RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8382
(864 letters)
>gnl|CDD|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane
component. This family includes a common region in the
transmembrane proteins mammalian cytochrome B-245 heavy
chain (gp91-phox), ferric reductase transmembrane
component in yeast and respiratory burst oxidase from
mouse-ear cress. This may be a family of
flavocytochromes capable of moving electrons across the
plasma membrane. The Frp1 protein from S. pombe is a
ferric reductase component and is required for cell
surface ferric reductase activity, mutants in frp1 are
deficient in ferric iron uptake. Cytochrome B-245 heavy
chain is a FAD-dependent dehydrogenase it is also has
electron transferase activity which reduces molecular
oxygen to superoxide anion, a precursor in the
production of microbicidal oxidants. Mutations in the
sequence of cytochrome B-245 heavy chain (gp91-phox)
lead to the X-linked chronic granulomatous disease. The
bacteriocidal ability of phagocytic cells is reduced and
is characterized by the absence of a functional plasma
membrane associated NADPH oxidase. The chronic
granulomatous disease gene codes for the beta chain of
cytochrome B-245 and cytochrome B-245 is missing from
patients with the disease.
Length = 122
Score = 61.5 bits (150), Expect = 2e-11
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 24/123 (19%)
Query: 343 NCMFVLVLMLRHCITFLRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSLN 402
+L+L LR+ T L LD+ + FH+ G F ++LH I++L+ +
Sbjct: 8 LLPLLLLLALRNNPLEWLTG-----LSLDRLLLFHRWLGRLAFLLALLHVILYLVLW--- 59
Query: 403 VLGDGTINKKGLSLTEWLFTSRPGLFGLINGWANPTGVCLIIILTIMFICSQTFVRKSGS 462
L + GV +++L ++ I S +R+
Sbjct: 60 ----------------LRLGGILLLLEKLKRPYILLGVIALVLLLLLAITSLPPLRRRLG 103
Query: 463 FEL 465
+EL
Sbjct: 104 YEL 106
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 54.9 bits (133), Expect = 1e-09
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGA 237
+++ FR++D DGDG I EL+ +++ G SEE+ID + + D + G
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEID----EMIREVDKDGDGK 52
Query: 238 ITYE 241
I +E
Sbjct: 53 IDFE 56
Score = 44.8 bits (107), Expect = 4e-06
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 149 CRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHV 202
R+ F+ I+ +E A+ +++I + R D DGDG I +E +
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 203 MR 204
M
Sbjct: 62 MA 63
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 54.6 bits (132), Expect = 1e-08
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 158 ITKNEFIDAMHQFAGQ-SPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ EF+ M + +++++ F+++D D DG I EL+ V++ G + S+
Sbjct: 72 VDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK----SLGERLSD 127
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKN 245
E+++ L ++ D + G I YE K
Sbjct: 128 EEVE----KLLKEYDEDGDGEIDYEEFKK 152
Score = 32.3 bits (74), Expect = 0.48
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
++K F+++D D DGLI EL ++R+ G SE +I+ LFE+ D+
Sbjct: 20 QELKEAFQLFDRDSDGLIDRNELGKILRSL----GFNPSEAEINK----LFEEIDA-GNE 70
Query: 237 AITYE 241
+ +
Sbjct: 71 TVDFP 75
Score = 29.2 bits (66), Expect = 6.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKN 245
Q +EEQI L A F+ D ++ G I L
Sbjct: 12 TQLTEEQIQELKEA-FQLFDRDSDGLIDRNELGK 44
>gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain. This is a BRCT domain that
appears in duplicate in most member sequences. BRCT
domains are peptide- and phosphopeptide-binding modules.
BRCT domains are present in a number of proteins
involved in DNA checkpoint controls and DNA repair.
Length = 63
Score = 49.1 bits (118), Expect = 1e-07
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 522 TKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGSKYNAALKWGFPSVNKKW 577
KL + LGA Y ++ K+ THL+C G KY A KWG P V+ W
Sbjct: 17 QKLIEALGAEYSKDLTKK---------VTHLICKRGEGEKYEKAKKWGIPVVSHLW 63
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 49.8 bits (119), Expect = 4e-07
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAM-HQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I EF+ M + +++IK F+V+D DG+G I EL+HVM G + ++
Sbjct: 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTD 119
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++D + +AD + G I YE
Sbjct: 120 EEVDE----MIREADVDGDGQINYE 140
Score = 33.2 bits (76), Expect = 0.23
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 171 AGQSPDDKI---KFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALF 227
A Q +++I K F ++D DGDG I KEL VMR+ G +E ++ +
Sbjct: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL----GQNPTEAELQD----MI 53
Query: 228 EDADSENRGAITY 240
+ D++ G I +
Sbjct: 54 NEVDADGNGTIDF 66
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 39.3 bits (92), Expect = 3e-04
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 184 RVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
++ D DGDG I +EL+ +++A G++ ++E+++ L A F + D + G I++E
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKAL----GLKLTDEEVEELIEADFNEIDKDGDGRISFE 54
Score = 34.3 bits (79), Expect = 0.018
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK----IKFLFRVYDLDGDGLIQHKELQHVM 203
I E + + D++ I+ F D DGDG I +E M
Sbjct: 11 IDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 40.1 bits (94), Expect = 0.001
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 161 NEFIDAMHQFAG-QSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
EF+D M + G + P ++I FR++D D G I K L+ V + E G ++E++
Sbjct: 73 EEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAK----ELGETITDEEL 128
Query: 220 DHLTMALFEDADSENRGAITYESLKNQLEK 249
+ ++AD G I+ E ++K
Sbjct: 129 QE----MIDEADRNGDGEISEEEFYRIMKK 154
Score = 35.4 bits (82), Expect = 0.050
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
+I+ F ++D DG G I KEL+ MR+ G + +E+I + D D + G
Sbjct: 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL----GFEPKKEEIKQ----MIADVDKDGSG 68
Query: 237 AITYE 241
I +E
Sbjct: 69 KIDFE 73
Score = 33.9 bits (78), Expect = 0.14
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
I E AM + ++IK + D DG G I +E +M + E + E
Sbjct: 34 IDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE---RDPRE 90
Query: 218 QIDHLTMALFEDADSENRGAITYESLK 244
+I LF+D + G I+ ++LK
Sbjct: 91 EILKA-FRLFDDDKT---GKISLKNLK 113
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRA 205
++K F+ +D DGDG I +E + +++
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKK 28
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRA 205
++K FR++D DGDG I +E + +++A
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 35.7 bits (84), Expect = 0.002
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 182 LFRVYDLDGDGLIQHKELQHVM 203
LFR +D +GDG I +EL+ ++
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain. The BRCT domain
is found predominantly in proteins involved in cell
cycle checkpoint functions responsive to DNA damage. The
BRCT domain of XRCC1 forms a homodimer in the crystal
structure. This suggests that pairs of BRCT domains
associate as homo- or heterodimers. BRCT domains are
often found as tandem-repeat pairs. Structures of the
BRCA1 BRCT domains revealed a basis for a widely
utilised head-to-tail BRCT-BRCT oligomerisation mode.
This conserved tandem BRCT architecture facilitates
formation of the canonical BRCT phospho-peptide
interaction cleft at a groove between the BRCT domains.
Disease associated missense and nonsense mutations in
the BRCA1 BRCT domains disrupt peptide binding by
directly occluding this peptide binding groove, or by
disrupting key conserved BRCT core folding determinants.
Length = 77
Score = 36.6 bits (85), Expect = 0.004
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 500 FHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSG 559
F ++ + E +L + LG + K+ TH++ +G
Sbjct: 6 FKGKTFVITGLDSLEREEL---EELIEKLGGKVTDSLSKKT---------THVIVGENAG 53
Query: 560 -SKYNAALKWGFPSVNKKWLLEC 581
K A+ G P V ++WLL+C
Sbjct: 54 TLKLLKAIALGIPIVTEEWLLDC 76
Score = 27.7 bits (62), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 483 QPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
THV++G T L A ++ +VT EWL
Sbjct: 38 SLSKKTTHVIVGENAGTLKLLKA-IALGIPIVTEEWLLD 75
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 35.6 bits (83), Expect = 0.005
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 157 LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLI 194
LIT+ E A+ ++++ LFR +D DGDG I
Sbjct: 4 LITREELKRALALLGISLSEEEVDILFREFDTDGDGKI 41
Score = 33.3 bits (77), Expect = 0.031
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 190 GDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEK 249
GLI +EL+ + G+ SEE++D LF + D++ G I++E L++
Sbjct: 1 EKGLITREELKRALALL----GISLSEEEVDI----LFREFDTDGDGKISFEEFCVLLQR 52
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 34.9 bits (81), Expect = 0.006
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRA 205
+++ F+++D DGDG I +EL+ +R+
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain.
Length = 78
Score = 35.8 bits (83), Expect = 0.007
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 500 FHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSG 559
F ++ + LK +L + LG + TH++ + G
Sbjct: 4 FKGKTFYITGSFDKEERDELK--ELIEALGGKVTSSLSSKTT--------THVIVGSPEG 53
Query: 560 SK--YNAALKWGFPSVNKKWLLEC 581
K A+ G P V ++WLL+C
Sbjct: 54 GKLELLKAIALGIPIVKEEWLLDC 77
Score = 29.7 bits (67), Expect = 1.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 484 PDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
+ THV++G+ +L ++ +V EWL
Sbjct: 39 SSKTTTHVIVGSPEGGKLELLKAIALGIPIVKEEWLLD 76
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 37.6 bits (88), Expect = 0.014
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 47/172 (27%)
Query: 288 YQLTLPYIKNNYV------YLGFMFFYLLVNIVLFTSRMYVFRKSNYYVIFARACGQCLN 341
Y LTLP + V L ++++ ++ +F + L
Sbjct: 67 YLLTLPVSRKEIVLSKYLFSLILGLIGIIISFLIAFIVSLIFGNITISELL-------LI 119
Query: 342 FNCMFVLVLMLRHCITFLRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSL 401
++ L+ ++ LPL ++ FGY I+ ++ F +
Sbjct: 120 LLIGLIIALIF-----------GAILLPL-----------YYKFGYEKGRIILIIIIFLI 157
Query: 402 NVLGDGTINKKGLSLTEWLFTSRPGLFGLINGWANPTGVCLIIILTIMFICS 453
+ L L L + L +I L++I+ I++I S
Sbjct: 158 IFIIFAIFKILNLIL--SLINNSSLLLIII----------LLVIIIILYIIS 197
>gnl|CDD|218502 pfam05213, Corona_NS2A, Coronavirus NS2A protein. This family
contains a number of corona virus non-structural
proteins of unknown function. The family also includes a
polymerase protein fragment from Berne virus and does
not seem to be related to the pfam04753 Coronavirus NS2
family. This family is part of the 2H phosphoesterase
superfamily.
Length = 248
Score = 36.8 bits (85), Expect = 0.029
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 147 EICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQ-HKELQHVMR- 204
+I +D+KK+ E ID M G L R Y LD +GL + H ++ V+R
Sbjct: 52 DIKAEDYKKVEFAIQEIIDDMVLPEGDITFTNPHMLGRCYVLDVEGLEELHDDVVSVLRR 111
Query: 205 -ACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
C + S I H T+A D +G
Sbjct: 112 HGCACDQ----SRHWIPHCTIAQLTDESRFTKG 140
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1),
carboxy-terminal domain. The BRCT domain is found within
many DNA damage repair and cell cycle checkpoint
proteins. The unique diversity of this domain
superfamily allows BRCT modules to interact forming
homo/hetero BRCT multimers, BRCT-non-BRCT interactions,
and interactions within DNA strand breaks.
Length = 72
Score = 33.8 bits (78), Expect = 0.032
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 550 THLVCPTCSGSK-YNAALKWGFPSVNKKWLLEC 581
TH++ + +G K A+K G P V +WLL+C
Sbjct: 38 THVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDC 70
Score = 29.6 bits (67), Expect = 0.99
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 483 QPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
THV++G+ KL + +VT EWL
Sbjct: 32 SVSKKTTHVIVGS-DAGPKKLLKAIKLGIPIVTPEWLLD 69
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 36.1 bits (84), Expect = 0.047
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 24/155 (15%)
Query: 300 VYLGFMFFYLLVNIVLF-TSRMYVFRKSNYYVIFARACGQCLNFNCMFVLVLMLRHCITF 358
++ G + L N+ LF + R + YYV++ + L+ L
Sbjct: 7 LFYGILLALALYNLFLFFSLRDRSYL---YYVLY-----------ILSFLLYQL-----S 47
Query: 359 LRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSLNVLGDGTINKKGLSLTE 418
L GF P +K+ F+ L I L F+ + L + L
Sbjct: 48 LNGLGFQYLWPNAPPWLNNKLLYLFLA----LLVIFFALLFARSFLELKKYLPRLDRLLL 103
Query: 419 WLFTSRPGLFGLINGWANPTGVCLIIILTIMFICS 453
L L L + + L +L ++FI
Sbjct: 104 GLALLLLLLLLLAPLFPYTLSLRLAQLLALLFILF 138
>gnl|CDD|233376 TIGR01363, strep_his_triad, streptococcal histidine triad protein.
This model represents the N-terminal half of a family of
Streptococcal proteins that contain a signal peptide and
then up to five repeats of a region that includes a
His-X-X-His-X-His (histidine triad) motif. Three repeats
are found in the seed alignment. Members of this family
from Streptococcus pneumoniae are suggested to cleave
human C3, and the member PhpA has been shown in vaccine
studies to be a protective antigen in mice [Cellular
processes, Pathogenesis].
Length = 348
Score = 35.7 bits (82), Expect = 0.086
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 755 WVNENEL----LAQARTPNSGQRTTNNSERTPSQN--NPSSQRIANNPSNERTPSQTNIS 808
++ +NEL LA A SG++ Q S + NP P + S
Sbjct: 214 YIPKNELSASELAAAEAYWSGKQGRGARPSDYRQGSRKASIPDVTPNPGQPAPPRPNDAS 273
Query: 809 SQAKSSQASQPSDLVKTIDELNQQLSR 835
Q Q KTI L QL R
Sbjct: 274 QNKTQRQEFQG----KTIKSLLDQLYR 296
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 34.1 bits (78), Expect = 0.37
Identities = 57/273 (20%), Positives = 88/273 (32%), Gaps = 42/273 (15%)
Query: 616 NVGSHNGVGSQTNGVQSRLNGARSDAKPNEP----DRLDTKENHTS------------SR 659
N G +NG S G L ++ P L+T E+ S SR
Sbjct: 206 NSGQNNGTSSVRTGTSHPLLMINKESLPMSLKLSKSCLETSESSPSLPVRSLTPNLLKSR 265
Query: 660 KNPEFESASQGSQLSGKSASKKRKLCLLNNGDGEGLCSPVKRTALDSKHSPVKQSQNSSF 719
K PE ++S S ++ +S + + CS + L+ SP QS S
Sbjct: 266 KRPEASTSSTHSCMTNSLSSCESE-----------CCSSNLK-LLEQASSP-SQSPRWSV 312
Query: 720 SQGKPTREERKQWEKLMD------NLSKNCQKLSANNKVEAWVNENELLAQARTPNSGQR 773
+G E K EK CQ+L + K A + + S
Sbjct: 313 DEGNIISEGEKS-EKGSVKRSFELVEKSPCQELLQSKKTNAEYKRGCSITETNGNQSTGL 371
Query: 774 TTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQL 833
T S++ + +A N P + + AK+ D K N
Sbjct: 372 TMEIQSLNLSKHKSRPKFLAGN-EKRTGPKKKSNPVVAKNLMCELDDDGEKDGKYSNSST 430
Query: 834 S-----RAKSRTSRDSDETNSPPKRNSVHARKY 861
S + S +SD + +N+V R Y
Sbjct: 431 SCGDDREIVLKLSLNSDSSFPEMSKNAVAFRSY 463
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 33.8 bits (77), Expect = 0.50
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 718 SFSQGKPTREERKQWEKLMDNLSKNCQKLSANNKVEAWVNE-NELLAQARTPNSGQRTTN 776
SFS K + + K + +++ L N Q N + ++N + +S + +
Sbjct: 629 SFSNEKKS-NKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSKTKNDH 687
Query: 777 NSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDLVKTI 826
N +T PSS + + P + S K Q + +L++ I
Sbjct: 688 NKSKTSKNKEPSSTSFLQDVKKKSDPHNVDFKSFIKQDQENYYVNLLRNI 737
Score = 31.9 bits (72), Expect = 2.1
Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 24/245 (9%)
Query: 635 NGARSDAKPNEPDRLDTKENHTSS----RKNPEFESASQGSQL-SGKSASKKRKLCLLNN 689
N R+ N+ + T HT+ R++P S + + K +K++ + +
Sbjct: 177 NSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKD 236
Query: 690 GDGEGLCSPVKRTALDSKHSPVKQSQNSSFSQGKPTREERKQWEKLMDN------LSKNC 743
DG+ K+T +S+ S V+ S T+E +K + ++ L +
Sbjct: 237 RDGD------KQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKS 290
Query: 744 QKLSANNKV-EAWVNENE--LLAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNER 800
Q L ++ V + + N+G +NN + + S + S++ NPS+
Sbjct: 291 QCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPY 350
Query: 801 TPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKSRTSRDSDETNSPPK-RNSVHAR 859
T + +++ ++ + KT + N L + R S S K R +
Sbjct: 351 KKQTT--TKHTNNTKNNKYNK-TKTTQKFNHPLRHHATINKRSSMLPMSEQKGRGASEKS 407
Query: 860 KYVQT 864
+Y++
Sbjct: 408 EYIKE 412
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 33.6 bits (77), Expect = 0.52
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 28/209 (13%)
Query: 650 DTKENHTSSRKNPEFESASQGSQLSGKSASKKRKLCLLNNGDGEGLCSPV-KRTALDSKH 708
N+TS++ N + + ++ S S S + N + + K D+
Sbjct: 62 KADNNNTSNQDNNDKKFSTIDSS---TSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYS 118
Query: 709 SPVKQSQNSSFS-------QGKPTREERKQWEKLMDNLSKNCQKLSANNKVEAWVNENEL 761
+ + Q + + + K D+ KN ++ + +A
Sbjct: 119 LTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQ---- 174
Query: 762 LAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSD 821
+A + N+ + +T+N + + +Q +N+ + SS+ S + D
Sbjct: 175 --KAPSSNNTKPSTSNKQPNSPKPTQPNQ--SNSQPASDDTANQKSSSKDNQSMSDSALD 230
Query: 822 LV---------KTIDELNQQLSRAKSRTS 841
+ KT + Q + K+ TS
Sbjct: 231 SILDQYSEDAKKTQKDYASQSKKDKTETS 259
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 33.4 bits (76), Expect = 0.56
Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 29/251 (11%)
Query: 589 SEQQYLTGSDEASQNVGSQSNGFGLQQNVGSHNGVGSQTNGVQSRLNGARSDAKPNEPDR 648
E +Y + + Q + G+ + H QT V + + +
Sbjct: 251 PELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGS 310
Query: 649 LDTKENHTS----SRKNPEFESASQGSQLSGKSASKKRKLCLLNNGDGEGLCSPV----- 699
+T N +S S + +SA ++ S+ K ++ +G S V
Sbjct: 311 KETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKS-----HSSANGSVPSSSVSDNES 365
Query: 700 --KRTALDSKHSPVKQSQNSSFSQGKPTREERKQ--------WEKLMDNLSKNCQKLSAN 749
KR + S + + S S + E+L ++ K +L
Sbjct: 366 KQKRASKSSSGARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQA 425
Query: 750 NKVEAWVNENELLAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISS 809
+ NE+EL Q S +R+ + + N Q N+ + + + ++ S
Sbjct: 426 RQ-----NESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQS 480
Query: 810 QAKSSQASQPS 820
K ++ S
Sbjct: 481 MEKRLKSEADS 491
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 33.2 bits (75), Expect = 0.62
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 16/93 (17%)
Query: 765 ARTPNSGQRTTNNSER-TPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDLV 823
+ + E + N P + ++ T Q S S Q PS
Sbjct: 546 TTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSS- 604
Query: 824 KTIDELNQQLSRAKSRTSRDSDETNSPPKRNSV 856
T R + + +P ++
Sbjct: 605 --------------HSTPRSNSTSTTPLLTSAH 623
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 33.3 bits (77), Expect = 0.65
Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 40/191 (20%)
Query: 298 NYVYLGFMF-FYLLVNIVLFTSRMYVFRKSNYYVIFARACGQCLNFNCMFVLVLMLRHCI 356
++ + F L+V + +F S +Y FR ++F +F ++
Sbjct: 344 SFSSVVFNVSLLLVVILCVFLSYLYSFRLCL--ILFGVKSSLSSGVRFLFFNSGLMVFLW 401
Query: 357 TFLRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSLNVL-GDGTINKKGLS 415
F+ + VFL LD+ +Y G F S++ ++ LL + VL D + S
Sbjct: 402 LFI---NYYVFLLLDEVVYL----GVF---ISLVLLLVQLLGLLVGVLFYDSNLFSNWSS 451
Query: 416 LTEWLFTSRPGLFGLINGWANPTGVCLI-----IILTIMFICSQTFVR-KSGSFELLF-L 468
LFG N L+ + +I+ + S F R + ELL +
Sbjct: 452 ----------SLFGCDN---------LVELFYELFYSILDLVSLFFFRWEIYLIELLCGV 492
Query: 469 GGFNVTLQGFW 479
G + L ++
Sbjct: 493 GSSSSLLYSWF 503
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 32.9 bits (75), Expect = 0.79
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 162 EFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKEL 199
EF D + F +K + LF+ DL+GDG++ EL
Sbjct: 200 EFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
Length = 552
Score = 32.3 bits (73), Expect = 1.1
Identities = 16/64 (25%), Positives = 24/64 (37%)
Query: 740 SKNCQKLSANNKVEAWVNENELLAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNE 799
S N QK ANN N NE ++ + QR N+ S S + + +E
Sbjct: 10 SSNFQKQQANNTPSNTSNNNEAVSSELISSENQRKKTNARIYSSIEEHSDKTLDECKEDE 69
Query: 800 RTPS 803
+
Sbjct: 70 AVNT 73
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 32.2 bits (73), Expect = 1.3
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 740 SKNCQKLSANNKVEAWVNENELLAQARTPNSGQRTTNNSERTPS-QNNPSSQRIANNPSN 798
+ N + LSA + N L N ++ + Q NPS + +++ PS
Sbjct: 126 NANVKTLSAPVGEHSRSNNPPNL----DQNLDTEPESSISQWGELQLNPSGKTLSSQPS- 180
Query: 799 ERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKSRTSRDSDETNSPP 851
R P+ N S++ +S+ P+ + + + L R S + + N P
Sbjct: 181 -RKPTSENPKSESDNSK--LPTSVNSPLPD-KSLLKRTLSNFWAERNSYNWKP 229
>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases
[Amino acid transport and metabolism].
Length = 409
Score = 32.2 bits (74), Expect = 1.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 200 QHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLK 244
+ ++A +EE G++ EE++D L + E AD + +T L+
Sbjct: 328 RKAVKAKLEELGIELDEEELDKLFSRVKELADKGKKKEVTDADLE 372
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 32.2 bits (73), Expect = 1.4
Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 49/209 (23%)
Query: 642 KPNEPDRLDTKENHTSSRKNPEFESASQGSQLSGKSASKKRKLCLLNNGDGEGLCSPVKR 701
K P + K++ ++ +K +++ S+ S +K K D E K+
Sbjct: 716 KKGVPPKPAEKDSLSAPKK----QTSKTASEKSSSKGKRKHK------NDEEADKIESKK 765
Query: 702 TALDSKHSPVKQSQNSSFSQGKPTREERKQWEKLMDNLSKNCQKLSANNKVEAWVNENEL 761
L+ K S S +SS +E RK + +K E E+
Sbjct: 766 QRLEEKSSSCSPSSSSSHHHSSSNKESRKS------SRNK----------------EEEM 803
Query: 762 LAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSD 821
L +PS SS +PS +R Q + SS + AS
Sbjct: 804 L-----------------PSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKS 846
Query: 822 LVKTIDELNQQLSRAKSRTSRDSDETNSP 850
K+ + + K ++ + +S
Sbjct: 847 SSKSSSTSKHRKTEGKGSSTSKEHKGSSG 875
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 31.9 bits (73), Expect = 1.9
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 391 HTIMHLLNFSL-NVLGDGTINKKGLSLTEWL 420
HT HLLN +L VLGD K L E L
Sbjct: 598 HTATHLLNSALKEVLGDHVDQKGSLVAFEKL 628
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 31.3 bits (71), Expect = 2.1
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 695 LCSPVKRTALDSKHSPVKQSQNSSFSQGKPTREERKQWEKLMDNLSKNCQKLSANNKVEA 754
L P +TA + + + S++S Q KP + K SA KV+A
Sbjct: 4 LSVPCAKTAAAAANVGSRLSRSSFRLQPKPNISFPSKGPN---------PKRSAVPKVKA 54
Query: 755 WVNENELLAQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSS 814
+NE +A + NS + SE PS+ PSN + N+ + S
Sbjct: 55 QLNE---VAVDGSSNSAKSDDPKSEVAPSEPK------DEPPSNSSSK--PNLPDEESIS 103
Query: 815 Q-ASQPSDLVKTID 827
+ +Q S LVK +D
Sbjct: 104 EFMTQVSSLVKLVD 117
>gnl|CDD|238311 cd00556, Thioesterase_II, Thioesterase II (TEII) is thought to
regenerate misprimed nonribosomal peptide synthetases
(NRPSs) as well as modular polyketide synthases (PKSs)
by hydrolyzing acetyl groups bound to the peptidyl
carrier protein (PCP) and acyl carrier protein (ACP)
domains, respectively. TEII has two tandem asymmetric
hot dog folds that are structurally similar to one found
in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase
(4HBT) and beta-hydroxydecanoyl-ACP dehydratase and
thus, the TEII monomer is equivalent to the homodimeric
form of the latter three enzymes. Human TEII is
expressed in T cells and has been shown to bind the
product of the HIV-1 Nef gene.
Length = 99
Score = 29.2 bits (66), Expect = 2.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 357 TFLRTRGFSVFLPLDQHIYFHK 378
T R G S F LD HIYFH+
Sbjct: 33 TVPRPHGASGFASLDHHIYFHR 54
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 30.8 bits (70), Expect = 2.7
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 299 YVYLGFMFFYLLVNIVLFT-----SRMYVFRKSNYYVIFARACGQCLNFNCMFVLVLM-- 351
++LG + F LLV ++ R+ + S+ ++ R L + +L+
Sbjct: 17 LLFLGPLIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRG----LGLIFYLLGLLLVY 72
Query: 352 LRHCITFLRTRGFS--VFLPLDQHIYFHKMTGFFIFG--YSVLHTIMHLLNFSL 401
+ V L + + + Y L + L+
Sbjct: 73 GEGLLALFGLVLLVIPVLWLLVLPVLAYHRVSSTLLPLFYVGLFLSLLLITNPF 126
>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor
[Transcription].
Length = 498
Score = 31.0 bits (70), Expect = 2.7
Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 41/229 (17%)
Query: 644 NEPDRLDTKENHTSSRKNPEFESASQGSQL-----SGKSASKKRKLCLLNNGDG----EG 694
E ++ N ++S+ +E QG QL S S K LL G +
Sbjct: 227 GENANTESIGNSSASKLTKSWEERPQGRQLLSDAGSLSPRSNNPKSPLLEGLMGSTSLQP 286
Query: 695 LCSPVKRTALDSKHSPV------------KQSQNSSFSQ----GKPTREER------KQW 732
+ +P D K S + + S + KP +R
Sbjct: 287 VSTPKLVLPSDKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPN 346
Query: 733 EKLMDNLSKNCQKLSANNKVEAWVNENELLAQARTPNSGQRT-----TNNSERTPSQNNP 787
K + NC N + N AQ + PN + T R S P
Sbjct: 347 SKRSNATCMNCSSTPTNKILSPPTTSNSPGAQVKLPNQTRSTGATKKKITRRRMNSGKIP 406
Query: 788 SSQRIANNPSNERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRA 836
+ ++ N +S+++ PS ++ ++
Sbjct: 407 ALS---SSMKNPVPKEF--SPLIPQSTESETPSQSKSSLTSKLEEFESL 450
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 30.9 bits (70), Expect = 2.7
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 780 RTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKSR 839
+TP Q+ S + PS ER+P + + S ++ L + + R
Sbjct: 56 QTPRQSRRSKRAAHAYPSPERSP------ALSSERLLSPSPSVLDLSPVLASPQTGKRRR 109
Query: 840 TSRDSDETNS---PPKR 853
+S SD+ + P KR
Sbjct: 110 SSSPSDDEDEAERPSKR 126
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 30.9 bits (70), Expect = 2.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 182 LFRVYDLDGDGLIQHKE 198
+FR+YDLDGDG I +E
Sbjct: 339 IFRLYDLDGDGFITREE 355
>gnl|CDD|119000 pfam10480, ICAP-1_inte_bdg, Beta-1 integrin binding protein.
ICAP-1 is a serine/threonine-rich protein that binds to
the cytoplasmic domains of beta-1 integrins in a highly
specific manner, binding to a NPXY sequence motif on the
beta-1 integrin. The cytoplasmic domains of integrins
are essential for cell adhesion, and the fact that
phosphorylation of ICAP-1 by interaction with the
cell-matrix implies an important role of ICAP-1 during
integrin-dependent cell adhesion. Overexpression of
ICAP-1 strongly reduces the integrin-mediated cell
spreading on extracellular matrix and inhibits both
Cdc42 and Rac1. In addition, ICAP-1 induces release of
Cdc42 from cellular membranes and prevents the
dissociation of GDP from this GTPase. An additional
function of ICAP-1 is to promote differentiation of
osteoprogenitors by supporting their condensation
through modulating the integrin high affinity state,.
Length = 200
Score = 30.4 bits (68), Expect = 3.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 811 AKSSQASQPSDLVKTIDELNQQLSRAKSRTSRDSDETNSPPKRNSV 856
+ SSQ+S+ S K++D LSR+ + S D+D T S + N+
Sbjct: 11 SSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNAN 56
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 30.9 bits (71), Expect = 3.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 287 PYQLTLPYIKNNYVYLGFMFFYLLVNIVL 315
LT+P+ K+ + LG + + V+
Sbjct: 140 STSLTIPFFKDLSLDLGVILYIPFAYFVI 168
>gnl|CDD|219743 pfam08202, Mis12_component, Mis12-Mtw1 protein family. Mis12-Mtw1
is a eukaryotic conserved kinetochore protein that is
involved in chromosome segregation.
Length = 296
Score = 30.2 bits (68), Expect = 4.6
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 733 EKLMDNLSKNCQKLSANNKVEAWVNENELLAQARTPNSGQRTTNNSERTPSQNNPSSQRI 792
E+ + L + + L N+++ W LLA +++P+ E Q
Sbjct: 154 EENLAELKEKIKALK--NEIKEWAK---LLADSQSPDK--------EIQKEQK-LVDSTE 199
Query: 793 ANNPSNERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKSRTSRDSDETNS 849
A S+ + P T SSQ S A+ S IDEL + + S + ++E+
Sbjct: 200 AKIDSDTQEPPTTPSSSQILSDNANVFSKFETRIDELQDSVHKLNSCSVALNEESTQ 256
>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 29.6 bits (67), Expect = 5.2
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 15/111 (13%)
Query: 278 RLSQLIALRPYQLTLPYIKNNYVYLGF--MFFYLLVNIVLFTSRMYVFRKSNYYVIFARA 335
LS L + + LGF +F L + + + + R +
Sbjct: 36 YLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNR-----LYLRYI 90
Query: 336 CGQCLNFNCMFVLVLMLRHCITFLRTRGFSVFLPLDQHIYFHKMTGFFIFG 386
G +L+L+ + LR F G F+ G
Sbjct: 91 AG--------ILLILLGLLFLGVLRLPLLLRFARFQLKGKSVTALGAFLLG 133
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 30.5 bits (69), Expect = 5.3
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 805 TNISSQAKSSQASQPSDLVKTIDELNQQLSRAKS 838
+NI+SQ S+ Q ++L +I N+Q+++A +
Sbjct: 155 SNINSQL-SAMTDQVNNLTTSIASYNKQIAQASA 187
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 30.1 bits (68), Expect = 5.4
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 24/172 (13%)
Query: 305 MFFYLLVNIVLFT--SRMYV----FRKSNYYVIFARACGQCLNFNCMFVLVLMLRHCITF 358
+ +N VLF SR Y + ++ + L+L+ IT
Sbjct: 263 LIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLL-LISIPALLGLLLLAPPIITL 321
Query: 359 LRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSLNVLGDGTINKKGL---- 414
L ++ P+ + + G F+ S+ ++ L LG +
Sbjct: 322 LFGEKYASAAPI---LQLLALAGLFLSLVSLTSSL-------LQALGKQRLLLLISLISA 371
Query: 415 ---SLTEWLFTSRPGLFGLINGWANPTGVCLIIILTIMFICSQTFVRKSGSF 463
+ L R GL G A+ + L++ + +T
Sbjct: 372 LLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLL 423
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 29.2 bits (66), Expect = 5.5
Identities = 21/85 (24%), Positives = 26/85 (30%), Gaps = 23/85 (27%)
Query: 271 KKLA--NQSRLSQLIALRPYQLTLPYIKNNYVYLGFMFFYLLVNIVLFTSRMYVFRKSNY 328
KK A N+ L L + LG YLLV + F S F
Sbjct: 7 KKRAAKNKKILKYL---------------LLITLGINLLYLLVRLYFFYSS-PTFWSLIP 50
Query: 329 YVIFARACGQCLNFNCMFVLVLMLR 353
YV F+ + L M R
Sbjct: 51 YVFFS-----LPYIFSYYSLEKMAR 70
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 30.2 bits (67), Expect = 5.6
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 763 AQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDL 822
A N+ T N + TPS+N N +N T + +N ++ SS + S
Sbjct: 314 ANKTNTNTNTNTNNTNTSTPSKN-------TNTNTNSNTNTNSNTNANQGSSNNNSNSSA 366
Query: 823 VKTIDELNQQLSRAKS 838
I E + L +A S
Sbjct: 367 SAIIAEAQKHLGKAYS 382
>gnl|CDD|225338 COG2717, COG2717, Predicted membrane protein [Function unknown].
Length = 209
Score = 29.6 bits (67), Expect = 5.7
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 374 IYFHKMTGFFIFGYSVLHTIMHL---LNFSLNVLGDGTINKKGLSLTEWLFTSRPGLFGL 430
I + G + F Y++LH +L L L +LG + + +++
Sbjct: 74 IRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITI-------------- 119
Query: 431 INGWANPTGVCLIIILTIMFICS-QTFVRKSGS 462
G+ ++L + + S + R+ G
Sbjct: 120 --------GMIAFLLLIPLALTSFKWVRRRLGK 144
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase
(Delta6-FADS)-like CD includes the integral-membrane
enzymes: delta-4, delta-5, delta-6, delta-8,
delta-8-sphingolipid, and delta-11 desaturases found in
vertebrates, higher plants, fungi, and bacteria. These
desaturases are required for the synthesis of highly
unsaturated fatty acids (HUFAs), which are mainly
esterified into phospholipids and contribute to
maintaining membrane fluidity. While HUFAs may be
required for cold tolerance in bacteria, plants and
fish, the primary role of HUFAs in mammals is cell
signaling. These enzymes are described as front-end
desaturases because they introduce a double bond between
the pre-exiting double bond and the carboxyl (front) end
of the fatty acid. Various substrates are involved, with
both acyl-coenzyme A (CoA) and acyl-lipid desaturases
present in this CD. Acyl-lipid desaturases are localized
in the membranes of cyanobacterial thylakoid, plant
endoplasmic reticulum (ER), and plastid; and acyl-CoA
desaturases are present in ER membrane. ER-bound plant
acyl-lipid desaturases and acyl-CoA desaturases require
cytochrome b5 as an electron donor. Most of the
eukaryotic desaturase domains have an adjacent
N-terminal cytochrome b5-like domain. This domain family
has extensive hydrophobic regions that would be capable
of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH.
These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homolog,
stearoyl CoA desaturase.
Length = 204
Score = 29.5 bits (67), Expect = 6.0
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 352 LRHCITFLRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLL---NFSLNVLGDGT 408
L FL QH YF + + + V+ L F LN G
Sbjct: 77 LARSEPAFGKDQKKRFLHRYQHFYFFPLLALLLLAFLVVQLAGGLWLAVVFQLNHFGMPV 136
Query: 409 INKKGLSLTEWL 420
+ G S +WL
Sbjct: 137 EDPPGESKNDWL 148
>gnl|CDD|234300 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this
highly hydrophobic probable integral membrane family
belong to two classes. In one, a single copy of the
region modeled by This model represents essentially the
full length of a strongly hydrophobic protein of about
700 to 900 residues (variable because of long inserts in
some). The domain architecture of the other class
consists of an additional N-terminal region, two copies
of the region represented by this model, and three to
four repeats of TPR, or tetratricopeptide repeat. The
unusual species range includes several Archaea, several
Chloroflexi, and Clostridium phytofermentans. An unusual
motif YYYxG is present, and we suggest the name
Chlor_Arch_YYY protein. The function is unknown.
Length = 723
Score = 30.1 bits (68), Expect = 6.3
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 16/110 (14%)
Query: 382 FFIFGYSVLHTIMHLLNFSLNVLG-------DGTINKKGLSLTEWLFTSRPGLFGLINGW 434
F F LH M + F+L L ++ L L GL + N W
Sbjct: 266 LFSFLLGDLHAHMIAIPFTLLALALALAWWLRPKGEQRPRWLILLLLALVLGLLAVTNSW 325
Query: 435 ANPTGVCLIIILTIMFICSQTFVRKSGSFE---------LLFLGGFNVTL 475
P L ++ +G + + ++ L
Sbjct: 326 DFPIYAGLAGLVVFAAYGRPYRAPGNGWLREAVILALGQAVLVPVLSLLL 375
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 30.0 bits (68), Expect = 6.8
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 286 RPYQLTLPYIKNNYVYLGFMFFYLLVNIVLFTSRMYVFRKSNYYVIFARACGQCLNFNCM 345
RP + + N ++ F+ L++ +LF ++ Q L
Sbjct: 764 RPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823
Query: 346 FVLVLMLRHCITFL-RTRGFSVF 367
F ++++++ +T R+RG
Sbjct: 824 FTVLVLIQLLLTLAVRSRGRPFL 846
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 29.8 bits (67), Expect = 6.8
Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 13/185 (7%)
Query: 304 FMFFYLLVNIVLFTSRMYVFRKSN---YYVIFARACG-QCLNF--NCMFVLVLMLRHCIT 357
+ L+ L + + + +LVL+ +
Sbjct: 81 LLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRILLLVLLGSVLLG 140
Query: 358 FLR---TRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMH-LLNFSLNVLGDGTINKKG 413
L G ++ G + F + ++M L F +L G
Sbjct: 141 LLLALGLAGAGAEELA--LANLWRVLGVYAF-KNYAGSLMAAALLFPALLLWILGSWLLG 197
Query: 414 LSLTEWLFTSRPGLFGLINGWANPTGVCLIIILTIMFICSQTFVRKSGSFELLFLGGFNV 473
L L G + A + L+ + ++ + + + + L + V
Sbjct: 198 TLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLAALLALILIALV 257
Query: 474 TLQGF 478
++ F
Sbjct: 258 GIELF 262
>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion
transport and metabolism].
Length = 438
Score = 29.8 bits (67), Expect = 7.2
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 345 MFVLVLMLRHCITFLRTRGFSV---FLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSL 401
+ + L L I L TR + F LD+ FHK T + H + +
Sbjct: 44 LGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHNFILFIG--- 100
Query: 402 NVLGDGTINKKGLSLTEWLFTSRPGLFGLINGWANPTGVCLIIILTIMF 450
N L +N K + L L + I L +++
Sbjct: 101 NWLTLQLLNFKPAPVKPSLAGMWRSAKELGE-----WSAYIFIGLLLVW 144
>gnl|CDD|214461 MTH00214, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 168
Score = 28.8 bits (65), Expect = 7.4
Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 51/175 (29%)
Query: 305 MFFYLLVNIVLFTSRMYVFRKSN-YYVIFARACGQCLNFNCMFVLV---LMLRHCITFLR 360
++F L+ M V + Y+ + L+ L+L H +FL
Sbjct: 2 LYFVFLLMFGFLLGLMMVASSPSPYFGALGLV---------LLALLGCFLLLSHGNSFL- 51
Query: 361 TRGFSVFLPLDQHIYFHKM---------------------------TGFFIFGYSVLHTI 393
G +FL IY M F++ G +
Sbjct: 52 --GLILFL-----IYLGGMLVVFSYSAALAADPYPESWGGWSVLLFFLFYLLGLGFVGFY 104
Query: 394 MHLLNFSLNVLGDGTINKKGLSLTEWLFTSRPGLFGLINGWANPTGVCLIIILTI 448
+ L+ +G N LS L+ SR L+ G + L ++L +
Sbjct: 105 FYGGWEMLSWMGVDEANNLDLSGVSDLY-SRGFFLLLLGGVV--LFLVLFVVLEL 156
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 29.5 bits (66), Expect = 8.6
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 12/130 (9%)
Query: 731 QWEKLMDNLSKNCQKLSANNKVEAWVNENELLAQARTPNSGQRTTNNSERTPSQNNPSSQ 790
+W L + + ++ + + + + + S ++PSS
Sbjct: 353 KWLSLKTVVDHVLRDSQSSKIQ--------QIRDSISVSGSDYSNPGSSIDTPSSSPSSS 404
Query: 791 RIANNPSNERTPSQTNISSQAKSSQASQPSDL----VKTIDELNQQLSRAKSRTSRDSDE 846
I P + + ++ S++ + + + L S S D
Sbjct: 405 VIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDS 464
Query: 847 TNSPPKRNSV 856
SP +
Sbjct: 465 ETSPNSSTLL 474
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,821,592
Number of extensions: 4152995
Number of successful extensions: 4101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4065
Number of HSP's successfully gapped: 97
Length of query: 864
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 759
Effective length of database: 6,280,432
Effective search space: 4766847888
Effective search space used: 4766847888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)