RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8383
(421 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 406 bits (1047), Expect = e-141
Identities = 147/343 (42%), Positives = 208/343 (60%), Gaps = 21/343 (6%)
Query: 50 RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
R + K+ +++K L V+F EEG+D GGV RE+ L+S E+ NP YGLF+Y+ +D+ L
Sbjct: 16 RQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLL 75
Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
NP S + +HL F F GR++G A++ G +D F + FYK LL KP+
Sbjct: 76 YPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPF----------SRAFYKKLLGKPL 125
Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNS-FGVLKVHELKGGGKDIQVTE 228
+LED+E +DPEL++SL +L+N D L+ TF +E++S FG ELK GG+DI VT
Sbjct: 126 SLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTN 185
Query: 229 DNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIH 288
+NK+EYV LYV++R +GIE+Q A + GF+E++P LL F ELEL+I G ID+
Sbjct: 186 ENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLE 245
Query: 289 DWKQHTRLKHCTSDT-PVVKWFWQIVESYSEEMRARLLQCSTG---------AAGPRLFT 338
D K++T K S P ++WFW+++ES++ E R + LQ TG A FT
Sbjct: 246 DLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFT 305
Query: 339 IHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
I SP D LP AHTCFN + LP Y S + L +KL A+ E
Sbjct: 306 IRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEG 348
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 375 bits (964), Expect = e-129
Identities = 155/338 (45%), Positives = 215/338 (63%), Gaps = 28/338 (8%)
Query: 59 EMRK-RLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTLQINPDSGV 117
+++K L ++F EEGLD GGV RE+ +LLS E+ NP YGLF+YS ++Y L NP SG
Sbjct: 1 DLKKRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYS-PNDYLLYPNPRSGF 59
Query: 118 -NPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPITLEDIEG 176
N EHLSYF F GR++G A++ +D F PFYK LL KP+TL D+E
Sbjct: 60 ANEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYK----------KLLGKPVTLHDLES 109
Query: 177 VDPELHRSLTWILENTLSNDVLDTTFA-VEVNSFGVLKVHELKGGGKDIQVTEDNKKEYV 235
+DPEL++SL W+L N +++ LD TF+ V + FG +KV ELK GG +I VTE+NKKEYV
Sbjct: 110 LDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYV 169
Query: 236 RLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHDWKQHTR 295
L + +R +GIE+Q A ++GF+E++P +LL+ FD ELEL+I G ID+ D K +T
Sbjct: 170 HLVIEYRLNKGIEKQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTE 229
Query: 296 LKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRL-----------FTIHATD 343
K ++++ +KWFW++VES++ E R +LLQ TG+ RL FTI
Sbjct: 230 YKGGYSANSQTIKWFWEVVESFTNEERRKLLQFVTGS--SRLPVGGFAALSPKFTIRKAG 287
Query: 344 SPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
S + LP AHTCFNR+ LP Y S + L +KL A+ E
Sbjct: 288 SDDERLPTAHTCFNRLKLPPYSSKEILREKLLLAINEG 325
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 381 bits (981), Expect = e-125
Identities = 163/348 (46%), Positives = 217/348 (62%), Gaps = 25/348 (7%)
Query: 49 ERLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYT 108
R IM +++K L ++F EEG+D GG+ REWL+LLS EM NP YGLF+Y ED YT
Sbjct: 529 YREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYT 588
Query: 109 LQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKP 168
L INP S +NPEHLSYF F GR+IG A++ +D F+ FYK LL KP
Sbjct: 589 LPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYK----------KLLGKP 638
Query: 169 ITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTE 228
++L D+E +DPEL+RSL W+L N + +LD TF VE +SFG + EL G++I VT
Sbjct: 639 VSLVDLESLDPELYRSLVWLLNNDIDETILDLTFTVEDDSFGESRTVELIPNGRNISVTN 698
Query: 229 DNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGL-TSIDI 287
+NKKEYV+ V+++ + +E+QF A + GF+EI+P LL+ FDE ELEL+IGG+ IDI
Sbjct: 699 ENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDI 758
Query: 288 HDWKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------G 333
DWK +T T D+P++ WFW+I+ + E RA+LLQ TG + G
Sbjct: 759 DDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDG 818
Query: 334 PRLFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
R FTI + D LP AHTCFNR+ LP Y S +KL KL A+ E
Sbjct: 819 VRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEG 866
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 298 bits (765), Expect = 2e-99
Identities = 121/309 (39%), Positives = 167/309 (54%), Gaps = 26/309 (8%)
Query: 85 YLLSHEMLNPQYGLFQYSREDNYTLQINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDG 144
LLS E+ NP YGLF Y ++ L NP S + F F G +IG A+++G +D
Sbjct: 1 TLLSKELFNPDYGLFFYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDL 60
Query: 145 GFTTPFYKISRVTTPFYKMLLNKPITLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAV 204
F F+K LL KPITLED+E VDPEL+RSL +LE + L TF V
Sbjct: 61 PFPPAFWK----------KLLGKPITLEDLEEVDPELYRSLKSLLELDGDEEELCLTFTV 110
Query: 205 EVNSFGVLKVHELKGGGKDIQVTEDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPI 264
EL G +I VT +NK+EYV LYV++R I++Q A ++GF ++P
Sbjct: 111 SGEG---EGTIELIPNGSNIPVTNENKEEYVNLYVDYRLNESIKKQLEAFREGFYSVIPK 167
Query: 265 HLLRPFDERELELVIGGLTSIDIHDWKQHTRLKH-CTSDTPVVKWFWQIVESYSEEMRAR 323
LL F ELEL+I G ID+ D K++T + ++P +KWFW+++E +++E R +
Sbjct: 168 ELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNSPTIKWFWEVLEEFTQEERRK 227
Query: 324 LLQCSTGAAGPRL---------FTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKL 374
L+ TG+ RL TI D D LP AHTCFNR+ LP Y S + L +KL
Sbjct: 228 FLKFVTGS--SRLPLGGFKKLKITIQRKDDD-DRLPTAHTCFNRLKLPPYSSKEILKEKL 284
Query: 375 SQAVEETLT 383
A+EE
Sbjct: 285 LIAIEEGSE 293
>gnl|CDD|184989 PRK15029, PRK15029, arginine decarboxylase; Provisional.
Length = 755
Score = 31.0 bits (70), Expect = 1.4
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 297 KHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCF 356
+H ++TP+ + ++VE Y + + G +F ++P L +A++
Sbjct: 603 RHYDANTPLAQVMPELVEQYPDTYANMGIH----DLGDTMFAWLKENNPGARLNEAYSGL 658
Query: 357 NRIDLPNYDSYQKLYD 372
++ ++Y + D
Sbjct: 659 PVAEITPREAYNAIVD 674
>gnl|CDD|226368 COG3850, NarQ, Signal transduction histidine kinase,
nitrate/nitrite-specific [Signal transduction
mechanisms].
Length = 574
Score = 29.2 bits (66), Expect = 4.4
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 323 RLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRI--DLPNYDSYQKLYDKLSQAVEE 380
L + G R F TD+ + L FN++ +L +KLY L Q VEE
Sbjct: 180 NQLTSAAQRIGRRQFDQRPTDTGRNELGLLGRAFNQMSGEL------KKLYADLEQRVEE 233
Query: 381 ----------TLTCLY 386
L+ LY
Sbjct: 234 KTRDLEQKNQRLSFLY 249
>gnl|CDD|214790 smart00725, NEAT, NEAr Transporter domain.
Length = 123
Score = 28.1 bits (63), Expect = 4.5
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 200 TTFAVEVNSFGVLKVHELKGGGK--DIQVTEDNKKEYVR 236
T + +N+ K E++ G D++V +K R
Sbjct: 39 TYVTLTLNNSSFWKDFEVEVNGTKVDVEVVSKDKDNDTR 77
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 29.3 bits (66), Expect = 4.8
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 34/124 (27%)
Query: 117 VNPEHLSYF--HFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPF----YKMLLNKPIT 170
VN E +F F R+ I VF + + + +K L + I
Sbjct: 694 VNEELKQFFRPEFLNRLDEIIVFRQLTKN--------DVWEIAEIMLKNLFKRLNEQGIQ 745
Query: 171 LE---DI------EGVDP-----ELHRSLTWILENTLSNDVL------DTTFAVEVNSFG 210
LE I EG +P L R++ +LE+ L+ +VL V+VN
Sbjct: 746 LEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDEK 805
Query: 211 VLKV 214
+K+
Sbjct: 806 EVKI 809
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 28.4 bits (64), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 175 EGVDPE---LHRSLTWILENTLSNDVLDTTFAVE 205
E V P+ +H+ +T S+DVLDT V+
Sbjct: 82 EFVGPDARFVHQGMT-------SSDVLDTCLNVQ 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.423
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,471,653
Number of extensions: 2242589
Number of successful extensions: 1835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1815
Number of HSP's successfully gapped: 23
Length of query: 421
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 322
Effective length of database: 6,546,556
Effective search space: 2107991032
Effective search space used: 2107991032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)