Query psy8386
Match_columns 73
No_of_seqs 108 out of 433
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:19:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l69_A Rossmann 2X3 fold prote 8.6 1.3E+02 0.0045 19.1 1.2 10 12-21 94-103 (134)
2 3clj_A Protein NRD1; CTD-inter 7.8 1.3E+02 0.0044 19.7 0.9 14 58-71 60-73 (157)
3 3bkd_A Transmembrane domain of 7.7 1.3E+02 0.0043 14.4 0.6 9 58-66 17-25 (26)
4 3lbw_A M2 protein; proton chan 7.4 1.3E+02 0.0046 14.0 0.6 9 58-66 14-22 (23)
5 2jek_A RV1873; structural geno 6.3 76 0.0026 21.0 -0.8 9 50-58 36-44 (145)
6 2kih_A Matrix protein 2; S31N, 4.9 2.4E+02 0.0081 14.9 0.8 11 57-67 20-30 (43)
7 2kgn_A Protein STE5; MAPKKK, S 4.8 2.3E+02 0.0079 13.3 0.6 9 64-72 10-18 (26)
8 3pmk_N Phosphoprotein; chapero 4.4 2.1E+02 0.0071 16.6 0.3 9 21-29 32-40 (68)
9 3mqz_A Uncharacterized conserv 3.4 2.4E+02 0.0081 19.6 -0.0 21 17-37 90-110 (215)
10 2ljb_A M2 protein, BM2 protein 3.2 4E+02 0.014 13.5 0.8 10 58-67 21-30 (35)
No 1
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=8.58 E-value=1.3e+02 Score=19.09 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.1
Q ss_pred hhhhhhhcCC
Q psy8386 12 ITFLRTRGFN 21 (73)
Q Consensus 12 ~~~iRr~~f~ 21 (73)
++.+||+|||
T Consensus 94 srevrrrgfe 103 (134)
T 2l69_A 94 SREVRRRGFE 103 (134)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhcCce
Confidence 4678999988
No 2
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=7.80 E-value=1.3e+02 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhhhh
Q psy8386 58 GIIYCCERIFRFTI 71 (73)
Q Consensus 58 ~~ly~~eR~~R~~~ 71 (73)
+.||++|-++|-.+
T Consensus 60 ~~LYVvDSIvR~~~ 73 (157)
T 3clj_A 60 GSLYIIDSIGRAYL 73 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHH
Confidence 36999999998654
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=7.68 E-value=1.3e+02 Score=14.43 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=5.9
Q ss_pred hhhhhhhhh
Q psy8386 58 GIIYCCERI 66 (73)
Q Consensus 58 ~~ly~~eR~ 66 (73)
+++++.||+
T Consensus 17 LiLwIldrl 25 (26)
T 3bkd_A 17 LILWILDRL 25 (26)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 456777775
No 4
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=7.43 E-value=1.3e+02 Score=13.98 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=5.9
Q ss_pred hhhhhhhhh
Q psy8386 58 GIIYCCERI 66 (73)
Q Consensus 58 ~~ly~~eR~ 66 (73)
+++++.||+
T Consensus 14 LiLwIlDrL 22 (23)
T 3lbw_A 14 LILWILDRL 22 (26)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 456777775
No 5
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=6.31 E-value=76 Score=20.99 Aligned_cols=9 Identities=33% Similarity=1.431 Sum_probs=7.3
Q ss_pred eeeheehhh
Q psy8386 50 FWKWVILPG 58 (73)
Q Consensus 50 ~w~~~~~P~ 58 (73)
-|||++.|=
T Consensus 36 HWMWfIFPQ 44 (145)
T 2jek_A 36 HWMWFVFPQ 44 (145)
T ss_dssp SCHHHHSCC
T ss_pred ceeeehHhh
Confidence 499999884
No 6
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=4.94 E-value=2.4e+02 Score=14.90 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=7.9
Q ss_pred hhhhhhhhhhh
Q psy8386 57 PGIIYCCERIF 67 (73)
Q Consensus 57 P~~ly~~eR~~ 67 (73)
-++++++||+.
T Consensus 20 HLiLwildRlf 30 (43)
T 2kih_A 20 HLILWILDRLF 30 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35678888875
No 7
>2kgn_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2l4u_A
Probab=4.76 E-value=2.3e+02 Score=13.33 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=5.9
Q ss_pred hhhhhhhhc
Q psy8386 64 ERIFRFTIM 72 (73)
Q Consensus 64 eR~~R~~~s 72 (73)
|++.|+.||
T Consensus 10 eklarfqrs 18 (26)
T 2kgn_A 10 EKLARFQRS 18 (26)
T ss_dssp TTHHHHGGG
T ss_pred HHHHHHHHh
Confidence 566676665
No 8
>3pmk_N Phosphoprotein; chaperone, viral protein; 3.03A {Recombinant vesicular stomatitis indiarvsv-g}
Probab=4.40 E-value=2.1e+02 Score=16.59 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=2.6
Q ss_pred CcCccceeE
Q psy8386 21 NHKAKKTVF 29 (73)
Q Consensus 21 ~~~~~f~~F 29 (73)
|+||+|++|
T Consensus 32 EeKtn~eLF 40 (68)
T 3pmk_N 32 AEKSNYELF 40 (68)
T ss_dssp CCCC-----
T ss_pred HHHHHHHHH
Confidence 457888887
No 9
>3mqz_A Uncharacterized conserved protein DUF1054; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE; 1.30A {Leptospirillum rubarum}
Probab=3.40 E-value=2.4e+02 Score=19.65 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=16.0
Q ss_pred hhcCCcCccceeEeeehhhHH
Q psy8386 17 TRGFNHKAKKTVFYWTHLLYV 37 (73)
Q Consensus 17 r~~f~~~~~f~~Fw~tHhL~i 37 (73)
++||+-..|||+.-|.-|+|+
T Consensus 90 KRGYK~lPHFqiGl~~dhlFi 110 (215)
T 3mqz_A 90 KRGYKSYAHSGVFIGGRGLSV 110 (215)
T ss_dssp SSCCTTSCEEEEEEETTEEEE
T ss_pred CCccccCCceeeeecCCeEEE
Confidence 357888899999877777665
No 10
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=3.21 E-value=4e+02 Score=13.45 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhhhhhhhhh
Q psy8386 58 GIIYCCERIF 67 (73)
Q Consensus 58 ~~ly~~eR~~ 67 (73)
++++.+||+.
T Consensus 21 lilWildrLf 30 (35)
T 2ljb_A 21 FIAWTIGHLN 30 (35)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHhhhhH
Done!