RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy838
(152 letters)
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 71.2 bits (175), Expect = 5e-18
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 11 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKE 45
+G++G RYG R+ V ++E + + C CG++
Sbjct: 2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGED 36
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 70.5 bits (173), Expect = 1e-17
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 11 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLG 53
TG++G RYG +R V +EI K+ C CG + K G
Sbjct: 2 TGRFGPRYGLKIRVRVADVEIKHKKKHKCPVCGFKKLKRAGTG 44
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 26.6 bits (58), Expect = 0.75
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 20 ASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLGAETKKWVWELEEKNMKHSYEVCDIGW 79
A + ++ ++ K TC FC K T++ + +L K +
Sbjct: 3 AFVNSKIQPGKVVVFIKPTCPFCRK-----------TQELLSQLPFKEGLLEFVDITATS 51
Query: 80 DPQGKHSEMF 89
D +
Sbjct: 52 DTNEIQDYLQ 61
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.9 bits (52), Expect = 2.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 36 KYTCSFCGKEYKKSTDLG 53
YTCSFC +E++ + LG
Sbjct: 5 SYTCSFCKREFRSAQALG 22
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 57
Score = 24.3 bits (53), Expect = 2.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 23 RKMVKKMEITQHAKYTCSFCGKEYK 47
+K ++ M + C +C Y
Sbjct: 17 KKELEDMRKEGKGEVVCKWCNTRYV 41
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein
3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 24.3 bits (52), Expect = 2.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 23 RKMVKKMEITQHAKYTCSFCGKE 45
++M + QH + C CG E
Sbjct: 1 QQMQAESGFVQHVGFKCDNCGIE 23
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 25.4 bits (55), Expect = 4.0
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 5 TKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKEYKKSTDLGAETKK----WV 60
T ++ + + + K +KM + C+ C EY + K W
Sbjct: 159 TMELRLYSEPLKDWLKRSGKDWQKMSRNEKRTLVCAQCHVEYYFTHKDNGPAAKPVFPWD 218
Query: 61 WELEEKNMKHSYEVCDIGWDPQGKHSEMFDD 91
++M Y+ G F D
Sbjct: 219 NGFNPEDMYQYYK--GHGAKGPDGKPGPFVD 247
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain
{Escherichia coli [TaxId: 562]}
Length = 38
Score = 22.7 bits (49), Expect = 5.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 39 CSFCGKE 45
CSFCGK
Sbjct: 4 CSFCGKS 10
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.4 bits (53), Expect = 5.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 133 QVQRKGLGKFMMQAFY 148
QR+G GKF++ Y
Sbjct: 146 PYQRRGYGKFLIAFSY 161
>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 315
Score = 24.4 bits (53), Expect = 6.5
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 135 QRKGLGKFMMQAFYTY 150
Q KG G + +A
Sbjct: 222 QNKGHGSCLYEAIIQS 237
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 22.2 bits (48), Expect = 7.4
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 37 YTCSFCGKEYKKSTDL 52
+ C C + + + L
Sbjct: 3 FVCEVCTRAFARQEHL 18
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 21.9 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 37 YTCSFCGKEYKKSTDLGAETK 57
Y C FC KE+ + ++ A K
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVK 22
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 22.1 bits (47), Expect = 9.0
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 34 HAKYTCSFCGKEYKKSTDLGAETKKW-VW 61
C+ C +E K L A K+W V
Sbjct: 6 RGPSHCAGCKEEIKHGQSLLALDKQWHVS 34
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId:
55529]}
Length = 70
Score = 22.8 bits (49), Expect = 9.2
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 29 MEITQHAKYTCSFCGKEY 46
MEI + KY C CG Y
Sbjct: 1 MEIDE-GKYECEACGYIY 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,801
Number of extensions: 25745
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 37
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)