RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8382
(864 letters)
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 126 bits (318), Expect = 5e-33
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 124 SGFDKGNLEWLEQLFRQ---TVGDEKEICRDDFKKIL----------------------- 157
+ F +E L +LF++ V D+ I +++F+ L
Sbjct: 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHN 99
Query: 158 --ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF 214
+ EF A+ F +P DDKI F F++YDL G I+ +E++ ++ A + E+GM
Sbjct: 100 GILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNL 159
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRWLVPPKPK 271
+ I+ + FE+AD+++ G I E ++ + +H LL+N+++ + + P
Sbjct: 160 KDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFPS 216
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 113 bits (285), Expect = 8e-29
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 29/166 (17%)
Query: 124 SGFDKGNLEWLEQLFRQ---TVGDEKEICRDDFKKIL----------------------- 157
+ F +E L +LF++ ++ D+ I +++F+ L
Sbjct: 29 TPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRN 88
Query: 158 --ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF 214
I EF+ ++ F +P +K+KF F++YDL G I+ +EL+ ++ A + E+ +
Sbjct: 89 GVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVL 148
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSIS 260
SE+ I+ + F AD +N G I + K+ + + L++N+++
Sbjct: 149 SEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKNMTLP 194
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 111 bits (278), Expect = 6e-28
Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 126 FDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL---------------------------I 158
+ F + + +FK+ I
Sbjct: 11 LSATECHQWYKKFMTECPSGQ-LTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYI 69
Query: 159 TKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQ 218
E++ A+ D K+++ F++YD+DG+G I EL ++++A N
Sbjct: 70 DFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCN-EAMT 128
Query: 219 IDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRWLVPPKPKK 272
+ T +F+ D G ++ E ++K LL+ L+ S+D + +
Sbjct: 129 AEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQN 182
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 108 bits (270), Expect = 3e-27
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 120 CLPRSGFD-----KGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQS 174
L RS F G+ E+ Q+F ++ ++ I + +TK+E D Q Q
Sbjct: 42 VLLRSRFGKCIGMDGSDEFAVQMFD-SLARKRGIVKQV-----LTKDELKDFYEQLTDQG 95
Query: 175 PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
D++++ F + D + DG + +E++ ++ N + +E+ D T + E+ D N
Sbjct: 96 FDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTN 155
Query: 235 RGAITYESLKNQLEKH 250
G I E L+ L +
Sbjct: 156 LGYIEMEDLEALLLQS 171
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 105 bits (264), Expect = 8e-26
Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 32/167 (19%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
S F K L+ L + F+ + + FK+I
Sbjct: 59 SKFTKKELQILYRGFKNECPS-GVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNG 117
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG----M 212
++ +FI + + +K+ + F +YD++ DG I +E+ +M+A + G
Sbjct: 118 AVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYP 177
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E+ F+ D G +T + +K ++ ++ +
Sbjct: 178 VLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQL 224
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 102 bits (257), Expect = 2e-25
Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 32/168 (19%)
Query: 123 RSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------- 157
++ F K L+ L + F+ + + FK+I
Sbjct: 12 QTNFTKRELQVLYRGFKNEXPS-GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQT 70
Query: 158 --ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG---- 211
+ +F+ A+ + +K+++ F +YD++ DG I +E+ +++A + G
Sbjct: 71 GSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTY 130
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E+ F+ D G +T + ++ ++ +L +
Sbjct: 131 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL 178
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 103 bits (259), Expect = 3e-25
Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 32/168 (19%)
Query: 123 RSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------- 157
++ F K L+ L + F+ + + FK+I
Sbjct: 45 QTNFTKRELQVLYRGFKNECPS-GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQT 103
Query: 158 --ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG---- 211
+ +F+ A+ + +K+++ F +YD++ DG I +E+ +++A + G
Sbjct: 104 GSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTY 163
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E+ F+ D G +T + ++ ++ +L +
Sbjct: 164 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 211
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 102 bits (255), Expect = 4e-25
Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 89 SGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEWLEQLFRQTVGDEK-- 146
+ K + + F + + + + + + + L +
Sbjct: 12 TFLTKQEILLAHRRFCELLPQEQRSVES---------SLRAQVPFEQILSLPELKANPFK 62
Query: 147 -EICR---DDFKKILITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQH 201
ICR K ++ +F+D + F+ + D K + FR++D D DG + ++L
Sbjct: 63 ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSR 122
Query: 202 VMRACMEEN-GMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSIS 260
++ E + S ++ L + E++D + G I ++ + + + I
Sbjct: 123 LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIV 182
Query: 261 I 261
+
Sbjct: 183 L 183
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 102 bits (256), Expect = 6e-25
Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 30/167 (17%)
Query: 123 RSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------- 157
+ + F +FK +L
Sbjct: 13 QKAVPTQETHVWYRTFMMEYPSGL-QTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKD 71
Query: 158 --ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFS 215
+ EFI A++ + + K+K+ F++YD DG+G I EL + A NG Q
Sbjct: 72 GFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQ-- 129
Query: 216 EEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
+ +F D N G +T E N + K LLE + S D
Sbjct: 130 TLSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFD 176
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 102 bits (254), Expect = 3e-24
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 32/168 (19%)
Query: 123 RSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------- 157
++ F K L+ L + F+ + D FK I
Sbjct: 85 QTKFTKKELQSLYRGFKNECPT-GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGN 143
Query: 158 --ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG---- 211
I +F+ + + +K+K+ F +YD++ DG I +E+ +M++ + G
Sbjct: 144 GAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTY 203
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E+ F+ D G +T + +K ++ ++ +
Sbjct: 204 PILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQL 251
Score = 33.5 bits (76), Expect = 0.24
Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 42/195 (21%)
Query: 13 RSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNISDLYDKVHSFVWYSSQYGHF 72
++ F K L+ L + F+ + D FK I D ++ Y HF
Sbjct: 85 QTKFTKKELQSLYRGFKNECPT-GLVDEDTFKLIY--SQFFPQGD--------ATTYAHF 133
Query: 73 TPCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLE 132
FD + V S + L + +K
Sbjct: 134 LFN--------------AFDADGNGAIHF--EDFVVGLS-------ILLRGTVHEK---- 166
Query: 133 WLEQLFRQ-TVGDEKEICRDDFKKILITKNEFIDAMHQFAG--QSPDDKIKFLFRVYDLD 189
L+ F + + I +++ I+ + + + +P + ++ F+ D +
Sbjct: 167 -LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN 225
Query: 190 GDGLIQHKELQHVMR 204
DG++ E +
Sbjct: 226 QDGVVTIDEFLETCQ 240
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 98.0 bits (244), Expect = 2e-23
Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
+ FDK L+ + F + + + +F+KI
Sbjct: 20 TRFDKKELQQWYKGFFKDCPSGH-LNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNG 78
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG----M 212
I EFI A+ + +DK+ + F++YDLD +GLI + E+ ++ A + G +
Sbjct: 79 YIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E+ + +F D G +T E ++ ++ LS+
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185
Score = 40.6 bits (95), Expect = 8e-04
Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 40/193 (20%)
Query: 14 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNISDLYDKVHSFVWYSSQYGHFT 73
+ FDK L+ + F + + + +F+KI +V+
Sbjct: 20 TRFDKKELQQWYKGFFKDCPSGH-LNKSEFQKIYKQFFPFGDPSAFAEYVFNV------- 71
Query: 74 PCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEW 133
FD +++ F++ + S+ G L W
Sbjct: 72 -----------------FDADKNGYID--FKEFICALSVTSR---------GELNDKLIW 103
Query: 134 LEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAG--QSPDDKIKFLFRVYDLDGD 191
QL+ + + I D+ +I+ + + +M + +P+ ++ +F + D + D
Sbjct: 104 AFQLY--DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161
Query: 192 GLIQHKELQHVMR 204
G + +E +
Sbjct: 162 GQLTLEEFCEGSK 174
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 96.8 bits (241), Expect = 4e-23
Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 32/167 (19%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
+ F + ++ + F + + + F+KI
Sbjct: 20 TYFTEKEVQQWYKGFIKDCPSGQ-LDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDG 78
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG----M 212
I +EFI A+ + + D+K+++ F++YDLD DG I E+ ++ A + G +
Sbjct: 79 RIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E + +F D G +T + + + +++ LS+
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSL 185
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 96.1 bits (239), Expect = 7e-23
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 32/167 (19%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
+ FD+ ++ + F + ++ R+DF KI
Sbjct: 20 TYFDRREIQQWHKGFLRDCPS-GQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNG 78
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF-- 214
I EFI + + + ++K+ + F +YDL+ DG I E+ ++ + + G
Sbjct: 79 FIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTL 138
Query: 215 --SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSI 259
E + +F+ D G IT + + + ++ L++
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNL 185
Score = 35.6 bits (82), Expect = 0.036
Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 44/195 (22%)
Query: 14 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNISDLYDKVHSFVWYSSQYGHFT 73
+ FD+ ++ + F + ++ R+DF KI
Sbjct: 20 TYFDRREIQQWHKGFLRDCPS-GQLAREDFVKI--------------------------- 51
Query: 74 PCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEW 133
Y F P + LF + IH S +G LE
Sbjct: 52 --YKQFFPFGSPED----------FANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEE 99
Query: 134 -LEQLFRQ-TVGDEKEICRDDFKKILITKNEFIDAMHQFAG--QSPDDKIKFLFRVYDLD 189
L F + + I D+ I+ + + + +M +P+ ++K +F++ D +
Sbjct: 100 KLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKN 159
Query: 190 GDGLIQHKELQHVMR 204
DG I E + +
Sbjct: 160 EDGYITLDEFREGSK 174
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 96.1 bits (239), Expect = 8e-23
Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 32/170 (18%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
+ F + ++ + F + + ++FKKI
Sbjct: 20 TDFTEHEIQEWYKGFLRDCPS-GHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDG 78
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG----M 212
I EFI A+ + + K+K+ F +YDLDG+G I E+ +++A + M
Sbjct: 79 TIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
E + T +F D+ G ++ E + ++ L
Sbjct: 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPS 188
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 96.0 bits (239), Expect = 1e-22
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 43/187 (22%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEK-EICRDDFKKIL----------------------ITK 160
+GF + L F E + R+DF++I +
Sbjct: 21 TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNF 80
Query: 161 NEFIDAMHQFAGQSP----------------DDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
F+ + F +K+ F FR+YDLD D I EL V+R
Sbjct: 81 RGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR 140
Query: 205 ACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRW 264
+ G+ S+EQ+ + ++AD + AI++ LEK + + +SI
Sbjct: 141 MMV---GVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKV-DVEQKMSIRFLHK 196
Query: 265 LVPPKPK 271
L
Sbjct: 197 LAAALEH 203
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 95.3 bits (237), Expect = 2e-22
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 161 NEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACM-EENGMQFSEEQ 218
+F+D + F+ + D K + FR++D D DG + ++L ++ E + S +
Sbjct: 112 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASE 171
Query: 219 IDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
+ L + E++D + G I ++ + + + I +
Sbjct: 172 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL 214
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 92.1 bits (229), Expect = 2e-21
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 44/179 (24%)
Query: 123 RSGFDKGNLEWLEQLFRQTVGDEK-EICRDDFKKIL----------------------IT 159
+GF + +L L FR ++K + R D ++I +
Sbjct: 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVD 79
Query: 160 KNEFIDAMHQFAGQSP-----------------DDKIKFLFRVYDLDGDGLIQHKELQHV 202
F+ + F +K+ + F++YDLD DG I E+ V
Sbjct: 80 FPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV 139
Query: 203 MRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
+R + G+Q +EEQ++++ ++AD + GA+++ LEK + + +SI I
Sbjct: 140 LRLMV---GVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM-DVEQKMSIRI 194
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 88.9 bits (220), Expect = 3e-20
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 34/171 (19%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
+ F + L Q F + + I + F+ I
Sbjct: 28 TKFSEEELCSWYQSFLKDCPTGR-ITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG 86
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG----- 211
+ E++ A+H + K+++ F +YD+DG+G I E+ ++ A +
Sbjct: 87 TLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVK 146
Query: 212 -MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
+ E + +++ + +T + + +L +
Sbjct: 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQFEP 197
Score = 32.6 bits (74), Expect = 0.39
Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 42/195 (21%)
Query: 14 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNISDLYDKVHSFVWYSSQYGHFT 73
+ F + L Q F + + I + F+ I V+ S
Sbjct: 28 TKFSEEELCSWYQSFLKDCPTGR-ITQQQFQSIYAKFFPDTDPKAYAQHVFRS------- 79
Query: 74 PCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEW 133
FD L+ F++ V + G LEW
Sbjct: 80 -----------------FDSNLDGTLD--FKEYVIALHMTTA---------GKTNQKLEW 111
Query: 134 LEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFA----GQSPDDKIKFLFRVYDLD 189
L+ V I +++ +I++ + I +P+ + + +++ + +
Sbjct: 112 AFSLY--DVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKN 169
Query: 190 GDGLIQHKELQHVMR 204
D + KE
Sbjct: 170 DDDKLTEKEFIEGTL 184
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 83.7 bits (207), Expect = 2e-18
Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 38/183 (20%)
Query: 124 SGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL-------------------------- 157
D L+ + F + + +FK+
Sbjct: 17 GAADAAQLQEWYKKFLEECPSGT-LFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNT 75
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
I E++ A++ + + K+K+ F++YD D +G I +EL ++ + + E
Sbjct: 76 IDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV 135
Query: 218 QIDHLTMA---------LFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDR--WLV 266
+ + +F D G ++ + +++ L + ++ W+
Sbjct: 136 EAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQMDLNPSSWIS 195
Query: 267 PPK 269
+
Sbjct: 196 QQR 198
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 80.7 bits (200), Expect = 5e-18
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 162 EFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EFI+ + QF+ + + K++F FR+YD+D DG I + EL V++ G + Q+
Sbjct: 59 EFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLK---MMVGNNLKDTQLQ 115
Query: 221 HLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
+ +AD + G I++E + + + + + +
Sbjct: 116 QIVDKTIINADKDGDGRISFEEFCAVVGG-LDIHKKMVVDV 155
Score = 34.5 bits (80), Expect = 0.059
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGA 237
++ F+ DLD G + +E + + + + + D++ G
Sbjct: 7 RLGKRFKKLDLDNSGSLSVEEFM-SLPELQQN---PLVQR--------VIDIFDTDGNGE 54
Query: 238 ITYE 241
+ ++
Sbjct: 55 VDFK 58
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III,
poly(ADP-ribose) polymerase-1, DNA polymerase beta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 129
Score = 75.7 bits (186), Expect = 2e-16
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 523 KLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGSKYNAALKWGFPSVNKKWLLECA 582
+ LGA Y+ ++ + STHL+C + KY+ L G V K+W+L+C
Sbjct: 43 DKALELGAKYRPDWTRD---------STHLICAFANTPKYSQVLGLGGRIVRKEWVLDCH 93
Query: 583 RTGKRVSEQQYLTGSDEASQNVGSQSNGFGLQQNVG 618
R +R+ Q+YL +S S+ G + G
Sbjct: 94 RMRRRLPSQRYLMAGPGSSSEEDEASHSGGSGPSSG 129
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 70.5 bits (172), Expect = 2e-13
Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 14/183 (7%)
Query: 72 FTPCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQ-------TVAYTSLR--IHHNLVCLP 122
+ + R N +++R+ ++ L+ + +
Sbjct: 79 LANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHK 138
Query: 123 RSGFDKGNLEWLEQLFRQ--TVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDK-- 178
+ E+ + + + D + + +D +IL + F+ A + K
Sbjct: 139 KKIPPNKLDEYTDAMMKIFDKNKDGR-LDLNDLARILALQENFLLQFKMDASSQVERKRD 197
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+ +F YD+ G ++ E+ ++ ME S +D L D G I
Sbjct: 198 FEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKI 257
Query: 239 TYE 241
Sbjct: 258 QKS 260
Score = 62.8 bits (152), Expect = 8e-11
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 143 GDEKEICRDDFKK-ILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQH 201
D + + ++ IL + F+ + A + ++R YD D G I EL++
Sbjct: 70 FDGR-LQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKN 128
Query: 202 VMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
++ ++ + ++D T A+ + D G +
Sbjct: 129 FLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 47.8 bits (113), Expect = 7e-06
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 182 LFRVYDLDGDGLIQHKELQHVMRACMEENGM--QFSEEQIDHLTMALFEDADSENRGAIT 239
+++ +D D +G I+ KEL R +++ + ++E++ + + D+ G +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 240 YESL 243
E L
Sbjct: 76 IEEL 79
Score = 42.7 bits (100), Expect = 3e-04
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDK---------IKFLFRVYDLDGDGLIQHKELQHVMRACM 207
I E D P DK K YD DG +Q +EL +++
Sbjct: 28 IEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQE 87
Query: 208 EENGMQFSEEQ----IDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
E + F E M ++ D+++ G I+ LKN L+
Sbjct: 88 ENFLLIFRREAPLDNSVEF-MKIWRKYDADSSGYISAAELKNFLKDLF 134
Score = 38.1 bits (88), Expect = 0.007
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 132 EWLEQLFRQTVGDEK-EICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDG 190
E++F + + + K+ +G D + L D++
Sbjct: 196 RDFEKIFAHYDVSRTGALEGPEVDGFV--KDMMELVRPSISGGDLDKFRECLLTHCDMNK 253
Query: 191 DGLIQHKELQHVM 203
DG IQ EL +
Sbjct: 254 DGKIQKSELALCL 266
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 64.2 bits (157), Expect = 7e-13
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ E + +++I+ FRV D DG+G I EL+HVM G + ++E
Sbjct: 10 GSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNL----GEKLTDE 65
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
++D + +AD + G + YE
Sbjct: 66 EVD----EMIREADIDGDGQVNYE 85
Score = 29.9 bits (68), Expect = 0.74
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 145 EKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKE 198
E+EI R+ F+ I+ E M + D+++ + R D+DGDG + ++E
Sbjct: 28 EEEI-REAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 86
Query: 199 LQHVMRA 205
+M A
Sbjct: 87 FVQMMTA 93
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 65.0 bits (158), Expect = 1e-12
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 162 EFIDAMHQFAGQ--SPDDKIKFLFRVYDLDGDGLIQHKEL----QHVMRACMEENGMQFS 215
E ++ + SP + F+++D DG+ L+ EL HV + E S
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 216 EEQIDHLTMALFEDADSENRGAITYE 241
E+++ ++ + D D N G I Y
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYIDYA 136
Score = 31.5 bits (71), Expect = 0.49
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 157 LITKNEFIDAMHQFAGQSPDDK------------IKFLFRVYDLDGDGLIQHKELQHVMR 204
L+ E A+ + ++ I + R D + DG I + E ++
Sbjct: 84 LLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 63.6 bits (156), Expect = 4e-12
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQFAGQ-SPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ +F+ M Q + ++I F+++D D G I K L+ V + E G ++
Sbjct: 59 MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAK----ELGENLTD 114
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++ + ++AD + G ++ +
Sbjct: 115 EELQ----EMIDEADRDGDGEVSEQ 135
Score = 48.6 bits (117), Expect = 7e-07
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
I+ F ++D DG G I KEL+ MRA G + +E+I + + D E G +
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRAL----GFEPKKEEIK----KMISEIDKEGTGKM 59
Query: 239 TYE 241
+
Sbjct: 60 NFG 62
Score = 42.5 bits (101), Expect = 9e-05
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I E AM G P ++IK + D +G G + + VM M E ++
Sbjct: 23 IDVKELKVAMRAL-GFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKD---TK 78
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E+I + F+ D + G I++++LK ++ G ENL+
Sbjct: 79 EEI----LKAFKLFDDDETGKISFKNLKRVAKELG---ENLT 113
Score = 29.4 bits (67), Expect = 2.6
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
I+ + D++++ + D DGDG + +E +M+
Sbjct: 96 ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo
sapiens} PDB: 3ktf_A* 2wt8_A*
Length = 107
Score = 62.6 bits (152), Expect = 4e-12
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 522 TKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGSKYNAALKWGFPSVNKKWLLEC 581
T +GA + F K+ TH++ S ++ A K G V+ W+ +C
Sbjct: 31 TTQLVDMGAKVSKTFNKQ---------VTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKC 81
Query: 582 ARTGKRVSEQQYLTGSDE 599
G + E + +
Sbjct: 82 RTAGAHIDESLFPAANMN 99
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 62.2 bits (152), Expect = 6e-12
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+F + S +D +K +F+ D D G I+ +EL+ V++ +G ++
Sbjct: 25 FNHKKFFALVGL-KAMSAND-VKKVFKAIDADASGFIEEEELKFVLK-SFAADGRDLTDA 81
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
+ A + AD + G I +
Sbjct: 82 ETK----AFLKAADKDGDGKIGID 101
Score = 33.7 bits (78), Expect = 0.056
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 12/89 (13%)
Query: 170 FAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
D IK + +G HK+ ++ S + +F+
Sbjct: 3 AKDLLKADDIKKALD--AVKAEGSFNHKKFFALVGLKAM------SANDV----KKVFKA 50
Query: 230 ADSENRGAITYESLKNQLEKHGGLLENLS 258
D++ G I E LK L+ +L+
Sbjct: 51 IDADASGFIEEEELKFVLKSFAADGRDLT 79
Score = 31.8 bits (73), Expect = 0.22
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 129 GNLEWLEQLFRQTVG---DEKEICRDDFKKI------LITKNEFIDAMHQFA--GQSPDD 177
G+ + F VG + FK I I + E + FA G+ D
Sbjct: 23 GSFNHKK--FFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTD 80
Query: 178 K-IKFLFRVYDLDGDGLIQHKELQHVMR 204
K + D DGDG I E + ++
Sbjct: 81 AETKAFLKAADKDGDGKIGIDEFETLVH 108
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 63.0 bits (154), Expect = 9e-12
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ ++F M + + P D+IK F+++D D G I K L+ V + E G ++
Sbjct: 76 MKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAK----ELGETLTD 131
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++ A+ E+ D + G I
Sbjct: 132 EELR----AMIEEFDLDGDGEINEN 152
Score = 47.9 bits (115), Expect = 2e-06
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
I F ++D++ DG + + EL+ M+A G + + +I L ++ DSE R +
Sbjct: 25 IYEAFSLFDMNNDGFLDYHELKVAMKAL----GFELPKREIL----DLIDEYDSEGRHLM 76
Query: 239 TYE 241
Y+
Sbjct: 77 KYD 79
Score = 41.8 bits (99), Expect = 2e-04
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ +E AM G + I L YD +G L+++ + VM + +
Sbjct: 40 LDYHELKVAMKAL-GFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILK------R 92
Query: 217 EQIDHLTMA--LFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+ +D + A LF D ++ G I+ ++L+ ++ G E L+
Sbjct: 93 DPLDEIKRAFQLF---DDDHTGKISIKNLRRVAKELG---ETLT 130
Score = 28.7 bits (65), Expect = 5.8
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVM 203
I+ + D++++ + +DLDGDG I E +
Sbjct: 113 ISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 61.1 bits (149), Expect = 1e-11
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 152 DFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG 211
++K F + + ++PD IK +F + D D G I+ +ELQ ++ +
Sbjct: 26 NYK-------SFFSTVGL-SSKTPDQ-IKKVFGILDQDKSGFIEEEELQLFLKN-FSSSA 75
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYE 241
+ + A D++ G I E
Sbjct: 76 RVLTSAETK----AFLAAGDTDGDGKIGVE 101
Score = 35.7 bits (83), Expect = 0.010
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 158 ITKNEFIDAMHQFAGQSP---DDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I + E + F+ + + K D DGDG I +E Q +++A
Sbjct: 59 IEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVKA 109
Score = 31.8 bits (73), Expect = 0.24
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 14/91 (15%)
Query: 169 QFAGQSPDDKIKFLFRVYDLDGDGLIQHKE-LQHVMRACMEENGMQFSEEQIDHLTMALF 227
I+ +K V + +QI +F
Sbjct: 2 AITDILSAKDIESALS--SCQAADSFNYKSFFSTVGL-------SSKTPDQI----KKVF 48
Query: 228 EDADSENRGAITYESLKNQLEKHGGLLENLS 258
D + G I E L+ L+ L+
Sbjct: 49 GILDQDKSGFIEEEELQLFLKNFSSSARVLT 79
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 62.8 bits (153), Expect = 1e-11
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-------IKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
IT+ EF+ + PD + V D DGDG + + + A
Sbjct: 72 ITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTA----- 126
Query: 211 GMQFSEEQIDHLTMALFEDADSENRGAITYE 241
E+ D++ G +
Sbjct: 127 -FGVPEDLAR----QAAAALDTDGDGKVGET 152
Score = 55.1 bits (133), Expect = 6e-09
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMA-------LFE 228
+ +I F +D DG+G I + +A + E G+ ++ L L
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 229 DADSENRGAITYE 241
AD + IT E
Sbjct: 63 IADRDGDQRITRE 75
Score = 45.9 bits (109), Expect = 9e-06
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 158 ITKNEFIDAMHQFA---GQSPDDK------------IKFLFRVYDLDGDGLIQHKELQHV 202
I +++F A G + + L + D DGD I +E
Sbjct: 21 IDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTG 80
Query: 203 MRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
+ + +F+E L A AD++ GA+T L G + +
Sbjct: 81 AVKRLRDKPDRFAEMARPFL-HAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAA 139
Query: 263 R 263
Sbjct: 140 A 140
Score = 38.2 bits (89), Expect = 0.004
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 131 LEWLEQLFRQTVGDEKEICRDDFKKI----------LITKNEFIDAMHQFAGQSPDDKIK 180
+ + R E+ R +T + A+ F P+D +
Sbjct: 78 VTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGV--PEDLAR 135
Query: 181 FLFRVYDLDGDGLIQHKELQHVMRA 205
D DGDG + E+
Sbjct: 136 QAAAALDTDGDGKVGETEIVPAFAR 160
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 62.2 bits (152), Expect = 2e-11
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 161 NEFIDAMHQFAGQSPDDK-----IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFS 215
++F++ M D ++ FR +D +GDG I EL+ MRA +
Sbjct: 67 DDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ---VG 123
Query: 216 EEQIDHLTMALFEDADSENRGAITYE 241
I+ + D D G + +E
Sbjct: 124 HRDIE----EIIRDVDLNGDGRVDFE 145
Score = 48.3 bits (116), Expect = 1e-06
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
++ FR +D D DG I ++L + MR G +E ++ L + + G +
Sbjct: 13 LREAFREFDKDKDGYINCRDLGNCMRTM----GYMPTEMELI----ELSQQINMNLGGHV 64
Query: 239 TYE 241
++
Sbjct: 65 DFD 67
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I + + M G P + + L + +++ G + + +M +
Sbjct: 28 INCRDLGNCMRTM-GYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIG 86
Query: 217 EQIDHLTMA--LFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
L A F D+ G I+ L+ + G +
Sbjct: 87 V--KELRDAFREF---DTNGDGEISTSELREAMRALLG--HQVG 123
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 158 ITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
I+ +E +AM G I+ + R DL+GDG + +E +M
Sbjct: 105 ISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
cell cycle checkpoints, acetylation, cytoplasm,
cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens}
PDB: 3pd7_A* 3jve_A*
Length = 107
Score = 60.7 bits (147), Expect = 2e-11
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 498 PTFHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTC 557
HK+ C+S K ++ + + ++ LGA Y+ F + TH +
Sbjct: 14 KPLHKVVVCVSKK---LSKKQSELNGIAASLGADYRRSF---------DETVTHFIYQGR 61
Query: 558 SGS---KYNAALKWGFPSVNKKWLLECARTGKRVSEQQY 593
+Y + + G V++ WLL+CA+ K + E Y
Sbjct: 62 PNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLY 100
Score = 30.2 bits (68), Expect = 0.88
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 485 DDSVTHVV-LGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
D++VTH + G T + + H+V+ WL
Sbjct: 50 DETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLD 87
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 62.2 bits (152), Expect = 2e-11
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I F+ + G P+D I F+V D DG G I+ L+ ++ G +F+
Sbjct: 75 INFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLT----TGGGRFTP 130
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E+I ++ + G + Y+
Sbjct: 131 EEIK----NMWAAFPPDVAGNVDYK 151
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F V D + DG+I +L+ A N E++D + E G I
Sbjct: 27 FKEAFTVIDQNADGIIDKDDLRETFAAMGRLN---VKNEELDAM--------IKEASGPI 75
Query: 239 TYE 241
+
Sbjct: 76 NFT 78
Score = 34.5 bits (80), Expect = 0.055
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE 209
I K+ + + G+ ++IK ++ + D G + +K + +V+ +
Sbjct: 112 IKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHGEDA 163
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 61.7 bits (151), Expect = 2e-11
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I EF+ M + + ++++ F+V+D DG+GLI EL+HVM G + ++
Sbjct: 63 IDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNL----GEKLTD 118
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
+++D + +AD + G I YE
Sbjct: 119 DEVD----EMIREADIDGDGHINYE 139
Score = 46.7 bits (112), Expect = 3e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D DGDG I KEL VMR+ G +E ++ + + D++ G I
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSL----GQNPTEAEL----QDMINEVDADGNGTI 63
Query: 239 TYE 241
+
Sbjct: 64 DFP 66
Score = 39.8 bits (94), Expect = 7e-04
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
IT E M GQ+P + ++ + D DG+G I E +M M+E SE
Sbjct: 27 ITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQD---SE 82
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E++ + F+ D + G I+ L++ + G E L+
Sbjct: 83 EEL----IEAFKVFDRDGNGLISAAELRHVMTNLG---EKLT 117
Score = 27.8 bits (63), Expect = 9.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I+ E M + DD++ + R D+DGDG I ++E +M +
Sbjct: 100 ISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 60.4 bits (147), Expect = 2e-11
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+F + S +K +FR D D G + EL++ ++ + + + +E
Sbjct: 24 FEPQKFFQTSG-LSKMSASQ-VKDIFRFIDNDQSGYLDGDELKYFLQK-FQSDARELTES 80
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
+ +L + AD++ G I +
Sbjct: 81 ETK----SLMDAADNDGDGKIGAD 100
Score = 35.7 bits (83), Expect = 0.009
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 138 FRQTVG---DEKEICRDDFKKI------LITKNEFIDAMHQFAGQS---PDDKIKFLFRV 185
F QT G +D F+ I + +E + +F + + + K L
Sbjct: 29 FFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDA 88
Query: 186 YDLDGDGLIQHKELQHVMRA 205
D DGDG I E Q ++ +
Sbjct: 89 ADNDGDGKIGADEFQEMVHS 108
Score = 35.7 bits (83), Expect = 0.009
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 12/89 (13%)
Query: 170 FAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
+ I + + + ++ S+ + +F
Sbjct: 2 ITDILSAEDIAAALQ--ECQDPDTFEPQKFFQTSG---------LSKMSASQV-KDIFRF 49
Query: 230 ADSENRGAITYESLKNQLEKHGGLLENLS 258
D++ G + + LK L+K L+
Sbjct: 50 IDNDQSGYLDGDELKYFLQKFQSDARELT 78
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 61.4 bits (150), Expect = 2e-11
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 158 ITKNEFIDAMH-QFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I F+ + G P+D I+ F +D + G I L+ ++ G +F++
Sbjct: 56 INFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLT----TMGDRFTD 111
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGG 252
E++D ++ +A + +G Y L KHG
Sbjct: 112 EEVD----EMYREAPIDKKGNFNYVEFTRIL-KHGA 142
Score = 40.9 bits (97), Expect = 3e-04
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
F + D + DG I ++L ++ + G ++E ++ + SE G I +
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASM----GKNPTDEYLEGM--------MSEAPGPINFT 59
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 60.0 bits (146), Expect = 3e-11
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+F + +S DD +K +F + D D G I+ EL +++ + S +
Sbjct: 24 FDHKKFFQMVG-LKKKSADD-VKKVFHILDKDKSGFIEEDELGSILKG-FSSDARDLSAK 80
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
+ L D + G I E
Sbjct: 81 ETK----TLMAAGDKDGDGKIGVE 100
Score = 36.1 bits (84), Expect = 0.008
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 170 FAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
+ IK + HK+ ++ ++ D + F
Sbjct: 2 MTDLLSAEDIKK--AIGAFTAADSFDHKKFFQMVG---------LKKKSADDVKKV-FHI 49
Query: 230 ADSENRGAITYESLKNQLEKHGGLLENLS 258
D + G I + L + L+ +LS
Sbjct: 50 LDKDKSGFIEEDELGSILKGFSSDARDLS 78
Score = 35.3 bits (82), Expect = 0.012
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 138 FRQTVG-DEKEICRDDFKKI----------LITKNEFIDAMHQFAGQS---PDDKIKFLF 183
F Q VG +K DD KK+ I ++E + F+ + + K L
Sbjct: 29 FFQMVGLKKKSA--DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLM 86
Query: 184 RVYDLDGDGLIQHKELQHVMR 204
D DGDG I +E ++
Sbjct: 87 AAGDKDGDGKIGVEEFSTLVA 107
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing
factor, phosphoprotein, polymorphism, proto-oncogene,
structural genomics; 1.48A {Homo sapiens}
Length = 112
Score = 60.3 bits (146), Expect = 3e-11
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 12/97 (12%)
Query: 498 PTFHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTC 557
P F E +++++ G Y +R THLV
Sbjct: 20 PPFQDCILSFL---GFSDEEKTNMEEMTEMQGGKYLPLGDER---------CTHLVVEEN 67
Query: 558 SGSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
V ++W + R E YL
Sbjct: 68 IVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMYL 104
Score = 33.3 bits (76), Expect = 0.088
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 485 DDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWL 519
D+ TH+V L S K +VV EW
Sbjct: 56 DERCTHLV--VEENIVKDLPFEPSKKLYVVKQEWF 88
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 59.9 bits (146), Expect = 3e-11
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EF + A +S DD +K F V D D G I+ EL+ ++ + ++ +
Sbjct: 27 KEFFAKVGL-ASKSLDD-VKKAFYVIDQDKSGFIEEDELKLFLQ-NFSPSARALTDAETK 83
Query: 221 HLTMALFEDADSENRGAITYE 241
A D D + G I +
Sbjct: 84 ----AFLADGDKDGDGMIGVD 100
Score = 33.7 bits (78), Expect = 0.051
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 158 ITKNEFIDAMHQFAGQSP---DDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I ++E + F+ + D + K D DGDG+I E +++A
Sbjct: 58 IEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA 108
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 61.8 bits (151), Expect = 4e-11
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I EF+ M + + +++I+ FRV+D DG+G I EL+HVM G + ++
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL----GEKLTD 119
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++D + +AD + G + YE
Sbjct: 120 EEVD----EMIREADIDGDGQVNYE 140
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D DGDG I KEL VMR+ G +E ++ + + D++ G I
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSL----GQNPTEAELQ----DMINEVDADGNGTI 64
Query: 239 TYE 241
+
Sbjct: 65 DFP 67
Score = 41.0 bits (97), Expect = 4e-04
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
I+ E M + D+++ + R D+DGDG + ++E +M A G +E
Sbjct: 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKE 160
Query: 218 QIDHLTMALFEDADSENRGAIT 239
I R
Sbjct: 161 VI----RNKIRAIGKMARVFSV 178
Score = 40.2 bits (95), Expect = 7e-04
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
IT E M GQ+P + +++ + D DG+G I E +M M++ SE
Sbjct: 28 ITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD---SE 83
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E+I F D + G I+ L++ + G E L+
Sbjct: 84 EEI----REAFRVFDKDGNGYISAAELRHVMTNLG---EKLT 118
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 61.1 bits (149), Expect = 4e-11
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 158 ITKNEFIDAMHQF----AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQ 213
I EF+ M + A ++++ FR++D + DG I +EL ++RA G
Sbjct: 73 IDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRAT----GEH 128
Query: 214 FSEEQIDHLTMALFEDADSENRGAITYE 241
+EE I+ L +D+D N G I ++
Sbjct: 129 VTEEDIE----DLMKDSDKNNDGRIDFD 152
Score = 48.0 bits (115), Expect = 2e-06
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D DG G I KEL VMR G ++E++D A+ E+ D + G I
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRML----GQNPTKEELD----AIIEEVDEDGSGTI 73
Query: 239 TYE 241
+E
Sbjct: 74 DFE 76
Score = 44.9 bits (107), Expect = 2e-05
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I+ E M GQ+P + + + D DG G I +E +M M+E+ SE
Sbjct: 37 ISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSE 95
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E++ F D G I E L L G E+++
Sbjct: 96 EEL----ANCFRIFDKNADGFIDIEELGEILRATG---EHVT 130
Score = 31.0 bits (71), Expect = 0.78
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I E + + ++ I+ L + D + DG I E +M
Sbjct: 113 IDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG 160
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 60.6 bits (148), Expect = 7e-11
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EFI A +D + F +D DG G I ELQ E G+ + +I+
Sbjct: 83 KEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACE----EFGV--EDVRIE 136
Query: 221 HLTMALFEDADSENRGAITYE 241
L D D +N G I Y
Sbjct: 137 ----ELMRDVDQDNDGRIDYN 153
Score = 51.0 bits (123), Expect = 1e-07
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 161 NEFIDAMHQFAGQ--SPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
N+F + + S ++ +K +F + D D G I +EL+ ++ G E
Sbjct: 7 NKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRV----GANLKE 62
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
+I L + AD +N G I Y+
Sbjct: 63 SEIL----DLMQAADVDNSGTIDYK 83
Score = 41.3 bits (98), Expect = 3e-04
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
IT E + + + +I L + D+D G I +KE + E+
Sbjct: 44 ITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIE----RED 99
Query: 218 QIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ A F D + G IT + L+ E+ G
Sbjct: 100 HL----FAAFTYFDKDGSGYITPDELQQACEEFG 129
Score = 32.9 bits (76), Expect = 0.20
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 198 ELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ + + + E SEE+I L F D++ G IT+E LK L++ G
Sbjct: 8 KFKKMALRVIAE---SLSEEEIAGLKEM-FNMIDADKSGQITFEELKAGLKRVG 57
Score = 32.9 bits (76), Expect = 0.23
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 132 EWLEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRV 185
E++ + ++ F IT +E A +F G D +I+ L R
Sbjct: 84 EFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEF-GVE-DVRIEELMRD 141
Query: 186 YDLDGDGLIQHKELQHVMR 204
D D DG I + E +M+
Sbjct: 142 VDQDNDGRIDYNEFVAMMQ 160
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 60.7 bits (148), Expect = 7e-11
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAM-HQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I EF+ M + + ++I FR++D D G I K+L+ V + E G +E
Sbjct: 81 IDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAK----ELGENLTE 136
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++ + +AD + I +
Sbjct: 137 EELQ----EMIAEADRNDDNEIDED 157
Score = 48.0 bits (115), Expect = 2e-06
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
I+ F ++D DG G I KEL+ MRA G + +E+I + + D + G I
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRAL----GFEPKKEEIK----KMISEIDKDGSGTI 81
Query: 239 TYE 241
+E
Sbjct: 82 DFE 84
Score = 40.3 bits (95), Expect = 8e-04
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I E AM G P + IK + D DG G I +E +M A M E S
Sbjct: 45 IDAKELKVAMRAL-GFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERD---SR 100
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E+I + F D +N G IT + L+ ++ G ENL+
Sbjct: 101 EEI----LKAFRLFDDDNSGTITIKDLRRVAKELG---ENLT 135
Score = 29.1 bits (66), Expect = 4.3
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
IT + + +++++ + D + D I E +M+
Sbjct: 118 ITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164
Score = 28.7 bits (65), Expect = 5.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLK 244
+EEQ + A F+ D++ G I + LK
Sbjct: 21 GLTEEQKQEIREA-FDLFDTDGSGTIDAKELK 51
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 60.2 bits (147), Expect = 7e-11
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFS 215
F + + + FR D +G+G IQ EL+ ++ G +
Sbjct: 55 FDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNL----GDALT 110
Query: 216 EEQIDHLTMALFEDADSENRGAITYE 241
+++ L ++ GAI YE
Sbjct: 111 SSEVE----ELMKEVSVSGDGAINYE 132
Score = 40.6 bits (96), Expect = 4e-04
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHL 222
F+++D D DG + +EL +R+ G + +++ +
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSL----GKNPTNAELNTI 46
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 58.8 bits (143), Expect = 7e-11
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
F + +S DD IK F V D D G I+ EL+ ++ ++ +
Sbjct: 28 KAFFAKVGL-TAKSADD-IKKAFFVIDQDKSGFIEEDELKLFLQV-FSAGARALTDAETK 84
Query: 221 HLTMALFEDADSENRGAITYE 241
A + DS+ GAI +
Sbjct: 85 ----AFLKAGDSDGDGAIGVD 101
Score = 35.7 bits (83), Expect = 0.010
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 170 FAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
F+G D + + + +K + + S + I F
Sbjct: 3 FSGILADADVAAALK--ACEAADSFNYKAFFAKVGLTAK------SADDI----KKAFFV 50
Query: 230 ADSENRGAITYESLKNQLEKHGGLLENLS 258
D + G I + LK L+ L+
Sbjct: 51 IDQDKSGFIEEDELKLFLQVFSAGARALT 79
Score = 35.3 bits (82), Expect = 0.016
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 129 GNLEWLEQLFRQTVGDEKEICRDDFKKIL----------ITKNEFIDAMHQFA--GQSPD 176
+ + F VG + DD KK I ++E + F+ ++
Sbjct: 23 DSFNYKA--FFAKVGLTAKS-ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALT 79
Query: 177 DK-IKFLFRVYDLDGDGLIQHKELQHVMRA 205
D K + D DGDG I E +++A
Sbjct: 80 DAETKAFLKAGDSDGDGAIGVDEWAALVKA 109
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 59.8 bits (146), Expect = 8e-11
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 161 NEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
EF+ M + + +D ++ FR +D +G G I LQ + G + +
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALL----NLGDRLKPHEF 117
Query: 220 DHLTMALFEDADSENRGAITYE 241
++E G I Y+
Sbjct: 118 A----EFLGITETEK-GQIRYD 134
Score = 48.2 bits (116), Expect = 7e-07
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D + G I + LQ V++ G++ + +F +AD+ G I
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQF----GVRVEPAAFN----EMFNEADATGNGKI 59
Query: 239 TYE 241
+
Sbjct: 60 QFP 62
Score = 40.9 bits (97), Expect = 3e-04
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
ITK + QF G + +F D G+G IQ E +M M++ SE
Sbjct: 23 ITKEGLQTVLKQF-GVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTT---SE 78
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+ + F D E G I +L++ L G + L
Sbjct: 79 DIL----RQAFRTFDPEGTGYIPKAALQDALLNLG---DRLK 113
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 61.1 bits (149), Expect = 9e-11
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EFI A ++ + F +D DG G I E+Q + + G+ + ID
Sbjct: 66 GEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACK----DFGL--DDIHID 119
Query: 221 HLTMALFEDADSENRGAITYE 241
+ ++ D +N G I Y
Sbjct: 120 ----DMIKEIDQDNDGQIDYG 136
Score = 49.9 bits (120), Expect = 5e-07
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+K LF++ D D G I EL+ ++ G + E +I L + AD + G I
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRV----GSELMESEIK----DLMDAADIDKSGTI 63
Query: 239 TYE 241
Y
Sbjct: 64 DYG 66
Score = 39.9 bits (94), Expect = 0.001
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
IT +E D + + G + IK L D+D G I + E + E
Sbjct: 27 ITFDELKDGLKRV-GSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLE----RE 81
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
E + ++ F D + G IT + ++ + G
Sbjct: 82 ENL----VSAFSYFDKDGSGYITLDEIQQACKDFG 112
Score = 35.7 bits (83), Expect = 0.035
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 132 EWLEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRV 185
E++ + +E F IT +E A F G D I + +
Sbjct: 67 EFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDF-GLD-DIHIDDMIKE 124
Query: 186 YDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFE 228
D D DG I + E +MR G + T+ L +
Sbjct: 125 IDQDNDGQIDYGEFAAMMRKRKGNGG---IGRRTMRKTLNLRD 164
Score = 33.0 bits (76), Expect = 0.22
Identities = 5/57 (8%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 147 EICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVM 203
+I +F ++ + + ++ + D + +I+ H
Sbjct: 132 QIDYGEFAAMMRKRKGNGGIGRR--TMRKTLNLRDALGLVDNGSNQVIEGYFKHHHH 186
Score = 31.8 bits (73), Expect = 0.50
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ SEE+I L F+ D++N G IT++ LK+ L++ G
Sbjct: 3 RLSEEEIGGLKEL-FKMIDTDNSGTITFDELKDGLKRVG 40
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 59.5 bits (145), Expect = 1e-10
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 146 KEICRDDFKKILITKNEFIDAMHQFAG---QSPDDKIKFLFRVYDLDGDGLIQHKELQHV 202
D+ K + F+ + A Q + FRV+D +G+G + EL+HV
Sbjct: 53 GNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHV 112
Query: 203 MRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
+ G + +EE+++ + +A ED++ G I YE
Sbjct: 113 LTTL----GEKMTEEEVETV-LAGHEDSN----GCINYE 142
Score = 48.0 bits (115), Expect = 1e-06
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 167 MHQFAGQSPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTM 224
M +F + D K F ++D GDG I + + VMRA G + ++ L +
Sbjct: 1 MIEF---NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRAL----GQNPTNAEV--LKV 51
Query: 225 ALFEDADSENRGAITYE 241
+D + +E
Sbjct: 52 LGNPKSDELKSRRVDFE 68
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 59.5 bits (145), Expect = 1e-10
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 158 ITKNEFIDAMHQFAGQ-----SPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGM 212
I + F +F G+ +++ FR+YD +G+G I ++ ++ E
Sbjct: 67 IDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILA----ELDE 122
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYE 241
S E +D A+ ++ D++ G + +E
Sbjct: 123 TLSSEDLD----AMIDEIDADGSGTVDFE 147
Score = 45.2 bits (108), Expect = 1e-05
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 179 IKFLFRVYD-LDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGA 237
++ FR ++ +G G + ++ ++ G+Q ++ I L ++ D G
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVL----GIQQTKSTIR----QLIDEFDPFGNGD 66
Query: 238 ITYE 241
I ++
Sbjct: 67 IDFD 70
Score = 41.8 bits (99), Expect = 2e-04
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
++ ++ + G I+ L +D G+G I + + + E
Sbjct: 31 VSTDQIGIILEVL-GIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQM 89
Query: 217 EQIDHLTMA--LFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+ L A L+ D E G I+ + ++ L + E LS
Sbjct: 90 Q--QELREAFRLY---DKEGNGYISTDVMREILAELD---ETLS 125
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I+ + + + + + + + D DG G + +E VM
Sbjct: 108 ISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 60.7 bits (148), Expect = 1e-10
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
+F+ A + F+ +D+DG+G I +EL+ + ++ ++ ID
Sbjct: 113 TDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGR--DDIENPLIDKAID 170
Query: 221 HLTMALFEDADSENRGAITYE 241
+L ++ D G I +
Sbjct: 171 ----SLLQEVDLNGDGEIDFH 187
Score = 49.1 bits (118), Expect = 1e-06
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 166 AMHQFAGQSPDDKI---KFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHL 222
A+ A D +I + +F D+D G + +E+ ++ G Q I
Sbjct: 43 ALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI----GYQKIPPDIH-- 96
Query: 223 TMALFEDADSENRGAITYE 241
+ D DS G I Y
Sbjct: 97 --QVLRDIDSNASGQIHYT 113
Score = 43.0 bits (102), Expect = 1e-04
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
E R+ F + ++ E +D + + Q I + R D + G I +
Sbjct: 54 VEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT 113
Query: 198 ELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENL 257
+ +E + F+ D + G I+ E LK + + L
Sbjct: 114 DFLAATIDKQTYL----KKEVC----LIPFKFFDIDGNGKISVEELKRIFGRD-DIENPL 164
Query: 258 S 258
Sbjct: 165 I 165
Score = 31.8 bits (73), Expect = 0.57
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFA--GQSPDDKIKFLFRVYDLDGDGLIQ 195
+KE+C FK I+ E + D I L + DL+GDG I
Sbjct: 126 LKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEID 185
Query: 196 HKELQHVMR 204
E +M
Sbjct: 186 FHEFMLMMS 194
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 58.9 bits (143), Expect = 1e-10
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ + M + + ++ F + LI + L+ E S+
Sbjct: 20 TKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEG---MSK 76
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E + + D + GA+
Sbjct: 77 EDAQ----GMVREGDLDGDGALNQT 97
Score = 38.9 bits (91), Expect = 0.001
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 186 YDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKN 245
+++++ VM M+ ++ F R IT ESL+
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKMDVEE---FVSEL----CKGFSLLADPERHLITAESLRR 64
Query: 246 QLEKHGGLLENLS 258
G E +S
Sbjct: 65 NSGILGI--EGMS 75
Score = 36.5 bits (85), Expect = 0.009
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 143 GDEKEICR-----DDFKKILITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQH 196
E+C+ D ++ LIT + + + + R DLDGDG +
Sbjct: 37 EFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQ 96
Query: 197 KELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
E +M E E+ L AL ++ + N
Sbjct: 97 TEFCVLMVRLSPE----MMEDAETWLEKALTQELCNHN 130
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 60.2 bits (146), Expect = 2e-10
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-----------IKFLFRVYDLDGDGLIQHKELQHVMRAC 206
+I+ + A + LF + D D +G I E + +A
Sbjct: 79 TDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA 138
Query: 207 MEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
G+ S E + F D + G + +
Sbjct: 139 ----GIIQSSEDCE----ETFRVCDIDESGQLDVD 165
Score = 44.0 bits (104), Expect = 6e-05
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 172 GQSPD--DKIKFLFRVYDLDGDGLIQHKELQHVM-RACMEENGMQFSEEQIDHLTMALFE 228
+P + K +F D++ +G I E+ + + G + + + F
Sbjct: 9 FDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFF 68
Query: 229 D-ADSENRGAITYE 241
A + +
Sbjct: 69 GGAGMKYGVETDWP 82
Score = 37.5 bits (87), Expect = 0.009
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
IT +E+ + + FRV D+D G + E+
Sbjct: 126 ITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
Score = 34.0 bits (78), Expect = 0.11
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 16/114 (14%)
Query: 158 ITKNEFIDAMHQFA----GQSP-DDKIKFLFRVYDLDGDGLIQHKELQ-----HVMRACM 207
I+ +E + G +P K G G+ E +
Sbjct: 33 ISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLA 92
Query: 208 EENGMQFS---EEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+ +++ I ALF+ D + GAIT + K + G S
Sbjct: 93 TDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAG---IIQS 143
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 59.1 bits (144), Expect = 2e-10
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK---IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF 214
+ +F+ +++ G F+V+D D G+I EL++V+ + G +
Sbjct: 54 VDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSL----GEKL 109
Query: 215 SEEQIDHLTMALFEDADSENRGAITYE 241
S E++D L + ++ G + Y
Sbjct: 110 SNEEMD----ELLKGVPVKD-GMVNYH 131
Score = 44.8 bits (107), Expect = 1e-05
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D G G I + ++RAC G + +I + +S +
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRAC----GQNPTLAEI--------TEIESTLPAEV 54
Query: 239 TYE 241
E
Sbjct: 55 DME 57
Score = 31.3 bits (72), Expect = 0.54
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I K D + GQ+P +I + + + ++ V+ + M
Sbjct: 22 IPKTSIGDLLRAC-GQNPTLAEITEI----ESTLPAEVDMEQFLQVLNRPNGFD-MPGDP 75
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E+ + F+ D + G I L+ L G E LS
Sbjct: 76 EEF----VKGFQVFDKDATGMIGVGELRYVLTSLG---EKLS 110
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 60.1 bits (146), Expect = 2e-10
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-----------IKFLFRVYDLDGDGLIQHKELQHVMRAC 206
I +F+D Q A +F ++D DG G I E + +
Sbjct: 83 IAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK-- 140
Query: 207 MEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
+G+ S+E + A F D +N G + +
Sbjct: 141 --ISGISPSQEDCE----ATFRHCDLDNAGDLDVD 169
Score = 40.5 bits (95), Expect = 8e-04
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQH-----VMRACMEENGMQFSEEQIDHLTMALFEDA- 230
+ K +F D++G+G I E+ + + + + + F
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKL----EATPEQTKRHQVCVEAFFRGC 75
Query: 231 DSENRGAITYE 241
E I +
Sbjct: 76 GMEYGKEIAFP 86
Score = 37.8 bits (88), Expect = 0.006
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE 209
IT +E+ + + FR DLD G + E+
Sbjct: 130 ITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYT 181
Score = 32.0 bits (73), Expect = 0.48
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 158 ITKNEFIDAMHQFA----GQSP-DDKIKFLFRVYDLDGDGLIQHK-----ELQHVMRACM 207
IT +E + +P K + G G+ K + +
Sbjct: 37 ITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLA 96
Query: 208 EENGMQFSEEQIDHLTMAL---FEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+++ + + F+ D + G IT + K + G + S
Sbjct: 97 TSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG---ISPS 147
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 58.0 bits (141), Expect = 2e-10
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 161 NEFIDAM-HQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
F + + D ++K +F + D D G I+ +EL+ V++ +G ++ +
Sbjct: 27 KRFFHLVGLK---GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG-FSAHGRDLNDTET 82
Query: 220 DHLTMALFEDADSENRGAITYE 241
AL DS++ G I +
Sbjct: 83 K----ALLAAGDSDHDGKIGAD 100
Score = 31.4 bits (72), Expect = 0.30
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQ 246
G +K H++ + ++ Q+ +FE D + G I E LK
Sbjct: 17 AFKDPGTFDYKRFFHLVGLKGK------TDAQV----KEVFEILDKDQSGFIEEEELKGV 66
Query: 247 LEKHGGLLENLS 258
L+ +L+
Sbjct: 67 LKGFSAHGRDLN 78
Score = 31.0 bits (71), Expect = 0.40
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 158 ITKNEFIDAMHQFA--GQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMR 204
I + E + F+ G+ +D K L D D DG I E ++
Sbjct: 58 IEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 59.1 bits (144), Expect = 2e-10
Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ F+ +G ++ I+ F ++D + + ++ ++ G F++
Sbjct: 67 LNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLE----NMGDNFNK 122
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
+++ F++A E G Y
Sbjct: 123 DEMR----MTFKEAPVEG-GKFDYV 142
Score = 40.2 bits (95), Expect = 6e-04
Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+K F + D+D DG + ++++ + G ++++ A+ ++A G +
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQL----GRAPDDKELT----AMLKEAP----GPL 67
Query: 239 TYE 241
+
Sbjct: 68 NFT 70
Score = 29.4 bits (67), Expect = 2.9
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG 211
+ D + D+++ F+ ++G G + + +++ EE
Sbjct: 104 LNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYVKFTAMIKGSGEEEA 156
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 58.6 bits (143), Expect = 2e-10
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 158 ITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I +EF+ M + + + ++ F+V+D +GDGLI EL+HV+ G + ++
Sbjct: 64 IEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLT----SIGEKLTD 119
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
++D + + + G I +
Sbjct: 120 AEVD----EMLREVSDGS-GEINIK 139
Score = 47.8 bits (115), Expect = 1e-06
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D D G I EL VMR+ G+ SE ++ L + D + AI
Sbjct: 13 FKEAFALFDKDNSGSISASELATVMRSL----GLSPSEAEVA----DLMNEIDVDGNHAI 64
Query: 239 TYE 241
+
Sbjct: 65 EFS 67
Score = 40.9 bits (97), Expect = 3e-04
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I+ +E M G SP + + L D+DG+ I+ E +M ++ N SE
Sbjct: 28 ISASELATVMRSL-GLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCND---SE 83
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+++ + F+ D G I+ LK+ L G E L+
Sbjct: 84 QEL----LEAFKVFDKNGDGLISAAELKHVLTSIG---EKLT 118
Score = 29.4 bits (67), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 213 QFSEEQIDHLTMA--LFEDADSENRGAITYESLK 244
+EEQI A LF D +N G+I+ L
Sbjct: 4 NLTEEQIAEFKEAFALF---DKDNSGSISASELA 34
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 61.0 bits (148), Expect = 2e-10
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 148 ICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACM 207
I + +L T+ F+ +S ++ +R YD D G I+ +EL++ ++ +
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQLKSCEE-FMKTWRKYDTDHSGFIETEELKNFLKDLL 133
Query: 208 EENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
E+ + ++ T + + DS N G +
Sbjct: 134 EKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Score = 57.6 bits (139), Expect = 3e-09
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 147 EICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRAC 206
++ + ++L + F+ + + F +YD DG+G I EL +++
Sbjct: 163 KLELTEMARLLPVQENFLLKFQG--IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDL 220
Query: 207 MEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLK 244
E+N + I + + G + L
Sbjct: 221 CEKNKQELDINNISTYKKNI---MALSDGGKLYRTDLA 255
Score = 48.3 bits (115), Expect = 4e-06
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 18/138 (13%)
Query: 139 RQTVGDEKEICRDDFKKI------LITKNEFIDAMHQF--------AGQSPDDKIKFLFR 184
Q + +E ++K I E + + + + +
Sbjct: 96 CQQLKSCEEF-MKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLK 154
Query: 185 VYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLK 244
++D + DG ++ E+ ++ + FE D + G I L
Sbjct: 155 LFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELD 214
Query: 245 NQLEKHGGLLENLSISID 262
L+ L E +D
Sbjct: 215 ALLKD---LCEKNKQELD 229
Score = 45.2 bits (107), Expect = 4e-05
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRA---CMEENGMQFSEEQIDHLTMALFEDADSE 233
+ ++ +D DG G ++ KELQ++++ ++ G++ S E +
Sbjct: 16 SQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKT-----FVDQYGQR 70
Query: 234 NRGAITYESLKNQLEKHGGLL 254
+ G I L + L L
Sbjct: 71 DDGKIGIVELAHVLPTEENFL 91
Score = 42.2 bits (99), Expect = 4e-04
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 28/139 (20%)
Query: 145 EKEICRDDFKKI----------LITKNEFIDAMHQF------AGQSPDDKIKFLFRVYDL 188
I F +I + E + + + AG ++K Y
Sbjct: 10 SSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQ 69
Query: 189 DGDGLIQHKELQHVMRACMEENGM-----QFSEEQIDHLTMALFEDADSENRGAITYESL 243
DG I EL HV+ + S E+ M + D+++ G I E L
Sbjct: 70 RDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEF----MKTWRKYDTDHSGFIETEEL 125
Query: 244 KNQLEKHGGLLENLSISID 262
KN L+ LLE + ++D
Sbjct: 126 KNFLKD---LLEKANKTVD 141
Score = 33.7 bits (77), Expect = 0.21
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKI-----KFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
I +NE + ++ + + + L G + +L ++ +N
Sbjct: 208 IDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL--SAGDN 263
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair,
RAD9, DNA binding protein; HET: DNA; 2.40A {Homo
sapiens} PDB: 2xnk_A* 2xnh_A*
Length = 298
Score = 61.3 bits (148), Expect = 3e-10
Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 54/163 (33%)
Query: 485 DDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQT---------------------- 522
+ SVTH++ A K + K ++ W+K
Sbjct: 140 NVSVTHLI--AGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINMEDFKC 197
Query: 523 ----------------------KLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGS 560
+L+ G Y + + THL+ G
Sbjct: 198 PIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNEC--------THLIVQEPKGQ 249
Query: 561 KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQN 603
KY A +W V +W + G E Y T +
Sbjct: 250 KYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRPEALE 292
Score = 39.7 bits (92), Expect = 0.003
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 12/98 (12%)
Query: 496 FTPTFHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCP 555
+ + +S E K Q++G + THL+
Sbjct: 102 YNMVMSDVTISCTSLEKEKREEV---HKYVQMMGGRVYRDLNVS---------VTHLIAG 149
Query: 556 TCSGSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQY 593
KY A P + W+ + +Y
Sbjct: 150 EVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRY 187
Score = 34.7 bits (79), Expect = 0.094
Identities = 10/88 (11%), Positives = 27/88 (30%)
Query: 506 CLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGSKYNAA 565
+ + + Y + + + K + + +C SG ++
Sbjct: 12 KFLKSSDNSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHL 71
Query: 566 LKWGFPSVNKKWLLECARTGKRVSEQQY 593
K G V + ++ C + V ++
Sbjct: 72 KKLGCRIVGPQVVIFCMHHQRCVPRAEH 99
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 59.4 bits (144), Expect = 3e-10
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 25/115 (21%)
Query: 144 DEKEICRDDFKKIL----------ITKNEFIDAMHQFAGQSPDDK-------IKFLFRVY 186
++ E R +F ++ I+ E + ++ ++
Sbjct: 52 EKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCI 111
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
D D DG + E + ++A G ++++ F D G I+ +
Sbjct: 112 DTDKDGYVSLPEFKAFLQA----VGPDLTDDKAI----TCFNTLDFNKNGQISRD 158
Score = 50.5 bits (121), Expect = 3e-07
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE-EQIDHLTMALFEDADSENR 235
K+K + D+ GDG I ++ + + + + + E+ + + +
Sbjct: 14 RKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPG 73
Query: 236 GAITYE 241
I+ E
Sbjct: 74 VRISVE 79
Score = 42.0 bits (99), Expect = 3e-04
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
++ EF + DDK F D + +G I E +
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVN 165
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 58.7 bits (143), Expect = 3e-10
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 158 ITKNEFIDAMH-QFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ F+ + +G P+D ++ F ++D DG G I L+ ++ G FS+
Sbjct: 65 LNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLE----NMGDNFSK 120
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E+I +++DA +N Y
Sbjct: 121 EEIK----NVWKDAPLKN-KQFNYN 140
Score = 40.6 bits (96), Expect = 4e-04
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
F + D D DG I ++L+ + + G +++++ A+ ++ G + +
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSL----GRVPPDDELN----AMLKECP----GQLNFT 68
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 58.7 bits (143), Expect = 3e-10
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 158 ITKNEFIDAMHQFAGQ----SPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQ 213
+ +EF+ M + ++++ LFR++D + DG I +EL+ +++A G
Sbjct: 72 VDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT----GET 127
Query: 214 FSEEQIDHLTMALFEDADSENRGAITYE 241
+E+ I+ L +D D N G I Y+
Sbjct: 128 ITEDDIE----ELMKDGDKNNDGRIDYD 151
Score = 44.5 bits (106), Expect = 2e-05
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I+ E M GQ+P + ++ + D DG G + E +M M+++ SE
Sbjct: 36 ISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E++ LF D G I E LK L+ G E ++
Sbjct: 95 EEL----SDLFRMFDKNADGYIDLEELKIMLQATG---ETIT 129
Score = 43.3 bits (103), Expect = 7e-05
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 179 IKFLFRVYDLDG-DGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGA 237
K F ++ L DG I KEL VMR G + E++ + ++ D + G
Sbjct: 20 FKAAFDIFVLGAEDGSISTKELGKVMRML----GQNPTPEELQ----EMIDEVDEDGSGT 71
Query: 238 ITYE 241
+ ++
Sbjct: 72 VDFD 75
Score = 30.2 bits (69), Expect = 1.4
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I E + +D I+ L + D + DG I + E M+
Sbjct: 112 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 59.9 bits (145), Expect = 4e-10
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 162 EFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDH 221
EF++ ++ +F D G+ L+ +E + + E
Sbjct: 115 EFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWG---AKVEDPA- 170
Query: 222 LTMALFEDADSENRGAITYE 241
ALF++ D G++T++
Sbjct: 171 ---ALFKELDKNGTGSVTFD 187
Score = 41.0 bits (96), Expect = 8e-04
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDA----- 230
+ LF+ +D + G + + E+ C+E + ++ +T F+ +
Sbjct: 47 KQRRIELFKKFDKNETGKLCYDEVY---SGCLEVLKLDEFTSRVRDITKRAFDKSRTLGS 103
Query: 231 DSENRGAITYE 241
EN+G+ +
Sbjct: 104 KLENKGSEDFV 114
Score = 40.3 bits (94), Expect = 0.001
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 127 DKGNLEWLE----QLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQS-P 175
+KG+ +++E +L + D E+ F +I L+ + EF A+ +
Sbjct: 107 NKGSEDFVEFLEFRLMLCYIYDFFEL-TVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAK 165
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACM---EENGMQFSEEQIDH 221
+ LF+ D +G G + E A + + E ++H
Sbjct: 166 VEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPDNVPESALEH 214
Score = 30.2 bits (68), Expect = 1.9
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQ 246
D DG KE +R + + + E + LF+ D G + Y+ + +
Sbjct: 18 DKDGKKAKDRKEAWERIRQAIPR---EKTAEAKQRR-IELFKKFDKNETGKLCYDEVYSG 73
Query: 247 LEKHGGLLE 255
+ L E
Sbjct: 74 CLEVLKLDE 82
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 56.9 bits (138), Expect = 4e-10
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ +F + +S +K +FR+ D D G I+ EL++ ++ E +
Sbjct: 24 FSPKKFFQISG-MSKKSSSQ-LKEIFRILDNDQSGFIEEDELKYFLQR-FESGARVLTAS 80
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
+ AD + G I E
Sbjct: 81 ETK----TFLAAADHDGDGKIGAE 100
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 184 RVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESL 243
+ D K+ + S++ L F D++ G I + L
Sbjct: 14 ALRDCQAPDSFSPKKFFQISG---------MSKKSSSQLKEI-FRILDNDQSGFIEEDEL 63
Query: 244 KNQLEKHGGLLENLS 258
K L++ L+
Sbjct: 64 KYFLQRFESGARVLT 78
Score = 34.9 bits (81), Expect = 0.018
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 138 FRQTVG-DEKEICRDDFKKI----------LITKNEFIDAMHQF---AGQSPDDKIKFLF 183
F Q G +K K+I I ++E + +F A + K
Sbjct: 29 FFQISGMSKKSS--SQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFL 86
Query: 184 RVYDLDGDGLIQHKELQHVMRA 205
D DGDG I +E Q ++++
Sbjct: 87 AAADHDGDGKIGAEEFQEMVQS 108
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 59.4 bits (144), Expect = 4e-10
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 21/95 (22%)
Query: 158 ITKNEFIDAMHQFAGQ-----------SPDDKIKFLFRVYDLDGDGLIQHKELQHVMRAC 206
+ + ++++A FA + V D DGDG + EL+ +M+A
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKA- 156
Query: 207 MEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
+E FE AD++ G +
Sbjct: 157 -----FDVPQEAAY----TFFEKADTDKSGKLERT 182
Score = 47.9 bits (114), Expect = 3e-06
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE-EQIDHLTMALFEDADSENR 235
++ F +DLD DG ++ E+ + + + E++ F E
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPV 95
Query: 236 GAITYE 241
+ E
Sbjct: 96 NGLLRE 101
Score = 46.0 bits (109), Expect = 1e-05
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 158 ITKNEFIDAMH---QFAGQSPD------DKIKFLFRVYDLDGDGLIQHKELQHVMRACME 208
+ +E + Q + + D ++ F ++ + ++ R E
Sbjct: 53 MEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAE 112
Query: 209 ENGMQFSEEQ---IDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
+ + I L+ + ++ D + G + + LK ++ E +
Sbjct: 113 AERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFE 169
Score = 37.9 bits (88), Expect = 0.006
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
+ +E M F + F D D G ++ EL H+ R
Sbjct: 145 VDVDELKTMMKAF-DVPQEA-AYTFFEKADTDKSGKLERTELVHLFR 189
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 109
Score = 56.8 bits (137), Expect = 4e-10
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 498 PTFHKLYACLS--SKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCP 555
P F S ++E +++++ G Y +R THL+
Sbjct: 11 PPFQDCILSFLGFSDEEKHSME-----EMTEMQGGSYLPVGDER---------CTHLIVE 56
Query: 556 TCSGSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQNV 604
+ V ++W + R E YL ++
Sbjct: 57 ENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAGETMYLYEKANTPESG 105
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 58.6 bits (142), Expect = 5e-10
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 15/115 (13%)
Query: 132 EWLEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDK-----IKFLFRVY 186
E + L G I + FI++M + + FR
Sbjct: 44 EHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAV 103
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
D + D I E + + A F+ D+ N G ++ E
Sbjct: 104 DTNEDNNISRDEYGIFFGM------LGLDKTMAP----ASFDAIDTNNDGLLSLE 148
Score = 46.6 bits (111), Expect = 6e-06
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 178 KIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE-----EQIDHLTMALFEDADS 232
K+K F D D DG I + + + +E+ M+ + + +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA- 65
Query: 233 ENRGAITYE 241
I
Sbjct: 66 -GGKGIDET 73
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 14/117 (11%)
Query: 158 ITKNEFIDAMHQFA--GQSPDDKIKFLFRVY---------DLDGDGLIQHKELQHVMRAC 206
IT+ +F +FA + + K L + G I + M+
Sbjct: 23 ITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEM 82
Query: 207 MEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDR 263
++ + ++ F D+ I+ + G S D
Sbjct: 83 VKNPEA---KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDA 136
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 13/84 (15%)
Query: 132 EWLEQLFRQTVGDE-----KEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIK 180
++ + E + F+ + I+++E+
Sbjct: 74 TFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML--GLDKTMAP 131
Query: 181 FLFRVYDLDGDGLIQHKELQHVMR 204
F D + DGL+ +E
Sbjct: 132 ASFDAIDTNNDGLLSLEEFVIAGS 155
Score = 31.2 bits (71), Expect = 0.83
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 134 LEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLF 183
F +G +K + F I L++ EF+ A F D K +
Sbjct: 116 YGIFFG-MLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFMNDGDSTNKVFW 170
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 57.6 bits (140), Expect = 5e-10
Identities = 11/97 (11%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 146 KEICRDDFKKILITKNEFIDAMH-QFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
K+I + T ++++ + + +++ +F +D + G + ++++++
Sbjct: 54 KKIKELYGDNL--TYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILT 111
Query: 205 ACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
G ++++ SE I Y+
Sbjct: 112 TW----GDALTDQEAI----DALNAFSSE--DNIDYK 138
Score = 41.4 bits (98), Expect = 2e-04
Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 12/65 (18%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
D+ + G I + R G+ S +
Sbjct: 15 DESDVRIYFNEKSSGGKISIDNASYNARKL----GLAPSSIDE--------KKIKELYGD 62
Query: 237 AITYE 241
+TYE
Sbjct: 63 NLTYE 67
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 57.5 bits (140), Expect = 6e-10
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 146 KEICRDDFKKILITKNEFIDAMHQFAG---QSPDDKIKFLFRVYDLDGDGLIQHKELQHV 202
+++ IT EF+ + A Q + RV+D +G+G + EL+HV
Sbjct: 51 GNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHV 110
Query: 203 MRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
+ G + +EE+++ L + + N G I YE
Sbjct: 111 LATL----GEKMTEEEVE----ELMKGQEDSN-GCINYE 140
Score = 47.5 bits (114), Expect = 2e-06
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D GD I ++ + RA G + +I+ + + N AI
Sbjct: 10 FKEAFLLFDRTGDAKITASQVGDIARAL----GQNPTNAEINKILGNP--SKEEMNAAAI 63
Query: 239 TYE 241
T+E
Sbjct: 64 TFE 66
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 57.6 bits (140), Expect = 6e-10
Identities = 12/90 (13%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 158 ITKNEFIDAMHQF------AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG 211
+T ++ + ++ + F+V+D + G + +L++++ G
Sbjct: 58 LTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGL----G 113
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYE 241
+ ++ ++D L + + ++ G I Y+
Sbjct: 114 EKLTDAEVD----ELLKGVEVDSNGEIDYK 139
Score = 47.2 bits (113), Expect = 3e-06
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
F ++D G G I L +RA G + + + + + D+ + ++T +
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAI----GYNPTNQLVQDI---INADSSLRDASSLTLD 61
Score = 36.8 bits (86), Expect = 0.009
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEEN--GMQ 213
I K+ D + G +P ++ + L + ++ ++ +E +
Sbjct: 21 IAKDSLGDYLRAI-GYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTK 79
Query: 214 FSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
E + F+ D E+ G ++ L+ L G E L+
Sbjct: 80 AKTEDF----VKAFQVFDKESTGKVSVGDLRYMLTGLG---EKLT 117
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 57.2 bits (139), Expect = 6e-10
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFL---FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
NEF GQ D L +++ D+DGDG + +E+ + + E
Sbjct: 56 NEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFK--------KHGIE 107
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
++ AD+ G IT E
Sbjct: 108 KVA----EQVMKADANGDGYITLE 127
Score = 48.7 bits (117), Expect = 5e-07
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
++ E + + + ++ +F+ D DG+G I E + ++
Sbjct: 17 VSYEEVKAFVSKK-RAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQD----LS 71
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ L + ++ D + G +T E + + +KHG
Sbjct: 72 DDKIGLKVL-YKLMDVDGDGKLTKEEVTSFFKKHG 105
Score = 48.3 bits (116), Expect = 7e-07
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 182 LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
LF+ D++GDG + ++E++ + +E+ + +F+ D++ G I
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKK----RAIKNEQLLQ----LIFKSIDADGNGEIDQN 56
Score = 34.8 bits (81), Expect = 0.036
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 131 LEWLEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFR 184
++ + Q + D+K + +K + +TK E + +K+
Sbjct: 59 AKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKH----GIEKVAEQVM 114
Query: 185 VYDLDGDGLIQHKELQHVM 203
D +GDG I +E
Sbjct: 115 KADANGDGYITLEEFLEFS 133
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 58.3 bits (141), Expect = 7e-10
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK---------IKFLFRVYDLDGDGLIQHKELQHVMRACME 208
+TK E++ + + + F+F V D GD +I E V +
Sbjct: 81 VTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMS--- 137
Query: 209 ENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
+ D A F+ + +T E
Sbjct: 138 ---YGIPKSDCD----AAFDTLSDGGKTMVTRE 163
Score = 46.0 bits (109), Expect = 1e-05
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 16/122 (13%)
Query: 158 ITKNEFIDAMHQFA---GQSPDDK------------IKFLFRVYDLDGDGLIQHKELQHV 202
I ++F A+ + D K L + D + D + +E +
Sbjct: 30 IEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKM 89
Query: 203 MRACM-EENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
C+ + E + +F+ D+ I +G + +
Sbjct: 90 WAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAF 149
Query: 262 DR 263
D
Sbjct: 150 DT 151
Score = 44.4 bits (105), Expect = 4e-05
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 177 DKIKFLFRV-YDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMA-------LFE 228
+KI +F YD + DG+I+ + + ++ + ++ + L +
Sbjct: 12 NKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRK 71
Query: 229 DADSENRGAITYE 241
AD +T E
Sbjct: 72 YADENEDEQVTKE 84
Score = 39.1 bits (91), Expect = 0.003
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
I K+E+ + P F G ++ + +
Sbjct: 126 IDKHEYSTVYMSYGI--PKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Score = 30.2 bits (68), Expect = 2.3
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 126 FDK---GNLEWLE-QLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQF-AGQS 174
D ++ E + G K C F + ++T+ F ++
Sbjct: 118 NDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSND 177
Query: 175 PDDKIKFLF 183
K LF
Sbjct: 178 RGAKGNHLF 186
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 54.4 bits (132), Expect = 9e-10
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K +F +D + DG + E + V A F++E I FE+ D + G +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAF----SPYFTQEDIV----KFFEEIDVDGNGEL 54
Query: 239 TYE 241
+
Sbjct: 55 NAD 57
Score = 36.7 bits (86), Expect = 0.002
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACM 207
++ +EF + F+ + I F D+DG+G + E + +
Sbjct: 18 LSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML 67
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 54.9 bits (133), Expect = 1e-09
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 175 PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
+++I F+V+D +GDG+I E + +M+ EE ++ +++ ++AD +
Sbjct: 6 DEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEP---LTDAEVE----EAMKEADEDG 58
Query: 235 RGAITYE 241
G I
Sbjct: 59 NGVIDIP 65
Score = 32.1 bits (74), Expect = 0.088
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 158 ITKNEFIDAMHQFAGQSP--DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE 209
I +EF M + G+ P D +++ + D DG+G+I E +++
Sbjct: 25 IDFDEFKFIMQKV-GEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKSKNA 77
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 57.6 bits (139), Expect = 1e-09
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 19/93 (20%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK---------IKFLFRVYDLDGDGLIQHKELQHVMRACME 208
++ E++ + I FLF+ D+ GDG++ +E Q+ +
Sbjct: 77 VSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKN--- 133
Query: 209 ENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
Q + A++ +
Sbjct: 134 ---FQLQCADVP----AVYNVITDGGKVTFDLN 159
Score = 44.1 bits (104), Expect = 5e-05
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 178 KIKFLFRV-YDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMA-------LFED 229
KIKF F D++ DG IQ + + +M E N S+ + + L
Sbjct: 9 KIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGR 68
Query: 230 ADSENRGAITYE 241
AD +++E
Sbjct: 69 ADINKDDVVSWE 80
Score = 38.7 bits (90), Expect = 0.003
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 6/122 (4%)
Query: 148 ICRDDFKKIL-----ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHV 202
I +DF+ ++ + K DA ++ S +D+ + L D++ D ++ +E +
Sbjct: 26 IQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAM 85
Query: 203 MRACM-EENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISI 261
+ + + LF+ D G + E +N + ++
Sbjct: 86 WEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVY 145
Query: 262 DR 263
+
Sbjct: 146 NV 147
Score = 36.1 bits (83), Expect = 0.026
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
+ EF + F Q + ++ V G + +
Sbjct: 122 VDLEEFQNYCKNF--QLQCADVPAVYNVITDGGKVTFDLNRYKELYY 166
Score = 29.5 bits (66), Expect = 2.9
Identities = 4/56 (7%), Positives = 12/56 (21%), Gaps = 7/56 (12%)
Query: 134 LEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLF 183
+ + + + I N + + ++ D L
Sbjct: 127 FQNYCK-NFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGNTLM 181
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 54.4 bits (132), Expect = 1e-09
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 173 QSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADS 232
++ + ++ FR +D DGDG I EL+ M G +E++D A+ +AD
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMA----GLGQPLPQEELD----AMIREADV 53
Query: 233 ENRGAITYE 241
+ G + YE
Sbjct: 54 DQDGRVNYE 62
Score = 29.8 bits (68), Expect = 0.60
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
IT +E AM P +++ + R D+D DG + ++E ++
Sbjct: 23 ITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLA 69
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 57.7 bits (140), Expect = 1e-09
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
+EF+ +++ F+ +D DG G I ++EL + + +E
Sbjct: 107 SEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFG------VTEVDDETWH 160
Query: 221 HLTMALFEDADSENRGAITYE 241
+ ++ D N G + +E
Sbjct: 161 ----QVLQECDKNNDGEVDFE 177
Score = 46.9 bits (112), Expect = 6e-06
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRA-------CMEENGMQFSEEQIDHLTMALFED 229
++ +FR D +GDG + KEL R + + E ++D + +
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD----HILQS 95
Query: 230 ADSENRGAITYE 241
D + G I Y
Sbjct: 96 VDFDRNGYIEYS 107
Score = 38.8 bits (91), Expect = 0.003
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 25/125 (20%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFA----------GQSP-DDKIKFLFRVY 186
+E + F+++ + + E I+ + S + ++ + +
Sbjct: 37 EETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSV 96
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQ 246
D D +G I++ E V S E++ +A F+ DS+ G IT E L
Sbjct: 97 DFDRNGYIEYSEFVTVCMDKQLLL----SRERL----LAAFQQFDSDGSGKITNEELGRL 148
Query: 247 LEKHG 251
Sbjct: 149 FGVTE 153
Score = 36.1 bits (84), Expect = 0.025
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 132 EWLEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRV 185
E++ + + +E F++ IT E + D+ + +
Sbjct: 108 EFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVT--EVDDETWHQVLQE 165
Query: 186 YDLDGDGLIQHKELQHVMR 204
D + DG + +E +M+
Sbjct: 166 CDKNNDGEVDFEEFVEMMQ 184
Score = 28.0 bits (63), Expect = 8.7
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
+ E+ LT F D+ G + + L K + +D
Sbjct: 35 TLEETKELTQI-FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLD 81
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 56.8 bits (138), Expect = 1e-09
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 158 ITKNEFIDAMHQFAGQSPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFS 215
+ EF+ A F+ +D +G G I EL+HV+ A G + S
Sbjct: 63 LPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTAL----GERLS 118
Query: 216 EEQIDHLTMALFEDADSE--NRGAITYE 241
+E +D + + D + G + YE
Sbjct: 119 DEDVD----EIIKLTDLQEDLEGNVKYE 142
Score = 41.0 bits (97), Expect = 4e-04
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 174 SPDDK--IKFLFRVYDL--DGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
S D+ +K +F ++D DG + +L V R G+ E + +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCL----GINPRNEDVFAV-----GG 54
Query: 230 ADSENRGAITYE 241
++ +E
Sbjct: 55 THKMGEKSLPFE 66
Score = 34.1 bits (79), Expect = 0.067
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ + D G +P ++ + + G+ + +E M+ Q +
Sbjct: 28 VDAFKLGDVCRCL-GINPRNEDVFAVGGT-HKMGEKSLPFEEFLPAYEGLMDCE--QGTF 83
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
M F+ D E +G I+ L++ L G E LS
Sbjct: 84 ADY----MEAFKTFDREGQGFISGAELRHVLTALG---ERLS 118
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 54.5 bits (132), Expect = 2e-09
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 175 PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
++++K F+V+D D +G I EL+HVM G + ++E+++ + ++AD +
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMI----NLGEKLTDEEVE----QMIKEADLDG 58
Query: 235 RGAITYE 241
G + YE
Sbjct: 59 DGQVNYE 65
Score = 36.0 bits (84), Expect = 0.006
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
D +E ++ FK I+ +E M + D++++ + + DLDGDG + ++
Sbjct: 6 DAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE 65
Query: 198 ELQHVMRACMEENGMQFSEE 217
E +M G
Sbjct: 66 EFVKMMMTVRGGGGGNGWSR 85
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 54.4 bits (131), Expect = 3e-09
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ + +H+ I F +D I +E RA ++E
Sbjct: 6 TADRDILARLHKAVTSHYHA-ITQEFENFDTMKTNTISREEF----RAICNRRVQILTDE 60
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
Q D L+ + +G + Y
Sbjct: 61 QFD----RLWNEMPVNAKGRLKYP 80
Score = 45.9 bits (109), Expect = 2e-06
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 134 LEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYD 187
+ + V +F+ I++ EF ++ D++ L+
Sbjct: 11 ILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMP 70
Query: 188 LDGDGLIQHKE 198
++ G +++ +
Sbjct: 71 VNAKGRLKYPD 81
Score = 29.8 bits (67), Expect = 1.2
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLL 254
+ + FE+ D+ I+ E + + +L
Sbjct: 16 HKAVTSHYHAI-TQEFENFDTMKTNTISREEFRAICNRRVQIL 57
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 59.1 bits (143), Expect = 3e-09
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 158 ITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
I EF+ M + + +++I+ FRV+D DG+G I EL+HVM G + ++
Sbjct: 365 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL----GEKLTD 420
Query: 217 EQIDHLTMALFEDADSENRGAITYE 241
E++D + +AD + G + YE
Sbjct: 421 EEVD----EMIREADIDGDGQVNYE 441
Score = 52.2 bits (125), Expect = 5e-07
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 144 DEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVM 203
+ K I + IL K E+ Q + K F ++D DGDG I KEL VM
Sbjct: 281 ELKGIDFKEDGNILGHKLEYNTRDQLTEEQIAE--FKEAFSLFDKDGDGTITTKELGTVM 338
Query: 204 RACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
R+ G +E ++ + + D++ G I +
Sbjct: 339 RSL----GQNPTEAELQD----MINEVDADGNGTIDFP 368
Score = 39.5 bits (92), Expect = 0.005
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 149 CRDDFKKILITKNEFIDAMHQFAGQSPDDK-IKFLFRVYDLDGDGLIQHKELQHVMRACM 207
D IT E M GQ+P + ++ + D DG+G I E +M M
Sbjct: 320 LFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM 378
Query: 208 EENGMQFSEEQI-DHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
++ SEE+I + +F D + G I+ L++ + G E L+
Sbjct: 379 KDTD---SEEEIREA--FRVF---DKDGNGYISAAELRHVMTNLG---EKLT 419
Score = 37.9 bits (88), Expect = 0.011
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 24/102 (23%)
Query: 168 HQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN----------------- 210
F P+ I+ ++ D E++ +
Sbjct: 239 DFFKSAMPEGYIQ-ERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHK 297
Query: 211 -----GMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQL 247
Q +EEQI A F D + G IT + L +
Sbjct: 298 LEYNTRDQLTEEQIAEFKEA-FSLFDKDGDGTITTKELGTVM 338
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 55.7 bits (135), Expect = 4e-09
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 158 ITKNEFIDAMHQFAG---QSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF 214
E + + + + D+ F+ +D +G GLI E+++V++ G +
Sbjct: 63 YKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKML----GERI 118
Query: 215 SEEQIDHLTMALFEDADSE--NRGAITYE 241
+E+Q + +F D G I YE
Sbjct: 119 TEDQCN----DIFTFCDIREDIDGNIKYE 143
Score = 41.0 bits (97), Expect = 3e-04
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 177 DKIKFLFRVYDL--DGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
++++ +F ++D DG + ++ ++R GM +E Q+
Sbjct: 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRCL----GMNPTEAQVHQHG-----GTKKMG 59
Query: 235 RGAITYE 241
A E
Sbjct: 60 EKAYKLE 66
Score = 32.6 bits (75), Expect = 0.22
Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ + D + G +P + ++ G+ + +E+ + ++ +
Sbjct: 28 VDAAKVGDLLRCL-GMNPTEAQVHQHGGT-KKMGEKAYKLEEILPIYEEMSSKDTGT-AA 84
Query: 217 EQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
++ M F+ D E +G I+ ++N L+ G E ++
Sbjct: 85 DEF----MEAFKTFDREGQGLISSAEIRNVLKMLG---ERIT 119
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 57.9 bits (140), Expect = 4e-09
Identities = 12/84 (14%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ +E++ ++ L+ D D G + +E+Q V+ + + + + +
Sbjct: 240 VGFSEYVHLGLC------LLVLRILYAFADFDKSGQLSKEEVQKVLE---DAHIPESARK 290
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
+ +H F D ++ +++Y+
Sbjct: 291 KFEH----QFSVVDVDDSKSLSYQ 310
Score = 56.0 bits (135), Expect = 2e-08
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
++ + + + FR D + +G + KE + G +
Sbjct: 175 MSYITLVAVA------NDLAALVADFRKIDTNSNGTLSRKEFREHFV----RLGFD-KKS 223
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
D ALF AD + + +
Sbjct: 224 VQD----ALFRYADEDESDDVGFS 243
Score = 46.3 bits (110), Expect = 3e-05
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 20/118 (16%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
++ I R F + + + ++A P+ +K LF + + D G + +
Sbjct: 119 EDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYI 178
Query: 198 ELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLE 255
L V + + A F D+ + G ++ + + + G +
Sbjct: 179 TLVAVA---NDLAALV-----------ADFRKIDTNSNGTLSRKEFREHFVRLGFDKK 222
Score = 38.3 bits (89), Expect = 0.009
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 158 ITKNEFIDAMHQF-AGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
++K E + +S K + F V D+D + ++E ++ ++
Sbjct: 270 LSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFHDD 323
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 56.1 bits (136), Expect = 4e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 161 NEFIDAM-HQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE-NGMQFSEEQ 218
EFI A + Q I FRV+D+D DG I EL H++ ++ N Q +
Sbjct: 107 TEFIAAALDR--KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 219 IDHLTMALFEDADSENRGAITYE 241
+ + D D N G I +
Sbjct: 165 VK----RMIRDVDKNNDGKIDFH 183
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
+ E + F + ITK + + + G L D DG G I +
Sbjct: 49 YDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKD-GLKLPYNFDLLLDQIDSDGSGKIDYT 107
Query: 198 ELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENL 257
E + A ++ + S++ I F D +N G IT L + L
Sbjct: 108 EF---IAAALDRKQL--SKKLI----YCAFRVFDVDNDGEITTAELAHILYNGNKKGNIT 158
Query: 258 SISIDRW 264
++R
Sbjct: 159 QRDVNRV 165
Score = 44.2 bits (105), Expect = 4e-05
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 166 AMHQFAGQSPDDKIKFL---FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHL 222
AM A QS D ++ L F V D DG G I ++L+ + +G++ D
Sbjct: 38 AMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEK----DGLKLPYN-FD-- 90
Query: 223 TMALFEDADSENRGAITYE 241
L + DS+ G I Y
Sbjct: 91 --LLLDQIDSDGSGKIDYT 107
Score = 35.7 bits (83), Expect = 0.029
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQF-----AGQSPDDKIKFLFRVYDLDGDG 192
K++ F+ IT E ++ Q +++K + R D + DG
Sbjct: 119 LSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDG 178
Query: 193 LIQHKELQHVMR 204
I E +M+
Sbjct: 179 KIDFHEFSEMMK 190
Score = 31.8 bits (73), Expect = 0.62
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLE 255
Q ++ ++ L F D + +G IT E LK LEK G L
Sbjct: 45 QSNDYDVEKLKST-FLVLDEDGKGYITKEQLKKGLEKDGLKLP 86
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 53.0 bits (128), Expect = 4e-09
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRA--CMEENGMQFSEEQIDHLTMALFEDADSEN 234
+++ F+ D +GDG + ELQ M + +E L + AD +
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASA----KLIKMADKNS 62
Query: 235 RGAITYE 241
G I+ E
Sbjct: 63 DGKISKE 69
Score = 31.8 bits (73), Expect = 0.14
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 13/77 (16%)
Query: 145 EKEICRDDFKKI------LITKNEFIDAMHQFAGQSP------DDKIKFLFRVYDLDGDG 192
+ E+ FKK+ +T E M + L ++ D + DG
Sbjct: 6 KAEL-EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDG 64
Query: 193 LIQHKELQHVMRACMEE 209
I +E + + +
Sbjct: 65 KISKEEFLNANAELLCQ 81
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 51.0 bits (123), Expect = 1e-08
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 150 RDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVM 203
FK+I ++ E + + + ++ +F+ D DG+G I E
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 204 RA 205
+
Sbjct: 63 GS 64
Score = 49.5 bits (119), Expect = 5e-08
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+ LF+ D++GDG + ++E++ + +E+ + +F+ D++ G I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKK----RAIKNEQLLQ----LIFKSIDADGNGEI 53
Query: 239 TYE 241
Sbjct: 54 DQN 56
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 54.6 bits (132), Expect = 1e-08
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
IT +EF D H ++ FR D GDG + E++ + +G Q SE+
Sbjct: 80 ITFDEFKDLHHF------ILSMREGFRKRDSSGDGRLDSNEVRAALL----SSGYQVSEQ 129
Query: 218 QIDHLTMALFEDADSENRGAITYE 241
AL D + RG++ ++
Sbjct: 130 TFQ----ALMRKFDRQRRGSLGFD 149
Score = 50.0 bits (120), Expect = 6e-07
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 166 AMHQFAGQSPDDK--IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLT 223
++ + + +D + FR D DG G I EL + + G+ FS + L
Sbjct: 14 GVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSS----AGVPFSLATTEKL- 68
Query: 224 MALFEDADSENRGAITYE 241
+ ++ D + G IT++
Sbjct: 69 LHMY---DKNHSGEITFD 83
Score = 38.0 bits (89), Expect = 0.005
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ NE A+ Q + + L R +D G + + +
Sbjct: 110 LDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI------------- 156
Query: 218 QIDHLTMALFEDADSENRGAIT--YE 241
+ + F D E G +T ++
Sbjct: 157 FVCRVRNV-FAFYDRERTGQVTFTFD 181
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 54.2 bits (131), Expect = 1e-08
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
+EF + +FR YD D G+I EL+ + G + S++ D
Sbjct: 64 SEFTGVWKYIT------DWQNVFRTYDRDNSGMIDKNELKQALSGF----GYRLSDQFHD 113
Query: 221 HLTMALFEDADSENRGAITYES 242
L D + RG I ++
Sbjct: 114 ----ILIRKFDRQGRGQIAFDD 131
Score = 43.0 bits (102), Expect = 9e-05
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENR 235
+ +F+ D D G+I ELQ + F+ + + +++F D EN+
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNG---TWTPFNPVTVRSI-ISMF---DRENK 58
Query: 236 GAITYE 241
+ +
Sbjct: 59 AGVNFS 64
Score = 34.5 bits (80), Expect = 0.055
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
I KNE A+ F + D L R +D G G I + ++ C+
Sbjct: 91 IDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF---IQGCI---------- 137
Query: 218 QIDHLTMALFEDADSENRGAIT 239
+ LT F D++ G I
Sbjct: 138 VLQRLTDI-FRRYDTDQDGWIQ 158
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 51.0 bits (123), Expect = 2e-08
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
D ++ +F+ +D +GDG I EL +R S +++ + + D++ G
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGST-----SADEVQ----RMMAEIDTDGDG 53
Query: 237 AITYE 241
I +
Sbjct: 54 FIDFN 58
Score = 37.9 bits (89), Expect = 8e-04
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE 209
I+ +E DA+ G + D+++ + D DGDG I E A
Sbjct: 20 ISLSELTDALRTL-GSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNANPGL 70
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 50.6 bits (122), Expect = 2e-08
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
IK F ++D + G I + EL+ MRA G + +I L + D E G I
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRAL----GFDVKKPEIL----ELMNEYDREGNGYI 60
Query: 239 TYE 241
++
Sbjct: 61 GFD 63
Score = 34.0 bits (79), Expect = 0.021
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
I +E AM G +I L YD +G+G I + +M ++
Sbjct: 24 IDYHELKVAMRAL-GFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIKNR 76
Score = 29.4 bits (67), Expect = 0.75
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 214 FSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
SEEQ + A F+ D+ G+I Y LK + G
Sbjct: 1 LSEEQKQEIKEA-FDLFDTNKTGSIDYHELKVAMRALG 37
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 53.5 bits (129), Expect = 3e-08
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EF+ +++ +K F D D DG I ++ ++ ID
Sbjct: 93 TEFMAGCYRWKNIE-STFLKAAFNKIDKDEDGYISKSDIVSLVH------DKVLDNNDID 145
Query: 221 HLTMALFEDADSENRGA--------ITYE 241
F S +G I+++
Sbjct: 146 ----NFFLSVHSIKKGIPREHIINKISFQ 170
Score = 47.7 bits (114), Expect = 3e-06
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
+ + + F K+ ++ E + G D I + + D++ G I +
Sbjct: 36 NHIKYINELFYKLDTNHNGSLSHREIYTVLASV-GIKKWD-INRILQALDINDRGNITYT 93
Query: 198 ELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
E M C + A F D + G I+ + + +
Sbjct: 94 EF---MAGCYRW--KNIESTFL----KAAFNKIDKDEDGYISKSDIVSLVHDKV 138
Score = 31.5 bits (72), Expect = 0.62
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 212 MQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ I ++ LF D+ + G++++ + L G
Sbjct: 31 LSVINNHIKYI-NELFYKLDTNHNGSLSHREIYTVLASVG 69
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 50.7 bits (122), Expect = 4e-08
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F ++D DG G I KEL VMR G ++E++D A+ E+ D + G I
Sbjct: 22 FKAAFDMFDADGGGDISTKELGTVMRML----GQNPTKEELD----AIIEEVDEDGSGTI 73
Query: 239 TYE 241
+E
Sbjct: 74 DFE 76
Score = 36.0 bits (84), Expect = 0.005
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENG 211
I+ E M GQ+P +++ + D DG G I +E +M M+E+
Sbjct: 37 ISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDA 90
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 52.8 bits (127), Expect = 4e-08
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMA-------LFE 228
D++K F +D DG+G ++ + + + E G ++ L A L +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 229 DADSENRGAITYE 241
+A + G++T E
Sbjct: 66 EAGVGSDGSLTEE 78
Score = 47.4 bits (113), Expect = 3e-06
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 15/121 (12%)
Query: 158 ITKNEFIDAMHQFA---GQSPDD------------KIKFLFRVYDLDGDGLIQHKELQHV 202
+ + +F A G+ +L + + DG + ++ V
Sbjct: 24 LERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRV 83
Query: 203 MRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISID 262
+ E G + + + D G I + L G + + +
Sbjct: 84 TENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFN 143
Query: 263 R 263
+
Sbjct: 144 Q 144
Score = 39.4 bits (92), Expect = 0.002
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I +EF + + F D +G+G + EL +R
Sbjct: 119 INADEFAAWLTAL--GMSKAEAAEAFNQVDTNGNGELSLDELLTAVRD 164
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 50.3 bits (121), Expect = 5e-08
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K F+++D D D + +EL VMRA G ++++I + +D D +N G
Sbjct: 16 YKEAFQLFDKDNDNKLTAEELGTVMRAL----GANPTKQKISE----IVKDYDKDNSGKF 67
Query: 239 TYE 241
E
Sbjct: 68 DQE 70
Score = 34.9 bits (81), Expect = 0.013
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
+T E M KI + + YD D G + +M +E
Sbjct: 31 LTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYGQEV 83
Score = 30.3 bits (69), Expect = 0.45
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 207 MEENGMQFSEEQIDHLTMA--LFEDADSENRGAITYESLKN 245
M E + E+ A LF D +N +T E L
Sbjct: 1 MSEQKKVLTAEEQQEYKEAFQLF---DKDNDNKLTAEELGT 38
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 50.0 bits (120), Expect = 5e-08
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRG 236
+++ +F D + G ++ +E + + ++ + A+F+ D++ G
Sbjct: 27 ARLRSVFAACDANRSGRLEREEFRALCTE------LRVRPADAE----AVFQRLDADRDG 76
Query: 237 AITYE 241
AIT++
Sbjct: 77 AITFQ 81
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 143 GDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQH 196
G+E R F + + EF + P D + +F+ D D DG I
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTEL-RVRPAD-AEAVFQRLDADRDGAITF 80
Query: 197 KELQHVMRACM 207
+E +
Sbjct: 81 QEFARGFLGSL 91
Score = 31.9 bits (73), Expect = 0.14
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 194 IQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+ H R + G E++ L ++F D+ G + E + +
Sbjct: 1 MHHHHHHSSGRENLYFQGADGDGEELARLR-SVFAACDANRSGRLEREEFRALCTELR 57
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 52.7 bits (127), Expect = 6e-08
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ +EF + + + + + R +D +G G + +E +R M S+
Sbjct: 54 LDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPM-------SQA 106
Query: 218 QIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENL 257
+ + A F D G +T + L+
Sbjct: 107 REAVIAAA-FAKLDRSGDGVVTVDDLRGVYSGRAHPKVRS 145
Score = 52.0 bits (125), Expect = 1e-07
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA---CMEENGMQFSEE 217
EF+ A+ Q+ + I F D GDG++ +L+ V +G +E
Sbjct: 93 EEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDE 152
Query: 218 QIDHLTMALFEDADSENR-GAITYE 241
+ ++ DS + G +T
Sbjct: 153 VLR----RFLDNFDSSEKDGQVTLA 173
Score = 51.2 bits (123), Expect = 2e-07
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+ FR D DG + E + + G+ + + + + D G +
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLAK----LGLVLDQAEAE----GVCRKWDRNGSGTL 90
Query: 239 TYE 241
E
Sbjct: 91 DLE 93
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 49.8 bits (120), Expect = 8e-08
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+K LF++ D D G I EL+ ++ G + E +I L + AD + G I
Sbjct: 25 LKELFKMIDTDNSGTITFDELKDGLKRV----GSELMESEIK----DLMDAADIDKSGTI 76
Query: 239 TYE 241
Y
Sbjct: 77 DYG 79
Score = 35.6 bits (83), Expect = 0.007
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 189 DGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLE 248
G I + M + SEE+I L F+ D++N G IT++ LK+ L+
Sbjct: 1 HSSGHIDDDD--KHMAE-------RLSEEEIGGLKEL-FKMIDTDNSGTITFDELKDGLK 50
Query: 249 KHG 251
+ G
Sbjct: 51 RVG 53
Score = 32.1 bits (74), Expect = 0.11
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHK 197
+E ++ FK I IT +E D + + + + +IK L D+D G I +
Sbjct: 20 EEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 79
Query: 198 ELQHVM 203
E
Sbjct: 80 EFIAAT 85
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 50.7 bits (121), Expect = 2e-07
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 162 EFIDAMHQFAGQSPDDKIKFL---FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQ 218
+F+D + K++ + +DL+G+G I L+ ++ G+ + +
Sbjct: 30 QFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKL----GVPKTHLE 85
Query: 219 IDHLTMALFEDADSENRGAITYE 241
+ L + S + +Y
Sbjct: 86 LK----RLIREVSSGSEETFSYS 104
Score = 36.8 bits (85), Expect = 0.008
Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 127 DKGNLEWLEQLFRQTVGDEKEICRDDFKKI------LITKNEFIDAMHQFAGQSPDDKIK 180
+K L+ + + + + E + + + I + + ++K
Sbjct: 28 NKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELK 87
Query: 181 FLFRVYDLDGDGLIQHKELQHVMRACMEE 209
L R + + + +M
Sbjct: 88 RLIREVSSGSEETFSYSDFLRMMLGKRSA 116
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 47.7 bits (114), Expect = 6e-07
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
K + +DL+G+G I L+ ++ G+ + ++ L + S +
Sbjct: 34 FKEKYMEFDLNGNGDIDIMSLKRMLEKL----GVPKTHLELK----KLIGEVSSGSGETF 85
Query: 239 TYE 241
+Y
Sbjct: 86 SYP 88
Score = 28.9 bits (65), Expect = 2.1
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 2/51 (3%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACM 207
I + + G ++K L + + +M
Sbjct: 49 IDIMSLKRMLEKL-GVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKR 98
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 46.9 bits (112), Expect = 8e-07
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
+ +F+ +D +GDG I EL ++ G + +++ + + D++ G I
Sbjct: 13 RERIFKRFDTNGDGKISSSELGDALKTL----G-SVTPDEVR----RMMAEIDTDGDGFI 63
Query: 239 TYESLKNQLEKHGGLLENL 257
+++ + + GL++++
Sbjct: 64 SFDEFTDFARANRGLVKDV 82
Score = 31.5 bits (72), Expect = 0.19
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRA 205
I+ +E DA+ G D+++ + D DGDG I E RA
Sbjct: 28 ISSSELGDALKTL-GSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARA 74
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 47.9 bits (114), Expect = 1e-06
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 144 DEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVM 203
+E + + + ++ D + K + +DL+ +G I L+ +M
Sbjct: 20 ARQERRLAEINREFLCDQKYSD-EENLPEK--LTAFKEKYMEFDLNNEGEIDLMSLKRMM 76
Query: 204 RACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
G+ + ++ + + I+Y
Sbjct: 77 EKL----GVPKTHLEMK----KMISEVTGGVSDTISYR 106
Score = 31.0 bits (70), Expect = 0.79
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 158 ITKNEFIDAMHQFAGQSP-DDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEE 209
I M + G ++K + I +++ ++M
Sbjct: 67 IDLMSLKRMMEKL-GVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSA 118
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT,
topoisomerase II binding protein, checkpoint; NMR {Homo
sapiens} SCOP: c.15.1.5
Length = 132
Score = 47.2 bits (112), Expect = 2e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 550 THLVCPTCSGSKYN--AALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
TH++ V KWLLEC G +SE+ Y+
Sbjct: 79 THVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYI 125
Score = 41.8 bits (98), Expect = 1e-04
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 473 VTLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
+ G R Q ++ VTHV++G + + + + +PHVV +WL +
Sbjct: 63 INSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLE 111
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat,
phosphoserine binding domain, DNA repair, cell division,
mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe}
PDB: 3l40_A*
Length = 220
Score = 48.8 bits (116), Expect = 2e-06
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 550 THLVCPTCSGS-KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQNVGSQ 607
THL+ P + K+ ++ +G V W+ C +T + V E+ YL E +G
Sbjct: 40 THLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCT 98
Score = 36.9 bits (85), Expect = 0.018
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 480 RVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
+ TH++ T K + P VVT++W+
Sbjct: 31 SITSNPSKCTHLIAPRILRT-SKFLCSIPYGPCVVTMDWINS 71
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger,
zinc-binding protein, ubiquitin LI antitumor protein;
1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Length = 210
Score = 48.6 bits (115), Expect = 2e-06
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 522 TKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGS---KYNAALKWGFPSVNKKWL 578
++L+ +L A EF TH+V P + K + G + +W+
Sbjct: 19 SELAVILKAKKYTEFDST---------VTHVVVPGDAVQSTLKCMLGILNGCWILKFEWV 69
Query: 579 LECARTGKRVSEQQY 593
C R E++Y
Sbjct: 70 KACLRRKVCEQEEKY 84
Score = 32.4 bits (73), Expect = 0.48
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 485 DDSVTHVVLGAFTPT-FHKLYACLSSKPHVVTVEWLKQ 521
D +VTHVV+ K + + ++ EW+K
Sbjct: 34 DSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKA 71
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA
replication, translession synthesis, TLS, DNA polymerase
zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Length = 97
Score = 46.0 bits (109), Expect = 2e-06
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 500 FHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSG 559
F + ++ + KL L G Y + ++ +TH++
Sbjct: 13 FSGVAIYVNG---YTDPSAEELRKLMMLHGGQYHVYY--------SRSKTTHIIATNLPN 61
Query: 560 SKYNAALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
+K + +W++E + G+ +S Y
Sbjct: 62 AKIKELKGEKV--IRPEWIVESIKAGRLLSYIPYQ 94
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein
binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo
sapiens} PDB: 3al3_A*
Length = 235
Score = 48.2 bits (114), Expect = 4e-06
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 547 KASTHLVCPTCS-GSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQNVG 605
TH+V KY A++ G +++ +L C G V E+ Y GS +
Sbjct: 44 PTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLT 103
Query: 606 SQS 608
+
Sbjct: 104 GIN 106
Score = 33.6 bits (76), Expect = 0.21
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 468 LGGFNVTLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
LGG + Q F D + TH+V+G K A +++ V+ +L+
Sbjct: 32 LGGLVIEKQCF------DPTCTHIVVGHPLRN-EKYLASVAAGKWVLHRSYLEA 78
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 47.6 bits (113), Expect = 4e-06
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 550 THLVCPTCSGS-KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQNVG 605
THL+ + + K+ A+ V +WL EC R K + EQ Y+ EA
Sbjct: 51 THLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFS 107
Score = 38.0 bits (88), Expect = 0.006
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 480 RVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
V + TH++ T T K +S H+VT EWL++
Sbjct: 42 EVAESAQKCTHLIASKVTRT-VKFLTAISVVKHIVTPEWLEE 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 6e-06
Identities = 99/630 (15%), Positives = 176/630 (27%), Gaps = 188/630 (29%)
Query: 115 HHNLVCLPRSGFDKGNLEW----LEQLFRQTVGDEKEICRD--DFKKILITKNEFIDAMH 168
HH++ F+ G ++ + +F D + C+D D K +++K E +
Sbjct: 4 HHHM------DFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIM 56
Query: 169 QFAGQSPDDKIKFLFRVYDLDGDGLIQ-------HKELQHVMRACMEEN-----GMQFSE 216
+ LF + ++Q + +M E +
Sbjct: 57 S---KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 217 EQIDHLTMALFEDADSENRGAIT----YESLKNQLEK---------HG----G------- 252
EQ D L + D + ++ Y L+ L + G G
Sbjct: 114 EQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 253 LLENLSISIDR-----WLVPPKPKKLANQSRLSQLIALRPYQLTLPYIKNNYVYLGFMFF 307
+ + + WL L N + + L Q L I N+
Sbjct: 170 VCLSYKVQCKMDFKIFWL------NLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSS 221
Query: 308 YLLVNIVLFTSRMYVFRKSNYYVIFARACGQCLNFNCMFVLVL-------MLR----HCI 356
+ + I + + KS Y CL LVL C
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYE-------NCL-------LVLLNVQNAKAWNAFNLSCK 267
Query: 357 TFLRTRGFSVFLPLDQHIYFHKMTGFFIFGYSVLHTIMHLLNFSLNVLGDGTINKKGLSL 416
L TR V L H T + + L L + L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLD---CRPQDLPR 320
Query: 417 TEWLFTSRPGLFGLI-----------NGWANPTGVCLIIILTIMFICSQTFVRKSGSFEL 465
E L T+ P +I + W + L I+ + F+
Sbjct: 321 -EVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDR 377
Query: 466 LFLGGF--NV-----TLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEW 518
L + F + L W + D HK Y+ + +
Sbjct: 378 LSV--FPPSAHIPTILLSLIWFDVIKSDV------MVVVNKLHK-YSLVE--------KQ 420
Query: 519 LKQTKLSQLLGAGYQEEFMKRDNPKNNKKASTH--LVCPTCSGSKYNAALKWGFPSVNKK 576
K++ +S + + Y E +K +N + + H +V YN + +
Sbjct: 421 PKESTIS--IPSIYLELKVKLEN-----EYALHRSIV------DHYNIPKTFDSDDLIPP 467
Query: 577 WL-----------LECARTGKRVSE--QQYLTGSDEASQNVGSQSNGFG-LQQNV----G 618
+L L+ +R++ +L D F L+Q +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---D------------FRFLEQKIRHDST 512
Query: 619 SHNGVGSQTNGVQSRLNGARSDAKPNEPDR 648
+ N GS N +Q +L + N+P
Sbjct: 513 AWNASGSILNTLQ-QLKFYKPYICDNDPKY 541
Score = 47.5 bits (112), Expect = 2e-05
Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 49/220 (22%)
Query: 23 WLEQLFRQTVGDEKEICRDDFKKILITKN-------ISDLYDKVHSFVWYSSQYGHFTPC 75
W + + D + K L+ K I +Y ++ + ++Y
Sbjct: 396 WFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL--ENEY------ 443
Query: 76 YVHTN--GFYRPSPRSGFDKGNL--EWLEQLFRQTVAY--TSLRIHHNLVCLPRSGFDKG 129
+H + Y FD +L +L+Q F + + ++ + D
Sbjct: 444 ALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-- 499
Query: 130 NLEWLEQLFRQT------VGDEKEICRD-DFKKILITKNEFIDAMHQFAGQSPDDKIKFL 182
+LEQ R G + F K I N+ + + + FL
Sbjct: 500 -FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLV----NAILDFL 552
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE--EQID 220
++ + LI K + A M E+ F E +Q+
Sbjct: 553 PKI----EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 43.7 bits (102), Expect = 3e-04
Identities = 62/383 (16%), Positives = 112/383 (29%), Gaps = 113/383 (29%)
Query: 22 EWLEQLFRQT-----------VGDEKEICRDDFK---KILITKNISDLYDKVHSFVWYSS 67
L +L + V + K + F KIL+T + D + ++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLS-----AA 284
Query: 68 QYGHFTPCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFD 127
H + H ++ L + Y R LPR
Sbjct: 285 TTTHIS--LDH--------HSMTLTPDE---VKSLLLK---YLDCRPQ----DLPREV-L 323
Query: 128 KGN---LEWLEQLFRQTVGDEKEICR-DDFKKILITK-NEFIDAMHQFAGQSPDDKIKFL 182
N L + + R + D++K + K I++ P +
Sbjct: 324 TTNPRRLSIIAESIRD------GLATWDNWKHVNCDKLTTIIES--SLNVLEPAE----- 370
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE-QIDHLTMALF-EDADSENRGAITY 240
R + + F I + ++L D + +
Sbjct: 371 --------------------YRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 241 ESLKNQL-EKHGGLLENLSISI-DRWLVPPKPKKLANQSRLSQLIALRPYQLTLPYIKNN 298
+ K L EK + +ISI +L KL N+ L + I + Y + + ++
Sbjct: 410 KLHKYSLVEKQP---KESTISIPSIYLE--LKVKLENEYALHRSI-VDHYNIPKTFDSDD 463
Query: 299 YVYL---GFMFFYL---LVNIVLFTSRMYVFRKSNYYVIFARACGQCLNFNCMFVLVLML 352
+ + + ++ L NI RM +FR +F L+F F L +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRM-----VF-------LDFR--F-LEQKI 507
Query: 353 RHCITFLRTRGFSVFLPLDQHIY 375
RH T G + Y
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFY 530
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 48.5 bits (116), Expect = 6e-06
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 161 NEFIDA-MHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
+EFI + + + S ++++ F+++D DG G I KEL + + E++
Sbjct: 401 SEFIASAIDRTILLS-RERMERAFKMFDKDGSGKISTKELFKLFS----QADSSIQMEEL 455
Query: 220 DHLTMALFEDADSENRGAITYE 241
+ ++ E D+ G + +
Sbjct: 456 E----SIIEQVDNNKDGEVDFN 473
Score = 45.4 bits (108), Expect = 6e-05
Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFA--------------GQSPDDKIKFLF 183
DE + + F+K+ ++ ++E + H+F G + +D+I L
Sbjct: 328 DETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLM 387
Query: 184 RVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESL 243
+ D+DG G I++ E + + ++ + + + A F+ D + G I+ + L
Sbjct: 388 PLLDMDGSGSIEYSE---FIASAIDRTIL----LSRERMERA-FKMFDKDGSGKISTKEL 439
Query: 244 KNQLEKHGGLLENLSI 259
+ ++ +
Sbjct: 440 FKLFSQADSSIQMEEL 455
Score = 35.0 bits (81), Expect = 0.095
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMR 204
I+ E Q ++++ + D + DG + E +++
Sbjct: 434 ISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 48.5 bits (116), Expect = 6e-06
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAGQS--------PDDKIKFLFRVYDLD 189
+E + D F+ I + + E ID + +G+ + ++ + D D
Sbjct: 343 EETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
Query: 190 GDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEK 249
+G I + E + M+ + D L A F+ D + G I+ + L +
Sbjct: 403 RNGYIDYSE---FVTVAMDRKSL----LSKDKLESA-FQKFDQDGNGKISVDELASVFGL 454
Query: 250 HG 251
Sbjct: 455 DH 456
Score = 44.7 bits (106), Expect = 1e-04
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
+EF+ DK++ F+ +D DG+G I EL V +
Sbjct: 410 SEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVF------GLDHLESKTWK 463
Query: 221 HLTMALFEDADSENRGAITYE 241
+ DS N G + +E
Sbjct: 464 ----EMISGIDSNNDGDVDFE 480
Score = 32.7 bits (75), Expect = 0.51
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
I+ +E K + D + DG + +E +++ N
Sbjct: 443 ISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNN 493
Score = 32.4 bits (74), Expect = 0.69
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGG 252
S+E+ LT +F D G + + L + K G
Sbjct: 341 SQEETKELT-DIFRHIDKNGDGQLDRQELIDGYSKLSG 377
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 48.2 bits (115), Expect = 9e-06
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAG--------QSPDDKIKFLFRVYDLD 189
+E++ D FKK+ + K E I+ + ++ ++++ + + D D
Sbjct: 352 EERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD 411
Query: 190 GDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEK 249
+G I++ E + CM++ + + L A F D++ G IT E L N
Sbjct: 412 KNGYIEYSE---FISVCMDKQIL----FSEERLRRA-FNLFDTDKSGKITKEELANLFGL 463
Query: 250 HG 251
Sbjct: 464 TS 465
Score = 45.1 bits (107), Expect = 7e-05
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 161 NEFIDA-MHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
+EFI M + S +++++ F ++D D G I +EL ++ SE+
Sbjct: 419 SEFISVCMDKQILFS-EERLRRAFNLFDTDKSGKITKEELANLF------GLTSISEKTW 471
Query: 220 DHLTMALFEDADSENRGAITYE 241
+ + +AD I ++
Sbjct: 472 ND----VLGEADQNKDNMIDFD 489
Score = 32.4 bits (74), Expect = 0.75
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACME 208
ITK E + + + D + D +I E +M +
Sbjct: 452 ITKEELANLFGL--TSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKICD 500
Score = 28.9 bits (65), Expect = 9.1
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLS 258
+ E+ LT +F+ D G + + L L
Sbjct: 350 TLEERKELT-DIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELG 392
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide
complex, antitumor protein; HET: SEP; 1.85A {Homo
sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A*
1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A
3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A
2ing_X 1oqa_A
Length = 214
Score = 45.5 bits (107), Expect = 2e-05
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 523 KLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGS------KYNAALKWGFPSVNKK 576
K ++ + +TH+V T + KY + G V+
Sbjct: 22 KFARKHHITLTNLITEE---------TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYF 72
Query: 577 WLLECARTGKRVSEQQYLTGSDE 599
W+ + + K ++E + D
Sbjct: 73 WVTQSIKERKMLNEHDFEVRGDV 95
Score = 30.1 bits (67), Expect = 2.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 485 DDSVTHVVLGAFTPTF----HKLYACLSSKPHVVTVEWLKQ 521
+ THVV+ K + ++ VV+ W+ Q
Sbjct: 36 TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQ 76
Score = 30.1 bits (67), Expect = 2.6
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 539 RDNPKNNKKASTHLVCPTCSGSK------YNAALKWGFPSVNKKWLLECARTGKRVSEQQ 592
++ H + + + P V ++W+L+ +
Sbjct: 148 KELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDT 207
Query: 593 YL 594
YL
Sbjct: 208 YL 209
Score = 28.6 bits (63), Expect = 7.1
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 446 LTIMFICSQTFVRKSGSFELLFLGGFNVTLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYA 505
L I T + ++ L G +V + + VV + +A
Sbjct: 119 LEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHA 178
Query: 506 CL-SSKPHVVTVEWL 519
+ VVT EW+
Sbjct: 179 IGQMCEAPVVTREWV 193
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 43.4 bits (102), Expect = 2e-05
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 162 EFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACME--------ENGMQ 213
E + + + K F ++D++ DG++ +EL+ + +E E+ M+
Sbjct: 7 EVWEELDGLDPNRFN--PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMR 64
Query: 214 FSEEQIDHLTMALFEDADSENRGAITYE 241
EE+ + + ++ D+ +T E
Sbjct: 65 EMEEERLRMREHVMKNVDTNQDRLVTLE 92
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker
complexed with non-BRCT protein, three-helix bundle,
parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4
c.15.1.4 PDB: 1gzh_B
Length = 259
Score = 45.6 bits (107), Expect = 3e-05
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 540 DNPKNNKKASTHLVCPTCSGS-KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSD 598
+ + N L+ + KY L G P V+ W+ + + + + YL +
Sbjct: 79 NEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138
Query: 599 EASQN 603
+ +
Sbjct: 139 YSLEE 143
Score = 35.9 bits (82), Expect = 0.042
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 500 FHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGY-QEEFMKRDNPKNNKKASTHLVC-PTC 557
F L L S +E + + GA ++ N +V P+C
Sbjct: 156 FQNLKVLLVSDQQQNFLELWSE--ILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSC 213
Query: 558 SGSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQY 593
S A P V+++W+++C G+R+ +Q+
Sbjct: 214 PASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH 249
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A
{Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Length = 229
Score = 44.4 bits (104), Expect = 5e-05
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 522 TKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGS------KYNAALKWGFPSVNK 575
K ++ + + +TH++ T + KY + G V+
Sbjct: 24 QKFAEKYRLALTDVITEE---------TTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSY 74
Query: 576 KWLLECARTGKRVSEQQY 593
W+++ + K +S ++
Sbjct: 75 SWVIKSIQERKLLSVHEF 92
Score = 31.7 bits (71), Expect = 0.81
Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 5/64 (7%)
Query: 536 FMKRDNPKNNKKASTHLVCPTCSGSKYNA-----ALKWGFPSVNKKWLLECARTGKRVSE 590
+K + +V S + V W+L+ +
Sbjct: 148 VVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDL 207
Query: 591 QQYL 594
YL
Sbjct: 208 DAYL 211
Score = 30.1 bits (67), Expect = 2.6
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 481 VMQPDDSVTHVVLGAFTPTF----HKLYACLSSKPHVVTVEWLKQ 521
+ THV++ K + ++ +V+ W+ +
Sbjct: 35 TDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIK 79
Score = 28.6 bits (63), Expect = 7.8
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 446 LTIMFICSQTFVRKSGSFELLFLGGFNVTLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYA 505
L I T + K +L L G +V ++ + + + V++ T
Sbjct: 121 LQIYCCEPFTNMPKDELERMLQLCGASV-VKELPLLTRDTGAHPIVLVQPSAWTEDNDCP 179
Query: 506 CLS--SKPHVVTVEWL 519
+ K +V +W+
Sbjct: 180 DIGQLCKGRLVMWDWV 195
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 45.5 bits (108), Expect = 5e-05
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 144 DEKEICRDDFKKI------LITKNEFIDAMHQFAG-----------QSPDDKIKFLFRVY 186
DE + F K+ + + E I+ + + + ++ +
Sbjct: 332 DETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV 391
Query: 187 DLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQ 246
D D +G I++ E + M+ + + L A F DS+N G I+ L
Sbjct: 392 DFDKNGYIEYSE---FVTVAMDRKTL----LSRERLERA-FRMFDSDNSGKISSTELATI 443
Query: 247 LEKHG 251
Sbjct: 444 FGVSD 448
Score = 45.1 bits (107), Expect = 8e-05
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 161 NEFIDA-MHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQI 219
+EF+ M + S ++++ FR++D D G I EL + E
Sbjct: 402 SEFVTVAMDRKTLLS-RERLERAFRMFDSDNSGKISSTELATIF------GVSDVDSETW 454
Query: 220 DHLTMALFEDADSENRGAITYE 241
+ + D N G + ++
Sbjct: 455 KS----VLSEVDKNNDGEVDFD 472
Score = 32.7 bits (75), Expect = 0.60
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 215 SEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRWLVPPKPKKL 273
S+++ LT A+F D G + L ++ + + +D V + ++
Sbjct: 330 SQDETKELT-AIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQV 387
Score = 32.0 bits (73), Expect = 0.85
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACM 207
I+ E + K + D + DG + E Q ++
Sbjct: 435 ISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLC 482
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 43.6 bits (103), Expect = 9e-05
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 15/81 (18%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
EF+ AM++F + LF + G ++ E+ ++ G ++
Sbjct: 107 YEFM-AMYKFM-----ELAYNLFVMNARARSGTLEPHEILPALQQL----GFYINQRTSL 156
Query: 221 HLTMALFEDADSENRGAITYE 241
L +
Sbjct: 157 LLHR-----LFARGMAFCDLN 172
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 172 GQSPDD--KIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFED 229
D +I F D D G ++ EL G++ S + + M +F
Sbjct: 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFP----GGIRLSPQTALRM-MRIF-- 96
Query: 230 ADSENRGAITYE 241
D++ G I++
Sbjct: 97 -DTDFNGHISFY 107
Score = 34.8 bits (80), Expect = 0.074
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ NE + + + R++D D +G I E + +
Sbjct: 68 LEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYK------------- 114
Query: 218 QIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRWLV 266
++ LF G + + L++ G ++ L
Sbjct: 115 FMELA-YNLFVMNARARSGTLEPHEILPALQQLG---FYINQRTSLLLH 159
Score = 28.2 bits (63), Expect = 9.7
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
+Q + F D + G + L G
Sbjct: 44 TIPLDQYTRI-YQWFMGVDRDRSGTLEINELMMGQFPGG 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-04
Identities = 103/675 (15%), Positives = 160/675 (23%), Gaps = 322/675 (47%)
Query: 110 TSLR---IHHNLVCLPRSGFDKGNLE--WL---------EQLFRQTVGDEKEICRDDFKK 155
S R + H G+LE L QL ++ F K
Sbjct: 4 YSTRPLTLSH------------GSLEHVLLVPTASFFIASQL------------QEQFNK 39
Query: 156 ILITKNEFIDAMHQFAGQS-PDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQF 214
IL E FA P + + + + L +V QF
Sbjct: 40 ILPEPTE------GFAADDEPTTPAELVGK-F------------LGYVSSLVEPSKVGQF 80
Query: 215 SEEQIDHLTMAL--FEDADSENRGAITYESLKNQLEKHGGLLENLSISIDRWLVPPKPKK 272
+ L + L FE+ Y L+ + H ++ L+
Sbjct: 81 DQV----LNLCLTEFEN---------CY--LEGN-DIH---------ALAAKLLQENDTT 115
Query: 273 LANQSRLSQLIALRPY-----QLTLPYIKNNYVYLGFMFFYLLVNIVLFTSRMYVFR--- 324
L L ++ Y P+ K + S + FR
Sbjct: 116 LVKTKEL-----IKNYITARIMAKRPFDKKS------------------NSAL--FRAVG 150
Query: 325 --KSNYYVIFARACGQCLNFNCMFVLVLMLRHCITFLRTRGFSVFLPLD--QHIY--FHK 378
+ IF GQ G + + + +Y +H
Sbjct: 151 EGNAQLVAIFG---GQ------------------------G-NTDDYFEELRDLYQTYHV 182
Query: 379 MTGFFIFGYSVLHTIMHLLNFSLNVLGDGTINKKGLSLTEWLFT--SRPGLFGLINGWAN 436
+ G I + L L + +GL++ EWL + P
Sbjct: 183 LVGDLIK-----FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD---------- 227
Query: 437 PTGVCLIIILTIMFICSQTFVRKSGSFELLFLGGFNVTLQGFWRVMQPDDSVTHVVLGAF 496
++ S S L+ + + L + VT +LG F
Sbjct: 228 -----------KDYLLSIPI-----SCPLIGV----IQLAHY--------VVTAKLLG-F 258
Query: 497 TPT--FHKLYACLSSKPHVVTV-------EWLKQTKLSQLLGAGYQEEFMKRDNPKNNKK 547
TP L +VT W E F + +K
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSW---------------ESFF-----VSVRK 298
Query: 548 ASTHLVCPTCSGSKYNAALKWGFPSVNKKWLLECARTGKRVSEQQYLTGSDEASQNVGSQ 607
A+ F ++ G R + Y S S S
Sbjct: 299 -----------------AITVLF------FI------GVR-CYEAYPNTSLPPSILEDSL 328
Query: 608 SNGFG---------------LQQNVGSHNGVGSQTNGVQ-SRLNGARSDAKPNEPDRLDT 651
N G +Q V N V+ S +NGA+
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK------------- 375
Query: 652 KENHTSSRKNPEFESASQGSQLSGKSASKKRKLCLLNNGDGEGLCSPVKRTALDSKHSPV 711
N +SG S L LN L +P
Sbjct: 376 --NLV----------------VSGPPQS----LYGLN-------------LTLRKAKAPS 400
Query: 712 KQSQNSS-FSQGKPT 725
Q+ FS+ K
Sbjct: 401 GLDQSRIPFSERKLK 415
Score = 42.3 bits (99), Expect = 8e-04
Identities = 106/631 (16%), Positives = 166/631 (26%), Gaps = 250/631 (39%)
Query: 10 SRPRSGFDKGNLE--WL---------EQLFRQTVGDEKEICRDDFKKILI--TKNI-SDL 55
+RP + G+LE L QL ++ F KIL T+ +D
Sbjct: 6 TRPLT-LSHGSLEHVLLVPTASFFIASQL------------QEQFNKILPEPTEGFAAD- 51
Query: 56 YDKVHSFVWYSSQYGHFTPCYVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLR-- 113
D+ + ++ + V PS FD+ L F L
Sbjct: 52 -DEPTTPAELVGKFLGYVSSLVE------PSKVGQFDQV-LNLCLTEFENCY----LEGN 99
Query: 114 -IHHNLVCLPRSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQ--- 169
IH L + T+ KE+ + ++ I D
Sbjct: 100 DIHALAAKLLQEN-------------DTTLVKTKELIK-NYITARIMAKRPFDKKSNSAL 145
Query: 170 F-AGQSPDDKIKFLFRVYDLDGDGLIQH--KELQHVMRACMEENGMQFSEEQIDHLTMAL 226
F A + ++ +F G G +EL+ L
Sbjct: 146 FRAVGEGNAQLVAIF-----GGQGNTDDYFEELRD------------------------L 176
Query: 227 FEDADSENRGAITYESLKNQL-EKHGGLLENLS-------------ISIDRWLVPPKPKK 272
++ TY L L + L L ++I WL P
Sbjct: 177 YQ----------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--ENPSN 224
Query: 273 LANQSRLSQ------LIALRPYQLTLPYIKNNYVY----LGFMFFYLLVNIVLFTSRMYV 322
++ L LI + QL +YV LGF L + T
Sbjct: 225 TPDKDYLLSIPISCPLIGV--IQLA------HYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 323 FRKSNYYVIFARACGQCLNFNCMFVLVLMLRHCITFLRTRGFSVFLPLDQHIYFHKMTGF 382
++ A A + ++ FV V R IT L F
Sbjct: 277 -------LVTAVAIAETDSWESFFVSV---RKAITVL----------------------F 304
Query: 383 FIFGYSVLHTIMHLLNFSLNVLGDGTINKKG-----LSLT---------------EWLFT 422
FI G + + ++L D N +G LS++ L
Sbjct: 305 FI-GVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 423 SRPGLFGLINGWANPTGVCLIIILTIMFICSQTFVRKSGSFELLFLGGFNVTLQGFWRVM 482
+ L+NG + SG + L+ G N+TL+
Sbjct: 363 GKQVEISLVNG---AK----------NLVV-------SGPPQSLY--GLNLTLRKAKAPS 400
Query: 483 QPDDS----------VTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQTKLSQLLGAGY 532
D S ++ L +P FH S LL
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASP-FH-----------------------SHLL-VPA 435
Query: 533 QEEFMKRDNPKNNKKASTHLVCP---TCSGS 560
+ K N + + P T GS
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 37.7 bits (87), Expect = 0.019
Identities = 79/496 (15%), Positives = 135/496 (27%), Gaps = 183/496 (36%)
Query: 422 TSRPGLFGLINGWANPTGVCLIIILTIMFI-CSQ---TFVRK--------------SGSF 463
++RP L +G +++ T F SQ F + +
Sbjct: 5 STRP--LTLSHGSLEHV----LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 464 ELL--FLGGFNVTLQGFWRVMQPD-----DSVTHVVLGAFTPTF------HKLYACLSSK 510
EL+ FLG + V+ +++P D V ++ L F + H L A L +
Sbjct: 59 ELVGKFLG-Y-VS-----SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 511 PHVVTVEWLKQTKLSQLLGAGYQ-EEFMKRDNPKNNKKASTHLVCPTCSGSKYNAALKWG 569
K +L+ KR K + A
Sbjct: 112 ND------TTLVKTKELIKNYITARIMAKRPFDKKSNSA--------------------- 144
Query: 570 FPSVNKKWLLECARTGK-RVSEQQYLT--GSDEASQNVGSQSNGFG-LQQ--NVGSHNGV 623
L G ++ G Q G+ + F L+ V
Sbjct: 145 --------LFRAVGEGNAQL----VAIFGG-----Q--GNTDDYFEELRDLYQTYHVL-V 184
Query: 624 GSQTNGVQSRLNG---ARSDAKPNEPDRLDTKE--NHTSSRKNPEFESASQGS------- 671
G L+ DA+ L+ E + S+ + ++ + S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 672 QLS---------GKSASKKRKLCLLNNGDGEGLCSPVKRTALDSKHSPVKQSQNSSFSQG 722
QL+ G + + R G +GL + V DS
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---------------- 288
Query: 723 KPTREERKQWEKLMDNLSKNCQKLSANNKVEAWVNENELLAQARTPNSGQRTTNNSERTP 782
WE ++ K L ++ G R E P
Sbjct: 289 ---------WESFFVSVRKAITVL-------FFI--------------GVRCY---EAYP 315
Query: 783 SQNNPSSQRIANNPSNERTPS-QTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKS-RT 840
+ + P S + +NE PS +IS+ + + +++ N L K
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQ-------EQVQDYVNKTNSHLPAGKQVEI 368
Query: 841 SRDSDETNSPPKRNSV 856
S N +N V
Sbjct: 369 SL----VNGA--KNLV 378
Score = 30.4 bits (68), Expect = 3.4
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 34/124 (27%)
Query: 669 QGSQLSG-------KSASKKRKLCLLNNGDGEGLCSPVKRTALD-SKHSPVKQSQNSSFS 720
QGSQ G S + + + N D + LD ++PV + +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQD---VWNRAD-NHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 721 QGKPTRE------------ERKQWEKLMDNLSKNCQKLSANNKVEAWVNENELLAQARTP 768
+GK RE + + EK+ ++++ + + +E LL+ T
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-------FRSEKGLLSA--TQ 1730
Query: 769 NSGQ 772
+ Q
Sbjct: 1731 FT-Q 1733
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 39.5 bits (93), Expect = 2e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 177 DKIKFLFRVYDL-DGD-GLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSEN 234
++IK F V+ +GD I +EL+ VM+ + +D + E+ D
Sbjct: 5 EEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPS--LLKGMSTLD----EMIEEVDKNG 58
Query: 235 RGAITYE 241
G +++E
Sbjct: 59 DGEVSFE 65
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA
replication inhibitor, phosphoprotein, checkpoint
signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe}
PDB: 2vxc_A*
Length = 241
Score = 43.0 bits (100), Expect = 2e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 539 RDNPKNNKKASTHLVCPTCSGS-KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
+ ++ +V T S KY AL + P V+ +++ +C + + V YL
Sbjct: 59 KPQKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYL 115
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 42.1 bits (99), Expect = 2e-04
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 47/152 (30%)
Query: 122 PRSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------ 157
F + L F G + +I D+ ++ L
Sbjct: 23 GGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSML 82
Query: 158 -------ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEEN 210
+ NEF + + + F +D D G + +ELQ +
Sbjct: 83 DRDMSGTMGFNEFKELWAVL------NGWRQHFISFDTDRSGTVDPQELQKALTTM---- 132
Query: 211 GMQFSEEQIDHLTMALFEDADSENRGAITYES 242
G + S + ++ ++ + G IT++
Sbjct: 133 GFRLSPQAVN----SIAKRYS--TNGKITFDD 158
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 42.1 bits (98), Expect = 6e-04
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 550 THLVCPTCSGSKYNAALKWG-FPSVNKKWLLECARTGKRVSEQQYL 594
THL+ K A+ G V WL E KR+ E YL
Sbjct: 325 THLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYL 370
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 39.7 bits (93), Expect = 0.001
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ N F + + K F D DG G ++H EL+ + G + S +
Sbjct: 57 MGFNAFKELWAAL------NAWKENFMTVDQDGSGTVEHHELRQAIGLM----GYRLSPQ 106
Query: 218 QIDHLTMALFEDADSENRGAITYES 242
+ + + G I ++
Sbjct: 107 TLT----TIVKRYS--KNGRIFFDD 125
Score = 32.7 bits (75), Expect = 0.21
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 189 DGDGLIQHKELQHVMRACMEENGMQ-FSEEQIDHLTMALFEDADSENRGAITYE 241
DG + +ELQ + FS E + +A+ D ++ G + +
Sbjct: 11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIM-IAML---DRDHTGKMGFN 60
Score = 31.2 bits (71), Expect = 0.84
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 134 LEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSP--DDKIKFLFRVYDLDGD 191
+ F G + E+ ++ ++ L SP + + + + D D
Sbjct: 2 VYTYFSAVAGQDGEVDAEELQRCL-------TQSGINGTYSPFSLETCRIMIAMLDRDHT 54
Query: 192 GLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
G + + + ++ F D + G + + L+ + G
Sbjct: 55 GKMGFNAFKELWA-------------ALNAWKEN-FMTVDQDGSGTVEHHELRQAIGLMG 100
Query: 252 GLLENLSISIDRWLV 266
LS +V
Sbjct: 101 ---YRLSPQTLTTIV 112
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEE 217
+ EF + K + +++ +D+D G I EL A G +E
Sbjct: 64 LGFEEFKYLWNNI------KKWQAIYKQFDVDRSGTIGSSELPGAFEAA----GFHLNEH 113
Query: 218 QIDHLTMALFEDADSENRGAITYES 242
+ S+ G + +++
Sbjct: 114 LYSMIIR-----RYSDEGGNMDFDN 133
Score = 35.9 bits (83), Expect = 0.026
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 176 DDKIKFLFRVYDLDGDGLIQHKELQHVMRACM----EENGMQFSEEQIDHLTMALFEDAD 231
+ + LF D + EL +++ + + F + + +A+ D
Sbjct: 3 VRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSM-VAVM---D 57
Query: 232 SENRGAITYE 241
S+ G + +E
Sbjct: 58 SDTTGKLGFE 67
Score = 34.7 bits (80), Expect = 0.057
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 16/125 (12%)
Query: 132 EWLEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGD 191
+LF Q GD+ E+ + IL D + + V D D
Sbjct: 4 RQFRRLFAQLAGDDMEVSATELMNIL--NKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 192 GLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHG 251
G + +E +++ I ++ D + G I L E G
Sbjct: 62 GKLGFEEFKYLW-------------NNIKKWQAI-YKQFDVDRSGTIGSSELPGAFEAAG 107
Query: 252 GLLEN 256
L
Sbjct: 108 FHLNE 112
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 41.1 bits (95), Expect = 0.001
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 543 KNNKKASTHLVCPTCSGSKYNAALKWG-FPSVNKKWLLECARTGKRVSEQQYL 594
+ THL+ K A+ G V WL E KR+ E YL
Sbjct: 388 LDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYL 440
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 39.6 bits (93), Expect = 0.002
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 183 FRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYE 241
F++ D D DG I +++ + G +E+++D + +E G I +
Sbjct: 63 FQLIDQDKDGFISKNDIRATFDSL----GRLCTEQELDSM--------VAEAPGPINFT 109
Score = 35.8 bits (83), Expect = 0.032
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 144 DEKEICRDDFK-----KILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKE 198
DE+++ + F + ++ + + D++ +DG+GLI K+
Sbjct: 123 DEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKK 182
Query: 199 LQHVMRACMEENG 211
++ +E G
Sbjct: 183 FAQILTKGAKEEG 195
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET:
SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A*
3sht_A 3shv_A*
Length = 199
Score = 39.0 bits (90), Expect = 0.003
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 521 QTKLSQLLGAGYQEEFMKRDNPKNNKKASTHLVCPTCSGS-KYNAALKWGFPSVNKKWLL 579
+ +L G + + +TH++ + + G ++ W+L
Sbjct: 28 IQVVDKLKGFSIAPDVCET---------TTHVLSGKPLRTLNVLLGIARGCWVLSYDWVL 78
Query: 580 ECARTGKRVSEQQY 593
G +SE+ +
Sbjct: 79 WSLELGHWISEEPF 92
Score = 36.7 bits (84), Expect = 0.016
Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 52/171 (30%)
Query: 468 LGGFNVTLQGFWRVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ--TKLS 525
L GF++ ++ THV+ G T + ++ V++ +W+
Sbjct: 34 LKGFSIA-------PDVCETTTHVLSGKPLRTL-NVLLGIARGCWVLSYDWVLWSLELGH 85
Query: 526 QLLGAGYQEEFMKRDNPKNNKKA-------------------STHLVCPTCSGSK----- 561
+ ++ P + + P +
Sbjct: 86 WISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHL 145
Query: 562 ------------------YNAALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
Y+ K +++KW+L+ K + + YL
Sbjct: 146 CGGRVSQVPRQASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENYL 196
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 161 NEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
NEF + + + F +D D G + +ELQ + G + + + ++
Sbjct: 62 NEFKELWAVL------NGWRQHFISFDSDRSGTVDPQELQKALTTM----GFRLNPQTVN 111
Query: 221 HLTMALFEDADSENRGAITYES 242
++ + G IT++
Sbjct: 112 ----SIAKRYS--TSGKITFDD 127
Score = 34.3 bits (79), Expect = 0.065
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 177 DKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQ-FSEEQIDHLTMALFEDADSENR 235
D + F DG I ELQ + G + F+ E + +++ D +
Sbjct: 2 DPLYGYFASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLM-VSML---DRDMS 56
Query: 236 GAITYE 241
G + +
Sbjct: 57 GTMGFN 62
Score = 30.8 bits (70), Expect = 0.92
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)
Query: 134 LEQLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGL 193
L F G + +I D+ ++ L T++ F + + + + D D G
Sbjct: 4 LYGYFASVAGQDGQIDADELQRCL-TQSGIAGGYKPF----NLETCRLMVSMLDRDMSGT 58
Query: 194 IQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGL 253
+ E + + NG + F DS+ G + + L+ L G
Sbjct: 59 MGFNEFKELW---AVLNGWR-----------QHFISFDSDRSGTVDPQELQKALTTMGFR 104
Query: 254 LEN 256
L
Sbjct: 105 LNP 107
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein
interactions, DNA L III-alpha BRCT2 domain, DNA binding
protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A*
3qvg_B* 1cdz_A
Length = 104
Score = 36.1 bits (83), Expect = 0.007
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 550 THLVCPTCSGSKYNAALK--WGFPSVNKKWLLECARTGKRVSEQQYL 594
++ + AL V +W+ C K + Q Y
Sbjct: 47 QFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQLYG 93
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 34.7 bits (80), Expect = 0.018
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 174 SPDDKIKF--LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDAD 231
SP +K K+ +F D D DG + E++ + + H ++ D
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK------TGLPSTLLAH----IWSLCD 54
Query: 232 SENRGAITYE 241
+++ G ++ +
Sbjct: 55 TKDCGKLSKD 64
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing,
coiled coil, DNA damage, DNA recombination, isopeptide
bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB:
2e2w_A*
Length = 263
Score = 36.1 bits (82), Expect = 0.032
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 547 KASTHLVCPTCSGS-----KYNAALKWGFPSVNKKWLLECARTGKRVSEQQYL 594
+ +H++ + K F + + W+ + + E QYL
Sbjct: 210 EGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYL 262
Score = 34.9 bits (79), Expect = 0.080
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 480 RVMQPDDSVTHVVLG---AFTPTFHKLYACLSSKPHVVTVEWLKQ 521
V + V+HV++G + F K ++ W+
Sbjct: 204 VVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTD 248
Score = 31.4 bits (70), Expect = 1.1
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 544 NNKKASTHLVCPTCSGSKYNAALKWG-FPSVNKKWLLECARTGKRVSEQQY 593
N T+ V + + V WLLEC +T V Q
Sbjct: 43 QNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPR 93
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 36.0 bits (82), Expect = 0.038
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 536 FMKRDNPKNNKKASTHLVCPTCSGSKYNAALKWGFPSVNKKWLLECARTGKRV-SEQQYL 594
+ K + L+ + ++ A + G+ ++ W+L+C + + E Y
Sbjct: 42 LIYNVILKRHSIGDVRLISCK-TTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNYC 100
Query: 595 TGSDEASQNVGSQS 608
+ + V +
Sbjct: 101 FNVSQKMRAVAEKR 114
Score = 29.1 bits (64), Expect = 5.2
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 573 VNKKWLLECARTGKRVSEQQYL 594
V +W+ +V E+ +
Sbjct: 239 VAPEWVDHSINENCQVPEEDFP 260
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 33.6 bits (77), Expect = 0.060
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 174 SPDDKIKF--LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDAD 231
++K+ LF +D G + + + ++ + Q+ ++ +D
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQ------SSLPQAQLAS----IWNLSD 58
Query: 232 SENRGAITYE 241
+ G +T E
Sbjct: 59 IDQDGKLTAE 68
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 34.3 bits (78), Expect = 0.14
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 158 ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGM----- 212
I F + +DK ++LF+ G + L ++ ++
Sbjct: 149 IRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVA 207
Query: 213 QFSEEQIDHLTMALFEDADSENRGAITYE 241
F I+ + F+ A+ N+ I
Sbjct: 208 SFGGSNIEPSVRSCFQFAN--NKPEIEAA 234
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 32.0 bits (73), Expect = 0.19
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 174 SPDDKIKF--LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDAD 231
+ + + + FR D I ++ + S ++ ++ L +D
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTK------SKLSIPELSYI-WEL---SD 66
Query: 232 SENRGAITYE 241
++ GA+T
Sbjct: 67 ADCDGALTLP 76
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 33.8 bits (78), Expect = 0.22
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 162 EFI-DAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQID 220
F + + + I D I + + + A Q E ++
Sbjct: 366 RFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVW 425
Query: 221 H 221
H
Sbjct: 426 H 426
Score = 31.5 bits (72), Expect = 1.1
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 23/118 (19%)
Query: 153 FKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQ--HKELQHVMRACMEE- 209
K ++T + + + IK ++ + +G + K M A E
Sbjct: 299 LKGAILT----VMLATRNFSVRKQEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEA 354
Query: 210 -----NGMQFSE---EQIDHLTMALFEDA--------DSENRGAITYESLKNQLEKHG 251
G+ F E + + I Y + L+ G
Sbjct: 355 LGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGG 412
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 32.6 bits (74), Expect = 0.29
Identities = 16/146 (10%), Positives = 39/146 (26%), Gaps = 44/146 (30%)
Query: 129 GNLEWLEQLFRQTVGDEKEICRDDFKKIL------------------------------- 157
G+ V +I + +L
Sbjct: 2 GSSHHHHHHSSGLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNG 61
Query: 158 -ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE 216
+ + EF + + +F+ G++ +L + G+ S
Sbjct: 62 RLDQEEFARLWKRL------VHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISR 114
Query: 217 EQIDHLTMALFEDADSENRGAITYES 242
E + +T+ S++ G +++ S
Sbjct: 115 ELLHLVTL-----RYSDSVGRVSFPS 135
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 31.2 bits (71), Expect = 0.29
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 174 SPDDKIKF--LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDAD 231
+ + + + F+ D +G I + + ++ H ++E +D
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTK------SKLPILELSH----IWELSD 53
Query: 232 SENRGAITYE 241
+ GA+T +
Sbjct: 54 FDKDGALTLD 63
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.61
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 725 TREE-RKQWEKLMDNLSKNCQKLSANNKVEAWVNENELLAQ 764
RE+ +K E+ S+ +K NN++ + Q
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIA----DKAFYQQ 148
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains
histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens}
PDB: 2azm_A* 3k05_A* 2ado_A
Length = 209
Score = 31.9 bits (72), Expect = 0.68
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 480 RVMQPDDSVTHVVLGAFTPTFHKLYACLSSKPHVVTVEWLKQ 521
+ +H+V T K L +++++WL Q
Sbjct: 35 SLAGSAAEASHLVTDRIRRT-VKFLCALGRGIPILSLDWLHQ 75
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription
regulation, repressor, activator, DNA-binding; 2.60A
{Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Length = 178
Score = 31.4 bits (71), Expect = 0.73
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 143 GDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFR-VYDLDGDGLI------- 194
GD EI D +++ K I + FA + D L V D D I
Sbjct: 31 GDPLEIFVDRDGDVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSK 90
Query: 195 ---QHKELQHVMRACMEENGMQFSEEQ 218
+K + ++ M++ +
Sbjct: 91 KDYLNKSISEMLERTMDQRSSVLESDA 117
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 29.8 bits (67), Expect = 0.91
Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 173 QSPDDKIKF--LFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDA 230
Q + +R + G + + ++ + + +++ A
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKS------GLPDLILGK----IWDLA 54
Query: 231 DSENRGAITYESLKNQLEKHGGLLENLSISID--RWLVPPKPK 271
D++ +G ++ + L L +S+ VPP P+
Sbjct: 55 DTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLSLAVPP-PR 96
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis
disorder, zellweger syndrome, membrane, prenylation;
2.05A {Homo sapiens}
Length = 126
Score = 30.3 bits (68), Expect = 1.1
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 139 RQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGL 193
+T D + + F+ +L + + + Q G P + + + D D L
Sbjct: 77 AETPTDSETTQKARFEMVL----DLMQQL-QDLGHPPKELAGEMPPGLNFDLDAL 126
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 1.2
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 537 MKRDNPKNNKKASTHLVCPTCSGSKYN 563
+ + + + L CP C
Sbjct: 7 IDKRAGRRGPNLNIVLTCPECKVYPPK 33
>2bas_A YKUI protein; EAL domain, structural genom protein structure
initiative, midwest center for structural genomics,
MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP:
c.1.33.1 d.110.6.2 PDB: 2w27_A*
Length = 431
Score = 31.2 bits (71), Expect = 1.4
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 26/114 (22%)
Query: 81 GFY--RPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEWLEQLF 138
G+Y PS + L+ F Q + + ++ + E +
Sbjct: 254 GYYLVSPSETFLERDVLKQRLKTEFHQFITHEKKKLETVYE----------HSEQFYKRV 303
Query: 139 RQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDG 192
Q V ++ D + + A + D FR+Y D +G
Sbjct: 304 HQAVTSLRKNNLSS----------DDDFIKKLAEELTD----CSFRIYMCDEEG 343
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 30.5 bits (69), Expect = 1.5
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 20/108 (18%)
Query: 149 CRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACME 208
CR F++ + + K++ + +++D + + L + + H +
Sbjct: 42 CRKWFEESEELLAQSVK----------SGKVERIIKLFDKEKESLQRGNVMHHYIDYSAP 91
Query: 209 ENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGLLEN 256
E + +F D + E + EK+ GL E
Sbjct: 92 EQALSALH--------KMFATQDEWGNLTL--EEVATYAEKNLGLKEQ 129
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA
polymerase, teminal deoxynucleotidyltransferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 477 GFWRVMQPDDSVTHVVL-----GAFTPTFHKLYACLSSKPHVVTVEWL 519
GF + DSVTH+V +SS+P ++ V WL
Sbjct: 49 GFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWL 96
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A
phosphatase, motor protein, structur protein, membrane
protein; 1.70A {Plasmodium falciparum 3D7}
Length = 342
Score = 31.0 bits (69), Expect = 1.7
Identities = 8/88 (9%), Positives = 21/88 (23%), Gaps = 3/88 (3%)
Query: 56 YDKVHSFVWYSSQYGHFTPCYVHTNGFYRPSPRSGFDKGNLEWLEQ---LFRQTVAYTSL 112
S V + ++ T P + L+ + ++ + +
Sbjct: 136 VSSGPSIVKTGHKDLAAAFIFIDTWVLSSNFPYKKIHEKAWNDLKSQLSVAKKIADFIIV 195
Query: 113 RIHHNLVCLPRSGFDKGNLEWLEQLFRQ 140
+ S +L L +
Sbjct: 196 VGDQPIYSSGYSRGSSYLAYYLLPLLKD 223
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
oxidoreductase, competence, redox-active center; 1.40A
{Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Length = 202
Score = 30.1 bits (68), Expect = 2.1
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 149 CRDDFKKIL-ITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQHKELQHVMRACM 207
C+ I + +FID +KF F G G +
Sbjct: 44 CKVFNSDIFPKIQKDFID----------KGDVKFSFVNVMFHGKGSRLAALASEEVWKED 93
Query: 208 EENGMQFSEEQIDHLTMALFEDADSENRGAITYESLKNQLEKHGGL 253
++ F E LFE + +T L + + +
Sbjct: 94 PDSFWDFHE--------KLFEKQPDTEQEWVTPGLLGDLAKSTTKI 131
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 29.3 bits (65), Expect = 2.2
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 136 QLFRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLIQ 195
+L + TV D E R K+ +E + D +I+ +F YD DGD +
Sbjct: 43 KLKKNTVDDISESLRQGGGKL--NFDELRQDLK--GKGHTDAEIEAIFTKYDQDGDQELT 98
Query: 196 HKELQHVMRACMEENGMQFSEE 217
E MR +E+ +
Sbjct: 99 EHE-HQQMRDDLEKEREDLDLD 119
>3v62_C ATP-dependent DNA helicase SRS2, proliferating cell nuclear
antigen; ubiquitin-like protein PCNA; HET: MLY; 2.90A
{Saccharomyces cerevisiae}
Length = 69
Score = 27.8 bits (61), Expect = 2.5
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 785 NNPSSQRIANNP--SNERTPSQTNISSQAKSSQASQPSDLVKTIDELNQQLSRAKSRTSR 842
+NP + N P SN + + + K S+ + +D +Q LSRAK ++
Sbjct: 2 HNPDDTTVDNRPIISNAKFLADAAMKKTQKFSKKVKNEPASSQMDIFSQ-LSRAKKKSKL 60
Query: 843 DSDE 846
++ E
Sbjct: 61 NNGE 64
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase,
nonhomologous END joining (NHEJ), DNA damage, DNA
repair, DNA replication, DNA synthesis; HET: DNA; NMR
{Homo sapiens}
Length = 106
Score = 28.4 bits (63), Expect = 3.2
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 550 THLVCPTCSGSKYNAALK----WGFPS----VNKKWLLECARTGKRVSEQQYL 594
TH+V G Y AL+ P V WL C + + V +
Sbjct: 52 THIV--VDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFS 102
>1s9u_A Putative component of anaerobic dehydrogenases; structural
genomics, anaerobic dehydrogenases component, PSI
structure initiative; 1.38A {Salmonella typhimurium}
SCOP: a.184.1.1 PDB: 3efp_A 3cw0_A
Length = 207
Score = 29.6 bits (66), Expect = 3.4
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 25/139 (17%)
Query: 127 DKGNLEWLEQLFRQTVGDEKEICRDDFKKILIT--KNEFIDAMHQ-----FAGQSPDDKI 179
+ L Q + + + K +++ Q F G P
Sbjct: 29 ESHETAPLVQALLNDDWQAQWPLDAEALAPVAAMFKTHSEESLPQAWQRLFIG--PYALP 86
Query: 180 KFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSE---EQIDHL-----TMALFEDAD 231
+ LD + ++ + R M ENG+QF E DH A + D
Sbjct: 87 SPPWGSVWLDRESVLFGDSTLAL-RQWMRENGIQFEMQQNEPEDHFGSLLLLAAWLAEND 145
Query: 232 SENRGAITYESLKNQLEKH 250
+ L H
Sbjct: 146 RH-------HECEQLLAWH 157
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 30.2 bits (68), Expect = 3.5
Identities = 10/65 (15%), Positives = 17/65 (26%)
Query: 76 YVHTNGFYRPSPRSGFDKGNLEWLEQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEWLE 135
V GF S G N + + + T+ V + G+
Sbjct: 180 PVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSR 239
Query: 136 QLFRQ 140
L +
Sbjct: 240 ILLEE 244
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 29.5 bits (67), Expect = 4.3
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 192 GLIQHKELQHVMRACMEE-------NGMQFSEEQIDHLTMALFEDADSENR 235
++ + E++ + R + + G+ FSE+ +D M +++ E
Sbjct: 188 AIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDT-IMTIYQGYPDEMG 237
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region;
endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae}
Length = 79
Score = 27.8 bits (61), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 724 PTREERKQWEKLMDNLSKNCQKLSANNK-VEAWVNENEL 761
PTR+ W + DN++K CQ ++NK + W E L
Sbjct: 40 PTRDLLCPWYEECDNITKVCQLHDSSNKKFDQWYKEQYL 78
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 28.4 bits (63), Expect = 5.6
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLT 223
++ + + D D DG I+ +E +R E+ + + + HL
Sbjct: 17 LQTIHKQMDDDKDGGIEVEESDEFIR---EDMKYKDATNKHSHLH 58
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.7 bits (66), Expect = 5.7
Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 39/172 (22%)
Query: 100 EQLFRQTVAYTSLRIHHNLVCLPRSGFDKGNLEWLEQLFRQTVGDEKEICRDDFKKILIT 159
+ + A HH++ + +LF Q GD+ E+ + IL
Sbjct: 699 FSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDMEVSATELMNIL-N 757
Query: 160 KNEFIDAMHQFAGQSPD--------------------------DKIKF---LFRVYDLDG 190
K + G D + IK +++ ++ D
Sbjct: 758 KVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDR 817
Query: 191 DGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAITYES 242
G I E + E G + + I + + + S+ G + +++
Sbjct: 818 SGTIGSNE----LPGAFEAAGFHLN-QHIYSMIIRRY----SDETGNMDFDN 860
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 29.3 bits (65), Expect = 6.1
Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 2/79 (2%)
Query: 64 WYSSQYGHFTPCYVHTNGFYRPSPRSGFDKGN-LEWLEQLFRQTVA-YTSLRIHHNLVCL 121
+ PR+ L W+++ Y + H+ + +
Sbjct: 133 IFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLVAGHYPVWSI 192
Query: 122 PRSGFDKGNLEWLEQLFRQ 140
G ++ L L
Sbjct: 193 AEHGPTHCLVKQLLPLLTT 211
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 27.4 bits (61), Expect = 6.6
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 138 FRQTVGDEKEICRDDFKKILITKNEFIDAMHQFAGQSPDDKIKFLFRVYDLDGDGLI 194
F + GD+ + ++D + ++ + EF + Q + + + D DG +
Sbjct: 15 FHKFAGDKGYLTKEDLRVLM--EKEFPGFL---ENQKDPLAVDKIMKDLDQCRDGKV 66
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.5 bits (64), Expect = 7.9
Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 763 AQARTPNSGQRTTNNSERTPSQNNPSSQRIANNPSNERTPSQTNISSQAKSSQASQPSDL 822
A P Q + P + + P++ +++ ++ +Q ++L
Sbjct: 12 ATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAEL 71
Query: 823 VKTIDELNQQLSRA-------KSRTSRDSDE 846
+ E+ + R + RT ++ +
Sbjct: 72 EAKLSEMEHRYLRLYADFENFRRRTRQEMEA 102
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 28.7 bits (63), Expect = 8.8
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 179 IKFLFRVYDLDGDGLIQHKELQHVMRACMEENGMQFSEEQIDHLTMALFEDADSENRGAI 238
I R D + D + KEL+ ++ + + + D +F + D ++
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLK--------ELNIQVDDGYARKIFRECDHSQTDSL 64
Query: 239 TYE 241
E
Sbjct: 65 EDE 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,551,824
Number of extensions: 731018
Number of successful extensions: 2085
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 409
Length of query: 864
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 762
Effective length of database: 3,853,851
Effective search space: 2936634462
Effective search space used: 2936634462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)