RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8387
(176 letters)
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 67.5 bits (165), Expect = 1e-16
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 117 PEQATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLTPAII 162
P + +LG LPPGWE R GR ++++HN + TQ+ DPR+ I
Sbjct: 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48
Score = 47.4 bits (113), Expect = 8e-09
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
LP G+E RT G+V+F + + W DPR+
Sbjct: 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 65.1 bits (159), Expect = 1e-15
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 116 RPE-QATELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRL 157
PE LG LP GWE + + R Y+V+H NRTTQ+ DPR
Sbjct: 2 SPEFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44
Score = 47.0 bits (112), Expect = 1e-08
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 78 PDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRI 111
LP G+E + +VYF + + W DPR
Sbjct: 11 GPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 62.7 bits (153), Expect = 9e-15
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 124 GNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
G LPPGWE+R TA+G ++VDHN R T F DPR
Sbjct: 1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33
Score = 44.2 bits (105), Expect = 9e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 LPHGYEIRTTQQGQVYFYHLPTGVSTWHDPR 110
LP G+EIR T G+ +F T +T+ DPR
Sbjct: 3 LPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 46
Score = 60.5 bits (147), Expect = 8e-14
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
LP GWE+ +T+SG+ Y+ +H ++TT + DPR
Sbjct: 9 LPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41
Score = 47.8 bits (114), Expect = 5e-09
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 74 LQQPPDLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIP 112
+ LP G+E+ T GQ YF + +TW DPR
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 51.6 bits (124), Expect = 1e-10
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 126 LPPGWEVRQT-ASGRYYYVDHNNRTTQFTDP 155
LPPGWE R + +SGR YY +H +Q+ P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
Score = 37.3 bits (87), Expect = 3e-05
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 80 LPHGYEIRTTQQ-GQVYFYHLPTGVSTWHDP 109
LP G+E R ++ G+VY+++ T S W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 38.6 bits (90), Expect = 1e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 126 LPPGWEVRQTASGRYYYVDHNNRTTQFTDPR 156
W +TA G+ YY ++ + + P+
Sbjct: 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
Score = 34.3 bits (79), Expect = 5e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKELR 116
+ T G+ Y+Y+ T STW P+EL+
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEK---PQELK 37
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 37.1 bits (86), Expect = 5e-05
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 81 PHGYEIRTTQQGQVYFYHLPTGVSTWHDPRIPKE 114
+G++ T G+VY+Y+ T ++W P K+
Sbjct: 13 ENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKK 46
Score = 36.7 bits (85), Expect = 6e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 121 TELGNLPPGWEVRQTASGRYYYVDHNNRTTQFTDPRLT 158
EL GW+ +TA G+ YY + R T +T P
Sbjct: 7 EELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 44
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 30.2 bits (68), Expect = 0.013
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
T +G Y+Y L +G S W P
Sbjct: 7 ITSEGYHYYYDLISGASQWEKP 28
Score = 24.4 bits (53), Expect = 1.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 130 WEVRQTASGRYYYVDHNNRTTQFTDP 155
W T+ G +YY D + +Q+ P
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKP 28
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor
protein-binding family B member 1, APBB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 28.7 bits (64), Expect = 0.041
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 79 DLPHGYEIRTTQQGQVYFYHLPTGVSTWHDP 109
DLP G+ R Y++H+PTG + W P
Sbjct: 2 DLPAGWM-RVQDTSGTYYWHIPTGTTQWEPP 31
Score = 25.6 bits (56), Expect = 0.57
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 125 NLPPGWEVRQTASGRYYY 142
+LP GW Q SG YY+
Sbjct: 2 DLPAGWMRVQDTSGTYYW 19
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 28.2 bits (63), Expect = 0.053
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
G++Y+Y+ T STW P
Sbjct: 8 KDASGRIYYYNTLTKKSTWEKP 29
Score = 24.3 bits (53), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 130 WEVRQTASGRYYYVDHNNRTTQFTDP 155
W+ + ASGR YY + + + + P
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKP 29
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.2 bits (63), Expect = 0.067
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 88 TTQQGQVYFYHLPTGVSTWHDP 109
+ G+ Y+Y+ T STW P
Sbjct: 7 KSPDGRTYYYNTETKQSTWEKP 28
Score = 24.7 bits (54), Expect = 1.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 130 WEVRQTASGRYYYVDHNNRTTQFTDP 155
W ++ GR YY + + + + P
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 27.4 bits (60), Expect = 0.71
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 96 FYHLPTGVSTWHDPRIPKELRPEQATELGNLPPGWEVRQTASG-RYYYVDHNNRTTQFTD 154
+ L G+ TW+ + T G V G + Y ++
Sbjct: 46 YDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIR 105
Query: 155 PRL 157
+
Sbjct: 106 DII 108
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 220
Score = 27.0 bits (58), Expect = 1.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 112 PKELRPEQATELGNLPPGWEVR 133
KE ++ TE+G +P WE+
Sbjct: 3 YKEENFKK-TEIGEIPEDWEIV 23
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding
family B member 3, APBB3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 26
Score = 24.1 bits (52), Expect = 1.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 126 LPPGWEVRQTASGRYYY 142
LPPGW A+G YY+
Sbjct: 2 LPPGWRKIHDAAGTYYW 18
>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 298
Score = 26.5 bits (58), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 141 YYVDHNNRTTQFTDPRLTPAIIQNLVKTLNVLSKHL 176
YYV N +F D + + +I++L L VL +HL
Sbjct: 31 YYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHL 66
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 24.8 bits (54), Expect = 2.6
Identities = 9/34 (26%), Positives = 10/34 (29%), Gaps = 9/34 (26%)
Query: 118 EQATELGNLPPGW--EVRQTASGR-------YYY 142
E + L PGW SG YY
Sbjct: 3 EDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQ 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.398
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,565
Number of extensions: 28533
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 31
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)