Query psy8386
Match_columns 73
No_of_seqs 108 out of 433
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:18:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039|consensus 99.7 1.8E-18 4E-23 137.9 1.6 66 1-72 283-353 (646)
2 PLN02844 oxidoreductase/ferric 99.2 4.3E-12 9.4E-17 103.2 1.3 66 2-73 245-311 (722)
3 PLN02631 ferric-chelate reduct 99.2 5.7E-12 1.2E-16 102.3 0.0 65 2-72 241-306 (699)
4 PLN02292 ferric-chelate reduct 99.0 2.9E-11 6.4E-16 98.1 0.0 66 2-73 258-324 (702)
5 PF01794 Ferric_reduct: Ferric 97.7 9.1E-06 2E-10 50.6 0.8 36 2-43 88-124 (125)
6 KOG1440|consensus 49.9 8.4 0.00018 30.8 1.1 59 2-66 172-234 (432)
7 COG2717 Predicted membrane pro 22.9 68 0.0015 23.3 2.0 62 2-70 125-194 (209)
8 PRK05419 putative sulfite oxid 16.0 94 0.002 21.9 1.4 61 2-70 125-194 (205)
9 PHA02993 hypothetical protein; 15.4 48 0.001 23.0 -0.2 47 10-68 51-97 (147)
10 PF09586 YfhO: Bacterial membr 13.4 2.2E+02 0.0047 23.4 3.0 62 4-71 100-167 (843)
No 1
>KOG0039|consensus
Probab=99.71 E-value=1.8e-18 Score=137.89 Aligned_cols=66 Identities=33% Similarity=0.803 Sum_probs=63.0
Q ss_pred ChhHHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhcc-----ceeeheehhhhhhhhhhhhhhhhc
Q psy8386 1 MFVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCP-----NFWKWVILPGIIYCCERIFRFTIM 72 (73)
Q Consensus 1 ~l~l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~-----~~w~~~~~P~~ly~~eR~~R~~~s 72 (73)
++++.+|+++|++.+||++|| +||||||||+++|+++++||. ++|+|+++|+++|++||+.|+.||
T Consensus 283 ~i~~~im~v~s~~~fRR~~~e------~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p~~ly~~dR~~r~~r~ 353 (646)
T KOG0039|consen 283 LILMLIMFVLSLPFFRRRFYE------AFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVPVLLYILDRILRFLRS 353 (646)
T ss_pred HHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999 999999999999999999998 899999999999999999999987
No 2
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.19 E-value=4.3e-12 Score=103.19 Aligned_cols=66 Identities=21% Similarity=0.476 Sum_probs=57.8
Q ss_pred hhHHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhccceee-heehhhhhhhhhhhhhhhhcC
Q psy8386 2 FVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCPNFWK-WVILPGIIYCCERIFRFTIMR 73 (73)
Q Consensus 2 l~l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~~~w~-~~~~P~~ly~~eR~~R~~~sr 73 (73)
+++++|+++|++++||+.|| +|+++|++++++++++.+|+++.+. |+.+++.+|++||++|..|++
T Consensus 245 v~l~iL~itSl~~iRR~~YE------lF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~ 311 (722)
T PLN02844 245 VTGLVIWITSLPQIRRKRFE------IFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSR 311 (722)
T ss_pred HHHHHHHHHhhHHHHhhhhH------HHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEe
Confidence 57889999999999999999 9999999999999999999987644 555556799999999988763
No 3
>PLN02631 ferric-chelate reductase
Probab=99.15 E-value=5.7e-12 Score=102.26 Aligned_cols=65 Identities=25% Similarity=0.602 Sum_probs=58.4
Q ss_pred hhHHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhccceeeheehhh-hhhhhhhhhhhhhc
Q psy8386 2 FVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCPNFWKWVILPG-IIYCCERIFRFTIM 72 (73)
Q Consensus 2 l~l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~~~w~~~~~P~-~ly~~eR~~R~~~s 72 (73)
+++.+|+.+|++++||+.|| +|+++|++++++.+++.+|.++.|.+.+.|+ .++++||++|..|+
T Consensus 241 v~~~lm~~~Sl~~~RRr~YE------~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~ 306 (699)
T PLN02631 241 VIGIAMWVTSLPSFRRKKFE------LFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQS 306 (699)
T ss_pred HHHHHHHHhccHHHHhhhhh------HHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999 9999999999888999999888888776665 59999999999885
No 4
>PLN02292 ferric-chelate reductase
Probab=99.05 E-value=2.9e-11 Score=98.15 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=58.3
Q ss_pred hhHHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhccceeeheehhh-hhhhhhhhhhhhhcC
Q psy8386 2 FVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCPNFWKWVILPG-IIYCCERIFRFTIMR 73 (73)
Q Consensus 2 l~l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~~~w~~~~~P~-~ly~~eR~~R~~~sr 73 (73)
+++++|+.+|.+.+||+.|| .|+++|++++++++.+.+|.+..|.+.+.|+ .++++||++|..|+|
T Consensus 258 v~~~il~v~Sl~~iRR~~YE------~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~ 324 (702)
T PLN02292 258 VAGLVMWATTYPKIRRRFFE------VFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSR 324 (702)
T ss_pred HHHHHHHHHhhHHHHhcccH------hHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999 9999999999999999999977676666676 589999999998764
No 5
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=97.75 E-value=9.1e-06 Score=50.64 Aligned_cols=36 Identities=22% Similarity=0.710 Sum_probs=31.2
Q ss_pred hhHHHHHHhhhhhhh-hhcCCcCccceeEeeehhhHHHHHHHH
Q psy8386 2 FVLVLMLRHCITFLR-TRGFNHKAKKTVFYWTHLLYVPFWILL 43 (73)
Q Consensus 2 l~l~lm~~~s~~~iR-r~~f~~~~~f~~Fw~tHhL~i~f~~ll 43 (73)
+++++|.++|.+++| |++|| .|+++|++..+.+++.
T Consensus 88 ~~l~~l~~tS~~~~R~r~~ye------~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 88 LLLLILAVTSFPWIRRRRNYE------IFYYLHILFYIAFLLA 124 (125)
T ss_pred HHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHH
Confidence 578889999999999 88888 9999999988877654
No 6
>KOG1440|consensus
Probab=49.95 E-value=8.4 Score=30.83 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=41.2
Q ss_pred hhHHHHHHhhhhh-hhhhcCCcCccceeEeeehh--hHHHHHHHHHHhc-cceeeheehhhhhhhhhhh
Q psy8386 2 FVLVLMLRHCITF-LRTRGFNHKAKKTVFYWTHL--LYVPFWILLILHC-PNFWKWVILPGIIYCCERI 66 (73)
Q Consensus 2 l~l~lm~~~s~~~-iRr~~f~~~~~f~~Fw~tHh--L~i~f~~ll~~Hg-~~~w~~~~~P~~ly~~eR~ 66 (73)
++...++++|+.+ .=+..|. .|=|||. +.++.-..+++++ ++.-.|+++|..+.+|.=+
T Consensus 172 i~gf~~FV~sL~k~~yk~QFg------~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi 234 (432)
T KOG1440|consen 172 LIGFVSFVLSLRKGIYKLQFG------LFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDI 234 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHH------hHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCch
Confidence 3456777888765 4444455 8999998 4566777788888 4567789999987666433
No 7
>COG2717 Predicted membrane protein [Function unknown]
Probab=22.91 E-value=68 Score=23.27 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=39.0
Q ss_pred hhHHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhcc--------ceeeheehhhhhhhhhhhhhhh
Q psy8386 2 FVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCP--------NFWKWVILPGIIYCCERIFRFT 70 (73)
Q Consensus 2 l~l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~--------~~w~~~~~P~~ly~~eR~~R~~ 70 (73)
++|+.+..||.+..||+-=. ---.-|.+--+++++-.+|=. ..+.|.++ ...|.+.|+.+..
T Consensus 125 lll~pLalTS~k~~~rrlG~------rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 125 LLLIPLALTSFKWVRRRLGK------RWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH-HHHHHHHHHHHHH
Confidence 46778889999888887401 122347787788999999972 22223322 2466777776653
No 8
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=15.98 E-value=94 Score=21.94 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=36.3
Q ss_pred hhHHHHHHhhhhhhhhhc-CCcCccceeEee-ehhhHHHHHHHHHHhc-----cc--eeeheehhhhhhhhhhhhhhh
Q psy8386 2 FVLVLMLRHCITFLRTRG-FNHKAKKTVFYW-THLLYVPFWILLILHC-----PN--FWKWVILPGIIYCCERIFRFT 70 (73)
Q Consensus 2 l~l~lm~~~s~~~iRr~~-f~~~~~f~~Fw~-tHhL~i~f~~ll~~Hg-----~~--~w~~~~~P~~ly~~eR~~R~~ 70 (73)
+.++.+..||.+..||+- ++ |. -|.+--+.+++-.+|- .+ ......+-+..+.+-|+.+..
T Consensus 125 ~lLl~LaiTS~~~~~rrLg~~--------Wk~LH~l~Y~a~~L~~~H~~~~~k~~~~~~~~y~~~~~~ll~~R~~~~~ 194 (205)
T PRK05419 125 LILLPLALTSTRASQRRLGKR--------WQKLHRLVYLIAILAPLHYLWSVKSDSPEPLIYAAIVAVLLALRLKKLR 194 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999888753 23 44 4666566677888993 21 111222333455556776654
No 9
>PHA02993 hypothetical protein; Provisional
Probab=15.40 E-value=48 Score=23.02 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=33.0
Q ss_pred hhhhhhhhhcCCcCccceeEeeehhhHHHHHHHHHHhccceeeheehhhhhhhhhhhhh
Q psy8386 10 HCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILLILHCPNFWKWVILPGIIYCCERIFR 68 (73)
Q Consensus 10 ~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll~~Hg~~~w~~~~~P~~ly~~eR~~R 68 (73)
..++.++.+|++ |-.+-.||.+|+ ..-|+ +-|++...++.++|..-+
T Consensus 51 ~ts~~v~~~g~~-------FtL~ELLYSpFh----fqq~q-~QYllP~FVl~CI~eA~k 97 (147)
T PHA02993 51 ETSKSIRIRGHK-------FTLSELLYSPFH----FQQPQ-YQYLLPGFVLTCIDEAKK 97 (147)
T ss_pred cccceEEEcCce-------eEhHHhhcCchh----hcCcc-eEEEccHHHHHHHHHHHh
Confidence 345677777875 777788998877 44444 467777778888886544
No 10
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=13.36 E-value=2.2e+02 Score=23.36 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhhhhhcCCcCccceeEeeehhhHHHHHHHH--HHh-ccc-eee--heehhhhhhhhhhhhhhhh
Q psy8386 4 LVLMLRHCITFLRTRGFNHKAKKTVFYWTHLLYVPFWILL--ILH-CPN-FWK--WVILPGIIYCCERIFRFTI 71 (73)
Q Consensus 4 l~lm~~~s~~~iRr~~f~~~~~f~~Fw~tHhL~i~f~~ll--~~H-g~~-~w~--~~~~P~~ly~~eR~~R~~~ 71 (73)
+.++..++.-..|+.+-+ .=....-+..+.|++. .+. +.+ .|. .+..|++++.+||+++--+
T Consensus 100 ~~lag~~~~~~l~~~~~~------~~~~~~~i~s~~Yafsg~~~~~~~~~~fld~~i~lPL~llgie~~~~~~k 167 (843)
T PF09586_consen 100 IGLAGLFFYLYLRKFKKS------RSDWAALIGSLLYAFSGYVIYYSFNIMFLDAMILLPLLLLGIERLLKEKK 167 (843)
T ss_pred HHHHHHHHHHHHHHhcCC------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566666778887654 1113333444444433 121 111 122 3467999999999987443
Done!