BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8383
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/346 (66%), Positives = 265/346 (76%), Gaps = 25/346 (7%)
Query: 50 RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
R + K RPK++ KRL +KFR EEGLDYGGVAREWLYLLSHE LNP YGLFQYSR+D YTL
Sbjct: 40 RQVXKXRPKDLWKRLXIKFRGEEGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTL 99
Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
QINPDS VNPEHLSYFHF GRI G AVFHGHYIDGGFT PFYK LL K I
Sbjct: 100 QINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGGFTLPFYK----------QLLGKSI 149
Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
TL+D E VDP+LH SL WILEN ++ VLD TF VE N++G + HELK GK I V E+
Sbjct: 150 TLDDXELVDPDLHNSLVWILENDITG-VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEE 208
Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
NKKEYVRLYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL+I GL ID++D
Sbjct: 209 NKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVND 268
Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCST--------------GAAGPR 335
WK +TRLKHCT D+ +VKWFW+ VE + EE RARLLQ T GAAGPR
Sbjct: 269 WKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR 328
Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
LFTIH D+ ++NLPKAHTCFNRID+P Y+SY+KLY+KL A+EET
Sbjct: 329 LFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEET 374
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/345 (48%), Positives = 226/345 (65%), Gaps = 26/345 (7%)
Query: 52 IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111
IM+ P++++KRLM+KF EEGLDYGGV+RE+ +LLSHEM NP Y LF+YS DNYT+QI
Sbjct: 92 IMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQI 151
Query: 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITL 171
NP+SG+NPEHL+YF F GR++G+ VFH ++D F YKM+L K + L
Sbjct: 152 NPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFF----------VGALYKMMLRKKVVL 201
Query: 172 EDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNK 231
+D+EGVD E++ SL W+LEN++ VLD TF+ + FG + +LK G++I+VT+ NK
Sbjct: 202 QDMEGVDAEVYNSLNWMLENSIDG-VLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNK 260
Query: 232 KEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWK 291
KEYV LY WR + +++QF A GF E++P L+ FDERELEL+IGG+ IDI DWK
Sbjct: 261 KEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWK 320
Query: 292 QHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPRLF 337
+HT + V++WFW+ V + E RARLLQ +TG + GPR F
Sbjct: 321 KHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRF 380
Query: 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETL 382
TI LPK+HTCFNR+DLP Y Y + KL+ AVEET+
Sbjct: 381 TIEKA-GEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETI 424
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 328 bits (841), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 226/344 (65%), Gaps = 25/344 (7%)
Query: 52 IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111
IM ++P ++R+RL V FR EEGLDYGG+AREW +LLSHE+LNP Y LF+Y+ ++NY LQI
Sbjct: 41 IMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQI 100
Query: 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITL 171
NP S +NP+HLSYF F GR I +A+FHG +ID GF+ PFYK +L+K +T+
Sbjct: 101 NPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYK----------RMLSKKLTI 150
Query: 172 EDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNK 231
+D+E +D E + SL WI +N + L+ F+V++ G + H+LK GG +I VTE+NK
Sbjct: 151 KDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENK 210
Query: 232 KEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWK 291
EY+ L WRF RG+++Q A GF E+VP+ L+ FDE+ELE+++ G+ +D+ DW+
Sbjct: 211 DEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQ 270
Query: 292 QHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPRLF 337
++T +H T ++ + WFWQ V+ E+R RLLQ TG GP+ F
Sbjct: 271 RNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKF 330
Query: 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
I + LP++HTCFNR+DLP Y SY++L +KL A+EET
Sbjct: 331 CIEKVGKDT-WLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 328 bits (841), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 231/351 (65%), Gaps = 29/351 (8%)
Query: 47 TFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDN 106
++ R++ R ++ RL ++F E+GLDYGGVAREW +L+S EM NP YGLF+YS DN
Sbjct: 42 SYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDN 101
Query: 107 YTLQINPDSGV-NPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLL 165
YTLQINP+SG+ N +HLSYF F GR+ G+AV+HG +DG F PFYK M+L
Sbjct: 102 YTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYK----------MML 151
Query: 166 NKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQ 225
+KPITL D+E VD E + SL WILEN + LD F ++ FG HELK GG +I
Sbjct: 152 HKPITLHDMESVDSEYYNSLRWILENDPTE--LDLRFIIDEELFGQTHQHELKNGGSEIV 209
Query: 226 VTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSI 285
VT NKKEY+ L + WRF+ I++Q A ++GF E++P L++ FDE ELEL++ GL +
Sbjct: 210 VTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV 269
Query: 286 DIHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA------------ 332
D++DW++HT+ K+ +++ V++WFW+ V E R RLLQ TG +
Sbjct: 270 DVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYG 329
Query: 333 --GPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
GP+ FT+ +P + LP+AHTCFNR+DLP Y+S+++L+DKL A+E T
Sbjct: 330 SNGPQSFTVEQWGTP-EKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENT 379
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 218/344 (63%), Gaps = 25/344 (7%)
Query: 52 IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111
IM P+++R+RL V F EEGLDYGGVAREW +LLSHE+ NP Y LF+Y+ +DNY LQI
Sbjct: 60 IMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVSNPMYCLFEYAGKDNYCLQI 119
Query: 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITL 171
NP S +NP+HL YF F GR I +A+FHG +ID GF+ PFYK +LNKP+ L
Sbjct: 120 NPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYK----------RILNKPVGL 169
Query: 172 EDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNK 231
+D+E +DPE + SL W+ EN + L+ F+V+ G +K H+LK G +I VTE+NK
Sbjct: 170 KDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENK 229
Query: 232 KEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWK 291
+EY+R+ WR RG+E+Q A +GF EI+P L+ FD +ELE+++ G+ ID++DW+
Sbjct: 230 EEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQ 289
Query: 292 QHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPRLF 337
+H + + + WFWQ V+ E R RLLQ TG GP+ F
Sbjct: 290 RHAIYRRYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKF 349
Query: 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
I + LP++HTCFNR+DLP Y SY++L +KL A+EET
Sbjct: 350 CIEKV-GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 392
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 227/351 (64%), Gaps = 29/351 (8%)
Query: 47 TFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDN 106
++ R++ RP ++ RL ++F +E+GLDYGGVAREW +LLS EM NP YGLF+YS DN
Sbjct: 41 SYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDN 100
Query: 107 YTLQINPDSGV-NPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLL 165
YTLQINP+SG+ N +HLSYF F GR+ G+AVFHG +DG F PFYK M+L
Sbjct: 101 YTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYK----------MML 150
Query: 166 NKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQ 225
K ITL D+E VD E + SL WILEN + LD F ++ +FG +LK G +I
Sbjct: 151 GKQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIM 208
Query: 226 VTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSI 285
VT +NK+EY+ L + WRF+ +++Q A +GFTE++PI L++ FDE ELEL++ GL +
Sbjct: 209 VTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV 268
Query: 286 DIHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA------------ 332
D++DW+QH+ K+ + PV++WFW+ V E R RLLQ TG +
Sbjct: 269 DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYG 328
Query: 333 --GPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
GP+LFTI SP + LP+AHT FNR+DLP Y++++ L +KL AVE
Sbjct: 329 SNGPQLFTIEQWGSP-EKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENA 378
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 227/351 (64%), Gaps = 29/351 (8%)
Query: 47 TFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDN 106
++ R++ RP ++ RL ++F +E+GLDYGGVAREW +LLS EM NP YGLF+YS DN
Sbjct: 41 SYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDN 100
Query: 107 YTLQINPDSGV-NPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLL 165
YTLQINP+SG+ N +HLSYF F GR+ G+AVFHG +DG F PFYK M+L
Sbjct: 101 YTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYK----------MML 150
Query: 166 NKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQ 225
K ITL D+E VD E + SL WILEN + LD F ++ +FG +LK G +I
Sbjct: 151 GKQITLNDMESVDSEYYNSLKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIM 208
Query: 226 VTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSI 285
VT +NK+EY+ L + WRF+ +++Q A +GFTE++PI L++ FDE ELEL++ GL +
Sbjct: 209 VTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV 268
Query: 286 DIHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA------------ 332
D++DW+QH+ K+ + PV++WFW+ V E R RLLQ TG +
Sbjct: 269 DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYG 328
Query: 333 --GPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
GP+LFTI SP + LP+AHT FNR+DLP Y++++ L +KL AVE
Sbjct: 329 SNGPQLFTIEQWGSP-EKLPRAHTSFNRLDLPPYETFEDLREKLLMAVENA 378
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/349 (46%), Positives = 222/349 (63%), Gaps = 29/349 (8%)
Query: 47 TFERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDN 106
++ R+ RP ++ RL ++F +E+GLDYGGVAREW +LLS E NP YGLF+YS DN
Sbjct: 56 SYRRIXSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEXFNPYYGLFEYSATDN 115
Query: 107 YTLQINPDSGV-NPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLL 165
YTLQINP+SG+ N +HLSYF F GR+ G+AVFHG +DG F PFYK L
Sbjct: 116 YTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXX----------L 165
Query: 166 NKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQ 225
K ITL D E VD E + SL WILEN + LD F ++ +FG +LK G +I
Sbjct: 166 GKQITLNDXESVDSEYYNSLKWILENDPTE--LDLXFCIDEENFGQTYQVDLKPNGSEIX 223
Query: 226 VTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSI 285
VT +NK+EY+ L + WRF+ +++Q A +GFTE++PI L++ FDE ELEL+ GL +
Sbjct: 224 VTNENKREYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDV 283
Query: 286 DIHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA------------ 332
D++DW+QH+ K+ + PV++WFW+ V E R RLLQ TG +
Sbjct: 284 DVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYG 343
Query: 333 --GPRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVE 379
GP+LFTI SP + LP+AHTCFNR+DLP Y++++ L +KL AVE
Sbjct: 344 SNGPQLFTIEQWGSP-EKLPRAHTCFNRLDLPPYETFEDLREKLLXAVE 391
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 195/345 (56%), Gaps = 24/345 (6%)
Query: 50 RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
R + + P+EM+ RL + F EEG D GG+ REW ++S EM NP Y LF+ S D T
Sbjct: 46 RELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 105
Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
INP S NP HLSYF F GRI+ AV+ ++ FT FYK +L K +
Sbjct: 106 TINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYK----------HILGKSV 155
Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
D+E D ++ L ++LEN +S D TF+ EV FGV +V +LK G +I VTE+
Sbjct: 156 RYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEE 215
Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
NKKEYV L R I +Q A +GF EI+P L+ F E+ELEL+I GL +IDI D
Sbjct: 216 NKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDD 275
Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPR 335
K +T S++ ++WFW+ + S+ + RA+ LQ TG + G +
Sbjct: 276 LKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQ 335
Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEE 380
F IH D +D LP AHTCFN++DLP Y+S++KL L A++E
Sbjct: 336 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE 380
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 195/346 (56%), Gaps = 24/346 (6%)
Query: 50 RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
R + + P+EM+ RL + F EEG D GG+ REW ++S EM NP Y LF+ S D T
Sbjct: 63 RELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
INP S NP HLSYF F GRI+ AV+ ++ FT FYK +L K +
Sbjct: 123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYK----------HILGKSV 172
Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
D+E D ++ L ++LEN +S D TF+ EV FGV +V +LK G +I VTE+
Sbjct: 173 RYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEE 232
Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
NKKEYV L R I +Q A +GF EI+P L+ F E+ELEL+I GL +IDI D
Sbjct: 233 NKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDD 292
Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPR 335
K +T S++ ++WFW+ + S+ + RA+ LQ TG + G +
Sbjct: 293 LKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQ 352
Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
F IH D +D LP AHTCFN++DLP Y+S++KL L A++E
Sbjct: 353 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEA 398
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 182/342 (53%), Gaps = 31/342 (9%)
Query: 51 LIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQ 110
+I P +++K+L V+F E+G+D GGV++E+ L+ E+ NP G+F Y E
Sbjct: 25 MIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYD-ESTKLFW 83
Query: 111 INPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPIT 170
NP S E F G ++G+A+++ +D F Y+ L+ K T
Sbjct: 84 FNPSSF---ETEGQFTLIGIVLGLAIYNNCILDVHF----------PMVVYRKLMGKKGT 130
Query: 171 LEDIEGVDPELHRSLTWIL--ENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTE 228
D+ P L++SL +L E + +D++ T + + FG +++LK G I +T
Sbjct: 131 FRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITN 190
Query: 229 DNKKEYVRLYVNWRFMRGIEQQFLALQKGF---TEIVPI-HLLRPFDERELELVIGGLTS 284
+N+KE+V LY ++ + +E+QF A ++GF T P+ +L RP E+EL+I G +
Sbjct: 191 ENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRP---EEIELLICGSRN 247
Query: 285 IDIHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTG------AAGPRLF 337
+D ++ T T D+ +++ FW+IV S+++E + LQ +TG +L
Sbjct: 248 LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLK 307
Query: 338 TIHATDSP-SDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAV 378
I A + P ++ LP +HTCFN + LP Y S +KL ++L +A+
Sbjct: 308 MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAI 349
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 307 KWFWQIVESYSEEMRARLLQCSTGAAGPRL------------FTIHATDSPSDNLPKAHT 354
+WFW IVE S R L+ T + P L TI D +LP A+T
Sbjct: 31 RWFWSIVEKMSMTERQDLVYFWTSS--PSLPASEEGFQPMPSITIRPPDD--QHLPTANT 86
Query: 355 CFNRIDLPNYDSYQKLYDKLSQAVE 379
C +R+ +P Y S Q L KL A++
Sbjct: 87 CISRLYVPLYSSKQILKQKLLLAIK 111
>pdb|2ZWI|A Chain A, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
pdb|2ZWI|B Chain B, Crystal Structure Of AlphaBETA-Galactoside Alpha-2,3-
Sialyltransferase From A Luminous Marine Bacterium,
photobacterium Phosphoreum
Length = 373
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 165 LNKPITLEDIEGV----DPELHRSL-TWILENTLSNDVLDTTFAVEVNSFGVLKVHELKG 219
+N LE I G PEL +SL + IL N + +++ V+ ++K E G
Sbjct: 41 INDETLLESINGSFFKNRPELIKSLDSMILTNEIKKVIINGNTLWAVDVVNIIKSIEALG 100
Query: 220 GGKDIQVT--EDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFD 271
+I++ +D EYVRLY R ++ ++L K + I+ +PFD
Sbjct: 101 KKTEIELNFYDDGSAEYVRLYDFSRLPESEQEYKISLSKDNIQ-SSINGTQPFD 153
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 110 QINPDSG--------VNPEHLSYFHFA--GRIIGIAVFHGHYIDG--GFTTPFYKISRVT 157
+INP S VN E S+ F+ +I I ++H GF + Y T
Sbjct: 126 KINPSSSPLTLSPVDVNHEFTSHHLFSTINELIDIGIYHVEEKAALLGFPSQGY-----T 180
Query: 158 TPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGV 211
+ +Y L P+T ED+ + +L L + ENT N V + +F + V S V
Sbjct: 181 SAYY---LGLPVTPEDMALLKEQLFAELAILPENTRINKVGENSFQIWVASENV 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,439,784
Number of Sequences: 62578
Number of extensions: 583935
Number of successful extensions: 1149
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 29
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)