RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8386
         (73 letters)



>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
           {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
          Length = 344

 Score = 24.8 bits (55), Expect = 2.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 46  HCPNFWKWVILPGIIYCCERIFRFTI 71
           + P F   ++ PG  Y     F+F++
Sbjct: 318 NQPRFPPVLLRPGEEYDHTTWFKFSV 343


>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
           aldose_1_epimerase, sugar metabolism, predicted,
           structural genomics; 2.00A {Saccharomyces cerevisiae}
          Length = 342

 Score = 24.1 bits (53), Expect = 4.2
 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 46  HCPNFWKWVIL-PGIIYCCERIFRFTI 71
           +   +   V+L  G +Y  +  ++F I
Sbjct: 316 NRDEWRGCVLLKRGEVYTSKTQYKFDI 342


>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
           genomics, structure-based function assignment,
           decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
           b.30.5.4
          Length = 339

 Score = 24.0 bits (53), Expect = 4.8
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 46  HCPNFWKWVILPGIIYCCERIFRFTIM 72
           +  +F    + PG  YC E ++ F+ +
Sbjct: 312 NFDHFPDVSLRPGDHYCQEIVYTFSHV 338


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.344    0.153    0.592 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,207,947
Number of extensions: 53454
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 6
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 51 (23.5 bits)