RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8387
(176 letters)
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 108 bits (272), Expect = 1e-31
Identities = 61/83 (73%), Positives = 68/83 (81%)
Query: 76 QPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQT 135
PPDLP GYE RTTQQGQVYF H TGVSTWHDPR+P++L ELG LPPGWE+R T
Sbjct: 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNT 65
Query: 136 ASGRYYYVDHNNRTTQFTDPRLT 158
A+GR Y+VDHNNRTTQFTDPRL+
Sbjct: 66 ATGRVYFVDHNNRTTQFTDPRLS 88
Score = 56.4 bits (136), Expect = 2e-11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTP 159
LP G+E R T G+ Y++ + + DPR+
Sbjct: 10 LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPR 43
Score = 45.6 bits (108), Expect = 2e-07
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
++ LP G+EIR T G+VYF + + DPR+
Sbjct: 51 EELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 88
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 96.1 bits (239), Expect = 9e-27
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASG 138
LP G+E + +VYF + + W DPR + G LPPGWE+R TA+G
Sbjct: 12 PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQG--QEVSLINEGPLPPGWEIRYTAAG 69
Query: 139 RYYYVDHNNRTTQFTDPR 156
++VDHN R T F DPR
Sbjct: 70 ERFFVDHNTRRTTFEDPR 87
Score = 57.2 bits (138), Expect = 9e-12
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
LG LP GWE + + R Y+V+H NRTTQ+ DPR
Sbjct: 4 EFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43
Score = 41.8 bits (98), Expect = 5e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+EIR T G+ +F T +T+ DPR
Sbjct: 52 INEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 80.3 bits (198), Expect = 9e-21
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 83 GYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASGRYYY 142
++ G++Y+Y+ T STW P+ GW+ +TA G+ YY
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLL-----RENGWKAAKTADGKVYY 57
Query: 143 VDHNNRTTQFTDPRL 157
+ R T +T P
Sbjct: 58 YNPTTRETSWTIPAF 72
Score = 44.1 bits (104), Expect = 7e-07
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
++ +G++ T G+VY+Y+ T ++W P K+
Sbjct: 36 EELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKK 75
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 72.7 bits (179), Expect = 5e-18
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
P + +LG LPPGWE R GR ++++HN + TQ+ DPR+
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43
Score = 43.8 bits (104), Expect = 4e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E RT G+V+F + + W DPR+
Sbjct: 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 71.1 bits (175), Expect = 1e-17
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
P + G LP GWE T G YY++H N+TT + DPRL
Sbjct: 3 PNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43
Score = 45.0 bits (107), Expect = 2e-07
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
LP G+E T +G++Y+ + ++W DPR+
Sbjct: 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 71.2 bits (175), Expect = 1e-17
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPA 160
P + E LPP W ++ +GR +++DH +R T + DPR A
Sbjct: 2 PLGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45
Score = 39.2 bits (92), Expect = 2e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP + ++ G+ +F + +TW DPR
Sbjct: 11 LPPRWSMQVAPNGRTFFIDHASRRTTWIDPR 41
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 71.3 bits (175), Expect = 2e-17
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 109 PRIPKELRPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTP 159
P E G LPPGWE+R TA+G ++VDHN R T F DPR
Sbjct: 2 PLGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA 52
Score = 42.4 bits (100), Expect = 2e-06
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 SGGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPK 113
SL+ + P LP G+EIR T G+ +F T +T+ DPR
Sbjct: 8 FHMVSLINEGP-LPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA 52
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 70.6 bits (174), Expect = 2e-17
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
+G LPPGWE R GR YYVDH RTT + P L
Sbjct: 1 GRAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
Score = 40.2 bits (95), Expect = 7e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
+ LP G+E R G++Y+ T +TW P +
Sbjct: 2 RAMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 70.3 bits (173), Expect = 3e-17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
G LP GWE T G YY++H N+TT + DPRL
Sbjct: 1 GAMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
Score = 45.2 bits (108), Expect = 1e-07
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E TQ G++Y+ + ++W DPR+
Sbjct: 7 LPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 72.0 bits (176), Expect = 4e-17
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 71 NSLLQQPPDLPHGYEIRTTQQGQVY-FYHLPTGVSTWHDPRIPKELRPEQATELGNLPPG 129
++L + T + + + R A LP G
Sbjct: 17 FTVLHANYSAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTRLELPRG 76
Query: 130 WEVRQTASGRYYYVDHNNRTTQFTDPRL 157
WE++ G+ ++VDHN+R T F DPR+
Sbjct: 77 WEIKTDQQGKSFFVDHNSRATTFIDPRI 104
Score = 45.8 bits (108), Expect = 3e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 71 NSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
N +LP G+EI+T QQG+ +F + +T+ DPRIP +
Sbjct: 64 NMFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQ 107
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 70.1 bits (172), Expect = 4e-17
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQ 163
LG LP WE+ T +G Y++DHN +TT + DPR
Sbjct: 6 SGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQS 52
Score = 43.6 bits (103), Expect = 6e-07
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 70 GNSLLQQPPD----LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQAT 121
G+S D LP +E+ T+ G+VYF T ++W DPR + + ++
Sbjct: 1 GSSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGPSS 56
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 69.0 bits (170), Expect = 8e-17
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LPPGWE + GR YYV+HNNR+TQ+ P L
Sbjct: 5 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
Score = 42.5 bits (101), Expect = 1e-06
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 76 QPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
PP LP G+E + G+ Y+ + + WH P +
Sbjct: 2 SPP-LPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 69.3 bits (170), Expect = 1e-16
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 119 QATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
E G LP GWEVR +GR +++DHN +TT + DPRL
Sbjct: 6 SEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
Score = 42.7 bits (101), Expect = 1e-06
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 68 SGGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
+ G S ++Q LP G+E+R G+ +F T +TW DPR+
Sbjct: 2 AMGPSEIEQGF-LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 68.8 bits (169), Expect = 1e-16
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPA 160
++ LPPGWE R GR YYVDH + T + P +
Sbjct: 2 SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSS 42
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
LP G+E R Q G+VY+ +TW P P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 68.7 bits (169), Expect = 1e-16
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LPPGWE+R +GR +++DHN +TT + DPRL
Sbjct: 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 42.2 bits (100), Expect = 2e-06
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 70 GNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
G+ +Q LP G+E+R G+ +F T +TW DPR+
Sbjct: 1 GSPGIQSF--LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 68.8 bits (169), Expect = 1e-16
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 121 TELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LPPGWE R G+ YY + TT + P +
Sbjct: 4 GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41
Score = 42.2 bits (100), Expect = 2e-06
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 76 QPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
+ LP G+E RT +G+VY++++ T +TW P I E
Sbjct: 5 RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIILE 43
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 68.4 bits (168), Expect = 2e-16
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LPPGW+ +T +G+ YY +HN +T+ +TDPR++
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
Score = 43.3 bits (103), Expect = 6e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
LP G++ T G+ Y+Y+ T STW DPR+
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 68.4 bits (168), Expect = 2e-16
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
++ LP GWE+R T G Y+VDHN RTT + DPR
Sbjct: 2 SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
Score = 40.6 bits (96), Expect = 6e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+E+R T G YF +T+ DPR
Sbjct: 7 GLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 68.1 bits (167), Expect = 2e-16
Identities = 28/38 (73%), Positives = 32/38 (84%)
Query: 121 TELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
G LPPGWE+R TA+GR Y+VDHNNRTTQFTDPRL+
Sbjct: 3 LGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40
Score = 44.2 bits (105), Expect = 2e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
LP G+EIR T G+VYF + + DPR+
Sbjct: 8 LPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 68.0 bits (167), Expect = 2e-16
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
++ LP GWE TA G Y+++H +TT + P ++
Sbjct: 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVMS 40
Score = 39.9 bits (94), Expect = 1e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP+G+E T G YF + T ++W P +
Sbjct: 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 67.7 bits (166), Expect = 3e-16
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LP GWE+ +T+SG+ Y+ +H ++TT + DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41
Score = 44.2 bits (105), Expect = 3e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELR 116
P LP G+E+ T GQ YF + +TW DPR +
Sbjct: 5 DDVP-LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 68.9 bits (168), Expect = 3e-16
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 77 PPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTA 136
+ + G+ Y+Y+ T STW P K + W+ ++
Sbjct: 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL-----LSKCPWKEYKSD 63
Query: 137 SGRYYYVDHNNRTTQFTDPR 156
SG+ YY + + +++ P+
Sbjct: 64 SGKTYYYNSQTKESRWAKPK 83
Score = 43.9 bits (103), Expect = 1e-06
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
A W ++ GR YY + + + + P
Sbjct: 3 DVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 42
Score = 38.1 bits (88), Expect = 1e-04
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 85 EIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQ 119
+ + G+ Y+Y+ T S W P+ ++L +
Sbjct: 58 KEYKSDSGKTYYYNSQTKESRWAKPKELEDLEGLE 92
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 67.8 bits (166), Expect = 4e-16
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPA 160
LPPGW V T GR YY+DHN TT ++ P +
Sbjct: 12 LPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46
Score = 40.4 bits (95), Expect = 1e-05
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 69 GGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
G + + LP G+ + T +G+ Y+ T + W P
Sbjct: 1 GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPL 42
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 66.8 bits (164), Expect = 5e-16
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP GWE R+ A GR YYV+HNNRTT +T P +
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
Score = 39.8 bits (94), Expect = 1e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
P LP G+E R +G+ Y+ + +TW P +
Sbjct: 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 62.5 bits (152), Expect = 4e-14
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNLVK 167
G+LP GWE +G+ ++VDH N+ T + DPRL + N K
Sbjct: 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTK 53
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
+ DLP+G+E T + GQV+F +T+ DPR+
Sbjct: 7 RVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 62.0 bits (151), Expect = 5e-14
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 116 RPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
LP GWE + YYVDH NR TQ+ +P
Sbjct: 4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45
Score = 39.3 bits (92), Expect = 2e-05
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 68 SGGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
S G+S L +LP G+E +Y+ + + +P P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 60.0 bits (146), Expect = 3e-13
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
++ LPPGW+ + GR YYV+ T + P +
Sbjct: 2 SSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSSS 40
Score = 39.2 bits (92), Expect = 2e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 76 QPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G++ + QG+ Y+ + T +TW P
Sbjct: 4 GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 59.9 bits (145), Expect = 5e-13
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 116 RPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNL 165
LP GWE + YYVDH NR TQ+ +P L + L
Sbjct: 4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQL 53
Score = 42.2 bits (99), Expect = 2e-06
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 68 SGGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGN 125
S G+S L +LP G+E +Y+ + + +P + + + + + +
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLESGPSS 59
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 52.9 bits (127), Expect = 2e-10
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 122 ELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPA 160
E LPPGWE +++ YYVDH N+ Q+ P +
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPSS 48
Score = 30.6 bits (69), Expect = 0.038
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 76 QPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
+ LP G+E + + Y+ + + P P
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 52.0 bits (124), Expect = 8e-10
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASGR 139
+ T +G Y+Y L +G S W K + + + W + G
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWE-----KPEGFQGDLKKTAVKTVWVEGLSEDGF 57
Query: 140 YYYVDHNNRTTQFTDP 155
YY + +++ P
Sbjct: 58 TYYYNTETGESRWEKP 73
Score = 34.2 bits (78), Expect = 0.002
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
+ + + ++ G Y+Y+ TG S W P
Sbjct: 39 LKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73
Score = 33.9 bits (77), Expect = 0.004
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
W T+ G +YY D + +Q+ P
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPE 33
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 52.3 bits (126), Expect = 1e-08
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAIIQNL 165
A++LG LP GWE+R T + R Y+VDHN +TT + DPRL ++ QN+
Sbjct: 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNV 48
Score = 28.0 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELR 116
LP G+E+R T +VYF T +TW DPR+P L
Sbjct: 9 LPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLD 45
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 44.3 bits (104), Expect = 5e-06
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
Q ++ WE + + YY++H +TT + P++T
Sbjct: 3 ASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMT 44
Score = 26.2 bits (57), Expect = 6.9
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELRP 117
+ +E + Y+ + T + W P++ + +
Sbjct: 12 VQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQS 49
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 41.0 bits (96), Expect = 4e-05
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 126 LPPGWEVRQTAS-GRYYYVDHNNRTTQFTDPRLTPAIIQN 164
LPP W +R + S + Y+++ + + + P T + N
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEVLN 47
Score = 31.8 bits (72), Expect = 0.077
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 78 PDLPHGYEIRTTQQ-GQVYFYHLPTGVSTWHDPRIPKE 114
LP + IR ++ + YF + T S+W P +
Sbjct: 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 4e-04
Identities = 36/183 (19%), Positives = 56/183 (30%), Gaps = 52/183 (28%)
Query: 10 LYHSGNYNNSNLILNNSHVNNNNTSSPALPLRSR----TEDQQHNHRLLVQQPRKRGASK 65
L S Y N L+L N V N + A L + T +Q L +
Sbjct: 237 LLKSKPYENCLLVLLN--VQNAKAWN-AFNLSCKILLTTRFKQ-VTDFLSAATTTHISLD 292
Query: 66 KCSGG-----------NSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
S L +P DLP E+ TT P +S I +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTT---------NPRRLSI-----IAES 336
Query: 115 LRPEQATELGNLPPGWEVRQTASGRYYYVDHN--NRTTQFTDPRLTPAIIQNLVKTLNVL 172
+R AT W+ + +V+ + + + L PA + + L+V
Sbjct: 337 IRDGLAT--------WD-------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 173 SKH 175
Sbjct: 382 PPS 384
Score = 37.9 bits (87), Expect = 0.001
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 55/188 (29%)
Query: 4 ITLVVL--LYHSGNYNNSNLILNNSHV-------NNNNTSS-PALPLRSRT--EDQQHNH 51
I ++L ++ ++ +++N H +T S P++ L + E++ H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 52 RLLVQQPRKRGASKKCSGGNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
R +V K + L+ D Y ++ H+ H
Sbjct: 447 RSIVDHYNIP----KTFDSDDLIPPYLD---QY----------FYSHIG-----HH---- 480
Query: 112 PKELRPEQATELGNLPPGWEVRQTASGRYYYVDHN---NRTTQFTDPRLTPAIIQNLVKT 168
L+ + E L ++D + + I N ++
Sbjct: 481 ---LKNIEHPERMTLFRMV-----------FLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 169 LNVLSKHL 176
L ++
Sbjct: 527 LKFYKPYI 534
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 37.5 bits (87), Expect = 6e-04
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQTAS-GRYYYVDHNNRTTQFTDP 155
LPPGWE + S GR YY +H +Q+ P
Sbjct: 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 32.9 bits (75), Expect = 0.026
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 78 PDLPHGYEIRTTQ-QGQVYFYHLPTGVSTWHDP 109
LP G+E ++ G+VY+++ T S W P
Sbjct: 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 35.5 bits (81), Expect = 7e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPA 160
P +LP GW Q SG YY+ TTQ+ P
Sbjct: 11 PNAFETDSDLPAGWMRVQDTSGTYYW-HIPTGTTQWEPPGRASP 53
Score = 32.4 bits (73), Expect = 0.009
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 70 GNSLLQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
+ + DLP G+ G Y++H+PTG + W P
Sbjct: 10 NPNAFETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 48
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 34.1 bits (78), Expect = 0.002
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 126 LPPGWEVRQTAS-GRYYYVDHNNRTTQFTDPRLTP 159
LP GWEVR + S YY + R +++ P T
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTD 42
Score = 29.1 bits (65), Expect = 0.11
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 80 LPHGYEIRTTQQ-GQVYFYHLPTGVSTWHDP 109
LP G+E+R + Y+++ T S W P
Sbjct: 8 LPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 32.7 bits (74), Expect = 0.005
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 75 QQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
LP G+ + Y++H+P+G + W P
Sbjct: 4 GSSGGLPPGWR-KIHDAAGTYYWHVPSGSTQWQRP 37
Score = 30.8 bits (69), Expect = 0.023
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 119 QATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDP 155
+ G LPPGW A+G YY+ + +TQ+ P
Sbjct: 2 SSGSSGGLPPGWRKIHDAAGTYYW-HVPSGSTQWQRP 37
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 31.5 bits (71), Expect = 0.015
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
T +G Y+Y L +G S W P
Sbjct: 13 ITSEGYHYYYDLISGASQWEKP 34
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 28.9 bits (65), Expect = 0.094
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
T G+ Y+Y+ T STW P
Sbjct: 12 KTADGKTYYYNNRTLESTWEKP 33
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 29.1 bits (65), Expect = 0.096
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
+ G+ Y+Y+ T STW P
Sbjct: 18 KSPDGRTYYYNTETKQSTWEKP 39
Score = 25.6 bits (56), Expect = 1.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 120 ATELGNLPPGWEVRQTASGRYYYVDHNNRTTQ 151
+G+ W ++ GR YY +N T Q
Sbjct: 4 RASVGSAKSMWTEHKSPDGRTYY--YNTETKQ 33
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 28.5 bits (63), Expect = 0.14
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 125 NLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTP 159
+LP GW Q SG YY+ TTQ+ P
Sbjct: 3 DLPAGWMRVQDTSGTYYW-HIPTGTTQWEPPGRAS 36
Score = 28.1 bits (62), Expect = 0.23
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
DLP G+ G Y++H+PTG + W P
Sbjct: 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 32
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 28.2 bits (63), Expect = 0.17
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
T G+VY+Y+ T S W P
Sbjct: 16 KTPDGKVYYYNARTRESAWTKP 37
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein;
2.40A {Mycobacterium smegmatis str}
Length = 621
Score = 29.6 bits (66), Expect = 0.66
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
+L +P + + R + + + DP++
Sbjct: 279 AATFAQLSAIP-DVRTARIVTPRVMQLTLRAQQPKLADPQV 318
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 34 SSPALPLRSRTE 45
S+PAL +++ E
Sbjct: 36 SAPALAIKATME 47
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 28.0 bits (63), Expect = 1.8
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 114 ELRPEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAI 161
+ ++ + Y Y+ N + F D ++ A+
Sbjct: 241 NVPATDYKTAEKFN-NLKIVTDLALSYVYIGWNEKNELFKDKKVRQAL 287
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 27.8 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 69 GGNS---LLQQPPDLPHGYEIRTTQQGQV 94
G + LL QPP G +R T+QG++
Sbjct: 589 GAPAHAALLSQPPGSLKG-GLRVTEQGEM 616
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.5 bits (55), Expect = 3.3
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 89 TQQGQVYFYHLPTGVSTWHDPRIPKELR-PEQATELGNLPPGWEVRQTASG 138
T +V+FY+ T +S W P +L ++ PP + +SG
Sbjct: 27 TGDERVFFYNPTTRLSMW---DRPDDLIGRADVDKIIQEPP-HKKSGPSSG 73
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Length = 970
Score = 26.7 bits (59), Expect = 4.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 61 RGASKKCSGGNS---LLQQPPDLPHGYEIRTTQQGQV 94
RG + GG + +L QPPD +G IR T QG+V
Sbjct: 641 RGGTVGRGGGPTHLAILSQPPDTING-SIRVTVQGEV 676
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.398
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,611,451
Number of extensions: 141751
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 98
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)