Query psy8378
Match_columns 230
No_of_seqs 219 out of 1407
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:07:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 99.9 2.9E-28 1E-32 246.0 5.2 154 64-228 349-540 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 99.9 2.8E-26 9.7E-31 231.6 3.6 153 65-226 332-526 (878)
3 1gax_A Valrs, valyl-tRNA synth 99.5 2.7E-14 9.3E-19 144.1 6.0 77 125-216 397-475 (862)
4 1ffy_A Isoleucyl-tRNA syntheta 99.4 1.3E-15 4.6E-20 154.4 -6.9 90 126-222 449-550 (917)
5 1ile_A Ilers, isoleucyl-tRNA s 99.4 2.5E-14 8.7E-19 143.3 1.7 88 124-214 440-535 (821)
6 2ajg_A Leucyl-tRNA synthetase; 92.8 0.091 3.1E-06 43.8 4.1 64 64-132 112-189 (196)
7 2x1l_A Methionyl-tRNA syntheta 89.6 0.02 7E-07 53.9 -3.4 20 193-212 234-254 (524)
8 3o0a_A Leucyl-tRNA synthetase 87.3 0.39 1.3E-05 40.8 3.4 64 64-132 133-208 (219)
9 1wny_A Isoleucyl-tRNA syntheta 85.4 1 3.5E-05 37.0 4.9 55 64-132 113-174 (186)
10 1wka_A Valyl-tRNA synthetase; 80.9 1.7 5.8E-05 34.4 4.3 55 64-132 72-137 (147)
11 2wfg_A Cytosolic leucyl-tRNA s 72.4 2.3 7.9E-05 36.9 3.1 23 110-132 221-243 (261)
12 2wfd_A Leucyl-tRNA synthetase, 63.5 5.8 0.0002 34.1 3.8 26 106-132 219-244 (252)
13 4dlp_A Aminoacyl-tRNA syntheta 44.3 5 0.00017 37.7 0.2 24 191-214 244-268 (536)
14 1wkb_A Leucyl-tRNA synthetase; 43.7 3.4 0.00012 41.0 -1.2 15 127-141 505-520 (810)
15 1rqg_A Methionyl-tRNA syntheta 42.8 3.4 0.00011 40.7 -1.3 13 131-143 231-243 (722)
16 1wz2_A Leucyl-tRNA synthetase; 38.1 3.3 0.00011 42.2 -2.3 15 127-141 505-520 (967)
17 3kfl_A Methionyl-tRNA syntheta 26.3 9.4 0.00032 36.2 -1.2 17 191-207 253-269 (564)
18 1wy3_A Villin; structural prot 25.7 21 0.00071 21.8 0.7 12 92-103 1-12 (35)
19 2d5b_A Methionyl-tRNA syntheta 24.1 15 0.0005 33.9 -0.3 19 191-209 220-238 (500)
20 1und_A Advillin, P92; actin bi 24.0 23 0.0008 21.8 0.7 12 92-103 3-14 (37)
21 1sz9_A PCF11 protein; RNA poly 23.0 2.6E+02 0.0089 21.5 7.2 68 10-83 4-71 (144)
22 2elk_A SPCC24B10.08C protein; 22.3 62 0.0021 21.1 2.7 37 2-38 8-50 (58)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.94 E-value=2.9e-28 Score=246.02 Aligned_cols=154 Identities=30% Similarity=0.506 Sum_probs=124.2
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--ccccC-------cchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHH-
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSN-------FVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVW- 128 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n-------f~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~W- 128 (230)
.-|||++|++|+ +||++.. +|| .++.. .+.+.|.. .| ..+|++.|+|+.+.+|...|..|
T Consensus 349 ~~GTGaV~~~Pahd~~D~~~~~~~-~Lpi~~vi~~~~~~~~~~~~~~~~~-~g---~~~ns~~~~Gl~~~eA~~~ii~~L 423 (880)
T 4arc_A 349 EYGTGAVMAVPGHDQRDYEFASKY-GLNIKPVILAADGSEPDLSQQALTE-KG---VLFNSGEFNGLDHEAAFNAIADKL 423 (880)
T ss_dssp SSTTSEEEECTTTCHHHHHHHHHH-TCCCCCCBCCTTSCCCCCSSSCCCS-CC---CBCSSGGGTTCCHHHHHHHHHHHH
T ss_pred CCCCceEEEccCCCHHHHHHHHHc-CCCceEeeccCcccccccccccccC-Cc---eeecCcccCCCCHHHHHHHHHHHH
Confidence 348999999999 9999999 899 44432 11223332 45 35689999999999999988866
Q ss_pred -----------------Hh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCC-----CCCCCCCcccccccCCCCCCC
Q psy8378 129 -----------------FL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPS-----PPLPLASNAEWQHCSCPKCGH 185 (230)
Q Consensus 129 -----------------fl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~-----~~~p~g~~~~w~~~~~~~~g~ 185 (230)
++ ||||||+|||||||++||.+.+++++||+.||++ .++|+..+..|....|| |
T Consensus 424 ~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp--g- 500 (880)
T 4arc_A 424 TAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN--G- 500 (880)
T ss_dssp HHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS--S-
T ss_pred HHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccC--C-
Confidence 33 7999999999999999999999999999988863 23677777788777788 5
Q ss_pred CCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccccc
Q psy8378 186 GGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRY 228 (230)
Q Consensus 186 ~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~~y 228 (230)
..++||||||||||||||||+||++|+|++.. ++++..+|
T Consensus 501 ~~~~retDtmDtw~dSswy~~r~~~p~~~~~~---~~~~~~~~ 540 (880)
T 4arc_A 501 MPALRETDTFDTFMESSWYYARYTCPQYKEGM---LDSEAANY 540 (880)
T ss_dssp SEEEECCCEECTTTGGGTHHHHTTSTTCCSSS---CCHHHHHH
T ss_pred CcceeCCCcCCCcccCcHHHHhhcCCCccccc---cChHHHhc
Confidence 47999999999999999999999999988765 66654443
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.92 E-value=2.8e-26 Score=231.57 Aligned_cols=153 Identities=39% Similarity=0.758 Sum_probs=121.8
Q ss_pred ccccchhhhhH-----HHHHHHhcCCC--ccccC--cc-----hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHH--
Q psy8378 65 ISITTSIAIPI-----LEFVSMLTRLP--KLFSN--FV-----GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVW-- 128 (230)
Q Consensus 65 i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n--f~-----~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~W-- 128 (230)
-|||++|++|+ +||++.. +|| .++.. -. .+.|.. .| ..+|++.|+|+.+.+|...|..|
T Consensus 332 ~GTG~V~~~PaHd~~D~~~~~k~-~L~i~~vi~~~~~~~~~~~~~~~~~-~g---~~~ns~~~~Gl~~~eA~~~Ii~~L~ 406 (878)
T 2v0c_A 332 YGTGAIMAVPAHDQRDYEFARKF-GLPIKKVIERPGEPLPEPLERAYEE-PG---IMVNSGPFDGTESEEGKRKVIAWLE 406 (878)
T ss_dssp STTSEEEECTTTCHHHHHHHHHH-TCCCCCCEECSSSCCCSSCSSCCCS-CC---EECSSGGGTTCBHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCHHHHHHHHHc-CCCceeeeCCCCccccccccccccC-Ce---eEecCCCCCCcCHHHHHHHHHHHHH
Confidence 48999999999 9999999 888 44431 00 122321 34 44688899999999999888765
Q ss_pred ----------------Hh-hcccCCCccceEecCCCCcccCCCCCCCCCCCC---------CCCCCCCCcccccccCCCC
Q psy8378 129 ----------------FL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPP---------SPPLPLASNAEWQHCSCPK 182 (230)
Q Consensus 129 ----------------fl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~---------~~~~p~g~~~~w~~~~~~~ 182 (230)
++ |||+||+|||+|||++|+.+.+++++||+.||+ .+.+|+.....|....||+
T Consensus 407 ~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 407 EKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp HHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred HCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence 44 899999999999999999999999999988773 1456777777787778999
Q ss_pred CCCCCceecCCccccccccchhhhhhcCCCCCCCCCCCCCcccc
Q psy8378 183 CGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGS 226 (230)
Q Consensus 183 ~g~~~~~retDtmD~WfdSgw~~~ry~~p~~~~~~~~~~~~~~~ 226 (230)
||+ .++||+|||||||||||||+||++|+|++.. ++++..
T Consensus 487 cg~-~~~retDtmDtwfdSsw~~~~~~~p~~~~~~---~~~~~~ 526 (878)
T 2v0c_A 487 CGG-PAKRDTDTMDTFFDSSWYYLRYTDPHNDRLP---FDPEKA 526 (878)
T ss_dssp TCS-EEEECCCEECHHHHHTSHHHHTTSTTCSSSS---CCHHHH
T ss_pred CCC-cceeccccccccccccchhhhccCccccccc---cCHHHH
Confidence 985 7999999999999999999999999987654 555433
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.47 E-value=2.7e-14 Score=144.14 Aligned_cols=77 Identities=27% Similarity=0.568 Sum_probs=58.4
Q ss_pred HHHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCceecCCccccccccc-
Q psy8378 125 IAVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSA- 202 (230)
Q Consensus 125 I~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~~~~~~~~g~~~~~retDtmD~WfdSg- 202 (230)
+.+|++ |||+||.|||+|||++|+.+.+...++ +.. .+ ..|+.||+..++|++||||||||||
T Consensus 397 l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~---l~~-------~~-----~~~~~~g~~~~~r~~DvlDtWfdS~~ 461 (862)
T 1gax_A 397 VKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPER---YLE-------DP-----TSCEACGSPRLKRDEDVFDTWFSSAL 461 (862)
T ss_dssp CCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGG---TTC-------CC-----CSCTTTCCSCEEECCCCBCHHHHHTS
T ss_pred ccceeEecccCCCcccCceecCCCCEEEEecccc---ccc-------cc-----hhhhhcCchheecCCcccceeeccCC
Confidence 446777 899999999999999988766644222 111 00 1467788668999999999999999
Q ss_pred hhhhhhcCCCCCCC
Q psy8378 203 WYYVRYLGSGGDPN 216 (230)
Q Consensus 203 w~~~ry~~p~~~~~ 216 (230)
|+|.++.+|+|++.
T Consensus 462 ~~~~~~~~p~~~~~ 475 (862)
T 1gax_A 462 WPLSTLGWPEETED 475 (862)
T ss_dssp CTTGGGTTTSCCHH
T ss_pred cchhhccCCCchHH
Confidence 99999999976543
No 4
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.43 E-value=1.3e-15 Score=154.45 Aligned_cols=90 Identities=24% Similarity=0.432 Sum_probs=57.3
Q ss_pred HHHHh-hcccCCCccceEecCCCCcccCCCCCCCCCCCCCCCCCCCCccccc---------ccCCCCCCCCCceecCCcc
Q psy8378 126 AVWFL-KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQ---------HCSCPKCGHGGARRETDTM 195 (230)
Q Consensus 126 ~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~~~Lp~~lp~~~~~p~g~~~~w~---------~~~~~~~g~~~~~retDtm 195 (230)
.+|++ |||+||+|||+|||++ +...++++ +...+++ .....|.+.||. ...||+||+..++|++|||
T Consensus 449 ~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~-~~~~i~~-~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~l 525 (917)
T 1ffy_A 449 GEWVISRQRVWGVPLPVFYAEN-GEIIMTKE-TVNHVAD-LFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM 525 (917)
T ss_dssp CCEECEESCSSSCBCCCEECTT-SCEECCHH-HHHHHHH-HHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEE
T ss_pred ccceeeccCCcCcccceeeCCC-CCEecCHH-HHHHHHH-HhhhcCCcccccCCHHHhcccccccccCCcccccccCCCc
Confidence 36766 8999999999999988 55555443 2111111 001124444542 1358889866899999999
Q ss_pred ccccccc--hhhhhhcCCCCCCCCCCCCC
Q psy8378 196 DTFVDSA--WYYVRYLGSGGDPNVRLPDQ 222 (230)
Q Consensus 196 D~WfdSg--w~~~ry~~p~~~~~~~~~~~ 222 (230)
||||||| |+++. +. ++++.+|+|
T Consensus 526 D~WfdSg~~~~~~l--~~--~~~~~~P~D 550 (917)
T 1ffy_A 526 DVWFDSGSSHRGVL--ET--RPELSFPAD 550 (917)
T ss_dssp CHHHHHHTHHHHTT--TT--STTCCSSBS
T ss_pred CeecCCCCCHHHHc--CC--chhcCCCce
Confidence 9999998 55552 21 123446766
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.42 E-value=2.5e-14 Score=143.30 Aligned_cols=88 Identities=27% Similarity=0.551 Sum_probs=55.3
Q ss_pred HHHHHHh-hcccCCCccceEecCCCCcccCCC--CCC---CCCCCCCCCCCCC-CcccccccCCCCCCCCCceecCCccc
Q psy8378 124 VIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY--EAL---PITLPPSPPLPLA-SNAEWQHCSCPKCGHGGARRETDTMD 196 (230)
Q Consensus 124 vI~~Wfl-r~R~wg~pIPi~~~~~~~~~~v~~--~~L---p~~lp~~~~~p~g-~~~~w~~~~~~~~g~~~~~retDtmD 196 (230)
.+.+|++ |||+||.|||+|+|++|+...+.+ ++| ....+. +...+. ...+|....|| || ..++|++||||
T Consensus 440 ~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~-~~~~l~~~~~d~~~~~~~-~g-~~~~r~~dvld 516 (821)
T 1ile_A 440 NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLP-EPFDPHRPYVDQVELACA-CG-GTMRRVPYVID 516 (821)
T ss_dssp TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCC-SSCCCSHHHHTTCEEECT-TS-SEEEECSCBCC
T ss_pred CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhcccccc-chhhhccccccccccCCC-CC-Cchhhcccccc
Confidence 3568877 899999999999999988755543 122 111100 000111 01122334587 88 47999999999
Q ss_pred cccccchh-hhhhcCCCCC
Q psy8378 197 TFVDSAWY-YVRYLGSGGD 214 (230)
Q Consensus 197 ~WfdSgw~-~~ry~~p~~~ 214 (230)
|||||||+ +.....|.++
T Consensus 517 ~WfdS~~~~~~~~~~p~~~ 535 (821)
T 1ile_A 517 VWYDSGAMPFASLHYPFEH 535 (821)
T ss_dssp HHHHHHHHHHHTTTTTTSC
T ss_pred eecccccchHhhcCCCccc
Confidence 99999954 4555567543
No 6
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=92.81 E-value=0.091 Score=43.80 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=47.7
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--cccc-------CcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHH
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFS-------NFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWF 129 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~-------nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wf 129 (230)
.-|||++|++|. ++|++.. +|| .++. +..+.-|.. .| ..+|++.|+|+.+..|...|..++
T Consensus 112 ~~GTG~V~~aPah~~~D~~~~~k~-~L~i~~vI~~~~g~~~d~~~g~y~~-~g---~~~ns~~~~Gl~v~eA~~~Ii~~L 186 (196)
T 2ajg_A 112 EYGTGAVMAVPGHDQRDYEFASKY-GLNIKPVILAADGSEPDLSQQALTE-KG---VLFNSGEFNGLDHEAAFNAIADKL 186 (196)
T ss_dssp SSSCSEEEECTTTCHHHHHHHHHH-TCCCCCCBCCTTSSCCCCSSSCCCS-CC---CBCSSGGGTTCCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCHHHHHHHHHc-CCCceeEEeCCcCcccccccccccC-Cc---eEecCcccCCeEHHHHHHHHHHHH
Confidence 348999999999 9999998 788 4553 211222332 33 456888999999999999999998
Q ss_pred hhc
Q psy8378 130 LKC 132 (230)
Q Consensus 130 lr~ 132 (230)
..+
T Consensus 187 ~~~ 189 (196)
T 2ajg_A 187 TAM 189 (196)
T ss_dssp HHT
T ss_pred HHC
Confidence 754
No 7
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=89.65 E-value=0.02 Score=53.93 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=13.8
Q ss_pred Cccccccccchhhhhhc-CCC
Q psy8378 193 DTMDTFVDSAWYYVRYL-GSG 212 (230)
Q Consensus 193 DtmD~WfdSgw~~~ry~-~p~ 212 (230)
+||||||||+|.|+... .|.
T Consensus 234 ~~~yvWfds~~~~~~~~g~p~ 254 (524)
T 2x1l_A 234 HVMYVWVDALTNYLTGVGFPD 254 (524)
T ss_dssp EEECHHHHHHTHHHHTTTTTC
T ss_pred CEEEEecCCchHHHHHcCCCC
Confidence 47899999997765433 354
No 8
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=87.33 E-value=0.39 Score=40.85 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=47.0
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--ccccC---cc--hhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhh
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSN---FV--GDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLK 131 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~n---f~--~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr 131 (230)
.-|||++|++|. ++|++.. +|| .++.+ .. +..|.. .| .++|++.|+|+.+..|...|..++..
T Consensus 133 ~~GTGaV~~aPaHd~~D~~~~~k~-~Lpi~~vi~~~~~~~~~~g~ft~-~g---~~~~~~~~~Gl~~~eA~~~Ii~~L~~ 207 (219)
T 3o0a_A 133 EYGTGAIMCVPAHDQRDWEFAKKY-DLPIKVVVKPEGAWDFEKGAYEG-KG---TLVNSDGFDGLDSETAKRKITEWLQD 207 (219)
T ss_dssp TSTTSEEEECTTTCHHHHHHHHHH-TCCCCCCEECSSCCCTTTCCCCS-CC---EECSCGGGTTCBHHHHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCHHHHHHHHHc-CCCceeeeCCccccccccccccc-cc---eEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 348999999999 9999998 888 44432 10 122221 34 45678899999999999999999875
Q ss_pred c
Q psy8378 132 C 132 (230)
Q Consensus 132 ~ 132 (230)
+
T Consensus 208 ~ 208 (219)
T 3o0a_A 208 R 208 (219)
T ss_dssp T
T ss_pred C
Confidence 4
No 9
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=85.37 E-value=1 Score=36.97 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=43.3
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--ccccCcchhhhhhhhcccccCCCCCCCCCccHHHHHHHHHHHHhhc
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSNFVGDQYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFLKC 132 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~~~~y~~vfgi~~~~in~~~l~~~~~~lA~~vI~~Wflr~ 132 (230)
.-|||++|++|. ++|++.. +|| .++.+ .| .|++++ |+|+.+..|-..|..++..+
T Consensus 113 ~~GTG~V~~aPahg~~D~~~~~~~-~L~i~~~id~---------~G---~~~~~~-~~Gl~v~~A~~~Ii~~L~~~ 174 (186)
T 1wny_A 113 EDGTGIVHQAPAFGAEDLETARVY-GLPLLKTVDE---------EG---KLLVEP-FKGLYFREANRAILRDLRGR 174 (186)
T ss_dssp SSSCSCEEECGGGCHHHHHHHHHH-TCCCCCCBCT---------TS---BBCSTT-CTTCBHHHHHHHHHHHHHHT
T ss_pred CCCcccEEEcCCCCHHHHHHHHHc-CCceEeeeCC---------Cc---cCccCC-CCCcCHHHHHHHHHHHHHHC
Confidence 349999999999 9999998 787 33321 25 566556 99999999999999998754
No 10
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=80.94 E-value=1.7 Score=34.43 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=42.9
Q ss_pred hccccchhhhhH-----HHHHHHhcCCC--ccccCcchhhhhhhhcccccCCCCCC----CCCccHHHHHHHHHHHHhhc
Q psy8378 64 KISITTSIAIPI-----LEFVSMLTRLP--KLFSNFVGDQYMSVFAICMPCTNPFK----YNHYTVSLAHHVIAVWFLKC 132 (230)
Q Consensus 64 ~i~t~~~mAvpi-----lEFl~~l~~lp--~l~~nf~~~~y~~vfgi~~~~in~~~----l~~~~~~lA~~vI~~Wflr~ 132 (230)
.-|||++|++|. ++|.+.. +|| .++.+ .| .+ |++. |+|+.+..|-..|..++..+
T Consensus 72 ~~GTG~V~~~Pah~~~D~~~~~~~-~L~~~~~id~---------~G---~~-~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~ 137 (147)
T 1wka_A 72 DFGTGALKVTPAHDPLDYEIGERH-GLKPVSVINL---------EG---RM-EGERVPEALRGLDRFEARRKAVELFREA 137 (147)
T ss_dssp TSTTSEEEECTTTCHHHHHHHHHH-TCCCCCSBCT---------TS---BB-CSTTSCGGGTTSBHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEccCCCHHHHHHHHHc-CCCcceEECC---------CC---EE-cCCCcccccCCcCHHHHHHHHHHHHHHC
Confidence 348999999999 8999998 787 33322 35 34 6665 99999999999999998743
No 11
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=72.41 E-value=2.3 Score=36.90 Aligned_cols=23 Identities=17% Similarity=-0.026 Sum_probs=20.3
Q ss_pred CCCCCCccHHHHHHHHHHHHhhc
Q psy8378 110 PFKYNHYTVSLAHHVIAVWFLKC 132 (230)
Q Consensus 110 ~~~l~~~~~~lA~~vI~~Wflr~ 132 (230)
++.|+|..+..|...|..|+..+
T Consensus 221 ~g~f~Gl~v~eA~~~Ii~~L~~~ 243 (261)
T 2wfg_A 221 IGKYKGDKVEDAKPKVKQDLIDE 243 (261)
T ss_dssp SSTTTTSBHHHHHHHHHHHHHHT
T ss_pred ccccCCeEHHHHHHHHHHHHHHC
Confidence 57899999999999999998754
No 12
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=63.51 E-value=5.8 Score=34.05 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=21.9
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHhhc
Q psy8378 106 PCTNPFKYNHYTVSLAHHVIAVWFLKC 132 (230)
Q Consensus 106 ~~in~~~l~~~~~~lA~~vI~~Wflr~ 132 (230)
.++ ++.|+|..+..|...|..|+..+
T Consensus 219 ~~~-~~~~~Gl~v~eA~~~Ii~~L~~~ 244 (252)
T 2wfd_A 219 IML-VDGFKGQKVQDVKKTIQKKMIDA 244 (252)
T ss_dssp EEC-STTSTTCBHHHHHHHHHHHHHHT
T ss_pred eEe-eeccCCeEHHHHHHHHHHHHHHC
Confidence 344 67899999999999999998754
No 13
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=44.33 E-value=5 Score=37.72 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=16.8
Q ss_pred cCCccccccccchhhhhhc-CCCCC
Q psy8378 191 ETDTMDTFVDSAWYYVRYL-GSGGD 214 (230)
Q Consensus 191 etDtmD~WfdSgw~~~ry~-~p~~~ 214 (230)
+.+|++|||||++.|+... .|.++
T Consensus 244 ~~~v~yvWfda~~~y~s~~~~~~~~ 268 (536)
T 4dlp_A 244 EKHVMYVWVDALTNYITALGYPDTT 268 (536)
T ss_dssp TTSEECHHHHHHHHHHHTTTTTCTT
T ss_pred CCCceEEeeCCcHHHHHhcCCCCCc
Confidence 4689999999996665443 35433
No 14
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=43.69 E-value=3.4 Score=41.00 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=12.2
Q ss_pred HHHh-hcccCCCccce
Q psy8378 127 VWFL-KCRYWGTPIPM 141 (230)
Q Consensus 127 ~Wfl-r~R~wg~pIPi 141 (230)
+|++ |||.||+|||.
T Consensus 505 Dw~ISRq~~WG~piP~ 520 (810)
T 1wkb_A 505 KKACARKIGLGTPLPW 520 (810)
T ss_dssp CEECEESSSBSCEETT
T ss_pred CccccccCCCCCcCCc
Confidence 4555 89999999993
No 15
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=42.84 E-value=3.4 Score=40.73 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=11.6
Q ss_pred hcccCCCccceEe
Q psy8378 131 KCRYWGTPIPMVH 143 (230)
Q Consensus 131 r~R~wg~pIPi~~ 143 (230)
|++.||.|||+++
T Consensus 231 R~~~WG~piP~~~ 243 (722)
T 1rqg_A 231 RDLNWGIPVPLDE 243 (722)
T ss_dssp ECCSSSCBCSCCC
T ss_pred ccccCccccCccc
Confidence 6899999999975
No 16
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=38.13 E-value=3.3 Score=42.16 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=12.4
Q ss_pred HHHh-hcccCCCccce
Q psy8378 127 VWFL-KCRYWGTPIPM 141 (230)
Q Consensus 127 ~Wfl-r~R~wg~pIPi 141 (230)
+|++ |||.||+|||.
T Consensus 505 DW~ISRqr~WG~piP~ 520 (967)
T 1wz2_A 505 KKACARKIGLGTPLPW 520 (967)
T ss_dssp EECCCBSSSSSEECTT
T ss_pred CeeeccCCCCCccCCc
Confidence 4555 89999999995
No 17
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=26.33 E-value=9.4 Score=36.24 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=13.7
Q ss_pred cCCccccccccchhhhh
Q psy8378 191 ETDTMDTFVDSAWYYVR 207 (230)
Q Consensus 191 etDtmD~WfdSgw~~~r 207 (230)
+.+|++|||||++.|+.
T Consensus 253 ~~~v~yVWfDa~~~y~s 269 (564)
T 3kfl_A 253 ERHCIYVWLDALFNYYT 269 (564)
T ss_dssp EEEEECHHHHHHTHHHH
T ss_pred CCCEEEEeccCcHHHHH
Confidence 57899999999966553
No 18
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.69 E-value=21 Score=21.79 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=10.2
Q ss_pred cchhhhhhhhcc
Q psy8378 92 FVGDQYMSVFAI 103 (230)
Q Consensus 92 f~~~~y~~vfgi 103 (230)
++++||..|||+
T Consensus 1 Lsd~dF~~vFgm 12 (35)
T 1wy3_A 1 LSDEDFKAVFGM 12 (35)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHCC
Confidence 468899999996
No 19
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=24.06 E-value=15 Score=33.93 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.6
Q ss_pred cCCccccccccchhhhhhc
Q psy8378 191 ETDTMDTFVDSAWYYVRYL 209 (230)
Q Consensus 191 etDtmD~WfdSgw~~~ry~ 209 (230)
+.+|+||||||++.|+...
T Consensus 220 ~~~v~~vWfds~~~y~~~~ 238 (500)
T 2d5b_A 220 ENHVTFVWFDALLNYVSAL 238 (500)
T ss_dssp EEEEECHHHHHHTHHHHTT
T ss_pred CCCeeEEccccchhhHHHc
Confidence 4579999999997666543
No 20
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=24.00 E-value=23 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=10.6
Q ss_pred cchhhhhhhhcc
Q psy8378 92 FVGDQYMSVFAI 103 (230)
Q Consensus 92 f~~~~y~~vfgi 103 (230)
++++||..|||+
T Consensus 3 Lsd~dF~~vFgm 14 (37)
T 1und_A 3 LSEQDFVSVFGI 14 (37)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHCc
Confidence 578999999996
No 21
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.99 E-value=2.6e+02 Score=21.48 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhhccccccCccchhhHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccccchhhhhHHHHHHHhc
Q psy8378 10 LLRYLGKCYNAAVTTESERGYSRQEKCITALTTCTLEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLT 83 (230)
Q Consensus 10 ~q~~iv~~~~~gl~~~~~~~~~~~~~Ci~aLtic~~E~p~s~~k~l~~il~~ls~i~t~~~mAvpilEFl~~l~ 83 (230)
+-++++..|...|..-. ..+++.|+.||..|.|=...-....-.|-..+. .+.+.--+|.|..+-.+.
T Consensus 4 ~~~~~~~~f~~~L~~L~----~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~--k~~p~~KL~~LYL~DsIv 71 (144)
T 1sz9_A 4 DTEVIVKDFNSILEELT----FNSRPIITTLTKLAEENISCAQYFVDAIESRIE--KCMPKQKLYAFYALDSIC 71 (144)
T ss_dssp HHHHHHHHHHHHHTTCS----SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHhhHHHHHHHHHHHH
Confidence 45688999998886442 359999999999999954332222233333332 244455666666666654
No 22
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=22.25 E-value=62 Score=21.06 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=23.8
Q ss_pred cccccchhhhHHHHHHHH-Hhhccccc-----cCccchhhHHH
Q psy8378 2 VGKHWMLGLLRYLGKCYN-AAVTTESE-----RGYSRQEKCIT 38 (230)
Q Consensus 2 y~~~~~~~~q~~iv~~~~-~gl~~~~~-----~~~~~~~~Ci~ 38 (230)
++.-|+..+...|++++. +|.++|.+ .+++|+++|..
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~ 50 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRD 50 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHH
Confidence 456678888777777764 67666652 21456777753
Done!