RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8383
         (421 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  316 bits (810), Expect = e-106
 Identities = 158/346 (45%), Positives = 226/346 (65%), Gaps = 25/346 (7%)

Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
           + IM ++P ++R+RL V FR EEGLDYGG+AREW +LLSHE+LNP Y LF+Y+ ++NY L
Sbjct: 39  QQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCL 98

Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
           QINP S +NP+HLSYF F GR I +A+FHG +ID GF+ PFYK           +L+K +
Sbjct: 99  QINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYK----------RMLSKKL 148

Query: 170 TLEDIEGVDPELHRSLTWILENTLSNDVLDTTFAVEVNSFGVLKVHELKGGGKDIQVTED 229
           T++D+E +D E + SL WI +N +    L+  F+V++   G +  H+LK GG +I VTE+
Sbjct: 149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEE 208

Query: 230 NKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRPFDERELELVIGGLTSIDIHD 289
           NK EY+ L   WRF RG+++Q  A   GF E+VP+  L+ FDE+ELE+++ G+  +D+ D
Sbjct: 209 NKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLAD 268

Query: 290 WKQHTRLKHCTSDTPVVKWFWQIVESYSEEMRARLLQCSTGAA--------------GPR 335
           W+++T  +H T ++  + WFWQ V+    E+R RLLQ  TG                GP+
Sbjct: 269 WQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQ 328

Query: 336 LFTIHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVEET 381
            F I         LP++HTCFNR+DLP Y SY++L +KL  A+EET
Sbjct: 329 KFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score =  268 bits (685), Expect = 1e-87
 Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 25/341 (7%)

Query: 50  RLIMKMRPKEMRKRLMVKFRAEEGLDYGGVAREWLYLLSHEMLNPQYGLFQYSREDNYTL 109
            +I    P +++K+L V+F  E+G+D GGV++E+  L+  E+ NP  G+F Y        
Sbjct: 22  EMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST---- 77

Query: 110 QINPDSGVNPEHLSYFHFAGRIIGIAVFHGHYIDGGFTTPFYKISRVTTPFYKMLLNKPI 169
           ++   +  + E    F   G ++G+A+++   +D  F              Y+ L+ K  
Sbjct: 78  KLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHF----------PMVVYRKLMGKKG 127

Query: 170 TLEDIEGVDPELHRSLTWILENTLSN-DVLDTTFAV-EVNSFGVLKVHELKGGGKDIQVT 227
           T  D+    P L++SL  +LE   +  D +  TF + + + FG   +++LK  G  I +T
Sbjct: 128 TFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPIT 187

Query: 228 EDNKKEYVRLYVNWRFMRGIEQQFLALQKGFTEIVPIHLLRP-FDERELELVIGGLTSID 286
            +N+KE+V LY ++   + +E+QF A ++GF  +     L+  F   E+EL+I G  ++D
Sbjct: 188 NENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLD 247

Query: 287 IHDWKQHTRLKHC-TSDTPVVKWFWQIVESYSEEMRARLLQCSTGA-------AGPRLFT 338
               ++ T      T D+ +++ FW+IV S+++E +   LQ +TG         G     
Sbjct: 248 FQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMI 307

Query: 339 IHATDSPSDNLPKAHTCFNRIDLPNYDSYQKLYDKLSQAVE 379
           I      ++ LP +HTCFN + LP Y S +KL ++L +A+ 
Sbjct: 308 IAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT 348


>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 141

 Score = 32.8 bits (75), Expect = 0.031
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 328 STGAAGPRLFTIHATDSPSDNLPKA--HTCFNRIDLPNYDSYQKLYDKLSQAVEETLTCL 385
           S+G++GPRL+   +  S    +  A  H C       N     ++ +++ ++       L
Sbjct: 2   SSGSSGPRLYKEPSAKSNKFIIHNALSHCCLAGK--VNEPQKNRILEEIEKSKANHFLIL 59

Query: 386 YRIDTPCRLTCLYRIDLPNYDSYQKLY 412
           +R D+ C+   LY +     +   +L 
Sbjct: 60  FR-DSSCQFRALYTLS-GETEELSRLA 84


>d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 134

 Score = 27.5 bits (61), Expect = 1.5
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 163 MLLNKPITLEDIEGVDPELHRSLTWILENTLSN-----DVLDTTFAVE 205
           M+  K ITL D + +     +S     + + SN      + DT FAV 
Sbjct: 1   MIPFKDITLADRDTITAFTMKSDRRNCDLSFSNLCSWRFLYDTQFAVI 48


>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,
           N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 182

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 376 QAVEETLTCLYRIDTPCRLTCLYRIDLPNY 405
            A+ E + CL   D PC+ +C   +D+ ++
Sbjct: 70  GALREAMRCLKCADAPCQKSCPTHLDIKSF 99


>d2ex0a1 c.87.1.9 (A:26-412)
           Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
           multocida [TaxId: 747]}
          Length = 387

 Score = 27.9 bits (62), Expect = 2.5
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 160 FYKMLLNKPITLEDIEGVDPELHRSLTWILENTL-SNDVLDTTFAVEVNSFGVLKVHELK 218
           F ++  N+P        +D         I  N   S  ++    A        + + +L 
Sbjct: 54  FVELKDNRPTE-ALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQL- 111

Query: 219 GGGKDIQVTEDNKKEYVRLYVNWR 242
                  + +D   EYV L     
Sbjct: 112 ------NLYDDGSMEYVDLE-KEE 128


>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
           {Human papillomavirus type 16 [TaxId: 333760]}
          Length = 200

 Score = 27.3 bits (61), Expect = 2.8
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 217 LKGGGKDIQVTEDNKKEYVRLYVNWRF 243
           +K  G  ++V  D        Y NW  
Sbjct: 110 IKKHGYTVEVQFDGDICNTMHYTNWTH 136


>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human
           papillomavirus type 11 [TaxId: 10580]}
          Length = 196

 Score = 26.9 bits (60), Expect = 3.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 217 LKGGGKDIQVTEDNKKEYVRLYVNWRF 243
            K  G  ++V  D  ++ V  YV W  
Sbjct: 110 FKKQGNTVEVKFDGCEDNVMEYVVWTH 136


>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 83

 Score = 25.8 bits (57), Expect = 3.5
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 146 FTTPFYKISRVTTPFYKMLLNKPITLEDIEGV 177
                Y       P+  ++  + +TL   + +
Sbjct: 3   SIVVAYYFCGEPIPYRTLVRGRAVTLGQFKEL 34


>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
           papillomavirus type 18 [TaxId: 333761]}
          Length = 194

 Score = 26.9 bits (60), Expect = 3.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 217 LKGGGKDIQVTEDNKKEYVRLYVNWRF 243
            K GG+ +QV  D  K+    YV W  
Sbjct: 115 FKKGGQTVQVYFDGNKDNCMTYVAWDS 141


>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
           ramigera [TaxId: 350]}
          Length = 124

 Score = 26.0 bits (57), Expect = 5.4
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 321 RARLLQCSTGAAGPRLFTIHATDSPSDNLPKAHTCFNRIDL 361
             R++  +T    P++       +    L +A      +DL
Sbjct: 4   LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDL 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,692,187
Number of extensions: 84506
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 19
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)