RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8386
         (73 letters)



>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase.
          Length = 702

 Score = 31.0 bits (70), Expect = 0.026
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 28  VFYWTHLLYVPFWILLILHCPNFWKWVILPGI-IYCCERIFRF 69
           VF++TH LY+ F +  + H    +  +  PG  I+  +R  RF
Sbjct: 278 VFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRF 320


>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
          Length = 699

 Score = 30.4 bits (68), Expect = 0.052
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 23  KAKKTVFYWTHLLYVPFWILLILHCPNFWKWVILPGI-IYCCERIFRF 69
           + K  +F++TH LY  + +  ++H  + W  +ILP I ++  +R  RF
Sbjct: 256 RKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRF 303


>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase.
          Length = 722

 Score = 29.4 bits (66), Expect = 0.11
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 28  VFYWTHLLYVPFWILLILHCPNFWKWVILPGI 59
           +FY+TH LY+ F I  + H  +   +++ PGI
Sbjct: 265 IFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGI 296


>gnl|CDD|115357 pfam06694, Plant_NMP1, Plant nuclear matrix protein 1 (NMP1).  This
           family consists of several plant specific nuclear matrix
           protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is
           a ubiquitously expressed 36 kDa protein, which has no
           homologues in animals and fungi, but is highly conserved
           among flowering and non-flowering plants. NMP1 is
           located both in the cytoplasm and nucleus and that the
           nuclear fraction is associated with the nuclear matrix.
           NMP1 is a candidate for a plant-specific structural
           protein with a function both in the nucleus and
           cytoplasm.
          Length = 325

 Score = 28.5 bits (63), Expect = 0.26
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 6   LMLR-HCITFLRT-RGFNHKAKKTVFYWTHLLYVP 38
             LR H  +FL T + FN    K +  WTH++ VP
Sbjct: 211 AKLREHLESFLDTAKSFNTIYTKEIHPWTHMMEVP 245


>gnl|CDD|219610 pfam07857, DUF1632, CEO family (DUF1632).  These sequences are
          found in hypothetical eukaryotic proteins of unknown
          function. The region concerned is approximately 280
          residues long. This family has been termed the CEO
          family for C. elegans ORF.
          Length = 254

 Score = 27.0 bits (60), Expect = 0.84
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 35 LYVPFWILLILHCPNFWKWVILPGIIYCCERIFRFTIM 72
          L V   +   L  P F    +L G+++     F   IM
Sbjct: 39 LLVGLAVYATLGFPKFEPLAMLGGMLWATGNAFAVPIM 76


>gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed.
          Length = 422

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 1   MFVLVLMLRHCITFLRTRGFNHKAKKTVFYWTHL 34
            F  +  +R+C        F  + + TV   THL
Sbjct: 103 AFCDLTGVRNCRDL---TDFGREIRATVLQRTHL 133


>gnl|CDD|222712 pfam14367, DUF4411, Domain of unknown function (DUF4411).  This
          family of proteins is functionally uncharacterized.
          This family of proteins is found in bacteria and
          archaea. Proteins in this family are typically between
          153 and 170 amino acids in length. There is a single
          completely conserved residue D that may be functionally
          important.
          Length = 160

 Score = 24.1 bits (53), Expect = 7.9
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 47 CPNFWKWV---ILPGIIYCCERIFR 68
           P+FW W+   I  G +   + ++ 
Sbjct: 21 FPSFWDWLEQLIESGKLISIDEVYD 45


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.344    0.153    0.592 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,814,268
Number of extensions: 292707
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 25
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 53 (24.1 bits)