4E-07 63.1 1.9 22 125-146 437-462 (897)
35 cd00812 LeuRS_core catalytic c 91.1 0.092 2E-06 48.0 1.1 21 192-212 182-202 (314)
36 PRK12267 methionyl-tRNA synthe 89.9 0.08 1.7E-06 53.0 -0.5 18 192-209 222-239 (648)
37 PRK11893 methionyl-tRNA synthe 82.9 0.4 8.7E-06 46.2 0.1 17 192-208 219-235 (511)
38 PRK12268 methionyl-tRNA synthe 78.3 0.59 1.3E-05 45.8 -0.4 19 127-146 228-247 (556)
39 TIGR00395 leuS_arch leucyl-tRN 73.1 1.6 3.4E-05 46.0 1.1 17 125-141 484-501 (938)
40 PF12612 TFCD_C: Tubulin foldi 39.8 1E+02 0.0022 26.0 6.3 84 10-94 80-167 (193)
41 PF07295 DUF1451: Protein of u 38.4 30 0.00065 28.7 2.7 14 179-192 132-145 (146)
42 TIGR03831 YgiT_finger YgiT-typ 32.7 23 0.00049 22.4 0.9 17 138-154 29-45 (46)
43 TIGR00398 metG methionyl-tRNA 32.7 9.3 0.0002 37.2 -1.4 17 126-142 225-243 (530)
44 PF02209 VHP: Villin headpiece 24.6 33 0.00072 21.9 0.6 12 92-103 2-13 (36)
45 smart00153 VHP Villin headpiec 24.5 35 0.00076 21.7 0.7 12 92-103 2-13 (36)
46 PF12783 Sec7_N: Guanine nucle 22.8 2.4E+02 0.0052 22.8 5.6 81 6-89 66-151 (168)
No 1
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=100.00 E-value=7.1e-45 Score=336.27 Aligned_cols=128 Identities=49% Similarity=0.820 Sum_probs=125.7
Q ss_pred cccccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH
Q psy8378 2 VGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM 81 (230)
Q Consensus 2 y~~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~ 81 (230)
||+||+|++||+||+||+.||++++ |++|||||||||+|||++|+|+||+||.|||||+|++.||+||||||+.
T Consensus 227 Yh~~~~k~~qd~iV~~l~~GL~s~~------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~~~Ai~ILEFLs~ 300 (356)
T PF03542_consen 227 YHSHFSKQEQDEIVRALESGLGSKT------AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTPNMAIHILEFLSS 300 (356)
T ss_pred HHHhcCHhHHHHHHHHHHHHhccCc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 9999999999999999999998866 9999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-ccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhcccC
Q psy8378 82 LTRLP-KLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYW 135 (230)
Q Consensus 82 l~~lp-~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~R~w 135 (230)
|+++| ++|+||++|||++|||||++|+|+.++++|++++|||+|..||+|+|+.
T Consensus 301 L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~~ry~~yiv~LA~hvi~~WF~~crl~ 355 (356)
T PF03542_consen 301 LSRLPNHLYSNFTEDEYKRVFAIALPYTQPSRYSQYIVSLAHHVIAMWFLKCRLP 355 (356)
T ss_pred HhhCcHHHhcCCCHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999999999999999999999999999999974
No 2
>KOG0435|consensus
Probab=99.95 E-value=4.9e-29 Score=242.09 Aligned_cols=159 Identities=38% Similarity=0.749 Sum_probs=124.7
Q ss_pred HhhccccchhhhhH-----HHHHHHhcCCC------ccccCcchhhhhhhhcc----------cccCCCCCCCCCccHHH
Q psy8378 62 LSKISITTSIAIPI-----LEFVSMLTRLP------KLFSNFVGDQYMSVFAI----------CMPCTNPFKYNHYTVSL 120 (230)
Q Consensus 62 ls~i~t~~~mAvpi-----lEFl~~l~~lp------~l~~nf~~~~y~~vfgi----------~~~~in~~~l~~~~~~l 120 (230)
++-=+|++.|++|. .||+..+ .+. ..+.|+..+.+..-|.- -+.+.+...+++|+++
T Consensus 339 ~~~~gt~a~m~~P~hd~rD~ela~~~-~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs- 416 (876)
T KOG0435|consen 339 LDPYGTGAVMGAPGHDQRDKELAQKI-GIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVS- 416 (876)
T ss_pred ccCCCcceeeeccCcccchhHHHhcc-cceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceec-
Confidence 34458899999999 8999884 333 12233322222222210 1233445577888876
Q ss_pred HHHHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCC-----CCCCCCCCcccccccCCCCCCCCCceecCCc
Q psy8378 121 AHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP-----SPPLPLASNAEWQHCSCPKCGHGGARRETDT 194 (230)
Q Consensus 121 A~~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~-----~~~~p~g~~~~w~~~~~~~~g~~~~~retDt 194 (230)
.++.||.+ ||||||+||||++|++||.++|++++||+.||+ ..++|+.....|.++.||+||+ ..+|||||
T Consensus 417 --~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~-pAkRETDT 493 (876)
T KOG0435|consen 417 --YKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGE-PAKRETDT 493 (876)
T ss_pred --chhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCC-cccccccc
Confidence 46899988 899999999999999999999999999999996 2348999999999999999996 79999999
Q ss_pred cccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378 195 MDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY 228 (230)
Q Consensus 195 mD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y 228 (230)
||||+||+|||+||+||+|.+.. +|.+.+.|
T Consensus 494 MDTFvDSsWYYlRylDpkN~e~~---~d~a~a~k 524 (876)
T KOG0435|consen 494 MDTFVDSSWYYLRYLDPKNPEEP---FDKAKAKK 524 (876)
T ss_pred cchhhccceeeEeecCCCCcccc---cchhhhhc
Confidence 99999999999999999999887 99987665
No 3
>PLN02563 aminoacyl-tRNA ligase
Probab=99.93 E-value=6.9e-27 Score=238.91 Aligned_cols=154 Identities=31% Similarity=0.610 Sum_probs=120.9
Q ss_pred ccccchhhhhH-----HHHHHHhcCCC--ccccC------cchhhhhhhhcccccCCCCCC----CCCccHHHHHHHHHH
Q psy8378 65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN------FVGDQYMSVFAICMPCTNPFK----YNHYTVSLAHHVIAV 127 (230)
Q Consensus 65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n------f~~~~y~~vfgi~~~~in~~~----l~~~~~~lA~~vI~~ 127 (230)
-|||++|++|+ +||++.. +|| .++.. ..+..|.. .| ..+|++. |+|+.+.+|...|..
T Consensus 414 ~GTGaVm~~PaHd~~D~~~a~k~-~Lpi~~vI~~~d~~~~~~~~~y~~-~G---~l~ns~~~~~~~~Gl~~~eA~~~Ii~ 488 (963)
T PLN02563 414 YGTGAIMAVPAHDTRDFEFAQKF-DLPIKWVVKPADGNEDDAEKAYTG-EG---VIVNSSSSGLDINGLSSKEAAKKVIE 488 (963)
T ss_pred CCCCeEEEcCCCCHHHHHHHHHc-CCCceeeeccCccccccccccccC-ce---eEecCCCcccccCCcCHHHHHHHHHH
Confidence 39999999999 9999998 888 55521 11123332 35 4557765 999999999877776
Q ss_pred H------------------Hh-hcccCCCccceEecCCCC-cccCCCCCCCCCCCC--------CCCCCCCCcccccccC
Q psy8378 128 W------------------FL-KCRYWGTPIPMVHCPSCG-PVPVPYEALPITLPP--------SPPLPLASNAEWQHCS 179 (230)
Q Consensus 128 W------------------fl-r~R~wg~pIPi~~~~~~~-~~~v~~~~Lp~~lp~--------~~~~p~g~~~~w~~~~ 179 (230)
| ++ ||||||+|||||||++|| .+.+++++||+.||+ .+.+|+....+|....
T Consensus 489 ~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~ 568 (963)
T PLN02563 489 WLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTV 568 (963)
T ss_pred HHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCc
Confidence 5 44 899999999999999988 566777889988873 2445777778888778
Q ss_pred CCCCCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCccccc
Q psy8378 180 CPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSR 227 (230)
Q Consensus 180 ~~~~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~ 227 (230)
||+||+ .++||||||||||||||||+||++|+|++.. ++++..+
T Consensus 569 ~p~cg~-~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~---~~~~~~~ 612 (963)
T PLN02563 569 DPSSGK-PARRETNTMPQWAGSCWYYLRFMDPKNSNAL---VDKEKEK 612 (963)
T ss_pred CcCCCC-CcEECCCcCCchhhccHHHHHHhCCCccccc---cCHHHHh
Confidence 999995 7999999999999999999999999987665 6655443
No 4
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.93 E-value=1.1e-26 Score=235.03 Aligned_cols=147 Identities=38% Similarity=0.778 Sum_probs=117.2
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--cccc----CcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHH-----
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFS----NFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAV----- 127 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~----nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~----- 127 (230)
.-|||++|++|+ ++|++.. +|| .++. ++..+.|. -.| .++|++.|+|..+..|-..|..
T Consensus 326 ~~GTG~V~~~Pahd~~D~~~~~k~-~L~i~~vi~~~~~~~~~~~~~-~~G---~~~~~~~~~Gl~~~~A~~~Ii~~L~~~ 400 (842)
T TIGR00396 326 SYGTGAVMGVPAHDERDFEFAQKY-KLPIKVVIDPAGKNLKTQAFT-EDG---VLVNSGEFNGLNSSEAREAIIAMLEKE 400 (842)
T ss_pred CCCCCeEEEcCCCCHHHHHHHHHh-CCCcceeeCCccccccccccc-CCc---eEecchhcCCCCHHHHHHHHHHHHHHc
Confidence 349999999999 9999998 788 4443 22223443 246 5667788888888877766654
Q ss_pred -------------HHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC------CCCCCCCcccccccCCCCCCCCC
Q psy8378 128 -------------WFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS------PPLPLASNAEWQHCSCPKCGHGG 187 (230)
Q Consensus 128 -------------Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~------~~~p~g~~~~w~~~~~~~~g~~~ 187 (230)
|++ |||+||+|||||||++|+.+.+++++||+.+|+. +.+|+.....|....||+||+ .
T Consensus 401 g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~-~ 479 (842)
T TIGR00396 401 GKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGK-P 479 (842)
T ss_pred CCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCC-C
Confidence 555 8999999999999999998888999999988852 335667777887778999985 6
Q ss_pred ceecCCccccccccchhhhhhcCCCCCCC
Q psy8378 188 ARRETDTMDTFVDSAWYYVRYLGSGGDPN 216 (230)
Q Consensus 188 ~~retDtmD~WfdSgw~~~ry~~p~~~~~ 216 (230)
++||+|||||||||||||+||++|+|+..
T Consensus 480 ~~retDtmDtw~dSswy~~r~~~p~~~~~ 508 (842)
T TIGR00396 480 ALRETDTMDTFAGSSWYYLRYLDPKNTDQ 508 (842)
T ss_pred cEeCCCCCCCcccCCHHHHHhhCCCCcCC
Confidence 99999999999999999999999997543
No 5
>KOG3687|consensus
Probab=99.91 E-value=1.4e-25 Score=223.58 Aligned_cols=133 Identities=43% Similarity=0.736 Sum_probs=129.1
Q ss_pred cccccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH
Q psy8378 2 VGKHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM 81 (230)
Q Consensus 2 y~~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~ 81 (230)
||.+|++++|.+||.|+.+||.+++ |..||++||||.+|||+.++|.||+++.+|++++.+..+|.|.|||++.
T Consensus 728 yh~~lQ~~~~~~~I~~l~q~li~~~------aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~t~~LaTP~leFlS~ 801 (1697)
T KOG3687|consen 728 YHNYLQKTKQREMIYCLEQGLIHRC------ASVCVVALSICSLEMPDIIIKALPDLVVQLTHISATASLATPLLEFLST 801 (1697)
T ss_pred HHHhcCCcchhhHHHHHHHHHhhhh------HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhcccCCCccc
Q psy8378 82 LTRLPKLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKCRYWGTPIP 140 (230)
Q Consensus 82 l~~lp~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~R~wg~pIP 140 (230)
|.+||++|.||+.++|+.||+|+++|.||.++++|++.+|+|||..||+++|+.-|.=.
T Consensus 802 l~~L~hlF~nF~a~~~~~vfai~lpyt~P~k~~~y~v~LahhvIa~wfi~c~lp~r~~f 860 (1697)
T KOG3687|consen 802 LARLPHLFRNFAAEQYASVFAISLPYTNPSKFNQYIVCLAHHVIAMWFIRCRLPFRKDF 860 (1697)
T ss_pred HHHHHHHHHHHhhcCceEEEEEecCCCCcccccchhhhhhhhHhhhhhhheecchhhhh
Confidence 99999999999999999999999999999999999999999999999999998776533
No 6
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.89 E-value=1.1e-23 Score=212.54 Aligned_cols=147 Identities=41% Similarity=0.802 Sum_probs=111.6
Q ss_pred ccccchhhhhH-----HHHHHHhcCCC--ccccC------cchhhhhhhhcccccCCCCCCCCCccHHHHHHHHH-----
Q psy8378 65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN------FVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIA----- 126 (230)
Q Consensus 65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n------f~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~----- 126 (230)
-|||++|++|+ ++|++.. +|| .++.. .++..|.. .| .++|++.|+|..+..|-..|.
T Consensus 329 ~GTG~V~~~Pah~~~D~~~~~~~-~L~~~~~i~~~g~~~~~~~~~~~~-~g---~~~~~~~~~Gl~~~~a~~~Ii~~L~~ 403 (805)
T PRK00390 329 YGTGAVMAVPAHDQRDFEFAKKY-GLPIKPVIEPGDGDEDISEEAYTG-DG---VLINSGELDGLDSEEAKEAIIAWLEE 403 (805)
T ss_pred CCCCeEEEcCCCCHHHHHHHHHc-CCCceeeeCCCCcccccccccccC-Ce---EEEeccccCCCCHHHHHHHHHHHHHH
Confidence 49999999999 9999988 788 44421 22223332 35 445666778877777665554
Q ss_pred -------------HHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC----C-CCCCCCcccccccCCCCCCCCC
Q psy8378 127 -------------VWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS----P-PLPLASNAEWQHCSCPKCGHGG 187 (230)
Q Consensus 127 -------------~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~----~-~~p~g~~~~w~~~~~~~~g~~~ 187 (230)
+|++ |||+||+|||||||++||.+.+++++||+.+|+. + .+|+.....|....|+.||+ .
T Consensus 404 ~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 482 (805)
T PRK00390 404 KGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK-P 482 (805)
T ss_pred cCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC-C
Confidence 5777 8999999999999999998888888998877742 1 23555566676667888885 7
Q ss_pred ceecCCccccccccchhhhhhcCCCCCCCC
Q psy8378 188 ARRETDTMDTFVDSAWYYVRYLGSGGDPNV 217 (230)
Q Consensus 188 ~~retDtmD~WfdSgw~~~ry~~p~~~~~~ 217 (230)
++||+|||||||||||||++|++|+|++..
T Consensus 483 ~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~ 512 (805)
T PRK00390 483 ARRETDTMDTFVGSSWYYLRYTDPHNDEAP 512 (805)
T ss_pred ceeCCcccccccccccHHHHhcCcccccCc
Confidence 999999999999999999999999875543
No 7
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-20 Score=189.54 Aligned_cols=166 Identities=35% Similarity=0.605 Sum_probs=131.1
Q ss_pred HhhHHHHH--HHhhccccchhhhhH-----HHHHHHhcCCC--cccc-C--cchhhhhhhhcccccCCCCCCCCCccHHH
Q psy8378 53 KLLPEVLL--NLSKISITTSIAIPI-----LEFVSMLTRLP--KLFS-N--FVGDQYMSVFAICMPCTNPFKYNHYTVSL 120 (230)
Q Consensus 53 k~l~~il~--~ls~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~-n--f~~~~y~~vfgi~~~~in~~~l~~~~~~l 120 (230)
+.+|-+.. -+.--+||+.|+||. |||+... +|| .++. . -.+..|. ..| ..|||+.++|.....
T Consensus 322 e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y-~l~i~~vi~~~~~~~~~~~~-~~g---~linS~~~~gl~~e~ 396 (814)
T COG0495 322 EKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKY-KLPIKKVIMPEGTVGKKVYE-GEG---VLINSGGLDGLDYEE 396 (814)
T ss_pred CcCCEEEeCcccccccccceecCCCCCchhhHHHHhc-CCCeEEEEecCCCcccceec-cCc---eEeccccccCcchhH
Confidence 44444433 233459999999999 9999987 899 4442 1 2244555 677 489998899988886
Q ss_pred HHHHHH------------------HH-HhhcccCCCccceEecCCCCcccCCCCCCCCCCCCC-----CCCCCCCccccc
Q psy8378 121 AHHVIA------------------VW-FLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQ 176 (230)
Q Consensus 121 A~~vI~------------------~W-flr~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~-----~~~p~g~~~~w~ 176 (230)
|..++. +| +.||||||.||||++|++|+...++++.||+.||+. ..+|+..+..|.
T Consensus 397 a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~ 476 (814)
T COG0495 397 AKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWV 476 (814)
T ss_pred HHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceE
Confidence 655444 46 668999999999999999999999999999999972 136999999999
Q ss_pred ccCCCCCCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378 177 HCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY 228 (230)
Q Consensus 177 ~~~~~~~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y 228 (230)
.+.||. ....|+|||||+|++|+|||+||.||.|.. .+|.+++..+|
T Consensus 477 ~~s~~~---s~~~ret~Tm~~~~~sswy~~r~~d~~~~~--~~~~~~e~~~y 523 (814)
T COG0495 477 IESLPD---STAYRETDTMDTFIDSSWYYLRFFDPIFLG--ELPFDREEFNY 523 (814)
T ss_pred EEecCC---CceeeehhhhhHhcccccccHhhcChhcCc--cchhcHHHHhc
Confidence 888886 368999999999999999999999999884 24577777666
No 8
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.6e-15 Score=150.96 Aligned_cols=91 Identities=25% Similarity=0.395 Sum_probs=62.3
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc------cCCCCCCCCCceecCCcccc
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH------CSCPKCGHGGARRETDTMDT 197 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~------~~~~~~g~~~~~retDtmD~ 197 (230)
..+|+| |||+||+|||||+|++|+++.+..++|.... ....+..|.+.||.. ..|+.||+ .|+|++|||||
T Consensus 454 r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~-~~~~~~~g~~~w~~~~idel~~~~~~~g~-~~~rv~DvlDV 531 (933)
T COG0060 454 RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELV-GQLVEEKGIDDWHRPDIDELLPPCPEDGK-EYRRVPDVLDV 531 (933)
T ss_pred CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHH-HHHhhhcCchhhhccchHhhcCCCCCCcc-eeEecCcceEE
Confidence 457888 8999999999999999888776333332100 011225577778853 22446775 89999999999
Q ss_pred ccccchhhhhhcCCCCCCCC
Q psy8378 198 FVDSAWYYVRYLGSGGDPNV 217 (230)
Q Consensus 198 WfdSgw~~~ry~~p~~~~~~ 217 (230)
|||||.++..-..|+++..+
T Consensus 532 WFDSGs~~~a~~~~~~~~~~ 551 (933)
T COG0060 532 WFDSGSTPYAVLHPRENLKF 551 (933)
T ss_pred EEcCCCCcccccCCcccccC
Confidence 99999555544447665443
No 9
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.47 E-value=8.1e-15 Score=150.18 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=56.8
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCccccccc---CCCCCCCCCceecCCccccccc
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHC---SCPKCGHGGARRETDTMDTFVD 200 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~---~~~~~g~~~~~retDtmD~Wfd 200 (230)
+.+|++ |||+||+|||+|||++|+++.++++ ++..+++ .....|.+.||... .+|.|+ ..++|++||||||||
T Consensus 451 ~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~-~~~~i~~-~~~~~g~~~W~~~~~~~~~~~~~-~~~~~~~DvlDvWfd 527 (912)
T PRK05743 451 RPDWCISRQRTWGVPIPIFYHKETGELHPTPE-LIEHVAK-LFEKEGIDAWFELDAKELLPDEA-DEYEKETDILDVWFD 527 (912)
T ss_pred CcCccccccceeCceEEEEEECCCCcEeecHH-HHHHHHH-HHHhhCCccccccCHHHhcCCcc-cCEEECCchhhhhhh
Confidence 378888 8999999999999999988776443 3221111 01123677787532 145455 479999999999999
Q ss_pred cc--hhhhhh
Q psy8378 201 SA--WYYVRY 208 (230)
Q Consensus 201 Sg--w~~~ry 208 (230)
|| |++++.
T Consensus 528 Sg~s~~~~~~ 537 (912)
T PRK05743 528 SGSSHAAVLE 537 (912)
T ss_pred hCCCHHHHhc
Confidence 98 776665
No 10
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=1.2e-13 Score=139.62 Aligned_cols=79 Identities=35% Similarity=0.704 Sum_probs=54.7
Q ss_pred HHHh-hcccCCCccceEecCCCCcccCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccchh
Q psy8378 127 VWFL-KCRYWGTPIPMVHCPSCGPVPVPY-EALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWY 204 (230)
Q Consensus 127 ~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~-~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSgw~ 204 (230)
+|++ |||+||.|||+|+|++||...+++ +.+|+. |+.+... ...|+.||...++|++||||+||||||.
T Consensus 397 DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-------~~~d~~~--~~~~~~~g~~~~~~~~dvlD~WfdS~~~ 467 (800)
T PRK13208 397 DWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-------PTKDEPP--GYKCPQCGSPGFEGETDVMDTWATSSIT 467 (800)
T ss_pred CceeeeccccCCcceEEEeCCCCCeecCchhhhccC-------chhhccc--cccccccCCcCEEecCCEEEEEEeCCch
Confidence 8888 899999999999999998876653 334332 2222111 1347777755799999999999999964
Q ss_pred hhhhc-CCCCC
Q psy8378 205 YVRYL-GSGGD 214 (230)
Q Consensus 205 ~~ry~-~p~~~ 214 (230)
+.... .|.+.
T Consensus 468 ~~~~~~~~~~~ 478 (800)
T PRK13208 468 PLIVTGWERDE 478 (800)
T ss_pred HHHHhCCCCCh
Confidence 44333 35543
No 11
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.32 E-value=3.5e-13 Score=139.21 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=57.0
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA 202 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg 202 (230)
.+.+|++ |||+||.|||+|||++|+....++...+..+......+......+ ..++.|| ..++|++||||||||||
T Consensus 441 ~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~DVlDtWFdS~ 517 (995)
T PTZ00419 441 NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKK--FGLSEED-FELEQDEDVLDTWFSSG 517 (995)
T ss_pred ccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccc--cCCcccc-CCeEECCceEEEEEeCC
Confidence 4779988 899999999999999987543322222221110000011110001 1133344 36999999999999999
Q ss_pred hhhhhh-cCCCCCCCC--CCCCC
Q psy8378 203 WYYVRY-LGSGGDPNV--RLPDQ 222 (230)
Q Consensus 203 w~~~ry-~~p~~~~~~--~~~~~ 222 (230)
+++... .+|++++.+ .+|+|
T Consensus 518 l~p~~~~g~p~~~~~~~~~~P~d 540 (995)
T PTZ00419 518 LFPFSTLGWPDQTDDLQRFFPTS 540 (995)
T ss_pred HHHHHHhCCCCChHHHhhcCCCc
Confidence 665544 568765443 34554
No 12
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.4e-13 Score=136.39 Aligned_cols=77 Identities=29% Similarity=0.594 Sum_probs=59.2
Q ss_pred HHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCcccccccc
Q psy8378 123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDS 201 (230)
Q Consensus 123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdS 201 (230)
..|.+|++ |||+||.|||+|||++||+..+.++ +|.... ....|+. ..+++++|||||||+|
T Consensus 394 ~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~~~~~-------------~~~~~~~---~~~~qd~DVLDTWFSS 456 (877)
T COG0525 394 ENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EPEDPA-------------AAEKCPK---EELEQDEDVLDTWFSS 456 (877)
T ss_pred hhCcCceeeeeeecCcccceEEecCCCcEEeCCc-cccchh-------------hhccCch---hcccCCcchhhhhhhc
Confidence 45779999 8999999999999999898887665 433211 0122332 3589999999999999
Q ss_pred c-hhhhhhcCCCCCCC
Q psy8378 202 A-WYYVRYLGSGGDPN 216 (230)
Q Consensus 202 g-w~~~ry~~p~~~~~ 216 (230)
| |.+....+|..++.
T Consensus 457 ~LwPfstlgWp~~t~~ 472 (877)
T COG0525 457 SLWPFSTLGWPEETPD 472 (877)
T ss_pred ccccccccCCCCcchH
Confidence 9 99999999986444
No 13
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.29 E-value=5.8e-13 Score=137.41 Aligned_cols=94 Identities=30% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCC-----CCCCCCCCCCCcccccccCCCCCCCCCceecCCcc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPIT-----LPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTM 195 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~-----lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtm 195 (230)
.+.+|++ |||+||+|||+|+|++|++..+.. ++|... .+.+.+.|+.+. ....|+. | ..++|++|||
T Consensus 442 ~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~---~~~~~~~-~-~~~~r~~dVl 516 (975)
T PRK06039 442 NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDE---VTLPCPD-G-GTMRRVPDVI 516 (975)
T ss_pred cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhccccccc---ccccCCC-C-cceEeccccc
Confidence 4779988 899999999999999988655533 222100 011112222211 1234653 4 4799999999
Q ss_pred ccccccc-hhhhhhcCCCCCCC---CCCCCC
Q psy8378 196 DTFVDSA-WYYVRYLGSGGDPN---VRLPDQ 222 (230)
Q Consensus 196 D~WfdSg-w~~~ry~~p~~~~~---~~~~~~ 222 (230)
||||||| |++..+..|.++.. ..+|+|
T Consensus 517 DvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad 547 (975)
T PRK06039 517 DVWFDSGSMPYAQLHYPFENKEWFEKHFPAD 547 (975)
T ss_pred cceeecCCccHHHhCCcccChhhhhccCCce
Confidence 9999999 78888888875432 235554
No 14
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.28 E-value=9.3e-13 Score=138.07 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=58.6
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCC--CCCCCCCC-----CCCCCCCCcccccccCCCCCC-CCCceecCCc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYE--ALPITLPP-----SPPLPLASNAEWQHCSCPKCG-HGGARRETDT 194 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~--~Lp~~lp~-----~~~~p~g~~~~w~~~~~~~~g-~~~~~retDt 194 (230)
.+.+|++ |||+||+|||||+|++|+...+.++ +|.. +++ +.+.++.+... ..||..+ ...++|++||
T Consensus 567 n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~~~~~~~dlh~~~iD~~~---~~~~~g~~~~~~~r~~DV 642 (1205)
T PTZ00427 567 DAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LSGVKNINDLHRHFIDHIE---IKNPKGKTYPKLKRIPEV 642 (1205)
T ss_pred cCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-HhccccchhhcccccChhh---ccCCccccccceeecCce
Confidence 3668888 8999999999999998876554431 2211 111 12222222211 1244211 1259999999
Q ss_pred cccccccc-hhhhhhcCCCC--CCC--CCCCCC
Q psy8378 195 MDTFVDSA-WYYVRYLGSGG--DPN--VRLPDQ 222 (230)
Q Consensus 195 mD~WfdSg-w~~~ry~~p~~--~~~--~~~~~~ 222 (230)
|||||||| |.|+....|.+ .+. ..+|+|
T Consensus 643 lD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD 675 (1205)
T PTZ00427 643 FDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD 675 (1205)
T ss_pred EEEEEeCCCChHHHhCCCcccchhhHhccCCce
Confidence 99999999 77777777863 333 235654
No 15
>PLN02882 aminoacyl-tRNA ligase
Probab=99.27 E-value=1.2e-12 Score=136.96 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=54.5
Q ss_pred HHHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCCCCCCCCCCCCCcccc---cccCCC-CCCC--CCceecCC
Q psy8378 123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPITLPPSPPLPLASNAEW---QHCSCP-KCGH--GGARRETD 193 (230)
Q Consensus 123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~lp~~~~~p~g~~~~w---~~~~~~-~~g~--~~~~retD 193 (230)
..+.+|++ |||+||+|||+|+|++|+...+.+ ++|. .+.+. .+.+.|+ ....+| .+|. ..++|++|
T Consensus 462 ~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~-~~~~~----~~~dlh~~~id~i~~p~~~~~~~~~~~r~~d 536 (1159)
T PLN02882 462 ENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELE-KLSGV----KVTDLHRHFIDHITIPSSRGPEFGVLRRVDD 536 (1159)
T ss_pred hcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHH-HHhCC----chhhccccchhhhccccccCCchhceEecCc
Confidence 34678888 899999999999999876544332 2221 11110 0112222 112223 2231 36999999
Q ss_pred ccccccccc-hhhhhhcCCCC
Q psy8378 194 TMDTFVDSA-WYYVRYLGSGG 213 (230)
Q Consensus 194 tmD~WfdSg-w~~~ry~~p~~ 213 (230)
||||||||| |.|+....|.+
T Consensus 537 VlD~WFdSg~~p~a~~~~p~e 557 (1159)
T PLN02882 537 VFDCWFESGSMPYAYIHYPFE 557 (1159)
T ss_pred eeeeeeccCccHHHHcCCccc
Confidence 999999999 77777788864
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.26 E-value=1.1e-12 Score=136.15 Aligned_cols=71 Identities=28% Similarity=0.601 Sum_probs=55.1
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA 202 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg 202 (230)
.+.+|++ |||+||.|||+|||+++ .+.++.+ . ...||.||+..++|++||||||||||
T Consensus 412 ~l~DW~ISRqr~WG~PIP~w~~~~~-~~~v~~~-~-------------------~~~~~~~~~~~~~~~~dVlDvWFdS~ 470 (1052)
T PRK14900 412 NIHDWCISRQLWWGHQIPAWYCPDG-HVTVARE-T-------------------PEACSTCGKAELRQDEDVLDTWFSSG 470 (1052)
T ss_pred cCccceEEeecCCCceeCeEEcCCC-cEEeccc-c-------------------cccccccCccceecCCceEEEEEcCC
Confidence 3678888 89999999999999874 3333221 0 12467777667999999999999999
Q ss_pred -hhhhhhcCCCCCC
Q psy8378 203 -WYYVRYLGSGGDP 215 (230)
Q Consensus 203 -w~~~ry~~p~~~~ 215 (230)
||+.++.+|++++
T Consensus 471 l~y~s~~g~p~~~~ 484 (1052)
T PRK14900 471 LWPFSTMGWPEQTD 484 (1052)
T ss_pred hHHHHHHcCCCchH
Confidence 9999999887654
No 17
>KOG0433|consensus
Probab=99.24 E-value=2.9e-13 Score=133.76 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=58.4
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CC-----C--CCCCCceecCC
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CP-----K--CGHGGARRETD 193 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~-----~--~g~~~~~retD 193 (230)
-..||| |||.||.|||++|.++++.+.++.+.+.+.. ...+..|.|.||.... .| . .-+.+|.|.||
T Consensus 466 R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~--~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtD 543 (937)
T KOG0433|consen 466 RPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAK--LTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTD 543 (937)
T ss_pred CCcceeeeccccCCcceeEEecCCCceeehHHHHHHHH--HHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCc
Confidence 457999 8999999999999999888887765443211 0112558899996321 11 1 12247999999
Q ss_pred ccccccccc--hhhhhh
Q psy8378 194 TMDTFVDSA--WYYVRY 208 (230)
Q Consensus 194 tmD~WfdSg--w~~~ry 208 (230)
|||+||||| |.+++-
T Consensus 544 imDVWFDSGssWs~v~~ 560 (937)
T KOG0433|consen 544 IMDVWFDSGSSWSAVLD 560 (937)
T ss_pred eeeeEecCCCcceeecC
Confidence 999999999 766543
No 18
>PLN02381 valyl-tRNA synthetase
Probab=99.23 E-value=2.3e-12 Score=134.00 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=50.7
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc--------cCCCCC-CCC-CceecC
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH--------CSCPKC-GHG-GARRET 192 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~--------~~~~~~-g~~-~~~ret 192 (230)
.+.+|++ |||+||+|||+|||+.++. .+.. .+. ..+.|+.. ..++.| |+. .++|++
T Consensus 511 n~~DWcISRQr~WG~pIPiw~~~~~~~------~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~ 577 (1066)
T PLN02381 511 NIRDWCISRQLWWGHRIPAWYVTLEDD------QLKE----LGS---YNDHWVVARNESDALLEASQKFPGKKFELSQDP 577 (1066)
T ss_pred cCccceeeeecccCCccceEEeccChh------hccc----CCc---ccceEEEccchHhhcchhhcccCCCccceeecC
Confidence 5778988 8999999999999861111 1100 000 00112211 112122 322 499999
Q ss_pred Cccccccccchhhhhhc-CCCCCCCC--CCCCC
Q psy8378 193 DTMDTFVDSAWYYVRYL-GSGGDPNV--RLPDQ 222 (230)
Q Consensus 193 DtmD~WfdSgw~~~ry~-~p~~~~~~--~~~~~ 222 (230)
|||||||||||++.+++ +|.+.+.+ .+|+|
T Consensus 578 DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d 610 (1066)
T PLN02381 578 DVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTS 610 (1066)
T ss_pred ceeeEEEeCCchHHHHhcCCCCHHHHhccCCCe
Confidence 99999999996666665 57654433 35654
No 19
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.23 E-value=1.2e-12 Score=135.01 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=45.8
Q ss_pred HHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CCC--CCCCCceecCCccccccc
Q psy8378 127 VWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CPK--CGHGGARRETDTMDTFVD 200 (230)
Q Consensus 127 ~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~~--~g~~~~~retDtmD~Wfd 200 (230)
+|++ |||+||+|||+|||+++ +..++.+.+.... +.....|.+.||.... ++. +++..++|++||||||||
T Consensus 489 DWcISRQR~WG~PIP~~~~~~~-~~~~~~~~~~~~~--~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFd 565 (961)
T PRK13804 489 DWVISRQRAWGVPIPIFVAEDG-EILMDEEVNARIA--DAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFD 565 (961)
T ss_pred cceeeeeccCCceeeEEEcCCC-CEeccHHHHHHHH--HHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeec
Confidence 7888 89999999999999764 4433332211100 0011235667774211 221 123479999999999999
Q ss_pred cc
Q psy8378 201 SA 202 (230)
Q Consensus 201 Sg 202 (230)
||
T Consensus 566 Sg 567 (961)
T PRK13804 566 SG 567 (961)
T ss_pred CC
Confidence 98
No 20
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.20 E-value=3.6e-12 Score=129.88 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=50.2
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccc----------cccCCCCCCCCCceecCC
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEW----------QHCSCPKCGHGGARRETD 193 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w----------~~~~~~~~g~~~~~retD 193 (230)
+.+|++ |||+||+|||+|+|++|+... +...... +.+ .....|.+.|| ....|+.| ..++|++|
T Consensus 460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~-~~~~~~~-~~~-~~~~~g~~~w~~~~~~~~~~~~~~~~~~~--~~~~r~~d 534 (861)
T TIGR00392 460 RPDWCISRQRYWGIPIPIWYCEDTGEPI-VVGSIEE-LIE-LIELKGIDAWFEDLHRDFLDKITLKSGDG--GEYRRVPD 534 (861)
T ss_pred CCcceeeccccCCCeeeEEEECCCCCCc-CchhHHH-HHH-HHHHhCCccccccchhhhcCchhccCCCC--cceEEccc
Confidence 568888 899999999999999988652 1111100 000 00011222222 22345544 36999999
Q ss_pred ccccccccc-hhhhhhcCCCC
Q psy8378 194 TMDTFVDSA-WYYVRYLGSGG 213 (230)
Q Consensus 194 tmD~WfdSg-w~~~ry~~p~~ 213 (230)
||||||||| |++.....|.+
T Consensus 535 vlDvWfdS~~~~~~~~~~~~~ 555 (861)
T TIGR00392 535 VLDVWFDSGSMPYASIHYPFE 555 (861)
T ss_pred cccchhhcCcchHHhcCCCCC
Confidence 999999998 44333335544
No 21
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.19 E-value=2.4e-12 Score=132.84 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=50.3
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccC---CC---CCCCCCceecCCcccc
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CP---KCGHGGARRETDTMDT 197 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~---~~---~~g~~~~~retDtmD~ 197 (230)
+.+|++ |||+||+|||+|||++|++..+..+.+.... +.....|.+.||.... .| .++...|+|++|||||
T Consensus 466 ~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDv 543 (974)
T PLN02843 466 RSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVK--SIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDV 543 (974)
T ss_pred CcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHH--HHHHhhCCcccccCCHHHhCcccccCchhhhEeccccccc
Confidence 567888 8999999999999999887655443332110 0011236677885211 12 1222469999999999
Q ss_pred ccccc
Q psy8378 198 FVDSA 202 (230)
Q Consensus 198 WfdSg 202 (230)
|||||
T Consensus 544 WFdSg 548 (974)
T PLN02843 544 WFDSG 548 (974)
T ss_pred chhcC
Confidence 99999
No 22
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.16 E-value=2.5e-13 Score=133.65 Aligned_cols=87 Identities=31% Similarity=0.547 Sum_probs=53.1
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc---cCCCCCCCCCceecCCcccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH---CSCPKCGHGGARRETDTMDTFV 199 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~---~~~~~~g~~~~~retDtmD~Wf 199 (230)
.+.+|++ |||+||+|||+|+|++|+...++++.++.... .....+.+.||.. ..++.++ ..++|++||||+||
T Consensus 413 ~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dvlD~Wf 489 (601)
T PF00133_consen 413 NLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIAD--RVEKEGIDAWLHKPAEDKLPCCG-GELRRDTDVLDTWF 489 (601)
T ss_dssp T--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHH--HSTHHHHSCTSSHHHHHHHTTTS-SEEEEHS-EE-HHH
T ss_pred ccccchhhccCCCCccceeeecccCccccccccccccccc--ccccccccccccccccccccccc-cceEEeeeeccccc
Confidence 3567766 89999999999999999887776543332100 0012233344421 1234455 57999999999999
Q ss_pred ccchhhh-hhcCCCC
Q psy8378 200 DSAWYYV-RYLGSGG 213 (230)
Q Consensus 200 dSgw~~~-ry~~p~~ 213 (230)
|||+++. ....|++
T Consensus 490 dSg~~~~~~~~~~~~ 504 (601)
T PF00133_consen 490 DSGLWPFAVLGWPEN 504 (601)
T ss_dssp HHCTCHHHHTTSTTC
T ss_pred cccCCcccccccccc
Confidence 9995544 5555766
No 23
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.12 E-value=1.8e-11 Score=124.91 Aligned_cols=74 Identities=26% Similarity=0.443 Sum_probs=52.4
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC-CCceecCCcccccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGH-GGARRETDTMDTFVDS 201 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~-~~~~retDtmD~WfdS 201 (230)
.+.+|++ |||+||.|||+|||++|+.+.+..++.....+. .+|. ..++|++|||||||||
T Consensus 395 ~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~dVlDtWFdS 456 (861)
T TIGR00422 395 NIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKT------------------NTGPSVELEQDTDVLDTWFSS 456 (861)
T ss_pred ccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhh------------------ccCCcccEEECCCcccceecc
Confidence 3678888 899999999999999888766544322111110 1121 3699999999999999
Q ss_pred c-hhhhhhcCCCCCC
Q psy8378 202 A-WYYVRYLGSGGDP 215 (230)
Q Consensus 202 g-w~~~ry~~p~~~~ 215 (230)
| ||+.....|.+++
T Consensus 457 ~l~~~s~~g~p~~~~ 471 (861)
T TIGR00422 457 SLWPFSTLGWPDETK 471 (861)
T ss_pred chHHHHHhCCCCChH
Confidence 9 6766666776543
No 24
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.09 E-value=3.5e-11 Score=112.50 Aligned_cols=78 Identities=24% Similarity=0.493 Sum_probs=52.8
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCC-CCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEA-LPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA 202 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~-Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg 202 (230)
+.+|++ |+|.||.|||+|+|++|+...+..+. ++.... . ...+..||+..++|++||||||||||
T Consensus 209 l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~v~dvWfds~ 275 (382)
T cd00817 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA--------A-----PEACVPCGGEELKQDEDVLDTWFSSS 275 (382)
T ss_pred CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh--------c-----cccccCCCccCeeECCceeeeeecCC
Confidence 446666 88999999999999998876655432 221110 0 11223456668999999999999999
Q ss_pred -hhhhhhcCCCCCC
Q psy8378 203 -WYYVRYLGSGGDP 215 (230)
Q Consensus 203 -w~~~ry~~p~~~~ 215 (230)
+|+.....|.+++
T Consensus 276 ~~~~~~~~~~~~~~ 289 (382)
T cd00817 276 LWPFSTLGWPEETK 289 (382)
T ss_pred CcHHHHhCCCCcch
Confidence 5555555565543
No 25
>PLN02943 aminoacyl-tRNA ligase
Probab=99.04 E-value=2.5e-11 Score=125.24 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=49.9
Q ss_pred HHHHHHh-hcccCCCccceEec--CCCCc-ccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC-CceecCCccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHC--PSCGP-VPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHG-GARRETDTMDTF 198 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~--~~~~~-~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~-~~~retDtmD~W 198 (230)
.+.+|++ |||+||.|||+||| ++|+. ..+..+.-+ +....++.||.. .++|++||||||
T Consensus 447 ~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~----------------~~~~~~~~~g~~~~~~~~~DVlDtW 510 (958)
T PLN02943 447 NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEE----------------ALEKAREKYGKDVEIYQDPDVLDTW 510 (958)
T ss_pred cCccceEEEecCCCCccCceeccccCCCceEEecCcHHH----------------HHHHhhhhcCCchheeecCceEEEE
Confidence 4677888 89999999999997 45653 222211110 000112334422 588999999999
Q ss_pred cccc-hhhhhhcCCCC
Q psy8378 199 VDSA-WYYVRYLGSGG 213 (230)
Q Consensus 199 fdSg-w~~~ry~~p~~ 213 (230)
|||| ||+..+.+|..
T Consensus 511 FdS~l~p~s~lgwp~~ 526 (958)
T PLN02943 511 FSSALWPFSTLGWPDV 526 (958)
T ss_pred EcCccchHHhcCCCcc
Confidence 9999 99999888763
No 26
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.99 E-value=1.7e-10 Score=118.08 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=49.4
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA 202 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg 202 (230)
.+.+|++ |||+||.|||+|||++ +...+..++ |+ .+ ....++|++||||||||||
T Consensus 397 ~l~DWcISRq~~WG~pIP~~~~~~-~~~~v~~~~-----~~---------------~~---~~~~~~~~~DvlDtWfsS~ 452 (874)
T PRK05729 397 NIQDWCISRQLWWGHRIPAWYDED-GEVYVGREE-----PE---------------AR---EKALLTQDEDVLDTWFSSA 452 (874)
T ss_pred cCccceeeeecccCCcccEEEeCC-CcEEeCCcc-----cc---------------cc---cccCeEeCCceecceecCC
Confidence 3678888 8999999999999987 333332211 10 01 1124899999999999999
Q ss_pred -hhhhhhcCCCCCCC
Q psy8378 203 -WYYVRYLGSGGDPN 216 (230)
Q Consensus 203 -w~~~ry~~p~~~~~ 216 (230)
|++....+|++++.
T Consensus 453 l~~~~~lgwp~~~~~ 467 (874)
T PRK05729 453 LWPFSTLGWPEKTED 467 (874)
T ss_pred ccHHHHhCCCCCcHH
Confidence 99888888865543
No 27
>KOG0434|consensus
Probab=98.92 E-value=1.6e-10 Score=114.17 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=63.9
Q ss_pred CCCCCccHHHHHHHHHHHHh-hcccCCCccceEecCCCCcccCCC--CCCCCCCCCCCCCCCCCcccccccCCC-CCCCC
Q psy8378 111 FKYNHYTVSLAHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EALPITLPPSPPLPLASNAEWQHCSCP-KCGHG 186 (230)
Q Consensus 111 ~~l~~~~~~lA~~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~Lp~~lp~~~~~p~g~~~~w~~~~~~-~~g~~ 186 (230)
.+|.+|... ..+|-+ |.|+||+|||+|+.+|+.++.+.+ ++|. +|.+.....+.++. -.+.+.| ++|.+
T Consensus 444 KRF~NWL~n-----ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLE-eLSG~kItDlHRe~-iD~itIps~~gkg 516 (1070)
T KOG0434|consen 444 KRFANWLKN-----ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELE-ELSGVKITDLHRES-IDHITIPSKKGKG 516 (1070)
T ss_pred HHHHHHHhh-----hhhcccccccccCCCcceEEccCCceEEEeccHHHHH-HhcCCcchhhhhhh-cCceecccCCCCc
Confidence 466677654 679988 779999999999999988776655 2332 12211111111110 0123344 45667
Q ss_pred CceecCCccccccccchh-hhhhcCCCCCCC
Q psy8378 187 GARRETDTMDTFVDSAWY-YVRYLGSGGDPN 216 (230)
Q Consensus 187 ~~~retDtmD~WfdSgw~-~~ry~~p~~~~~ 216 (230)
.++|.++|+||||+||.+ |+.-+.|..+.+
T Consensus 517 ~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~ 547 (1070)
T KOG0434|consen 517 VLHRVSEVFDCWFESGSMPYAQRHYPFENKE 547 (1070)
T ss_pred ceehhhhHhhhhhccCCCcchhhcCCccchH
Confidence 899999999999999954 455567876655
No 28
>KOG0432|consensus
Probab=98.28 E-value=6.7e-08 Score=97.75 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=49.5
Q ss_pred HHHHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccc------------cCC-CCCCCCCc
Q psy8378 123 HVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQH------------CSC-PKCGHGGA 188 (230)
Q Consensus 123 ~vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~------------~~~-~~~g~~~~ 188 (230)
..|.+||+ ||-+||..||+|+-...+. -++ ..-|.. .++ | +.+-.+
T Consensus 452 ~~i~DWCiSRQLWWGHrIPAy~v~~~~~--~~e-----------------e~~WvvarseeeA~ekaa~k~g~-~~~~~L 511 (995)
T KOG0432|consen 452 ENIRDWCISRQLWWGHRIPAYFVNLSDG--RAE-----------------EDYWVVARSEEEAREKAAEKFGP-GKEFTL 511 (995)
T ss_pred hhccccchhhhhhhccccceeeeecccC--CCc-----------------cceeEEeCCHHHHHHHHHHHhCC-ccccee
Confidence 56889998 8999999999998422111 000 011110 001 1 011367
Q ss_pred eecCCccccccccc-hhhhhhcCCCCCCC
Q psy8378 189 RRETDTMDTFVDSA-WYYVRYLGSGGDPN 216 (230)
Q Consensus 189 ~retDtmD~WfdSg-w~~~ry~~p~~~~~ 216 (230)
+|+.|||||||.|| |.|..+.+|+.++.
T Consensus 512 ~qDpDVLDTWFSS~L~PfS~lGWP~~t~d 540 (995)
T KOG0432|consen 512 EQDPDVLDTWFSSGLWPFSTLGWPEETKD 540 (995)
T ss_pred ecCccHHHhhhhcccccchhcCCcccccc
Confidence 99999999999999 99999999985554
No 29
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.14 E-value=8.5e-07 Score=81.86 Aligned_cols=52 Identities=40% Similarity=0.779 Sum_probs=38.0
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc-
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA- 202 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg- 202 (230)
+.+|++ |+|.||.|+|+|+|++++.+.+ .++.+|||||||||
T Consensus 189 l~dw~iSR~~~WGip~P~~~~~~~~~~~~------------------------------------~~~~~v~~vWfda~~ 232 (338)
T cd00818 189 RRDWCISRQRYWGTPIPVWYCEDCGEVLV------------------------------------RRVPDVLDVWFDSGS 232 (338)
T ss_pred chhcceeeecccCceeeEEEecCCCeEEE------------------------------------ecCCceEEEEEeCCC
Confidence 567877 8999999999999877543221 46889999999998
Q ss_pred hhhhhhcCCC
Q psy8378 203 WYYVRYLGSG 212 (230)
Q Consensus 203 w~~~ry~~p~ 212 (230)
+++..-..|.
T Consensus 233 ~~~~~~~~~~ 242 (338)
T cd00818 233 MPYAQLHYPF 242 (338)
T ss_pred CHHHHcCCCC
Confidence 5444333343
No 30
>KOG3687|consensus
Probab=97.62 E-value=1.1e-05 Score=82.97 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=105.2
Q ss_pred cccchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHH-hhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHH-
Q psy8378 4 KHWMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTL-EMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSM- 81 (230)
Q Consensus 4 ~~~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~-E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~- 81 (230)
+.++++++|+.+..+..|.+.|. -....-++.+.+||+ +.|.++-+.||+++...|++.+.+...+++++|+-.
T Consensus 1020 ~q~sr~~Ed~~~S~sfgGh~~r~----~a~~v~as~~~Ls~~~~~P~~~~~aLpe~a~TgSrv~~~P~~~~~~~~plC~~ 1095 (1697)
T KOG3687|consen 1020 QQVSRGAEDRVRSMSFGGHGLRV----GALDVPASQFLLSATSPGPRTAPAALPEKASTGSRVPVQPKTNLAAYVPLCTQ 1095 (1697)
T ss_pred chhcccchhheeeeccCCcchhh----ccccCcHHHHHHhhcCCCchhhhhhcchhhcccceeecCCCCcceEeeehhcc
Confidence 37899999999999999999886 235666889999999 999999999999999999999999999999999877
Q ss_pred ---hcCC--C------------------ccccCcchhhhhhhhcccccCCCCC-------------------CCCCc-cH
Q psy8378 82 ---LTRL--P------------------KLFSNFVGDQYMSVFAICMPCTNPF-------------------KYNHY-TV 118 (230)
Q Consensus 82 ---l~~l--p------------------~l~~nf~~~~y~~vfgi~~~~in~~-------------------~l~~~-~~ 118 (230)
...+ | ++++||...+|..+||++.+|+++. -...+ .+
T Consensus 1096 gwae~lvrrPtgn~sw~~~~~np~~pf~~~i~nF~~~~~~~~F~~a~~~~~hrdt~~~~~~s~~aEs~ak~~p~~rs~~v 1175 (1697)
T KOG3687|consen 1096 GWAEILVRRPTGNTSWLMSLENPLSPFSSDINNFPLQELSNAFMAAERFKEHRDTALYKSLSVPAESTAKPPPLPRSNTV 1175 (1697)
T ss_pred chHHheeeCCCCCchhhhhccCCCCcchhhHhcCCHHHHhhhhhhhhhhhcCccccccCCCCCchhhhcCCCCCchhHHH
Confidence 3333 3 3668999999999999999999741 23334 67
Q ss_pred HHHHHHHHH-----------HHhhcccC
Q psy8378 119 SLAHHVIAV-----------WFLKCRYW 135 (230)
Q Consensus 119 ~lA~~vI~~-----------Wflr~R~w 135 (230)
+.|+..... |+.+.+.-
T Consensus 1176 A~A~sl~q~s~~g~~~~~~~w~~S~~~~ 1203 (1697)
T KOG3687|consen 1176 ASASSLYQSSCQGQLHRSVSWADSAVVM 1203 (1697)
T ss_pred HHHHHHHHHHhccccccccccccceeec
Confidence 778877776 88865443
No 31
>PLN02959 aminoacyl-tRNA ligase
Probab=97.35 E-value=2e-05 Score=82.94 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=14.1
Q ss_pred cCCccccccccc-hhhhh
Q psy8378 191 ETDTMDTFVDSA-WYYVR 207 (230)
Q Consensus 191 etDtmD~WfdSg-w~~~r 207 (230)
+.||||+||+|| |.+..
T Consensus 635 ~~dV~D~wF~Sg~~p~~t 652 (1084)
T PLN02959 635 TDEVWDFVFCGGPLPKSS 652 (1084)
T ss_pred CccceeEeecCCCccccc
Confidence 689999999999 66544
No 32
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=96.45 E-value=0.0017 Score=55.73 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=54.8
Q ss_pred cCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhH-----HHHHHHhcCCC--ccccCcc-------
Q psy8378 28 RGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPI-----LEFVSMLTRLP--KLFSNFV------- 93 (230)
Q Consensus 28 ~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~------- 93 (230)
.|..|...++|-+| =-++|.-|.-+. |..-+||++|+||. +||++.. +|| +++.+-.
T Consensus 81 ~Gv~tg~~aihP~t--~~~iPI~va~yV------l~~yGtgAVmgvPahD~rD~~FAk~~-~lpi~~Vi~~~~~~~~~~~ 151 (185)
T PF13603_consen 81 EGVFTGLYAIHPLT--GKKIPIYVANYV------LMDYGTGAVMGVPAHDERDFEFAKKY-NLPIKQVIKPKDDNEEIDN 151 (185)
T ss_dssp -EEEEEEEEE-TTT--S-EEEEEEETTS-------TTSTTSEEEE-CCC-HHHHHHHHHH-T------EEBSSSS---ST
T ss_pred ccCcCCCEEECCCC--CCCccEEEECce------eecCCcceEEEcCCCCHHHHHHHHHc-CCCeeEEEcCCCCcccccc
Confidence 34456667777665 455565554443 23459999999999 9999999 799 5553221
Q ss_pred -hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHH
Q psy8378 94 -GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWF 129 (230)
Q Consensus 94 -~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wf 129 (230)
.+.|.. -| ..+||+.|+|+...+|..+|..|.
T Consensus 152 ~~~~~~~-~G---~l~nS~~f~Gl~~~eA~~~I~~~L 184 (185)
T PF13603_consen 152 KQEAYTG-DG---ILINSGEFNGLSSKEAREKIIKKL 184 (185)
T ss_dssp TSS---S------EE-SSGGGTTSBHHHHHHHHHHHH
T ss_pred cccCcCC-CE---EEEeCCCCCCCCHHHHHHHHHHHh
Confidence 123433 67 567999999999999999999885
No 33
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=95.67 E-value=0.0034 Score=56.96 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.3
Q ss_pred CCccccccccchhhhhhcC
Q psy8378 192 TDTMDTFVDSAWYYVRYLG 210 (230)
Q Consensus 192 tDtmD~WfdSgw~~~ry~~ 210 (230)
.+++||||||+.+|+.+..
T Consensus 195 ~~~i~~Wfds~~~~~~~~~ 213 (312)
T cd00668 195 EDVFDVWFDSGIGPLGSLG 213 (312)
T ss_pred cccccchhhccHHHHHHcC
Confidence 6899999999977776654
No 34
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=95.51 E-value=0.0066 Score=63.07 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=17.7
Q ss_pred HHHHHh-hcccCCCccce---EecCC
Q psy8378 125 IAVWFL-KCRYWGTPIPM---VHCPS 146 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi---~~~~~ 146 (230)
+.+|++ |||+||+|||+ |.++.
T Consensus 437 l~DW~ISRqr~WGtpiP~~~~w~~es 462 (897)
T PRK12300 437 LKDRACARRRGLGTRLPWDEEWIIES 462 (897)
T ss_pred hhhcceeeccccCCcCCccCCEEeee
Confidence 678877 89999999995 66554
No 35
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.12 E-value=0.092 Score=47.96 Aligned_cols=21 Identities=52% Similarity=1.072 Sum_probs=17.4
Q ss_pred CCccccccccchhhhhhcCCC
Q psy8378 192 TDTMDTFVDSAWYYVRYLGSG 212 (230)
Q Consensus 192 tDtmD~WfdSgw~~~ry~~p~ 212 (230)
.++++|||||.||++.|+...
T Consensus 182 ~~~i~~w~ds~~y~~~y~~~~ 202 (314)
T cd00812 182 TDTMESLSDSTWYYARYTDAH 202 (314)
T ss_pred ccccccccccHHHHHHHHhcc
Confidence 568999999999999887543
No 36
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=89.92 E-value=0.08 Score=53.04 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCccccccccchhhhhhc
Q psy8378 192 TDTMDTFVDSAWYYVRYL 209 (230)
Q Consensus 192 tDtmD~WfdSgw~~~ry~ 209 (230)
..|++|||||+..|+...
T Consensus 222 ~~v~yVWfDA~~~y~s~~ 239 (648)
T PRK12267 222 KHVVYVWIDALLNYITAL 239 (648)
T ss_pred CCEEEEcccchHHHHHHc
Confidence 469999999996555443
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=82.86 E-value=0.4 Score=46.17 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=12.7
Q ss_pred CCccccccccchhhhhh
Q psy8378 192 TDTMDTFVDSAWYYVRY 208 (230)
Q Consensus 192 tDtmD~WfdSgw~~~ry 208 (230)
..+++|||||++.|...
T Consensus 219 ~~~~~vWfda~~~y~s~ 235 (511)
T PRK11893 219 KHVIYVWFDALTNYLTA 235 (511)
T ss_pred CceEEEEecCcHHHHhH
Confidence 46888999999666544
No 38
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=78.34 E-value=0.59 Score=45.76 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHh-hcccCCCccceEecCC
Q psy8378 127 VWFL-KCRYWGTPIPMVHCPS 146 (230)
Q Consensus 127 ~Wfl-r~R~wg~pIPi~~~~~ 146 (230)
+|++ |||.||.||| |++.+
T Consensus 228 Dw~ISR~~~WGipiP-~~~~~ 247 (556)
T PRK12268 228 PRAITRDLDWGIPVP-WPGFE 247 (556)
T ss_pred CcCceeeCCCCeeCC-CCCCC
Confidence 7777 7899999999 77554
No 39
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=73.13 E-value=1.6 Score=45.96 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.0
Q ss_pred HHHHHh-hcccCCCccce
Q psy8378 125 IAVWFL-KCRYWGTPIPM 141 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi 141 (230)
+.+|++ |||+||+|||.
T Consensus 484 l~DW~ISRqr~WGtpIP~ 501 (938)
T TIGR00395 484 LKDWACCRRYGLGTRLPW 501 (938)
T ss_pred hhhcccccccccCcccce
Confidence 778877 89999999994
No 40
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=39.83 E-value=1e+02 Score=26.02 Aligned_cols=84 Identities=14% Similarity=0.155 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhhcccc-ccCccchhhHHHHHHHHHH---hhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHHhcCC
Q psy8378 10 LLRYLGKCYNAAVTTES-ERGYSRQEKCITALTTCTL---EMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRL 85 (230)
Q Consensus 10 ~q~~iv~~~~~gl~~~~-~~~~~~~~~Ci~aLtic~~---E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~l~~l 85 (230)
..++.-..++.||..-- ..+-++.+....||.=-+- +=+..+...+..++.-+..-....-+.||+|+++..|=.
T Consensus 80 ~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~- 158 (193)
T PF12612_consen 80 DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS- 158 (193)
T ss_pred ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh-
Confidence 33555666777773221 1112457888888887775 345666666777777776556666699999999998832
Q ss_pred CccccCcch
Q psy8378 86 PKLFSNFVG 94 (230)
Q Consensus 86 p~l~~nf~~ 94 (230)
-.++..+..
T Consensus 159 ~~~~~~~~~ 167 (193)
T PF12612_consen 159 SGVFDSLPE 167 (193)
T ss_pred Ccchhcccc
Confidence 245555443
No 41
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=38.44 E-value=30 Score=28.69 Aligned_cols=14 Identities=50% Similarity=1.163 Sum_probs=11.8
Q ss_pred CCCCCCCCCceecC
Q psy8378 179 SCPKCGHGGARRET 192 (230)
Q Consensus 179 ~~~~~g~~~~~ret 192 (230)
.||+||+..|.|.+
T Consensus 132 ~Cp~C~~~~F~R~~ 145 (146)
T PF07295_consen 132 PCPKCGHTEFTRQP 145 (146)
T ss_pred CCCCCCCCeeeeCC
Confidence 49999988998864
No 42
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=32.73 E-value=23 Score=22.40 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.2
Q ss_pred ccceEecCCCCcccCCC
Q psy8378 138 PIPMVHCPSCGPVPVPY 154 (230)
Q Consensus 138 pIPi~~~~~~~~~~v~~ 154 (230)
-+|.|+|.+||+..+++
T Consensus 29 ~vp~~~C~~CGE~~~~~ 45 (46)
T TIGR03831 29 NVPALVCPQCGEEYLDA 45 (46)
T ss_pred CCCccccccCCCEeeCC
Confidence 47999999998866543
No 43
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=32.68 E-value=9.3 Score=37.23 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.6
Q ss_pred HHHHh-hccc-CCCccceE
Q psy8378 126 AVWFL-KCRY-WGTPIPMV 142 (230)
Q Consensus 126 ~~Wfl-r~R~-wg~pIPi~ 142 (230)
.+|.+ |++. ||.|+|.+
T Consensus 225 ~d~~iSR~~~~WGipvP~~ 243 (530)
T TIGR00398 225 KDLAITRDLVYWGIPVPND 243 (530)
T ss_pred CCccccCcCCCCCeeCCCC
Confidence 35666 7899 99999977
No 44
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=24.64 E-value=33 Score=21.89 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=9.7
Q ss_pred cchhhhhhhhcc
Q psy8378 92 FVGDQYMSVFAI 103 (230)
Q Consensus 92 f~~~~y~~vfgi 103 (230)
++++||..|||+
T Consensus 2 Lsd~dF~~vFgm 13 (36)
T PF02209_consen 2 LSDEDFEKVFGM 13 (36)
T ss_dssp S-HHHHHHHHSS
T ss_pred cCHHHHHHHHCC
Confidence 578999999996
No 45
>smart00153 VHP Villin headpiece domain.
Probab=24.51 E-value=35 Score=21.69 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=10.3
Q ss_pred cchhhhhhhhcc
Q psy8378 92 FVGDQYMSVFAI 103 (230)
Q Consensus 92 f~~~~y~~vfgi 103 (230)
+++++|..|||+
T Consensus 2 LsdeeF~~vfgm 13 (36)
T smart00153 2 LSDEDFEEVFGM 13 (36)
T ss_pred CCHHHHHHHHCC
Confidence 468999999996
No 46
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.81 E-value=2.4e+02 Score=22.84 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=51.4
Q ss_pred cchhhhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhh-ccccch----hhhhHHHHHH
Q psy8378 6 WMLGLLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSK-ISITTS----IAIPILEFVS 80 (230)
Q Consensus 6 ~~~~~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~-i~t~~~----mAvpilEFl~ 80 (230)
|...-++.+..++...+.+.. +.+-..+.+.+..+...+...++..+..++..+-. +..... .=+-+||.+.
T Consensus 66 l~~~lk~~l~~~Ll~~~~~~~---~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~ 142 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLSSSD---FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR 142 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 344456777777776665432 34566677777777777777777777666666655 322222 2233699999
Q ss_pred HhcCCCccc
Q psy8378 81 MLTRLPKLF 89 (230)
Q Consensus 81 ~l~~lp~l~ 89 (230)
.+.+-|+..
T Consensus 143 ~l~~~p~~l 151 (168)
T PF12783_consen 143 ELCKDPQFL 151 (168)
T ss_pred HHHhChhHH
Confidence 998888433
Done!