Query psy8383
Match_columns 421
No_of_seqs 168 out of 1451
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 17:15:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 100.0 3.6E-87 1.2E-91 667.5 30.4 341 35-386 22-379 (380)
2 3h1d_A E3 ubiquitin-protein li 100.0 8E-86 2.7E-90 659.8 27.3 342 35-386 45-404 (405)
3 1nd7_A WW domain-containing pr 100.0 1.1E-84 3.9E-89 648.8 31.4 337 35-382 21-374 (374)
4 3olm_A E3 ubiquitin-protein li 100.0 1E-84 3.5E-89 658.2 29.1 341 34-386 71-428 (429)
5 2oni_A E3 ubiquitin-protein li 100.0 3.7E-83 1.3E-87 640.5 28.9 339 29-380 34-392 (392)
6 1c4z_A E6AP, ubiquitin-protein 100.0 9.7E-83 3.3E-87 630.9 28.9 337 36-386 4-357 (358)
7 3pt3_A E3 ubiquitin-protein li 100.0 5.5E-32 1.9E-36 223.9 9.6 103 283-386 2-117 (118)
8 3pt3_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 90.0 1.4 34 388-421 79-112 (118)
9 1nd7_A WW domain-containing pr 98.2 3.2E-07 1.1E-11 90.9 2.7 33 389-421 340-372 (374)
10 2oni_A E3 ubiquitin-protein li 98.2 3E-07 1E-11 91.6 2.1 33 389-421 360-392 (392)
11 1zvd_A SMAD ubiquitination reg 98.2 4E-07 1.4E-11 90.4 2.2 33 389-421 341-373 (380)
12 1c4z_A E6AP, ubiquitin-protein 98.2 2.8E-07 9.7E-12 90.7 0.5 34 388-421 318-351 (358)
13 3h1d_A E3 ubiquitin-protein li 98.1 4.8E-07 1.6E-11 90.3 1.8 33 389-421 365-397 (405)
14 3olm_A E3 ubiquitin-protein li 98.1 6E-07 2E-11 90.4 2.1 34 388-421 389-422 (429)
15 1l6x_B Minimized B-domain of p 30.2 62 0.0021 19.7 3.3 22 305-326 5-28 (34)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-87 Score=667.54 Aligned_cols=341 Identities=68% Similarity=1.169 Sum_probs=317.5
Q ss_pred CCCceEEEcChHHHHHH---HhccCcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCcccccc
Q psy8383 35 LRGRPLSILSNGTFERL---IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111 (421)
Q Consensus 35 ~~~~~l~V~R~~i~~~~---~~~~~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~~ 111 (421)
..+++|+|+|++|++++ +....+++++++|+|+|.||+|+|+|||+||||+++++|+++|+++||..++++.+.+++
T Consensus 22 ~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~ 101 (380)
T 1zvd_A 22 AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQI 101 (380)
T ss_dssp SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEE
T ss_pred CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCCeeccCCCCeeecc
Confidence 45679999999999965 455678889999999999999999999999999999999999999999998888888899
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHhc
Q psy8383 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILEN 191 (421)
Q Consensus 112 ~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~~ 191 (421)
||++..+++++++|+++|++||+||++|.+++++|+++ |||+|+|.+++++||+++||+++++|++|+++
T Consensus 102 np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~----------f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~ 171 (380)
T 1zvd_A 102 NPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLP----------FYKQLLGKSITLDDMELVDPDLHNSLVWILEN 171 (380)
T ss_dssp CTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHH----------HHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS
T ss_pred CchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHH----------HHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhC
Confidence 99988888999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCCC
Q psy8383 192 TLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFD 271 (421)
Q Consensus 192 ~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~fs 271 (421)
+.+ +.++++|+++.+.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|.++|++|+
T Consensus 172 d~~-~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~ 250 (380)
T 1zvd_A 172 DIT-GVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFD 250 (380)
T ss_dssp CCT-TTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCC
T ss_pred Ccc-ccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCC
Confidence 877 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCC--------------CCCc
Q psy8383 272 ERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAG--------------PRLF 337 (421)
Q Consensus 272 ~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~--------------p~~~ 337 (421)
|+||+.++||.++||+++|+++|.|.||++++++|+|||+++++||+++|++||+|+||+.. |+.|
T Consensus 251 ~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f 330 (380)
T 1zvd_A 251 EKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLF 330 (380)
T ss_dssp HHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEECCE
T ss_pred HHHHHHhhCCCCCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999821 2357
Q ss_pred eEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCccccc
Q psy8383 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLY 386 (421)
Q Consensus 338 ~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~ 386 (421)
+|+..+.++++||+||||||+|+||.|+|+|+|++||++||++++||++
T Consensus 331 ~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l 379 (380)
T 1zvd_A 331 TIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAV 379 (380)
T ss_dssp EEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC------
T ss_pred EEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCc
Confidence 8886677889999999999999999999999999999999999999975
No 2
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=8e-86 Score=659.77 Aligned_cols=342 Identities=42% Similarity=0.720 Sum_probs=309.1
Q ss_pred CCCceEEEcChHHHHHHHhcc---CcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCcccccc
Q psy8383 35 LRGRPLSILSNGTFERLIMKM---RPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111 (421)
Q Consensus 35 ~~~~~l~V~R~~i~~~~~~~~---~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~~ 111 (421)
..+++|+|+|++|+++++.++ ++++++++|+|+|.||+|+|+||++||||+++++|+++|+++||..++++++.+++
T Consensus 45 ~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~ 124 (405)
T 3h1d_A 45 KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124 (405)
T ss_dssp CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEE
T ss_pred CCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECCCCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEee
Confidence 457899999999999766554 57789999999999999999999999999999999999999999999888888889
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHhc
Q psy8383 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILEN 191 (421)
Q Consensus 112 ~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~~ 191 (421)
||.+..+++++++|+++|++||+||+++.+++++|+++ |||+|+|.+++++||+++||+++++|++|+++
T Consensus 125 np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~----------f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~ 194 (405)
T 3h1d_A 125 NPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS----------FYKHILGKSVRYTDMESEDYHFYQGLVYLLEN 194 (405)
T ss_dssp CCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHH----------HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHS
T ss_pred CCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHH----------HHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcC
Confidence 99887888999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCCC
Q psy8383 192 TLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFD 271 (421)
Q Consensus 192 ~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~fs 271 (421)
+.++-.++++|+++.+.+|...++||+|||++++||.+||.+||+++++|+++.+++.|++||++||++|+|.++|++|+
T Consensus 195 ~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~ 274 (405)
T 3h1d_A 195 DVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFT 274 (405)
T ss_dssp CGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSC
T ss_pred ChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCC
Confidence 87743578899887777787778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCCC--------------CCc
Q psy8383 272 ERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGP--------------RLF 337 (421)
Q Consensus 272 ~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~p--------------~~~ 337 (421)
|+||+.++||.++||+++|+++|.|.||+.++++|+|||+++++||+++|++||+|+||+... +.|
T Consensus 275 ~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f 354 (405)
T 3h1d_A 275 EQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKF 354 (405)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCE
T ss_pred HHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999998221 246
Q ss_pred eEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhc-Cccccc
Q psy8383 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEE-TLTCLY 386 (421)
Q Consensus 338 ~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~-~~~f~~ 386 (421)
+|+..+.++++||+||||||+|+||.|+|+|+|++||.+||++ +.||++
T Consensus 355 ~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e~~~GFgl 404 (405)
T 3h1d_A 355 QIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGL 404 (405)
T ss_dssp EEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC-------
T ss_pred EEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence 6666666789999999999999999999999999999999998 567775
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=1.1e-84 Score=648.79 Aligned_cols=337 Identities=47% Similarity=0.901 Sum_probs=314.9
Q ss_pred CCCceEEEcChHHHHHH---HhccCcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCcccccc
Q psy8383 35 LRGRPLSILSNGTFERL---IMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQI 111 (421)
Q Consensus 35 ~~~~~l~V~R~~i~~~~---~~~~~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~~ 111 (421)
.++++++|+|+++++++ +....+.+++++++|+|.||+|+|+|||+||||+++++|+++|+++||..++++++.+++
T Consensus 21 ~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~~~~~~~~ 100 (374)
T 1nd7_A 21 PSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQI 100 (374)
T ss_dssp SSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECCCCCcCCCccHHHHHHHHHHHHcCCccccccccCCCCceecc
Confidence 46789999999999965 455677789999999999999999999999999999999999999999998888888889
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHhc
Q psy8383 112 NPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILEN 191 (421)
Q Consensus 112 ~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~~ 191 (421)
||.+..+++++++|+++|++||+||++|.+++++|+++ |||+|+|.+++++||+++||+++++|++|+++
T Consensus 101 ~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~----------f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~ 170 (374)
T 1nd7_A 101 NPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLP----------FYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN 170 (374)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHH----------HHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHH----------HHHHHhCCCCCHHHHHHhhHHHHHhhhhhccC
Confidence 99887788899999999999999999999999999998 99999999999999999999999999999998
Q ss_pred CCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCCC
Q psy8383 192 TLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFD 271 (421)
Q Consensus 192 ~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~fs 271 (421)
+.++-.++++|+++.+.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|.++|++|+
T Consensus 171 ~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~ 250 (374)
T 1nd7_A 171 NIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFD 250 (374)
T ss_dssp CSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCC
T ss_pred ChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCC
Confidence 87743589999999888998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCC--------------CCCc
Q psy8383 272 ERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAG--------------PRLF 337 (421)
Q Consensus 272 ~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~--------------p~~~ 337 (421)
|+||+.++||.++||+++|+++|.|.||++++++|+|||+++++||+++|++||+|+||+.. |..|
T Consensus 251 ~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f 330 (374)
T 1nd7_A 251 EKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKF 330 (374)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCE
T ss_pred HHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999822 2346
Q ss_pred eEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCc
Q psy8383 338 TIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETL 382 (421)
Q Consensus 338 ~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~ 382 (421)
+|+..+ ++++||+||||||+|+||.|+|+|+|++||++||+|+.
T Consensus 331 ~I~~~~-~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 331 CIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp EEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred EEEeCC-CCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 666543 57899999999999999999999999999999999874
No 4
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-84 Score=658.17 Aligned_cols=341 Identities=49% Similarity=0.915 Sum_probs=309.0
Q ss_pred CCCCceEEEcChHHHHHHHh---ccCcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCccccc
Q psy8383 34 RLRGRPLSILSNGTFERLIM---KMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQ 110 (421)
Q Consensus 34 ~~~~~~l~V~R~~i~~~~~~---~~~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~~ 110 (421)
...+++|+|+|++|+++++. ...+.+++++|+|+|.||+|+|+|||+||||+++++|+++|+++||..+.++++.++
T Consensus 71 ~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~ 150 (429)
T 3olm_A 71 LPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQ 150 (429)
T ss_dssp CSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSSCCEE
T ss_pred CCCceEEEEecchhHHHHHHHHHhcChHhcCcceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEe
Confidence 34578999999999996655 456778999999999999999999999999999999999999999999888888889
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHHh
Q psy8383 111 INPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILE 190 (421)
Q Consensus 111 ~~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~~ 190 (421)
+||.+..+++++++|+++|++||+||++|.+++++|+++ |||+|+|.+++++||+++||+++++|++|++
T Consensus 151 ~np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~----------f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~ 220 (429)
T 3olm_A 151 INPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGA----------LYKMMLRKKVVLQDMEGVDAEVYNSLNWMLE 220 (429)
T ss_dssp ECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHH----------HHHHHTTCCCCHHHHHHHCHHHHHHHHHHTT
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHH----------HHHhhcCCCCCHHHHHHHhHHHHHHHHHHHh
Confidence 999988888999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cCCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhcccccccccccCCC
Q psy8383 191 NTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPF 270 (421)
Q Consensus 191 ~~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l~~f 270 (421)
++.+ +.++++|+++.+.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|.++|++|
T Consensus 221 ~d~~-~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F 299 (429)
T 3olm_A 221 NSID-GVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVF 299 (429)
T ss_dssp SCCT-TTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTS
T ss_pred CCHH-HhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcC
Confidence 8877 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCcccccccceEecCCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCC--------------CCC
Q psy8383 271 DERELELVIGGLTSIDIHDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAG--------------PRL 336 (421)
Q Consensus 271 s~~eL~~licG~~~id~~~l~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~--------------p~~ 336 (421)
+|+||+.++||.++||+++|+++|.|.||+.++++|+|||+++++||+++|++||+|+||+.. |..
T Consensus 300 ~~~ELe~Li~G~~~id~~dl~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~ 379 (429)
T 3olm_A 300 DERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRR 379 (429)
T ss_dssp CHHHHHHHHTCBCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECC
T ss_pred CHHHHHHHhcCCCCCCHHHHHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999822 123
Q ss_pred ceEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCccccc
Q psy8383 337 FTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLY 386 (421)
Q Consensus 337 ~~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~ 386 (421)
|+|+..+ .+++||+||||||+|+||.|+|+|+|++||.+||+++.||+.
T Consensus 380 f~I~~~~-~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg~ 428 (429)
T 3olm_A 380 FTIEKAG-EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFGQ 428 (429)
T ss_dssp EEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC----
T ss_pred EEEeeCC-CCCCCCccccccCEeECCCCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6665443 578999999999999999999999999999999999999864
No 5
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=3.7e-83 Score=640.51 Aligned_cols=339 Identities=48% Similarity=0.909 Sum_probs=309.3
Q ss_pred ccCCCCCCCceEEEcChHHHHHHHhcc---C-cccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccC
Q psy8383 29 RRGGARLRGRPLSILSNGTFERLIMKM---R-PKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSRE 104 (421)
Q Consensus 29 ~~~~~~~~~~~l~V~R~~i~~~~~~~~---~-~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~ 104 (421)
++......+++++|+|++|+++++.++ . +..++++++|+|.||+|+|+|||+||||+++++|+++|+++||..+++
T Consensus 34 ~~~~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~ 113 (392)
T 2oni_A 34 KKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT 113 (392)
T ss_dssp CCCSSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESST
T ss_pred hcccCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECCCccccCCccHHHHHHHHHHHHcCcccCCceecCC
Confidence 333344668999999999999766544 3 345788999999999999999999999999999999999999999888
Q ss_pred CccccccCCCCC-CChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHH
Q psy8383 105 DNYTLQINPDSG-VNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHR 183 (421)
Q Consensus 105 ~~~~~~~~p~~~-~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~ 183 (421)
+++.+++||.+. .+++++++|+++|++||+||++|.+++++|+++ |||+|+|.+++++||+++||++++
T Consensus 114 ~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~----------f~K~llg~~~~l~Dl~~~Dp~l~~ 183 (392)
T 2oni_A 114 DNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRP----------FYKMMLGKQITLNDMESVDSEYYN 183 (392)
T ss_dssp TCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHH----------HHHHHTTCCCCTHHHHTTCHHHHH
T ss_pred CCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHH----------HHHHHhCCCCCHHHHHHhCHHHHH
Confidence 888888999764 356789999999999999999999999999988 999999999999999999999999
Q ss_pred hhhHHHhcCCCcccccceeEEEeecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhccccccc
Q psy8383 184 SLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVP 263 (421)
Q Consensus 184 sL~~l~~~~~~~~~~~l~F~~~~~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip 263 (421)
+|++|++++.+ .++++|+++.+.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|
T Consensus 184 sL~~l~~~d~~--~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip 261 (392)
T 2oni_A 184 SLKWILENDPT--ELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLP 261 (392)
T ss_dssp HHHHHHHSCCG--GGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcCChh--HceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999998765 5899999999899998999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHhCCCCCcccccccceEec-CCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCC---------
Q psy8383 264 IHLLRPFDERELELVIGGLTSIDIHDWKQHTRLK-HCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAG--------- 333 (421)
Q Consensus 264 ~~~l~~fs~~eL~~licG~~~id~~~l~~~~~~~-g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~--------- 333 (421)
.+++++|+|+||+.++||.++||+++|+++|.|. ||++++++|+|||+|+++||+|||++||+||||+..
T Consensus 262 ~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L 341 (392)
T 2oni_A 262 IDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL 341 (392)
T ss_dssp HHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGC
T ss_pred HHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhh
Confidence 9999999999999999999999999999999999 499999999999999999999999999999999822
Q ss_pred -----CCCceEeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhc
Q psy8383 334 -----PRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEE 380 (421)
Q Consensus 334 -----p~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~ 380 (421)
|+.|+|+..+ ++++||+||||||+|+||.|+|+|+|++||++||+|
T Consensus 342 ~~~~gp~~f~I~~~~-~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 342 YGSNGPQLFTIEQWG-SPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp EETTEECCCEEEECS-CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred cccCCCCceEEEeCC-CCCcCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence 2346676543 568999999999999999999999999999999986
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=9.7e-83 Score=630.91 Aligned_cols=337 Identities=29% Similarity=0.542 Sum_probs=302.5
Q ss_pred CCceEEEcChHHHHHHHhcc------CcccccceEEEEEeccccccCCchHHHHHHHHHHHhcCCCCCCCccccCCcccc
Q psy8383 36 RGRPLSILSNGTFERLIMKM------RPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109 (421)
Q Consensus 36 ~~~~l~V~R~~i~~~~~~~~------~~~~l~~~l~V~F~gE~giD~GG~~REff~~l~~el~~~~~~lF~~~~~~~~~~ 109 (421)
+.++++|+|++|+++++.++ ++++++++|+|+|.||+|+|+|||+||||+++++|+++|+++||..++++. .+
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~-~~ 82 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK-LF 82 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT-EE
T ss_pred CeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC-eE
Confidence 57899999999999776543 567899999999999999999999999999999999999999999886554 45
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHHHhcCcccccCCCChhhhhcccchhHHHhhhCCCCCcchhhhcCHHHHHhhhHHH
Q psy8383 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWIL 189 (421)
Q Consensus 110 ~~~p~~~~~~~~l~~f~~lG~llg~al~~~~~l~~~f~~~f~~~~~~~~~f~k~Llg~~~t~~DL~~~D~~l~~sL~~l~ 189 (421)
++||.+.. ..++|+++|++||+||+++.+++++|+++ |||+|+|.+++++||+++||+++++|++|+
T Consensus 83 ~~np~s~~---~~~~f~flG~lig~Al~~~~~ld~~f~~~----------f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~ 149 (358)
T 1c4z_A 83 WFNPSSFE---TEGQFTLIGIVLGLAIYNNCILDVHFPMV----------VYRKLMGKKGTFRDLGDSHPVLYQSLKDLL 149 (358)
T ss_dssp EECTTCCS---CHHHHHHHHHHHHHHHHTTCCCCCCCCHH----------HHHHHTTCCCCHHHHHHHSHHHHHHHHHHH
T ss_pred eeCCcccc---chHHHHhHHHHHHHHHHCCCCcCCcCCHH----------HHHHHhCCCCCHHHHHHhCHHHHHHHHHHH
Confidence 78887643 34689999999999999999999999998 999999999999999999999999999999
Q ss_pred hcCCC-cccccceeEEEe-ecCCceeEEEccCCCcceecCCCcHHHHHHHHHHhHHhhcHHHHHHHHhhccccccccccc
Q psy8383 190 ENTLS-NDVLDTTFAVEV-NSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLL 267 (421)
Q Consensus 190 ~~~~~-~~~~~l~F~~~~-~~~g~~~~~eL~~~G~~~~VT~~N~~eyv~~~~~~~l~~~i~~~~~afr~Gf~~vip~~~l 267 (421)
+++.+ ++.++++|+++. +.+|...++||+|||++++||.+||++||+++++|+++.+++.|++||++||.+|+|...+
T Consensus 150 ~~~~d~~~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L 229 (358)
T 1c4z_A 150 EYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPL 229 (358)
T ss_dssp HCCSCHHHHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCS
T ss_pred hcCCchhhhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchh
Confidence 87532 146899999985 5688888999999999999999999999999999999999999999999999999999888
Q ss_pred C-CCCHHHHHHHHhCCCCCcccccccceEec-CCCCCchHHHHHHHHHhhCCHHHHHHhHhhhcCCCCCC-------Cce
Q psy8383 268 R-PFDERELELVIGGLTSIDIHDWKQHTRLK-HCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPR-------LFT 338 (421)
Q Consensus 268 ~-~fs~~eL~~licG~~~id~~~l~~~~~~~-g~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~p~-------~~~ 338 (421)
. +|+|+||+.++||.++||+++|+++|.|. ||++++++|+|||+++++||+++|++||+|+||+...| .++
T Consensus 230 ~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~~~ 309 (358)
T 1c4z_A 230 KYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMI 309 (358)
T ss_dssp CSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGCCE
T ss_pred hcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccceee
Confidence 6 89999999999999999999999999999 79999999999999999999999999999999994322 256
Q ss_pred EeeCCCCCCCCceeccccCeeecCCCCCHHHHHHHHHHhhhcCccccc
Q psy8383 339 IHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLY 386 (421)
Q Consensus 339 i~~~~~~~~~LP~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~ 386 (421)
|+..+.++++||+||||||+|+||.|+|+|+|++||.+||+++.||++
T Consensus 310 I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl 357 (358)
T 1c4z_A 310 IAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGM 357 (358)
T ss_dssp EEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-----
T ss_pred eecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 655455678999999999999999999999999999999999999986
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.97 E-value=5.5e-32 Score=223.93 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=73.7
Q ss_pred CCCcccccccceEecCCC-CCc----hHHHHHHHHHhhCCHHHHHHhHhhhcCCCCCCC----c----eEeeCCCCCCCC
Q psy8383 283 TSIDIHDWKQHTRLKHCT-SDT----PVVKWFWQIVESYSEEMRARLLQCSTGAAGPRL----F----TIHATDSPSDNL 349 (421)
Q Consensus 283 ~~id~~~l~~~~~~~g~~-~~~----~~i~~Fw~vl~~~s~eer~~fL~F~TGs~~p~~----~----~i~~~~~~~~~L 349 (421)
+-||+++|++||.|.|+. .++ ++|+|||+++++||+++|++||+|+||+...|. | .+.+...++++|
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l~~~~i~~~~~~~L 81 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHL 81 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC------------CEEEEESCCTTSC
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccCCcEEEECCCCCCC
Confidence 468999999999999754 555 899999999999999999999999999943221 1 233335678999
Q ss_pred ceeccccCeeecCCCCCHHHHHHHHHHhhhcCccccc
Q psy8383 350 PKAHTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCLY 386 (421)
Q Consensus 350 P~A~TCf~~L~LP~Yss~e~l~ekL~~AI~~~~~f~~ 386 (421)
|+||||||+|+||.|+|+|+|++||.+||++ .||+|
T Consensus 82 P~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 82 PTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp CEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred ccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 9999999999999999999999999999998 78875
No 8
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=98.77 E-value=1.2e-09 Score=89.98 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=31.4
Q ss_pred ccCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 388 IDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
...|.+|||||+|+||.|+|+|.|++||..||++
T Consensus 79 ~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~ 112 (118)
T 3pt3_A 79 QHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT 112 (118)
T ss_dssp TSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-
T ss_pred CCCccceehhceeECCCCCCHHHHHHHHHHHHHh
Confidence 5569999999999999999999999999999985
No 9
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=98.24 E-value=3.2e-07 Score=90.89 Aligned_cols=33 Identities=48% Similarity=0.764 Sum_probs=31.4
Q ss_pred cCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 389 DTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
..|.+|||||+|+||+|+|+|.|++||..||+|
T Consensus 340 ~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~ 372 (374)
T 1nd7_A 340 WLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE 372 (374)
T ss_dssp SCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHS
T ss_pred cCCEEEcccCEEECCCCCCHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999986
No 10
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=98.22 E-value=3e-07 Score=91.60 Aligned_cols=33 Identities=42% Similarity=0.790 Sum_probs=30.9
Q ss_pred cCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 389 DTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
..|.+|||||+|+||+|+|+|.|++||..||+|
T Consensus 360 ~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 360 KLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp SCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred cCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence 469999999999999999999999999999986
No 11
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=98.19 E-value=4e-07 Score=90.38 Aligned_cols=33 Identities=55% Similarity=0.993 Sum_probs=31.2
Q ss_pred cCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 389 DTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
..|.+|||||+|+||+|+|+|.|++||..||+|
T Consensus 341 ~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~ 373 (380)
T 1zvd_A 341 NLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE 373 (380)
T ss_dssp SCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC
T ss_pred CCCEEecCcCEEECCCCCCHHHHHHHHHHHHHh
Confidence 359999999999999999999999999999986
No 12
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=98.16 E-value=2.8e-07 Score=90.75 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=31.5
Q ss_pred ccCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 388 IDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
...|.+|||||+|+||+|+|+|.|++||..||++
T Consensus 318 ~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~ 351 (358)
T 1c4z_A 318 ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITY 351 (358)
T ss_dssp SCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999974
No 13
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=98.15 E-value=4.8e-07 Score=90.29 Aligned_cols=33 Identities=39% Similarity=0.742 Sum_probs=31.2
Q ss_pred cCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 389 DTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
.-|.+|||||+|+||+|+|+|.|++||..||+|
T Consensus 365 ~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e 397 (405)
T 3h1d_A 365 RLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE 397 (405)
T ss_dssp SCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC
T ss_pred CCccceeccCEeECCCCCCHHHHHHHHHHHHHh
Confidence 459999999999999999999999999999975
No 14
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=98.13 E-value=6e-07 Score=90.45 Aligned_cols=34 Identities=44% Similarity=0.742 Sum_probs=31.6
Q ss_pred ccCCcccchhhhccCCCcccHHHHHHHHHHhhhC
Q psy8383 388 IDTPCRLTCLYRIDLPNYDSYQKLYDKLSQAVEE 421 (421)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (421)
...|.+|||||+|+||+|+|+|.|++||..||+|
T Consensus 389 ~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~ 422 (429)
T 3olm_A 389 QQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE 422 (429)
T ss_dssp TSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCccccccCEeECCCCCCHHHHHHHHHHHHHc
Confidence 3459999999999999999999999999999985
No 15
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=30.22 E-value=62 Score=19.72 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.4
Q ss_pred HHHHHHHHHh--hCCHHHHHHhHh
Q psy8383 305 VVKWFWQIVE--SYSEEMRARLLQ 326 (421)
Q Consensus 305 ~i~~Fw~vl~--~~s~eer~~fL~ 326 (421)
.-..|.+||. .+|+++|-.+++
T Consensus 5 qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 5 CQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 4467999998 799999998875
Done!