RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8378
(230 letters)
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 50.7 bits (120), Expect = 4e-08
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCS---CPKCGHGGAR 189
RYWGTP+P+ C +CG + + PLP + + G R
Sbjct: 261 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320
Query: 190 RETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSRYC 229
R +D + DS L + +
Sbjct: 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIA 360
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 43.8 bits (102), Expect = 8e-06
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARRET 192
+WG IP +C C V VP + SC CG +R+
Sbjct: 253 LWWGHQIPAWYCEDCQAVNVPRPERYL---------------EDPTSCEACGSPRLKRDE 297
Query: 193 DTMDTFVDSAWYYVRYLGSGGDPN 216
D DT+ SA + + LG +
Sbjct: 298 DVFDTWFSSALWPLSTLGWPEETE 321
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 43.4 bits (101), Expect = 1e-05
Identities = 49/85 (57%), Positives = 59/85 (69%), Gaps = 10/85 (11%)
Query: 133 RYWGTPIPMVHCPSCGPVPVPYEALPITLP---------PSPPLPLASNAEWQHCSCPKC 183
RYWGTPIPMVHC +CG VPVP E LP+ LP P PL ++ E+ +CPKC
Sbjct: 236 RYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKC 295
Query: 184 GHGGARRETDTMDTFVDSAWYYVRY 208
G G A+R+TDTMDTF DS+WYY+RY
Sbjct: 296 G-GPAKRDTDTMDTFFDSSWYYLRY 319
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 42.6 bits (99), Expect = 2e-05
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 7/122 (5%)
Query: 96 QYMSVFAICMPCTNPFKYNHYTVSLAHHVIAVWFL-KCRYWGTPIPMVHCPSCGPVPVPY 154
+ + + W + + R WG P+P+ + + +
Sbjct: 225 VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKE 284
Query: 155 EALPITLPPSPPL------PLASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRY 208
+ + A + + + P +G +ETD MD + DS +
Sbjct: 285 TVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGV 344
Query: 209 LG 210
L
Sbjct: 345 LE 346
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 31.0 bits (70), Expect = 0.12
Identities = 14/84 (16%), Positives = 21/84 (25%), Gaps = 32/84 (38%)
Query: 131 KCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNAEWQHCSCPKCGHGGARR 190
Y+G +P+ C +CG C CG
Sbjct: 505 HLDYFGVNMPVDKCFTCGSTHEMTP------------------TENGFVCSICG----ET 542
Query: 191 ETDTMDTFVDSAWYYVR---YLGS 211
+ M+ R YLG+
Sbjct: 543 DPKKMN-------TIRRTCAYLGN 559
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 25.6 bits (56), Expect = 3.6
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 187 GARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPD 221
G E + + + VR S PN LPD
Sbjct: 1 GKNAERELVSILRGEGFNAVRIPTSNSSPN-PLPD 34
>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
(Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 249
Score = 25.7 bits (56), Expect = 4.4
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 45 LEMEREMVKLLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVF 101
L + K + + + +P L ++ + P+L SN QY++ F
Sbjct: 150 LACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNI---QYITRF 203
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr
C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Length = 148
Score = 25.1 bits (54), Expect = 6.0
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 170 ASNAEWQHCSCPKCGHGGARRETDTMDTFVDSAWYYVRYLGSGGDPNVRLPDQPDGSR 227
++ + H S G G + + S YY + G+G R+ + R
Sbjct: 95 LADGYYIHSSGKDQGRDGIGIDILSEQGDAVSLSYYQQLRGAG-----RVFKSYEPQR 147
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 25.0 bits (53), Expect = 7.7
Identities = 16/132 (12%), Positives = 36/132 (27%)
Query: 54 LLPEVLLNLSKISITTSIAIPILEFVSMLTRLPKLFSNFVGDQYMSVFAICMPCTNPFKY 113
L ++ L K ++T +++ L+ V+ L + G +Y++ N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76
Query: 114 NHYTVSLAHHVIAVWFLKCRYWGTPIPMVHCPSCGPVPVPYEALPITLPPSPPLPLASNA 173
+L V + TP+ + + + L L +
Sbjct: 77 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136
Query: 174 EWQHCSCPKCGH 185
Sbjct: 137 SNTISDISALSG 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.465
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 950,372
Number of extensions: 44837
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 22
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)