RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy838
(152 letters)
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 84.9 bits (210), Expect = 1e-22
Identities = 36/53 (67%), Positives = 41/53 (77%)
Query: 1 MAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLG 53
M KRTKK GI GKYGTRYGASLRK +KKME++QH+KY C FCGK K +G
Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVG 53
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 1s1i_9
Length = 92
Score = 84.5 bits (209), Expect = 1e-22
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 1 MAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLG 53
MAKRTKKVGITGKYG RYG+SLR+ VKK+EI QHA+Y CSFCGK+ K G
Sbjct: 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAG 53
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Y 4a1c_Y 4a1e_Y
Length = 103
Score = 84.6 bits (209), Expect = 2e-22
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 1 MAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKK 48
MAKRT+KVGIT KYGTRYGASLRK+VKK EITQHAKY C FCGK K
Sbjct: 1 MAKRTQKVGITRKYGTRYGASLRKVVKKFEITQHAKYGCPFCGKVAVK 48
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic
sequnece for R-proteins, ribonucleoprotein, ribosoma
protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z*
3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z*
3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z*
3i56_Z* 3cpw_Y* 4adx_Z
Length = 116
Score = 85.0 bits (210), Expect = 2e-22
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1 MAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGK 44
MA ++ K G +G++G RYG R+ V ++E + + C CG+
Sbjct: 25 MASKSGKTGSSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGE 68
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB:
1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z*
1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z*
1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 67.5 bits (165), Expect = 5e-16
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 11 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGK 44
+G++G RYG R+ V ++E + + C CG+
Sbjct: 2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGE 35
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 66.4 bits (162), Expect = 1e-15
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLG 53
TGKYG RYG+SLR+ VKK+EI QHA+Y CSFCGK+ K G
Sbjct: 1 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAG 43
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 65.2 bits (159), Expect = 3e-15
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 11 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGK 44
TG++G RYG +R V+ +EI KY C CG
Sbjct: 2 TGRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGF 35
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel B strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Length = 158
Score = 34.4 bits (79), Expect = 0.005
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ + N V + + + + + Y+ L + + KG K + A
Sbjct: 58 PHHHLWSLKLNEK--DIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAA 112
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural
genomics, PSI, protein structure initiative; 2.20A
{Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 180
Score = 34.1 bits (78), Expect = 0.008
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ + N V + + + + + Y+ L + + KG K + A
Sbjct: 82 PHHHLWSLKLNEK--DIVGWLWIHAEPEHPQQEAFIYDFGLYEPYRGKGYAKQALAA 136
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 30.9 bits (70), Expect = 0.081
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 90 DDRACYLVAKNGSSSTPVAF--SHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
L A + V ++ + +Y Y+L + + +R+G+ ++
Sbjct: 73 SKTFIALAAFDQE--AVVGALAAYVLPKFEQPRSEIYIYDLAVSGEHRRQGIATALINL 129
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI
1; alpha-beta protein, structural genomics, PSI; HET:
COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Length = 180
Score = 30.8 bits (70), Expect = 0.092
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 79 WDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVL-YCYELQ---LEKQV 134
++ + E+ + + + + D E + E++ ++
Sbjct: 45 FNTEQLEKELSNMSSQFFFIYFDH--EIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSF 102
Query: 135 QRKGLGKFMMQA 146
Q+ GLGK ++
Sbjct: 103 QKHGLGKHLLNK 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.10
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 61/166 (36%)
Query: 17 RYGASLRKMVKK--MEITQHAKYTCSFCGKE------------YKKSTDLGAETKKWVWE 62
YG S+ +V + +T H F G++ ++ D +T+K E
Sbjct: 1656 TYGFSILDIVINNPVNLTIH------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 63 LEEKNMKHSYEVCDIGWDPQGKHSE-------MF-DDRACYLVAK-NGSSSTPVAF---S 110
+ E + +++ +G S + ++A + K G F S
Sbjct: 1710 INEHSTSYTFR------SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 111 HFRFDVDFGEPVLY----CY--ELQLEKQV----QRKGLGKFMMQA 146
GE Y + +E V R G M A
Sbjct: 1764 -------LGE---YAALASLADVMSIESLVEVVFYR---GMTMQVA 1796
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 30.6 bits (69), Expect = 0.11
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 76 DIGWDPQGKHSE----MFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLE 131
+GW +E +A +G V V G ++ +L +
Sbjct: 21 AVGWTNYTHQTEMLEQALSHSLVIYLALDGD--AVVGLIRL---VGDGFSSVFVQDLIVL 75
Query: 132 KQVQRKGLGKFMMQA 146
QR+G+G +M+
Sbjct: 76 PSYQRQGIGSSLMKE 90
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex;
HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP:
d.108.1.1 PDB: 1qso_A
Length = 152
Score = 30.4 bits (69), Expect = 0.12
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 88 MFDDRACY-LVAKNGSSSTPVAFSHFRFDVD--FGEPVLYCYELQLEKQVQRKGLGKFMM 144
+ + + VA SS + +F + + +Y +L +++ + KG G ++
Sbjct: 46 LDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLI 105
Query: 145 QAFYTY 150
Q Y
Sbjct: 106 QFVYDE 111
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI,
protein structure initiative; 2.80A {Pseudomonas
aeruginosa PAO1} SCOP: d.108.1.1
Length = 153
Score = 30.5 bits (69), Expect = 0.12
Identities = 5/65 (7%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 88 MFDDRACYLVAKNGSSSTPVAFSHFRFDVDF--GEPVLYCYELQLEKQVQRKGLGKFMMQ 145
+ + +A + F + V ++ + ++ +R+ + ++Q
Sbjct: 42 LRRKESVIYLALADEEDRLLGFCQLYPSFSSLSLKRVWILNDIYVAEEARRQLVADHLLQ 101
Query: 146 AFYTY 150
Sbjct: 102 HAKQM 106
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus
horikoshii OT3, riken struct genomics/proteomics
initiative, RSGI; HET: ACO; 1.75A {Pyrococcus
horikoshii} SCOP: d.108.1.1
Length = 159
Score = 30.1 bits (68), Expect = 0.15
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 87 EMFDDRACYLVAKNGSSSTPVAFSHFR---FDVDFGEPVLYCYELQLEKQVQRKGLGKFM 143
+ VAK G V F F G V +E ++K+ Q KG+G+ +
Sbjct: 49 CWKKASDGFFVAKVGD--KIVGFIVCDKDWFSKYEGRIVGAIHEFVVDKKFQGKGIGRKL 106
Query: 144 MQA 146
+
Sbjct: 107 LIT 109
>3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics,
midwest center for structu genomics, MCSG; HET: PGE;
2.00A {Staphylococcus aureus}
Length = 150
Score = 30.1 bits (68), Expect = 0.18
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDF--GEPVLYCYELQLEKQVQRKGLGKFMMQA 146
D L+ + + S + + + + + ++KG GK ++
Sbjct: 48 HDDYFLLLLIKEN--KIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLAD 104
>3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative
acetyltransferase, acetyltransferase family, structural
genomics; 2.00A {Thermoplasma acidophilum dsm 1728}
Length = 266
Score = 30.5 bits (68), Expect = 0.19
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 87 EMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+D + Y++ +G PVA H + + L++ + + LG +MQ
Sbjct: 55 RWVNDGSVYVLRVSG---RPVATIHMEK---LPDGSVMLGGLRVHPEYRGSRLGMSIMQE 108
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside
ribostamycin; HET: COA RIO; 2.00A {Salmonella
enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A*
2vbq_A*
Length = 165
Score = 29.7 bits (67), Expect = 0.23
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 88 MFDDRACYLVAKNGSSSTPVAFSHFRFDVDFG---EPVLYCYELQLEKQVQRKGLGKFMM 144
+ D +A + A + R D G PV++ + + +++G+ K ++
Sbjct: 58 LQADHLASFIAMADGVAIGFADASIRHDYVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLI 117
Query: 145 QA 146
A
Sbjct: 118 AA 119
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette
protein, mobIle metagenome, structural genomics, PSI-2;
1.45A {Uncultured bacterium}
Length = 176
Score = 29.7 bits (67), Expect = 0.25
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 90 DDRACYLVAKNGSSSTPVAFS--HFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
D + G+ V + F +++G + + + + KGLG +Q
Sbjct: 68 PDLGRIWLIAEGT--ESVGYIVLTLGFSMEYGGLRGFVDDFFVRPNARGKGLGAAALQT 124
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 29.4 bits (66), Expect = 0.34
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ +N +AF F + + ++ L +E Q ++ G+ + A
Sbjct: 62 HTNDKIYIYENEG--QLIAFIWGHFSNE--KSMVNIELLYVEPQFRKLGIATQLKIA 114
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme
A complex, MSHD, TRAN; HET: COA ACO; 1.60A
{Mycobacterium tuberculosis} SCOP: d.108.1.1 PDB:
1ozp_A* 2c27_A*
Length = 318
Score = 29.4 bits (65), Expect = 0.39
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 6/110 (5%)
Query: 42 CGKEYKKSTDLGAETKKWVWELEEKNMKHSYEVC--DIGWDPQGKHSEMFDDRACYLV-- 97
T G + + E + + FD L
Sbjct: 151 IPDGVVIRTYAGTSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWFDPDGLILAFG 210
Query: 98 -AKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ + F + D + Y L ++ QR+GLG+ +
Sbjct: 211 DSPRERPGRLLGFHWTKVHPD-HPGLGEVYVLGVDPAAQRRGLGQMLTSI 259
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 28.6 bits (64), Expect = 0.57
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 91 DRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQAF 147
R +L+ PV + + L + + Q +GLG+ ++ F
Sbjct: 61 RRRAFLLFLGQ---EPVGYLDAKLGYP-EAEDATLSLLLIREDHQGRGLGRQALERF 113
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET:
COA; 1.84A {Sulfolobus solfataricus P2}
Length = 160
Score = 28.4 bits (64), Expect = 0.61
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 91 DRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ +A+ V + D +F L + + + G+G +++
Sbjct: 52 EDHVTFLAEVDG--KVVGEASLHKDGEFS--------LVVHRNYRTLGIGTLLVKT 97
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.61A {Vibrio fischeri}
Length = 166
Score = 28.1 bits (63), Expect = 0.81
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 60 VWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRF----- 114
+ + + ++ + + + D VA+ + F F
Sbjct: 23 LHDEHHQQCPDLFKTASEIEEEKSIARYLDDPECMVYVAEMDD--VIIGFITGHFCELIS 80
Query: 115 DVDFGEPVLYCYELQLEKQVQRKGLGKFMMQAF 147
V + EL +EK+ +R+G+ + +M
Sbjct: 81 TVSKLVMMATIDELYIEKEYRREGVAEQLMMRI 113
>2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown
function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus}
SCOP: d.108.1.1 PDB: 1wk4_A*
Length = 174
Score = 28.2 bits (63), Expect = 0.82
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 87 EMFDDRACYLVAKNGSSSTPVAFSHFR--FDVDFGEPVLYCYELQLEKQVQRKGLGKFMM 144
++ V F+ F F + + + QRKGLG+ +
Sbjct: 53 TPTWPGRLFVAESESG--EVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALF 110
Query: 145 QA 146
Sbjct: 111 HE 112
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 0.87
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 36 KYTCSFCGKEYKKSTDLG 53
YTCSFC +E++ + LG
Sbjct: 6 SYTCSFCKREFRSAQALG 23
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 28.1 bits (63), Expect = 0.89
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDF---GEPVLYCYELQLEKQVQRKGLGKFMMQA 146
VA PVA + + P + + + + +G G+ +++
Sbjct: 48 QPGLTIFVATENG--KPVATATLLIVPNLTRAARPYAFIENVVTLEARRGRGYGRTVVRH 105
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative
acetyltransferase, arthrobacter SP. FB acetyltransferase
(GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Length = 172
Score = 28.2 bits (63), Expect = 0.94
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 87 EMFDDRACYLVAKNGSSSTPVAFS--HFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMM 144
+ ++ P + FR +V + PV EL + + LG ++
Sbjct: 63 HLLAGEDVVVLLAGE---PPTGLAVLSFRPNVWYPGPVAILDELYVRPGRRGHRLGSALL 119
Query: 145 QA 146
A
Sbjct: 120 AA 121
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas
aerugi PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Length = 166
Score = 27.7 bits (62), Expect = 0.99
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 89 FDDRACY--LVAKNGSSSTPVAFSHF--RFDVDFGEPVLYCYELQLEKQVQRKGLGKFMM 144
F + + L+ + P+ ++ F + G +Y +L + + + G G+ ++
Sbjct: 53 FAEGSPTRALMCLSEG--RPIGYAVFFYSYSTWLGRNGIYLEDLYVTPEYRGVGAGRRLL 110
Query: 145 QAFYTY 150
+
Sbjct: 111 RELARE 116
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
decarboxylase, X-RAY diffraction, structural genomics,
NPPSFA; 2.15A {Aquifex aeolicus}
Length = 189
Score = 27.9 bits (62), Expect = 1.1
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 20/78 (25%)
Query: 8 VGITGKYGTRYGASLRKMVKKME------ITQHAKYTCSFCGKEYKKSTDLGAETKKWVW 61
+ ITG G YG L +++++++ I+++AK L E
Sbjct: 6 LCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVV-------------LKEEHSLTFE 52
Query: 62 ELEEKN-MKHSYEVCDIG 78
E+ + +E D
Sbjct: 53 EVLKGLKNVRIHEENDFT 70
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family,
structural genomics, PSI, protein structure initiative;
1.41A {Pseudomonas aeruginosa PAO1}
Length = 182
Score = 27.4 bits (61), Expect = 1.4
Identities = 6/86 (6%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 61 WELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGE 120
+ + + + Y + + + + R + +G + F++F
Sbjct: 41 FPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDG---QVLGFANFYQWQ--HG 95
Query: 121 PVLYCYELQLEKQVQRKGLGKFMMQA 146
+ + + G+ ++++
Sbjct: 96 DFCALGNMMVAPAARGLGVARYLIGV 121
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 27.5 bits (61), Expect = 1.4
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 87 EMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ D A +++A+ + F + D G L+++ + GLG +M+
Sbjct: 42 RILDRAAVFVLART-PDGQVIGFVNALSD---GILAASIPLLEVQAGWRSLGLGSELMRR 97
>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: MSE;
2.00A {Shigella flexneri 2A}
Length = 144
Score = 27.4 bits (61), Expect = 1.4
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 79 WDPQGKHSEMF--DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQR 136
W+ E D + +LVA+ V +D G Y L + + +
Sbjct: 30 WNDPEMDIERKMNHDVSLFLVAEVNG--EVVGTVMGGYDGHRG----SAYYLGVHPEFRG 83
Query: 137 KGLGKFMMQA 146
+G+ ++
Sbjct: 84 RGIANALLNR 93
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.48A {Clostridium difficile}
Length = 157
Score = 27.5 bits (61), Expect = 1.5
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVD--FGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ + Y V VA + ++ L+ + ++K+ +RKG+ ++
Sbjct: 52 ERKGKYHVYTVFD--KVVAQIMYTYEWSDWRNGNFLWIQSVYVDKEYRRKGIFNYLFNY 108
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 27.2 bits (60), Expect = 1.9
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 87 EMFDDRACY-LVAKNGSSSTPVAFSHFRFDVDF---GEPVLYCYELQLEKQVQRKGLGKF 142
M Y V ++ + VA + + F ++ + + + K LGK
Sbjct: 77 HMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKL 136
Query: 143 MMQA 146
++
Sbjct: 137 LLST 140
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.4 bits (57), Expect = 1.9
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 21 SLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLGAETKK 58
++ + K ME + +TC CGK+ + +
Sbjct: 47 TIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA,
protein degradation, structural genomics, NPPSFA; HET:
MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB:
2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A*
2z3p_A*
Length = 256
Score = 27.3 bits (60), Expect = 2.1
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 21 SLRKMVKK----MEITQHAKYTCSFCGKEYKKSTDLGAETKKWVWELEEKNMKHSYEVCD 76
S+++ K+ + + C + ++ T + + L E HS EV
Sbjct: 94 SMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWR 153
Query: 77 IG 78
Sbjct: 154 ED 155
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for
structural genomics of infectious diseases (csgid
national institute of allergy and infectious diseases;
HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A
4e8o_A
Length = 166
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 88 MFDDRACYLVAKNGSSSTPVAFSHFRFDVDF-----GEPVLYCYELQLEKQVQRKGLGKF 142
+ + A L+A + +A ++ PV + + + +R G+
Sbjct: 58 LAEKYALQLLAYSDH--QAIAMLEASIRFEYVNGTETSPVGFLEGIYVLPAHRRSGVATM 115
Query: 143 MMQA 146
+++
Sbjct: 116 LIRQ 119
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic,
structur genomics, PSI-2, protein structure initiative;
HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP:
d.108.1.1 PDB: 3pgp_A*
Length = 160
Score = 26.6 bits (59), Expect = 2.6
Identities = 5/68 (7%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 79 WDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKG 138
+ + + + R + +G + F++F + + + G
Sbjct: 37 FSVAQLAAAIAERRGSTVAVHDG---QVLGFANFYQWQ--HGDFCALGNMMVAPAARGLG 91
Query: 139 LGKFMMQA 146
+ ++++
Sbjct: 92 VARYLIGV 99
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX,
montreal-kingston bacterial structu genomics
initiative, BSGI; HET: FMN; 2.00A {Escherichia coli}
SCOP: c.34.1.1
Length = 197
Score = 26.7 bits (59), Expect = 3.1
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 8 VGITGKYGTRYGASLRKMVKKME-------ITQHAKYTCSF 41
VG+TG G G +L + +++M +++ AK T
Sbjct: 5 VGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIEL 45
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle
structural genomics center for infectious electron
transport, iron; NMR {Mycobacterium tuberculosis}
Length = 81
Score = 25.5 bits (56), Expect = 3.3
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 10 ITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEY 46
+ + G + + + + C CG EY
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMNDYKLFRCIQCGFEY 37
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 26.3 bits (58), Expect = 3.3
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 60 VWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFG 119
V ELE K + + + + F+ +LVAK V + +
Sbjct: 48 VVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKD--KIVGVLDYS-SLYPF 104
Query: 120 EPVLYCYELQL--EKQVQRKGLGKFMMQA 146
+ + ++ +RKG+G+ ++Q
Sbjct: 105 PSGQHIVTFGIAVAEKERRKGIGRALVQI 133
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha
acetylation, GCN5-N-acetyltransferase, ribosomal Pro
acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella
typhimurium} PDB: 2cnm_A* 2cns_A*
Length = 160
Score = 26.1 bits (58), Expect = 3.5
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 24/94 (25%)
Query: 59 WVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDF 118
W++E++ W + + + + AF+ + +D
Sbjct: 14 AAWQIEQRAHAFP-------WSEKTFFGNQGERYLNLKLTADD---RMAAFAITQVVLD- 62
Query: 119 GEPVLYCYELQL-----EKQVQRKGLGKFMMQAF 147
E L + QR+GLG+ +++
Sbjct: 63 --------EATLFNIAVDPDFQRRGLGRMLLEHL 88
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2,
protein structure initiative, midwest center for STR
genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB:
3f0a_A* 3k9u_A* 3ne7_A*
Length = 183
Score = 26.2 bits (58), Expect = 3.8
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ +L A S T + F + + E L L+ + K +GK ++
Sbjct: 84 NLDILFLGAFADS--TLIGFIELKIIANKAE----LLRLYLKPEYTHKKIGKTLLLE 134
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF
zinc finger, homodimer, metal binding protein; NMR
{Escherichia coli} SCOP: g.39.1.11
Length = 67
Score = 24.8 bits (54), Expect = 4.0
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 19 GASLRKMVKKMEITQHAKYTCSFCGKE 45
G K + CSFCGK
Sbjct: 1 GHHHHHHTDKRKDGSGKLLYCSFCGKS 27
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 26.5 bits (57), Expect = 4.1
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 5 TKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLGAETKK----WV 60
T ++ + + + K +KM + C+ C EY + K W
Sbjct: 196 TMELRLYSEPLKDWLKRSGKDWQKMSRNEKRTLVCAQCHVEYYFTHKDNGPAAKPVFPWD 255
Query: 61 WELEEKNMKHSYEVCDIGWDPQGKHSEMFDD 91
++M Y+ G F D
Sbjct: 256 NGFNPEDMYQYYK--GHGAKGPDGKPGPFVD 284
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 26.3 bits (57), Expect = 4.5
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 78 GWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRK 137
G + EM + + A + V F +G + L +E ++
Sbjct: 30 GDSSAEEVEEMMNPERIAVAAVDQD--ELVGFIGAI--PQYGITGWELHPLVVESSRRKN 85
Query: 138 GLGKFMMQAFYTY 150
+G ++
Sbjct: 86 QIGTRLVNYLEKE 98
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 25.1 bits (55), Expect = 4.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 37 YTCSFCGKEYKKSTDL 52
+ C FCGK ++K +
Sbjct: 39 FPCEFCGKRFEKPDSV 54
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 23.9 bits (52), Expect = 5.2
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 29 MEITQHAKYTCSF--CGKEYKKSTDLGA 54
M+ + ++ C CGK Y K++ L A
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRA 28
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 25.0 bits (54), Expect = 5.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 19 GASLRKMVKKMEITQHAKYTCSFCGKE 45
G+S ++M + QH + C CG E
Sbjct: 4 GSSGQQMQAESGFVQHVGFKCDNCGIE 30
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.75A {Listeria innocua}
Length = 163
Score = 25.4 bits (56), Expect = 6.9
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 95 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ V + + F++F ++ + L +V ++GLG +++
Sbjct: 62 FAVLEQAD--KVIGFANF---IELEKGKSELAAFYLLPEVTQRGLGTELLEV 108
>2fl4_A Spermine/spermidine acetyltransferase; structural genomics, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP:
d.108.1.1
Length = 149
Score = 25.5 bits (56), Expect = 7.3
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 86 SEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQ 145
S+ F + + + ++ + D ++ ++++ Q +G GK +
Sbjct: 40 SDQFPEWESAGIYDGN---QLIGYAMYGRWQD---GRVWLDRFLIDQRFQGQGYGKAACR 93
Query: 146 AFYTYI 151
+
Sbjct: 94 LLMLKL 99
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 7.4
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 8/30 (26%)
Query: 33 QHAKYTCSFCG---KEYKKSTDLGAETKKW 59
C+ CG + K D +E W
Sbjct: 39 SEGDVVCALCGLVLSD--KLVDTRSE---W 63
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold,
structural genomics, PSI, P structure initiative; 2.00A
{Bacillus halodurans} SCOP: d.108.1.1
Length = 153
Score = 25.1 bits (55), Expect = 8.0
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 90 DDRACYLVAKNGSSSTPVAFSHFRFDVDF---GEPVLYCYELQLEKQVQRKGLGKFMMQA 146
D +VA NG V F G ++ + +G+G ++
Sbjct: 52 DKNNELIVACNGE--EIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQGIGSQLVCW 109
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 24.9 bits (53), Expect = 9.7
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 32 TQHAKYTCSFCGKEYKKSTDL 52
C C KE+ +
Sbjct: 96 YTEHTKVCPVCKKEFTSTDSA 116
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics;
1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Length = 133
Score = 24.8 bits (54), Expect = 9.9
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 116 VDFGEPVLYCYELQLEKQVQRKGLGKFMMQA 146
+ G V ++ + K Q + G +M+
Sbjct: 57 IGDGGTVFQIVDIAVLKSYQGQAYGSLIMEH 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,353,273
Number of extensions: 126057
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 95
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)