BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8387
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7 Py
Motif Containing Peptide
Length = 90
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 69/86 (80%)
Query: 73 LLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEV 132
L PPDLP GYE RTTQQGQVYF H TGVSTWHDPR+P++L ELG LPPGWE+
Sbjct: 3 LGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEI 62
Query: 133 RQTASGRYYYVDHNNRTTQFTDPRLT 158
R TA+GR Y+VDHNNRTTQFTDPRL+
Sbjct: 63 RNTATGRVYFVDHNNRTTQFTDPRLS 88
>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In Complex
With A Human Smad1 Derived Peptide
Length = 35
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 31/35 (88%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LG LPPGWEVR T SGR Y+VDHNNRTTQFTDPRL
Sbjct: 1 LGPLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPRL 35
>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide
Complex
Length = 42
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
G LPPGWE+R TA+GR Y+VDHNNRTTQFTDPRL+
Sbjct: 6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40
>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived Peptide
Length = 37
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
G LPPGWE+R TA+GR Y+VDHNNRTTQFTDPRL+
Sbjct: 1 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 35
>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 35
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 30/34 (88%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
G LPPGWEVR T SGR Y+VDHNNRTTQFTDPRL
Sbjct: 1 GPLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPRL 34
>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of
Deltex
Length = 88
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATEL-----GNLPPGWEVRQ 134
LP G+E + +VYF + + W DPR Q E+ G LPPGWE+R
Sbjct: 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT-------QGQEVSLINEGPLPPGWEIRY 65
Query: 135 TASGRYYYVDHNNRTTQFTDPR 156
TA+G ++VDHN R T F DPR
Sbjct: 66 TAAGERFFVDHNTRRTTFEDPR 87
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LG LP GWE + + R Y+V+H NRTTQ+ DPR
Sbjct: 10 LGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43
>pdb|2LB0|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Di- Phosphorylated Human Smad1 Derived
Peptide
Length = 36
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 27/33 (81%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
+LP GYE RTT QGQVYF H TGVSTWHDPRI
Sbjct: 4 ELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 36
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 125 NLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP G+E R T G+ Y++ + + DPR+
Sbjct: 4 ELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 36
>pdb|2LAZ|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Mono-Phosphorylated Human Smad1 Derived
Peptide
Length = 33
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 27/33 (81%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
+LP GYE RTT QGQVYF H TGVSTWHDPRI
Sbjct: 1 ELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 33
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 125 NLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP G+E R T G+ Y++ + + DPR+
Sbjct: 1 ELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPRI 33
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNL 165
A++LG LP GWE+R T + R Y+VDHN +TT + DPRL ++ QN+
Sbjct: 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNV 48
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKEL 115
LP G+E+R T +VYF T +TW DPR+P L
Sbjct: 9 LPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSL 44
>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide
Complex
Length = 53
Score = 49.7 bits (117), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
G LPPGWE+R TA+G ++VDHN R T F DPR
Sbjct: 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 72 SLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
SL+ + P LP G+EIR T G+ +F T +T+ DPR
Sbjct: 12 SLINEGP-LPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
+G LPPGWE R ++GR Y+V+HN R TQ+ DPR
Sbjct: 3 MGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPR 36
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E RT G+VYF + T ++ W DPR
Sbjct: 6 LPPGWEKRTDSNGRVYFVNHNTRITQWEDPR 36
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAII 162
P + +LG LPPGWE R GR ++++HN + TQ+ DPR+ I
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E RT G+V+F + + W DPR+
Sbjct: 12 LPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
+G LPPGWE R ++GR Y+V+HN R Q+ DPR
Sbjct: 3 MGPLPPGWEKRTDSNGRVYFVNHNTRIXQWEDPR 36
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E RT G+VYF + T + W DPR
Sbjct: 6 LPPGWEKRTDSNGRVYFVNHNTRIXQWEDPR 36
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
Phosphorylated Human Smad3 Derived Peptide
Length = 44
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
A E LPPGWE+R +GR ++ DHN +TT + DPRL
Sbjct: 2 AMEQSFLPPGWEMRIAPNGRPFFYDHNTKTTTWEDPRL 39
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E+R G+ +FY T +TW DPR+
Sbjct: 8 LPPGWEMRIAPNGRPFFYDHNTKTTTWEDPRL 39
>pdb|2OP7|A Chain A, Ww4
Length = 39
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+R T G Y+VDHN RTT F DPR
Sbjct: 5 LPEGWEIRYTREGVRYFVDHNTRTTTFKDPR 35
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPK 113
LP G+EIR T++G YF T +T+ DPR K
Sbjct: 5 LPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGK 38
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LP GWE R+ A GR YYV+HNNRTT +T P
Sbjct: 2 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
Sdpqipppyvep
pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
Matrix Protein Vp40 Derived Peptide Ilptappeymea
Length = 49
Score = 46.6 bits (109), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 122 ELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
E G LP GWEVR +GR +++DHN +TT + DPRL
Sbjct: 9 EQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
Score = 31.6 bits (70), Expect = 0.24, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E+R G+ +F T +TW DPR+
Sbjct: 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LP GWE R+ A GR YYV+HNNRTT +T P
Sbjct: 5 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
P LP G+E R +G+ Y+ + +TW P
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LP GWE R+ A GR YYV+HNNRTT +T P
Sbjct: 3 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
P LP G+E R +G+ Y+ + +TW P
Sbjct: 1 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTP 159
G LP GWE T G YY++H N+TT + DPRL P
Sbjct: 1 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRLDP 36
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E TQ G++Y+ + ++W DPR+
Sbjct: 3 LPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 34
>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3
Ubiq Protein Ligase Hecw1
Length = 109
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP GWE++ G+ ++VDHN+R T F DPR+
Sbjct: 73 LPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
+LP G+EI+T QQG+ +F + +T+ DPRIP
Sbjct: 72 ELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105
>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2
Length = 41
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LPPGWE+R +GR +++DHN +TT + DPRL
Sbjct: 9 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 30.4 bits (67), Expect = 0.48, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E+R G+ +F T +TW DPR+
Sbjct: 9 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The Human
E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch
Length = 40
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+R T G Y+VDHN RTT + DPR
Sbjct: 8 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+R T G YF +T+ DPR
Sbjct: 8 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LPPGW+ +T +G+ YY +HN +T+ +TDPR++
Sbjct: 4 LPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G++ T G+ Y+Y+ T STW DPR+
Sbjct: 4 LPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
G LP GWE T G YY++H N+TT + DPRL
Sbjct: 5 GPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E TQ G++Y+ + ++W DPR+
Sbjct: 7 LPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
>pdb|2L4J|A Chain A, Yap Ww2
Length = 46
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
P + G LP GWE T G YY++H N+TT + DPRL
Sbjct: 3 PNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E T +G++Y+ + ++W DPR+
Sbjct: 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43
>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 57
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LG LP WE+ T +G Y++DHN +TT + DPR
Sbjct: 12 LGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP +E+ T+ G+VYF T ++W DPR
Sbjct: 15 LPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LPPGWE + GR YYV+HNNR+TQ+ P L
Sbjct: 5 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 123 LGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
+G LPPGWE R GR YYVDH RTT + P L
Sbjct: 4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Salvador Homolog 1 Protein (Sav1)
Length = 49
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGW V T GR YY+DHN TT ++ P
Sbjct: 12 LPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41
>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox
Length = 54
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNLVK 167
G+LP GWE +G+ ++VDH N+ T + DPRL + N K
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTK 53
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
DLP+G+E T + GQV+F +T+ DPR+
Sbjct: 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 92 GQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQ 151
G++Y+Y+ T STW P KEL ++ EL GW+ +TA G+ YY + R T
Sbjct: 12 GRIYYYNTLTKKSTWEKP---KELISQE--ELLLRENGWKAAKTADGKVYYYNPTTRETS 66
Query: 152 FTDPRL 157
+T P
Sbjct: 67 WTIPAF 72
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex With
A Human Smad1 Doubly-Phosphorilated Derived Peptide
Length = 40
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+ +T+SG+ Y+++H ++TT + DPR
Sbjct: 8 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 38
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+ T GQ YF + +TW DPR
Sbjct: 8 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 38
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
With A Phosphorylated Human Smad1 Derived Peptide
pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+ +T+SG+ Y+++H ++TT + DPR
Sbjct: 4 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 34
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+ T GQ YF + +TW DPR
Sbjct: 4 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 34
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
Length = 40
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+ +T+SG+ Y+++H ++TT + DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 39
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+ T GQ YF + +TW DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 39
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
Peptide
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+ +T+SG+ Y+ +H ++TT + DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+ T GQ YF + +TW DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGWE R +A GR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSADGRVYYFNHITNASQWERP 36
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
LP G+E R + G+VY+++ T S W P
Sbjct: 7 LPPGWEKRMSADGRVYYFNHITNASQWERP 36
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant
Length = 41
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LP GWE+ +T+ G+ Y+++H ++TT + DPR
Sbjct: 9 LPAGWEMAKTSXGQRYFLNHIDQTTTWQDPR 39
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+ T GQ YF + +TW DPR
Sbjct: 9 LPAGWEMAKTSXGQRYFLNHIDQTTTWQDPR 39
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 125 NLPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGWE R GR YYVDH + T + P
Sbjct: 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz Domain-
Containing Protein 1. Magi-1
Length = 60
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP GWE + YYVDH NR TQ+ +P L
Sbjct: 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYANHITNASQWERP 37
>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy
Peptide Complex
Length = 46
Score = 34.7 bits (78), Expect = 0.025, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
P + E LPP W ++ +GR +++DH +R T + DPR
Sbjct: 2 PLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPR 41
>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
Length = 49
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 125 NLPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGWE +++ YYVDH N+ Q+ P
Sbjct: 13 GLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 11 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H Q+ P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNAAQWERP 37
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Cdc25
Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With Human
Tau Phosphothreonine Peptide
Length = 39
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 34
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A Human
Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q P
Sbjct: 7 LPPGWEKRMSRSSGRVYYFNHITNASQAERP 37
>pdb|2ZAJ|A Chain A, Solution Structure Of The Short-Isoform Of The Second Ww
Domain From The Human Membrane-Associated Guanylate
Kinase, Ww And Pdz Domain-Containing Protein 1 (Magi-1)
Length = 49
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LP GWE + YYVDH NR TQ+ +P
Sbjct: 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E RT +G+VY++++ T +TW P I
Sbjct: 9 LPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LPPGWE R G+ YY + TT + P +
Sbjct: 9 LPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +GR YY +H +Q+ P
Sbjct: 7 LPPGWEKRMS-NGRVYYFNHITNASQWERP 35
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE + +SGR YY +H +Q+ P
Sbjct: 11 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE + +SGR YY +H +Q+ P
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 32
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE + +SGR YY +H +Q+ P
Sbjct: 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE + +SGR YY +H +Q+ P
Sbjct: 11 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE + +SGR YY +H +Q+ P
Sbjct: 7 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
Syntaxin- Binding Protein 4
Length = 40
Score = 31.6 bits (70), Expect = 0.23, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LP GWE TA G Y+++H +TT + P ++
Sbjct: 8 LPYGWEEAYTADGIKYFINHVTQTTSWIHPVMS 40
>pdb|2KBU|A Chain A, Nmr Solution Structure Of Pin1 Ww Domain Mutant With Beta
Turn Mimic At Position 12
Length = 31
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
LPPGWE R S R YY +H +QF P
Sbjct: 2 LPPGWEKRM--SXRVYYFNHITNASQFERP 29
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 92 GQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQ 151
G+ Y+Y+ T STW P +L+ L P W+ ++ SG+ YY + + ++
Sbjct: 24 GRTYYYNTETKQSTWE---KPDDLKTPAEQLLSKCP--WKEYKSDSGKTYYYNSQTKESR 78
Query: 152 FTDPR 156
+ P+
Sbjct: 79 WAKPK 83
>pdb|2E45|A Chain A, Solution Structure Of Fe65 Ww Domain
Length = 55
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
DLP G+ +R Y++H+PTG + W P
Sbjct: 19 DLPAGW-MRVQDTSGTYYWHIPTGTTQWEPP 48
>pdb|2HO2|A Chain A, Structure Of Human Fe65-Ww Domain In Complex With Hmena
Peptide.
pdb|2IDH|A Chain A, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|B Chain B, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|C Chain C, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|D Chain D, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|E Chain E, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|F Chain F, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|G Chain G, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|H Chain H, Crystal Structure Of Human Fe65 Ww Domain
pdb|2OEI|A Chain A, Crystal Structure Of Human Fe65-Ww Domain In Complex With
Human Mena Peptide
Length = 38
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
DLP G+ +R Y++H+PTG + W P
Sbjct: 3 DLPAGW-MRVQDTSGTYYWHIPTGTTQWEPP 32
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 138 GRYYYVDHNNRTTQFTDPRLTPAIIQNLVKTL 169
GR V +N R T F DP AI +LVK L
Sbjct: 389 GRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 142 YVDHNNRTTQFTDPRLTPAIIQNLVKTLNVLSKH 175
Y+DHN T F DPR+ II + K LN S H
Sbjct: 11 YLDHN--ATTFIDPRVKEFIISLMDKELNPSSAH 42
>pdb|1D3Y|A Chain A, Structure Of The Dna Topoisomerase Vi A Subunit
pdb|1D3Y|B Chain B, Structure Of The Dna Topoisomerase Vi A Subunit
Length = 301
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 141 YYVDHNNRTTQFTDPRLTPAIIQNLVKTLNVLSKHL 176
YYV N +F D + + +I++L L VL +HL
Sbjct: 34 YYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHL 69
>pdb|3EWL|A Chain A, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
pdb|3EWL|B Chain B, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
Length = 142
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 112 PKELRPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAI 161
P E R E AT+ P GW V +G + RT Q D R TP I
Sbjct: 71 PDENREEWATKAVYXPQGWIVGWNKAG-------DIRTRQLYDIRATPTI 113
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 72 SLLQQPPDLPHGYEIRTTQQGQV 94
++L QPPD HG +R T QG+V
Sbjct: 655 AILSQPPDTIHG-SLRVTVQGEV 676
>pdb|3PH9|A Chain A, Crystal Structure Of The Human Anterior Gradient Protein 3
pdb|3PH9|B Chain B, Crystal Structure Of The Human Anterior Gradient Protein 3
Length = 151
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNLVKTLNVLSKHL 176
+ P VR +GRY +NR + +PR P +I+N+ K L ++ L
Sbjct: 107 VDPSLTVRADIAGRY-----SNRLYTY-EPRDLPLLIENMKKALRLIQSEL 151
>pdb|4IND|A Chain A, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|B Chain B, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|C Chain C, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|D Chain D, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|E Chain E, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|F Chain F, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|G Chain G, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|H Chain H, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|I Chain I, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|J Chain J, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|K Chain K, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|L Chain L, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|M Chain M, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|N Chain N, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|O Chain O, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|P Chain P, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|Q Chain Q, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|R Chain R, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|S Chain S, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
pdb|4IND|T Chain T, The Triple Jelly Roll Fold And Turret Assembly In An
Archaeal Virus
Length = 387
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 84 YEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGN 125
Y+I T +QG +Y+ LP G++ E E+ E GN
Sbjct: 119 YDIFTKEQGNIYYIQLPPGLAIL-------EFSLERVFEKGN 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,841,712
Number of Sequences: 62578
Number of extensions: 194988
Number of successful extensions: 514
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 139
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)