Query psy8389
Match_columns 156
No_of_seqs 173 out of 408
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:22:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039|consensus 99.9 1.2E-23 2.7E-28 194.7 7.1 117 40-156 507-646 (646)
2 PF08030 NAD_binding_6: Ferric 99.7 2.2E-18 4.7E-23 130.3 5.2 106 40-145 34-156 (156)
3 PLN02844 oxidoreductase/ferric 99.1 1E-10 2.2E-15 110.5 5.2 54 103-156 651-720 (722)
4 PLN02631 ferric-chelate reduct 98.8 3.8E-09 8.2E-14 99.6 5.2 52 103-156 642-697 (699)
5 PLN02292 ferric-chelate reduct 98.8 3.7E-09 8.1E-14 99.7 5.1 52 102-156 645-700 (702)
6 cd06186 NOX_Duox_like_FAD_NADP 98.7 1.3E-08 2.9E-13 80.2 4.9 67 40-156 138-210 (210)
7 cd06184 flavohem_like_fad_nad_ 97.2 0.0011 2.3E-08 53.7 6.7 49 105-156 192-243 (247)
8 cd06215 FNR_iron_sulfur_bindin 97.0 0.002 4.3E-08 51.3 6.3 97 41-156 132-231 (231)
9 cd06216 FNR_iron_sulfur_bindin 97.0 0.0024 5.1E-08 51.6 6.5 91 41-156 151-243 (243)
10 PRK08051 fre FMN reductase; Va 96.9 0.0019 4.1E-08 52.2 5.6 95 41-156 131-229 (232)
11 cd06190 T4MO_e_transfer_like T 96.6 0.0053 1.2E-07 49.0 6.0 101 40-156 127-231 (232)
12 cd06185 PDR_like Phthalate dio 96.6 0.0075 1.6E-07 47.4 6.6 46 107-156 162-210 (211)
13 PF00175 NAD_binding_1: Oxidor 96.6 0.0068 1.5E-07 42.6 5.7 84 39-142 23-109 (109)
14 cd06211 phenol_2-monooxygenase 96.6 0.0075 1.6E-07 48.6 6.6 32 125-156 204-238 (238)
15 cd06191 FNR_iron_sulfur_bindin 96.5 0.0069 1.5E-07 48.4 5.8 31 126-156 198-231 (231)
16 PRK10684 HCP oxidoreductase, N 96.3 0.011 2.4E-07 50.4 6.3 31 126-156 204-237 (332)
17 cd06189 flavin_oxioreductase N 96.3 0.01 2.2E-07 47.4 5.6 33 124-156 189-224 (224)
18 cd06212 monooxygenase_like The 96.2 0.018 3.9E-07 46.1 6.8 32 125-156 197-231 (232)
19 cd06214 PA_degradation_oxidore 96.2 0.014 3.1E-07 46.7 6.2 25 124-148 205-229 (241)
20 cd06197 FNR_like_2 FAD/NAD(P) 96.2 0.0043 9.2E-08 50.1 3.0 28 127-156 192-219 (220)
21 cd06210 MMO_FAD_NAD_binding Me 96.0 0.021 4.6E-07 45.6 6.1 31 126-156 202-235 (236)
22 cd06194 FNR_N-term_Iron_sulfur 95.8 0.018 3.9E-07 45.6 5.2 25 124-148 186-210 (222)
23 COG4097 Predicted ferric reduc 95.6 0.0043 9.3E-08 55.8 1.0 31 126-156 402-435 (438)
24 TIGR02160 PA_CoA_Oxy5 phenylac 95.4 0.04 8.8E-07 47.1 6.2 91 41-148 138-230 (352)
25 cd06183 cyt_b5_reduct_like Cyt 95.3 0.035 7.6E-07 44.0 5.0 89 40-148 133-225 (234)
26 PRK13289 bifunctional nitric o 95.2 0.06 1.3E-06 46.7 6.5 24 125-148 358-381 (399)
27 cd06195 FNR1 Ferredoxin-NADP+ 95.0 0.02 4.3E-07 46.2 2.8 33 124-156 200-241 (241)
28 cd06198 FNR_like_3 NAD(P) bind 94.7 0.02 4.4E-07 45.3 2.0 33 124-156 180-215 (216)
29 cd06217 FNR_iron_sulfur_bindin 94.6 0.024 5.3E-07 45.1 2.3 32 125-156 201-235 (235)
30 cd06188 NADH_quinone_reductase 94.3 0.054 1.2E-06 45.1 4.0 33 124-156 248-283 (283)
31 PRK08345 cytochrome-c3 hydroge 94.0 0.12 2.6E-06 43.5 5.4 24 124-147 211-234 (289)
32 cd06209 BenDO_FAD_NAD Benzoate 94.0 0.037 8E-07 44.2 2.2 33 124-156 192-227 (228)
33 cd06221 sulfite_reductase_like 93.7 0.13 2.8E-06 42.3 5.0 25 124-148 189-213 (253)
34 cd06213 oxygenase_e_transfer_s 93.7 0.054 1.2E-06 43.2 2.6 32 125-156 193-227 (227)
35 cd06187 O2ase_reductase_like T 92.9 0.079 1.7E-06 41.8 2.4 24 125-148 190-213 (224)
36 PRK11872 antC anthranilate dio 92.8 0.065 1.4E-06 46.1 2.0 23 126-148 302-324 (340)
37 cd06220 DHOD_e_trans_like2 FAD 92.5 0.12 2.6E-06 41.7 3.0 30 127-156 169-200 (233)
38 cd06218 DHOD_e_trans FAD/NAD b 92.0 0.15 3.3E-06 41.7 3.1 32 124-155 179-212 (246)
39 PRK05713 hypothetical protein; 91.5 0.12 2.5E-06 43.9 1.9 23 126-148 275-297 (312)
40 PRK05464 Na(+)-translocating N 90.7 0.16 3.5E-06 44.8 2.2 33 124-156 372-407 (409)
41 KOG0534|consensus 90.7 0.87 1.9E-05 39.4 6.6 82 40-139 185-267 (286)
42 cd00322 FNR_like Ferredoxin re 90.5 0.17 3.7E-06 39.4 2.0 24 124-147 190-213 (223)
43 PRK10926 ferredoxin-NADP reduc 90.4 0.18 3.8E-06 41.4 2.0 23 125-147 206-228 (248)
44 TIGR01941 nqrF NADH:ubiquinone 90.2 0.2 4.3E-06 44.2 2.2 33 124-156 368-403 (405)
45 PRK06222 ferredoxin-NADP(+) re 90.1 0.2 4.3E-06 42.0 2.1 22 127-148 183-204 (281)
46 PRK07609 CDP-6-deoxy-delta-3,4 90.0 0.18 3.9E-06 42.9 1.9 24 125-148 298-321 (339)
47 cd06196 FNR_like_1 Ferredoxin 89.8 0.22 4.7E-06 39.3 2.0 22 126-147 187-208 (218)
48 cd06208 CYPOR_like_FNR These f 89.3 0.21 4.5E-06 41.8 1.6 23 124-146 238-260 (286)
49 cd06193 siderophore_interactin 89.1 0.24 5.3E-06 40.1 1.9 23 124-146 197-219 (235)
50 PLN03116 ferredoxin--NADP+ red 89.1 0.24 5.3E-06 42.0 1.9 23 125-147 259-281 (307)
51 cd06201 SiR_like2 Cytochrome p 88.4 0.3 6.4E-06 41.2 1.9 22 125-146 245-266 (289)
52 cd06192 DHOD_e_trans_like FAD/ 88.3 0.33 7.2E-06 39.2 2.1 22 126-147 179-200 (243)
53 cd06200 SiR_like1 Cytochrome p 88.1 0.27 5.9E-06 40.2 1.6 21 126-146 203-224 (245)
54 cd06182 CYPOR_like NADPH cytoc 87.4 0.3 6.6E-06 40.7 1.4 21 127-147 216-237 (267)
55 cd06219 DHOD_e_trans_like1 FAD 85.6 0.55 1.2E-05 38.4 2.0 21 127-147 182-202 (248)
56 cd06206 bifunctional_CYPOR The 85.5 0.45 9.7E-06 41.7 1.6 22 125-146 328-349 (384)
57 PRK00054 dihydroorotate dehydr 85.1 0.58 1.3E-05 38.2 2.0 22 127-148 183-204 (250)
58 COG1018 Hmp Flavodoxin reducta 85.1 0.69 1.5E-05 39.1 2.5 31 126-156 197-230 (266)
59 COG0543 UbiB 2-polyprenylpheno 84.3 0.69 1.5E-05 38.4 2.1 24 124-147 191-214 (252)
60 PRK08221 anaerobic sulfite red 83.0 1.5 3.1E-05 36.4 3.5 24 124-147 191-214 (263)
61 PLN03115 ferredoxin--NADP(+) r 82.7 0.91 2E-05 40.2 2.3 22 125-146 319-340 (367)
62 PLN02292 ferric-chelate reduct 82.2 1.9 4E-05 41.6 4.3 41 41-81 465-510 (702)
63 PTZ00274 cytochrome b5 reducta 82.1 0.84 1.8E-05 39.6 1.8 18 126-143 264-281 (325)
64 TIGR02911 sulfite_red_B sulfit 82.0 0.95 2.1E-05 37.5 2.0 24 124-147 189-212 (261)
65 TIGR03224 benzo_boxA benzoyl-C 81.8 0.86 1.9E-05 40.7 1.8 19 126-144 364-382 (411)
66 PRK05802 hypothetical protein; 80.9 1.1 2.5E-05 38.6 2.2 19 128-146 257-275 (320)
67 cd06207 CyPoR_like NADPH cytoc 80.3 0.78 1.7E-05 40.2 1.0 22 126-147 330-352 (382)
68 PTZ00319 NADH-cytochrome B5 re 79.0 1.5 3.3E-05 37.2 2.4 22 125-146 267-289 (300)
69 cd06199 SiR Cytochrome p450- l 78.6 0.96 2.1E-05 39.4 1.1 21 126-146 308-329 (360)
70 cd06202 Nitric_oxide_synthase 78.6 1.3 2.9E-05 39.2 1.9 22 125-146 350-371 (406)
71 cd06204 CYPOR NADPH cytochrome 76.8 1.3 2.8E-05 39.5 1.3 21 126-146 364-385 (416)
72 PRK12779 putative bifunctional 75.3 1.9 4E-05 42.7 2.1 22 127-148 849-870 (944)
73 PRK12778 putative bifunctional 75.2 1.9 4.1E-05 41.0 2.1 22 127-148 183-204 (752)
74 TIGR01715 phage_lam_T phage ta 72.3 1.9 4.2E-05 32.0 1.1 15 106-120 1-15 (100)
75 PF06223 Phage_tail_T: Minor t 71.8 1.9 4E-05 32.3 0.9 16 105-120 5-20 (103)
76 PTZ00306 NADH-dependent fumara 70.8 2.6 5.6E-05 42.4 2.0 24 124-147 1128-1151(1167)
77 cd06203 methionine_synthase_re 69.5 2.8 6E-05 37.1 1.7 22 125-146 345-367 (398)
78 TIGR01931 cysJ sulfite reducta 68.3 2.4 5.2E-05 39.7 1.0 20 127-146 546-566 (597)
79 PRK12775 putative trifunctiona 60.6 5.6 0.00012 39.6 2.1 22 127-148 183-204 (1006)
80 PLN02252 nitrate reductase [NA 60.4 10 0.00022 37.6 3.7 24 124-147 854-878 (888)
81 PRK06214 sulfite reductase; Pr 54.1 9.3 0.0002 35.6 2.2 21 126-146 478-499 (530)
82 PRK14536 cysS cysteinyl-tRNA s 51.6 9.1 0.0002 35.4 1.7 12 122-133 20-31 (490)
83 PLN02946 cysteine-tRNA ligase 46.9 12 0.00026 35.3 1.8 11 123-133 78-88 (557)
84 PRK10953 cysJ sulfite reductas 43.7 14 0.00031 34.8 1.8 20 127-146 549-569 (600)
85 COG0215 CysS Cysteinyl-tRNA sy 43.3 15 0.00032 34.0 1.8 12 122-133 19-30 (464)
86 PRK14534 cysS cysteinyl-tRNA s 40.7 15 0.00032 34.0 1.3 10 124-133 20-29 (481)
87 PRK14535 cysS cysteinyl-tRNA s 37.2 20 0.00043 34.8 1.7 11 123-133 246-256 (699)
88 COG2871 NqrF Na+-transporting 36.9 36 0.00079 30.4 3.1 25 123-147 372-396 (410)
89 PRK11104 hemG protoporphyrinog 35.8 45 0.00097 26.1 3.2 39 94-133 47-88 (177)
90 PRK06703 flavodoxin; Provision 35.6 69 0.0015 23.8 4.1 36 100-135 54-94 (151)
91 PHA03302 envelope glycoprotein 33.7 31 0.00068 29.5 2.1 43 94-148 107-149 (253)
92 PLN02844 oxidoreductase/ferric 33.6 22 0.00049 34.5 1.4 41 41-81 457-500 (722)
93 PF03031 NIF: NLI interacting 32.9 80 0.0017 23.5 4.1 38 107-146 37-74 (159)
94 PF14980 TIP39: TIP39 peptide 32.5 46 0.001 21.8 2.3 17 2-18 20-36 (51)
95 PF11892 DUF3412: Domain of un 32.3 17 0.00037 28.0 0.3 21 8-28 50-70 (123)
96 PF01251 Ribosomal_S7e: Riboso 32.0 27 0.00059 28.7 1.4 15 8-22 72-86 (189)
97 COG0369 CysJ Sulfite reductase 31.6 28 0.0006 33.0 1.6 20 127-146 536-556 (587)
98 PF02675 AdoMet_dc: S-adenosyl 31.5 42 0.0009 24.2 2.3 17 124-140 70-86 (106)
99 PF12724 Flavodoxin_5: Flavodo 30.6 58 0.0013 24.2 3.0 40 93-133 43-85 (143)
100 PRK09267 flavodoxin FldA; Vali 30.1 71 0.0015 24.2 3.5 34 99-132 51-89 (169)
101 TIGR03447 mycothiol_MshC cyste 28.9 32 0.00069 31.3 1.5 12 123-134 34-45 (411)
102 TIGR03330 SAM_DCase_Bsu S-aden 28.8 36 0.00078 25.2 1.5 11 124-134 75-85 (112)
103 TIGR01752 flav_long flavodoxin 28.5 75 0.0016 24.4 3.4 34 99-132 49-87 (167)
104 PRK12359 flavodoxin FldB; Prov 26.3 82 0.0018 25.0 3.3 33 102-134 53-90 (172)
105 PTZ00399 cysteinyl-tRNA-synthe 26.1 41 0.00089 32.2 1.8 11 123-133 58-68 (651)
106 PF00650 CRAL_TRIO: CRAL/TRIO 25.5 1.3E+02 0.0028 21.7 4.1 40 108-147 82-122 (159)
107 PRK00458 S-adenosylmethionine 25.3 45 0.00098 25.4 1.5 19 124-142 88-107 (127)
108 TIGR00435 cysS cysteinyl-tRNA 24.3 44 0.00096 30.4 1.6 12 122-133 18-29 (465)
109 PF01337 Barstar: Barstar (bar 24.2 1.4E+02 0.003 20.5 3.8 35 103-138 25-62 (90)
110 PRK05568 flavodoxin; Provision 24.1 1.5E+02 0.0033 21.5 4.2 52 94-146 49-108 (142)
111 PRK00260 cysS cysteinyl-tRNA s 24.0 46 0.00099 30.2 1.6 12 122-133 20-31 (463)
112 KOG3829|consensus 24.0 28 0.0006 32.2 0.2 49 99-147 380-436 (486)
113 COG3871 Uncharacterized stress 23.7 1.1E+02 0.0024 24.1 3.5 66 4-79 6-72 (145)
114 PF09652 Cas_VVA1548: Putative 23.4 28 0.00061 25.6 0.1 14 47-60 1-15 (93)
115 PRK04025 S-adenosylmethionine 23.1 57 0.0012 25.3 1.8 21 124-144 76-97 (139)
116 PHA02629 A-type inclusion body 22.7 74 0.0016 21.2 2.0 20 11-34 4-23 (61)
117 TIGR02251 HIF-SF_euk Dullard-l 22.6 1.6E+02 0.0036 22.5 4.3 38 106-145 42-79 (162)
118 PF05496 RuvB_N: Holliday junc 22.6 74 0.0016 26.9 2.5 26 114-139 38-64 (233)
119 cd01855 YqeH YqeH. YqeH is an 22.2 70 0.0015 24.5 2.1 29 111-139 113-141 (190)
120 PF02190 LON: ATP-dependent pr 21.7 66 0.0014 24.4 1.9 36 96-131 12-47 (205)
121 PRK01236 S-adenosylmethionine 21.6 59 0.0013 24.9 1.6 11 124-134 77-87 (131)
122 PRK02770 S-adenosylmethionine 21.1 67 0.0015 24.9 1.8 19 124-142 89-108 (139)
123 PRK01706 S-adenosylmethionine 21.0 68 0.0015 24.3 1.8 11 124-134 78-88 (123)
124 KOG0733|consensus 20.9 47 0.001 32.5 1.1 20 125-144 545-564 (802)
125 KOG1158|consensus 20.4 61 0.0013 31.3 1.7 21 126-146 593-614 (645)
No 1
>KOG0039|consensus
Probab=99.89 E-value=1.2e-23 Score=194.71 Aligned_cols=117 Identities=32% Similarity=0.533 Sum_probs=102.9
Q ss_pred CcceeEEEEE---ecCCcccchhHhhcCccccccC--CcceeEEecccC-----------CCCCCcccCccccccCCccc
Q psy8389 40 NIRGKMVVFK---NHHGASGYTNESFCSLPEDFKM--GNIGVYCFSLTN-----------SPYPLSSQEKRDLITGLKTR 103 (156)
Q Consensus 40 ~~k~kkVyFi---R~~~~feWf~dll~eVe~~d~~--~~IhiylT~~~~-----------~~e~~~~~~~~d~iTgLrs~ 103 (156)
..+++++||+ |++++|+||.+++.+|++.+.. .++|+|+|+.-. .+...+...+.|+.+|+++.
T Consensus 507 ~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~ 586 (646)
T KOG0039|consen 507 SLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVE 586 (646)
T ss_pred cceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceee
Confidence 5799999999 9999999999999999998864 589999996422 12333556778999999999
Q ss_pred cccCCCChHHHHHHHHhcCC-CeeEEEEeCChhhHHHHHhhcccc------ceeEeccCC
Q psy8389 104 TNAGRPNWDRVFKHLLDQKK-GKVTVFYCGPPQLARILRLKCDQF------GFSFRKEVF 156 (156)
Q Consensus 104 ThfGRPnw~~if~~v~~~~~-~~VGVF~CGP~~L~~~l~~~c~~~------~F~fhkEnF 156 (156)
+|+|||||+++|++++..|+ .+||||+||||+|.+++++.|.++ .|.||+|+|
T Consensus 587 ~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 587 THFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred eeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 99999999999999999987 579999999999999999999997 399999998
No 2
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.74 E-value=2.2e-18 Score=130.29 Aligned_cols=106 Identities=21% Similarity=0.367 Sum_probs=65.1
Q ss_pred CcceeEEEEEecCCcccchhHhhcCccccccC--CcceeEEecccCCCCCCc-------------ccCccccccCCc-cc
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCSLPEDFKM--GNIGVYCFSLTNSPYPLS-------------SQEKRDLITGLK-TR 103 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~eVe~~d~~--~~IhiylT~~~~~~e~~~-------------~~~~~d~iTgLr-s~ 103 (156)
.-+++.||.+|+..+++||.++|+++++.+.. .++++|+|+.....+... .....|..+..+ ..
T Consensus 34 ~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~ 113 (156)
T PF08030_consen 34 TRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNIS 113 (156)
T ss_dssp --EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-------------------------------------
T ss_pred ccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccc
Confidence 46688899999999999999999988888754 467899996543321110 012234555554 56
Q ss_pred cccCCCChHHHHHHHHhcC-CCeeEEEEeCChhhHHHHHhhcc
Q psy8389 104 TNAGRPNWDRVFKHLLDQK-KGKVTVFYCGPPQLARILRLKCD 145 (156)
Q Consensus 104 ThfGRPnw~~if~~v~~~~-~~~VGVF~CGP~~L~~~l~~~c~ 145 (156)
.++|||||+.++.+..... ..+|+||+|||++|..+++++|.
T Consensus 114 ~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v~ 156 (156)
T PF08030_consen 114 VHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAVN 156 (156)
T ss_dssp EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH-
T ss_pred eecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHhC
Confidence 7899999999999995444 58999999999999999999884
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.08 E-value=1e-10 Score=110.46 Aligned_cols=54 Identities=26% Similarity=0.604 Sum_probs=49.3
Q ss_pred ccccC-CCChHHHHHHHHhcCC-CeeEEEEeCChhhHHHHHhhccccc--------------eeEeccCC
Q psy8389 103 RTNAG-RPNWDRVFKHLLDQKK-GKVTVFYCGPPQLARILRLKCDQFG--------------FSFRKEVF 156 (156)
Q Consensus 103 ~ThfG-RPnw~~if~~v~~~~~-~~VGVF~CGP~~L~~~l~~~c~~~~--------------F~fhkEnF 156 (156)
.+||| |||+++||+++.++.. ++|||.+|||++|.++|++.|+.+| |+||.-||
T Consensus 651 ~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f 720 (722)
T PLN02844 651 EIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNF 720 (722)
T ss_pred eeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeeccc
Confidence 57887 9999999999999875 8999999999999999999998874 88998887
No 4
>PLN02631 ferric-chelate reductase
Probab=98.82 E-value=3.8e-09 Score=99.60 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=44.4
Q ss_pred ccccC-CCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccccc---eeEeccCC
Q psy8389 103 RTNAG-RPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQFG---FSFRKEVF 156 (156)
Q Consensus 103 ~ThfG-RPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~---F~fhkEnF 156 (156)
.+||| |||+++||.+... .++|||++|||+.|..+|++.|+..+ |+||.-+|
T Consensus 642 ~~~~g~rp~~~~i~~~~~~--~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~f~s~sf 697 (699)
T PLN02631 642 SVHFGSKPNLKKILLEAEG--SEDVGVMVCGPRKMRHEVAKICSSGLAKNLHFEAISF 697 (699)
T ss_pred eeeecCCCCHHHHHHhccC--CCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecc
Confidence 47898 9999999983222 36999999999999999999999874 89988776
No 5
>PLN02292 ferric-chelate reductase
Probab=98.82 E-value=3.7e-09 Score=99.68 Aligned_cols=52 Identities=27% Similarity=0.495 Sum_probs=44.6
Q ss_pred cccccC-CCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccccc---eeEeccCC
Q psy8389 102 TRTNAG-RPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQFG---FSFRKEVF 156 (156)
Q Consensus 102 s~ThfG-RPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~---F~fhkEnF 156 (156)
+.+||| |||+++||.+.. .++|||++|||+.|..+|++.|+..+ |+||.-+|
T Consensus 645 ~~~~~g~rp~~~~i~~~~~---~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~~~s~sf 700 (702)
T PLN02292 645 TNIHYGERPNLNKLLVGLK---GSSVGVLVCGPKKMRQKVAKICSSGLAENLHFESISF 700 (702)
T ss_pred eeeeccCCCCHHHHHHhcC---CCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecc
Confidence 367887 999999994433 47999999999999999999999884 88988776
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=98.73 E-value=1.3e-08 Score=80.16 Aligned_cols=67 Identities=28% Similarity=0.455 Sum_probs=55.6
Q ss_pred CcceeEEEEEecCCcccchhHhhcC---ccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHH
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCS---LPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFK 116 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~e---Ve~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~ 116 (156)
.-+++.||..|+..++.||.+.|.+ ++.. .++++|+|+
T Consensus 138 ~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~---~~~~i~~T~------------------------------------ 178 (210)
T cd06186 138 TRRVKLVWVVRDREDLEWFLDELRAAQELEVD---GEIEIYVTR------------------------------------ 178 (210)
T ss_pred ccEEEEEEEECCHHHhHHHHHHHHhhhhccCC---ceEEEEEee------------------------------------
Confidence 3467777878999999999998864 5544 278999995
Q ss_pred HHHhcCCCeeEEEEeCChhhHHHHHhhcccc---ceeEeccCC
Q psy8389 117 HLLDQKKGKVTVFYCGPPQLARILRLKCDQF---GFSFRKEVF 156 (156)
Q Consensus 117 ~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~---~F~fhkEnF 156 (156)
||+|||++|.+.++..|.+. .+.||.|+|
T Consensus 179 -----------v~~CGp~~~~~~~~~~~~~~~~~~~~~~~e~f 210 (210)
T cd06186 179 -----------VVVCGPPGLVDDVRNAVAKKGGTGVEFHEESF 210 (210)
T ss_pred -----------EEEECchhhccHHHHHHhhcCCCceEEEeecC
Confidence 99999999999999999643 499999998
No 7
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=97.22 E-value=0.0011 Score=53.69 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=33.1
Q ss_pred ccCCCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 105 NAGRPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 105 hfGRPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
+.||++...+-+ . .......||.|||++|.+.+++......+ ..|.|.|
T Consensus 192 ~~g~~~~~~l~~-~--~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~f 243 (247)
T cd06184 192 HAGRIDLALLRE-L--LLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEVF 243 (247)
T ss_pred ccCccCHHHHhh-c--cCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence 347777544333 1 12346789999999999999999887753 3555554
No 8
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=97.01 E-value=0.002 Score=51.26 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=53.2
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|+..++. +.+.+.++.++...-.+++++|.... . ......||.+-. ++..+..
T Consensus 132 ~~v~l~~~~r~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~---------~-------~~~~~~g~~~~~-~l~~~~~ 193 (231)
T cd06215 132 ADIVFIHSARSPADII-FADELEELARRHPNFRLHLILEQPAP---------G-------AWGGYRGRLNAE-LLALLVP 193 (231)
T ss_pred CcEEEEEecCChhhhh-HHHHHHHHHHHCCCeEEEEEEccCCC---------C-------cccccCCcCCHH-HHHHhcC
Confidence 4566666668877765 34555566544111234444542110 0 001123676543 2333221
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
....-.||.|||++|.+.+++.+..+.+ ..|.|.|
T Consensus 194 -~~~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e~f 231 (231)
T cd06215 194 -DLKERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQESF 231 (231)
T ss_pred -CccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeeecC
Confidence 1133479999999999999999987653 3555665
No 9
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=96.97 E-value=0.0024 Score=51.62 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=51.9
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
-++..+|..|+..+. |+.+.+.++.++...-.++.++|.. ..-||.+-. .++++..
T Consensus 151 ~~i~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~s~~----------------------~~~g~~~~~-~l~~~~~ 206 (243)
T cd06216 151 ADVVLLYYARTREDV-IFADELRALAAQHPNLRLHLLYTRE----------------------ELDGRLSAA-HLDAVVP 206 (243)
T ss_pred CCEEEEEEcCChhhh-HHHHHHHHHHHhCCCeEEEEEEcCC----------------------ccCCCCCHH-HHHHhcc
Confidence 456666666777765 5666666665431111233344310 012555432 2333221
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhccccce--eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKCDQFGF--SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c~~~~F--~fhkEnF 156 (156)
. ...-.||.|||++|.+.+++......+ ..|.|.|
T Consensus 207 ~-~~~~~vyvcGp~~m~~~~~~~l~~~Gv~~~i~~e~F 243 (243)
T cd06216 207 D-LADRQVYACGPPGFLDAAEELLEAAGLADRLHTERF 243 (243)
T ss_pred C-cccCeEEEECCHHHHHHHHHHHHHCCCccceeeccC
Confidence 1 123589999999999999999887655 4555655
No 10
>PRK08051 fre FMN reductase; Validated
Probab=96.93 E-value=0.0019 Score=52.23 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
..+..+|..|+..+. |+.+.+.+++.. ..+++++.+- .... +..++ .-|+-. +.+++.+..
T Consensus 131 ~~v~l~~g~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~-~~~~---------~~~~~-----~~g~v~-~~l~~~~~~ 191 (232)
T PRK08051 131 RPITLYWGGREEDHL-YDLDELEALALK--HPNLHFVPVV-EQPE---------EGWQG-----KTGTVL-TAVMQDFGS 191 (232)
T ss_pred CcEEEEEEeccHHHh-hhhHHHHHHHHH--CCCcEEEEEe-CCCC---------CCccc-----ceeeeh-HHHHhhccC
Confidence 345555666888876 777777777654 2355554430 1000 00011 012221 222222211
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhc-cccce---eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKC-DQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c-~~~~F---~fhkEnF 156 (156)
...-.||+|||++|.+.+.+.+ .+..+ .+|.|.|
T Consensus 192 --~~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~f 229 (232)
T PRK08051 192 --LAEYDIYIAGRFEMAKIARELFCRERGAREEHLFGDAF 229 (232)
T ss_pred --cccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeecccc
Confidence 1223599999999999999999 77643 2455544
No 11
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=96.63 E-value=0.0053 Score=49.03 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=51.1
Q ss_pred CcceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHH
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLL 119 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~ 119 (156)
+.++..+|..|+..++.+ .+.+.++++. .++++++++-..... ...+.-++ +-||.. ..+.+..
T Consensus 127 ~~~v~l~~~~r~~~~~~~-~~el~~l~~~--~~~~~~~~~~s~~~~------~~~~~~~~-----~~g~v~--~~l~~~~ 190 (232)
T cd06190 127 DRPVDLFYGGRTPSDLCA-LDELSALVAL--GARLRVTPAVSDAGS------GSAAGWDG-----PTGFVH--EVVEATL 190 (232)
T ss_pred CCeEEEEEeecCHHHHhh-HHHHHHHHHh--CCCEEEEEEeCCCCC------CcCCCccC-----CcCcHH--HHHHhhc
Confidence 456677777788887754 5555666554 345554433101000 00000000 113322 2232222
Q ss_pred hcCCCeeEEEEeCChhhHHHHHhhccccc-e---eEeccCC
Q psy8389 120 DQKKGKVTVFYCGPPQLARILRLKCDQFG-F---SFRKEVF 156 (156)
Q Consensus 120 ~~~~~~VGVF~CGP~~L~~~l~~~c~~~~-F---~fhkEnF 156 (156)
......-.||.|||++|.+.+.+...... . ..|.|.|
T Consensus 191 ~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~f 231 (232)
T cd06190 191 GDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDRF 231 (232)
T ss_pred cCCccccEEEEECCHHHHHHHHHHHHHhCCCChHheeeccc
Confidence 21133457999999999999988775542 1 2455554
No 12
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=96.59 E-value=0.0075 Score=47.37 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 107 GRPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 107 GRPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
+|++..+++.++ ...-.||.|||+.|.+.+++.+....+ ..|.|.|
T Consensus 162 ~~~~~~~~~~~~----~~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e~F 210 (211)
T cd06185 162 GRLDLAALLAAP----PAGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFERF 210 (211)
T ss_pred CccCHHHHhccC----CCCCEEEEECCHHHHHHHHHHHHHcCCChhheEeeec
Confidence 677776666543 224579999999999999999987753 3555555
No 13
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=96.59 E-value=0.0068 Score=42.56 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCcceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHH-HH
Q psy8389 39 ANIRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVF-KH 117 (156)
Q Consensus 39 ~~~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if-~~ 117 (156)
..-++..+|..|+..++- +.+.+.++.+.... .++++.+ .. ...+. ..+-|| ....+ ++
T Consensus 23 ~~~~v~l~~~~r~~~~~~-~~~~l~~~~~~~~~-~~~~~~~--~~------~~~~~--------~~~~g~--v~~~~~~~ 82 (109)
T PF00175_consen 23 DNRKVTLFYGARTPEDLL-FRDELEALAQEYPN-RFHVVYV--SS------PDDGW--------DGFKGR--VTDLLLED 82 (109)
T ss_dssp CTSEEEEEEEESSGGGST-THHHHHHHHHHSTT-CEEEEEE--TT------TTSST--------TSEESS--HHHHHHHH
T ss_pred CCCCEEEEEEEccccccc-chhHHHHHHhhccc-ccccccc--cc------ccccc--------CCceee--hhHHHHHh
Confidence 455677777779999885 45556666544211 3444333 10 00000 001222 33333 33
Q ss_pred HHh--cCCCeeEEEEeCChhhHHHHHh
Q psy8389 118 LLD--QKKGKVTVFYCGPPQLARILRL 142 (156)
Q Consensus 118 v~~--~~~~~VGVF~CGP~~L~~~l~~ 142 (156)
+.. ......-||+|||++|.+.+++
T Consensus 83 ~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 83 LLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred hcccccCCCCCEEEEECCHHHHHHhcC
Confidence 332 2246778999999999999874
No 14
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=96.57 E-value=0.0075 Score=48.65 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.0
Q ss_pred eeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
.-.||+|||++|.+.+.++..+..+ ..|.|.|
T Consensus 204 ~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e~F 238 (238)
T cd06211 204 GHKAYLCGPPPMIDACIKTLMQGRLFERDIYYEKF 238 (238)
T ss_pred cCEEEEECCHHHHHHHHHHHHHcCCCHHHccccCC
Confidence 3469999999999999999887754 3566655
No 15
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=96.49 E-value=0.0069 Score=48.44 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=25.0
Q ss_pred eEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
-.||.|||++|.+.+++.+....+ ..|.|.|
T Consensus 198 ~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E~f 231 (231)
T cd06191 198 REAFICGPAGMMDAVETALKELGMPPERIHTERF 231 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCHHHeeeccC
Confidence 469999999999999999987653 3566665
No 16
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=96.29 E-value=0.011 Score=50.40 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=24.5
Q ss_pred eEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
-.||.|||++|.+.+.+......+ .+|.|.|
T Consensus 204 ~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F 237 (332)
T PRK10684 204 RTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKF 237 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHeEeecc
Confidence 359999999999999999877643 3566665
No 17
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=96.26 E-value=0.01 Score=47.36 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=25.5
Q ss_pred CeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
..-.||+|||++|.+.+.+...+..+ ..|.|.|
T Consensus 189 ~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e~f 224 (224)
T cd06189 189 SDFDVYACGSPEMVYAARDDFVEKGLPEENFFSDAF 224 (224)
T ss_pred cccEEEEECCHHHHHHHHHHHHHcCCCHHHcccCCC
Confidence 34569999999999999999987642 3555665
No 18
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=96.22 E-value=0.018 Score=46.08 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=25.6
Q ss_pred eeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
...||.|||++|.+.+.+.+.+..+ ..|.|.|
T Consensus 197 ~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~f 231 (232)
T cd06212 197 GCDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDKF 231 (232)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 4469999999999999999988754 4666655
No 19
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=96.19 E-value=0.014 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.3
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
...-||.|||+.|.+.+.+......
T Consensus 205 ~~~~v~icGp~~mv~~v~~~l~~~G 229 (241)
T cd06214 205 EFDEAFLCGPEPMMDAVEAALLELG 229 (241)
T ss_pred cCcEEEEECCHHHHHHHHHHHHHcC
Confidence 4567999999999999999987764
No 20
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=96.17 E-value=0.0043 Score=50.12 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=25.0
Q ss_pred EEEEeCChhhHHHHHhhccccceeEeccCC
Q psy8389 127 TVFYCGPPQLARILRLKCDQFGFSFRKEVF 156 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~F~fhkEnF 156 (156)
.||.|||++|.+.+.+.+... .+|.|.|
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~~--~~~~e~f 219 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEGK--KVHRESF 219 (220)
T ss_pred cEEEECcHHHHHHHHHHhhhc--eeEeccc
Confidence 589999999999999999886 7788877
No 21
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=95.96 E-value=0.021 Score=45.65 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=24.1
Q ss_pred eEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
-.||.|||++|.+.+++...+..+ ..|.|.|
T Consensus 202 ~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E~f 235 (236)
T cd06210 202 PDIYLCGPPGMVDAAFAAAREAGVPDEQVYLEKF 235 (236)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 358999999999999999987653 2555554
No 22
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=95.83 E-value=0.018 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.0
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
..-.||.|||++|.+.+++...+..
T Consensus 186 ~~~~vyicGp~~m~~~~~~~L~~~G 210 (222)
T cd06194 186 RDDVVYLCGAPSMVNAVRRRAFLAG 210 (222)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 3456999999999999999987764
No 23
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0043 Score=55.78 Aligned_cols=31 Identities=32% Similarity=0.645 Sum_probs=26.9
Q ss_pred eEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
=.||+|||++|.++|++.-++.++ .||.|.|
T Consensus 402 ~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~F 435 (438)
T COG4097 402 RSVFFCGPIKMMDSLRRDLKKQNVPITNFHYEHF 435 (438)
T ss_pred ceEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 379999999999999999999873 6788876
No 24
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.44 E-value=0.04 Score=47.14 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=48.3
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|++.++ ++.+-+.++.+. ...+++++.+-... .... ....||.+-..+-+-+..
T Consensus 138 ~~v~l~~~~r~~~d~-~~~~el~~l~~~-~~~~~~~~~~~s~~-------~~~~--------~~~~gr~~~~~l~~~l~~ 200 (352)
T TIGR02160 138 STFTLVYGNRRTASV-MFAEELADLKDK-HPQRFHLAHVLSRE-------PREA--------PLLSGRLDGERLAALLDS 200 (352)
T ss_pred ceEEEEEEeCCHHHH-HHHHHHHHHHHh-CcCcEEEEEEecCC-------CcCc--------ccccCccCHHHHHHHHHh
Confidence 456666666888876 445555555432 11234443320010 0000 012477764333232322
Q ss_pred cC--CCeeEEEEeCChhhHHHHHhhccccc
Q psy8389 121 QK--KGKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 121 ~~--~~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
.. ...-.||.|||++|.+.+++......
T Consensus 201 ~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G 230 (352)
T TIGR02160 201 LIDVDRADEWFLCGPQAMVDDAEQALTGLG 230 (352)
T ss_pred ccCcccCCEEEEECCHHHHHHHHHHHHHcC
Confidence 21 22346999999999999999987764
No 25
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=95.31 E-value=0.035 Score=43.98 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=48.1
Q ss_pred CcceeEEEEEecCCcccchhHhhcCccccccCCccee--EEecccCCCCCCcccCccccccCCccccccCCCChHHHHHH
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGV--YCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKH 117 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~Ihi--ylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~ 117 (156)
+.++..+|..|+..+. |+.+.+.++...- .+++++ ++|.-. . .+ ..+-||.+-. +...
T Consensus 133 ~~~i~l~~~~r~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~~~~---------~-~~-------~~~~g~~~~~-~l~~ 192 (234)
T cd06183 133 KTKISLLYANRTEEDI-LLREELDELAKKH-PDRFKVHYVLSRPP---------E-GW-------KGGVGFITKE-MIKE 192 (234)
T ss_pred CcEEEEEEecCCHHHh-hhHHHHHHHHHhC-cccEEEEEEEcCCC---------c-CC-------ccccceECHH-HHHH
Confidence 3455666666877765 6677666665430 133433 333100 0 00 1123555432 2222
Q ss_pred HHhc-CCCeeEEEEeCChhhHH-HHHhhccccc
Q psy8389 118 LLDQ-KKGKVTVFYCGPPQLAR-ILRLKCDQFG 148 (156)
Q Consensus 118 v~~~-~~~~VGVF~CGP~~L~~-~l~~~c~~~~ 148 (156)
.... ....-.||.|||++|.+ .+++++.+..
T Consensus 193 ~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 193 HLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred hCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 2211 22456799999999999 9999887653
No 26
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=95.17 E-value=0.06 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.609 Sum_probs=20.9
Q ss_pred eeEEEEeCChhhHHHHHhhccccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
...||.|||++|.+.+.+......
T Consensus 358 ~~~vyiCGp~~m~~~v~~~L~~~G 381 (399)
T PRK13289 358 DADFYFCGPVPFMQFVAKQLLELG 381 (399)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 567999999999999999887764
No 27
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=94.97 E-value=0.02 Score=46.18 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.0
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc---------eeEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG---------FSFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~---------F~fhkEnF 156 (156)
+.-.||.|||++|.+.+++.+.+.. -.+|.|.|
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVEKY 241 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEecC
Confidence 4457999999999999999997763 56777776
No 28
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=94.66 E-value=0.02 Score=45.29 Aligned_cols=33 Identities=33% Similarity=0.721 Sum_probs=25.6
Q ss_pred CeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
....||.|||++|.+.+++.+....+ ..|.|.|
T Consensus 180 ~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~f 215 (216)
T cd06198 180 ADADVWFCGPPGMADALEKGLRALGVPARRFHYERF 215 (216)
T ss_pred CCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhhc
Confidence 45679999999999999999987643 3455554
No 29
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=94.56 E-value=0.024 Score=45.09 Aligned_cols=32 Identities=28% Similarity=0.567 Sum_probs=25.0
Q ss_pred eeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
.-.||.|||++|.+.+.+.+.+..+ ..|.|.|
T Consensus 201 ~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E~f 235 (235)
T cd06217 201 GRRVYVCGPPAFVEAATRLLLELGVPRDRIRTEAF 235 (235)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHEeeccC
Confidence 3469999999999999999988753 2455655
No 30
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=94.33 E-value=0.054 Score=45.07 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=25.9
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc---eeEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG---FSFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~---F~fhkEnF 156 (156)
.+..||.|||++|.+.+.+.+.... =..|.|.|
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~F 283 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDDF 283 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccCC
Confidence 4577999999999999999987764 23566655
No 31
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=93.99 E-value=0.12 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.1
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||.|||++|.+.+++.....
T Consensus 211 ~~~~vyiCGP~~m~~~v~~~L~~~ 234 (289)
T PRK08345 211 KNTYAAICGPPVMYKFVFKELINR 234 (289)
T ss_pred cccEEEEECCHHHHHHHHHHHHHc
Confidence 345699999999999999988665
No 32
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=93.97 E-value=0.037 Score=44.15 Aligned_cols=33 Identities=39% Similarity=0.784 Sum_probs=26.4
Q ss_pred CeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
.+..||.|||++|.+.+++++.+..+ ..|.|.|
T Consensus 192 ~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~F 227 (228)
T cd06209 192 GDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEKF 227 (228)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeecc
Confidence 45679999999999999999987753 4666665
No 33
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=93.72 E-value=0.13 Score=42.27 Aligned_cols=25 Identities=24% Similarity=0.600 Sum_probs=20.8
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
..-.||+|||++|.+.+.++.....
T Consensus 189 ~~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 189 DNTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC
Confidence 3457999999999999999887653
No 34
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=93.67 E-value=0.054 Score=43.23 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=25.3
Q ss_pred eeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
.-.||.|||++|.+.+++.+....+ ..|.|.|
T Consensus 193 ~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e~f 227 (227)
T cd06213 193 ATEAYLCGPPAMIDAAIAVLRALGIAREHIHADRF 227 (227)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHEeccCC
Confidence 4469999999999999999987754 3566665
No 35
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=92.85 E-value=0.079 Score=41.84 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.7
Q ss_pred eeEEEEeCChhhHHHHHhhccccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
.-.||+|||++|.+.+++......
T Consensus 190 ~~~v~vcGp~~~~~~v~~~l~~~G 213 (224)
T cd06187 190 DHDIYICGPPAMVDATVDALLARG 213 (224)
T ss_pred cCEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999987764
No 36
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=92.84 E-value=0.065 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.647 Sum_probs=20.1
Q ss_pred eEEEEeCChhhHHHHHhhccccc
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
..||.||||+|.+.+.+.+....
T Consensus 302 ~~vy~CGp~~mv~~~~~~L~~~G 324 (340)
T PRK11872 302 FDMYLCGPPPMVEAVKQWLDEQA 324 (340)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcC
Confidence 45999999999999999997763
No 37
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=92.48 E-value=0.12 Score=41.75 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=24.1
Q ss_pred EEEEeCChhhHHHHHhhccccc--eeEeccCC
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG--FSFRKEVF 156 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~--F~fhkEnF 156 (156)
.||.|||++|.+.+.+...... -.+|.|.|
T Consensus 169 ~vyicGp~~m~~~~~~~L~~~g~~~~i~~e~f 200 (233)
T cd06220 169 AIYVCGPEIMMYKVLEILDERGVRAQFSLERY 200 (233)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 6999999999999999987764 35666654
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.99 E-value=0.15 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.3
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc--eeEeccC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG--FSFRKEV 155 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~--F~fhkEn 155 (156)
..-.||.|||++|.+.+++.+.... ..++.|+
T Consensus 179 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~~~~~ 212 (246)
T cd06218 179 RPDVVYACGPEPMLKAVAELAAERGVPCQVSLEE 212 (246)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 3568999999999999999998764 4555554
No 39
>PRK05713 hypothetical protein; Provisional
Probab=91.45 E-value=0.12 Score=43.91 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEEeCChhhHHHHHhhccccc
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
--||.|||++|.+.+.+.+....
T Consensus 275 ~~vyiCGp~~mv~~~~~~L~~~G 297 (312)
T PRK05713 275 TMALLCGSPASVERFARRLYLAG 297 (312)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcC
Confidence 45999999999999999987653
No 40
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=90.71 E-value=0.16 Score=44.79 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=24.8
Q ss_pred CeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
....||.|||++|.+.+.+.+....+ ..|.|.|
T Consensus 372 ~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 407 (409)
T PRK05464 372 EDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDF 407 (409)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEccc
Confidence 45679999999999999999877642 2455544
No 41
>KOG0534|consensus
Probab=90.68 E-value=0.87 Score=39.39 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=45.7
Q ss_pred CcceeEEEEEecCCcccchhHhhcCcccccc-CCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHH
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCSLPEDFK-MGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHL 118 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~eVe~~d~-~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v 118 (156)
..++..+||=++..+. |+.+.|.++..++. +-.++-++..-. +.. ++ .-|+++-+.|=+.+
T Consensus 185 ~tki~lly~N~te~DI-Llr~eL~~la~~~p~rf~~~y~v~~~~-------~~w-----~~-----~~g~It~~~i~~~l 246 (286)
T KOG0534|consen 185 TTKISLLYANKTEDDI-LLREELEELASKYPERFKVWYVVDQPP-------EIW-----DG-----SVGFITKDLIKEHL 246 (286)
T ss_pred CcEEEEEEecCCcccc-chHHHHHHHHhhCcceEEEEEEEcCCc-------ccc-----cC-----ccCccCHHHHHhhC
Confidence 4566667777888887 44555666655543 223333332111 000 00 13566655444444
Q ss_pred HhcCCCeeEEEEeCChhhHHH
Q psy8389 119 LDQKKGKVTVFYCGPPQLARI 139 (156)
Q Consensus 119 ~~~~~~~VGVF~CGP~~L~~~ 139 (156)
....+..+-|+.||||+|...
T Consensus 247 ~~~~~~~~~~liCGPp~m~~~ 267 (286)
T KOG0534|consen 247 PPPKEGETLVLICGPPPMING 267 (286)
T ss_pred CCCCCCCeEEEEECCHHHHhH
Confidence 433344788999999999974
No 42
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=90.54 E-value=0.17 Score=39.42 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=20.1
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||+|||++|.+.+++.....
T Consensus 190 ~~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 190 SGALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999887654
No 43
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=90.38 E-value=0.18 Score=41.43 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.6
Q ss_pred eeEEEEeCChhhHHHHHhhcccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.-.||.|||++|.+.+.+.+...
T Consensus 206 ~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 206 TSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred CCEEEEECCHHHHHHHHHHHHHh
Confidence 45599999999999999988653
No 44
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.16 E-value=0.2 Score=44.22 Aligned_cols=33 Identities=18% Similarity=0.497 Sum_probs=24.8
Q ss_pred CeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
..-.||.|||++|.+.+.+.+....+ ..|.|.|
T Consensus 368 ~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 403 (405)
T TIGR01941 368 EDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDDF 403 (405)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 34569999999999999999877643 3455544
No 45
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=90.14 E-value=0.2 Score=42.01 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.+.+.+.+..
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 183 RVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred EEEEECCHHHHHHHHHHHHhcC
Confidence 4999999999999999887653
No 46
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=90.03 E-value=0.18 Score=42.92 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.6
Q ss_pred eeEEEEeCChhhHHHHHhhccccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
.-.||.|||++|.+.+.+......
T Consensus 298 ~~~vy~CGp~~m~~~~~~~l~~~G 321 (339)
T PRK07609 298 GHQVYACGSPVMVYAARDDFVAAG 321 (339)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999887764
No 47
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=89.79 E-value=0.22 Score=39.33 Aligned_cols=22 Identities=18% Similarity=0.588 Sum_probs=19.0
Q ss_pred eEEEEeCChhhHHHHHhhcccc
Q psy8389 126 VTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
-.||.|||++|.+.+.+.+...
T Consensus 187 ~~vyiCGp~~m~~~~~~~l~~~ 208 (218)
T cd06196 187 QHFYVCGPPPMEEAINGALKEL 208 (218)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 4599999999999999888665
No 48
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=89.29 E-value=0.21 Score=41.84 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.1
Q ss_pred CeeEEEEeCChhhHHHHHhhccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
..-.||.|||++|.+.|++++..
T Consensus 238 ~~~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 238 DNTHVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH
Confidence 34459999999999999888765
No 49
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=89.15 E-value=0.24 Score=40.06 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.1
Q ss_pred CeeEEEEeCChhhHHHHHhhccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
...-||+|||++|.+.+++++..
T Consensus 197 ~~~~vyicGp~~mv~~v~~~l~~ 219 (235)
T cd06193 197 GDGYVWIAGEAGAVRALRRHLRE 219 (235)
T ss_pred CCeEEEEEccHHHHHHHHHHHHH
Confidence 45679999999999999999865
No 50
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=89.08 E-value=0.24 Score=42.05 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=18.1
Q ss_pred eeEEEEeCChhhHHHHHhhcccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.--||.|||++|.+.+.+++.+.
T Consensus 259 ~~~vYiCGp~~mv~~v~~~L~~~ 281 (307)
T PLN03116 259 GAHIYFCGLKGMMPGIQDTLKRV 281 (307)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHH
Confidence 34599999999999887776553
No 51
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=88.35 E-value=0.3 Score=41.18 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.8
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.--||.|||++|.+.+.+.+.+
T Consensus 245 ~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 245 GAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred CcEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999988877654
No 52
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=88.26 E-value=0.33 Score=39.24 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.3
Q ss_pred eEEEEeCChhhHHHHHhhcccc
Q psy8389 126 VTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.-||.|||++|.+.+++..+.+
T Consensus 179 ~~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 179 DRIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred CEEEEECCHHHHHHHHHHHHhh
Confidence 4699999999999999988765
No 53
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=88.13 E-value=0.27 Score=40.23 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=17.4
Q ss_pred eEEEEeCCh-hhHHHHHhhccc
Q psy8389 126 VTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
--||.|||+ +|.+.+.+...+
T Consensus 203 ~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 203 AAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred cEEEEECCchhhhHHHHHHHHH
Confidence 359999999 999999887654
No 54
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=87.35 E-value=0.3 Score=40.71 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=17.3
Q ss_pred EEEEeCChh-hHHHHHhhcccc
Q psy8389 127 TVFYCGPPQ-LARILRLKCDQF 147 (156)
Q Consensus 127 GVF~CGP~~-L~~~l~~~c~~~ 147 (156)
.||+|||++ |.+.+.+.+.+.
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred EEEEECCcccchHHHHHHHHHH
Confidence 799999999 988887776554
No 55
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=85.60 E-value=0.55 Score=38.36 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEEeCChhhHHHHHhhcccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~ 147 (156)
-||.|||++|.+.+.+...+.
T Consensus 182 ~vyiCGP~~m~~~~~~~l~~~ 202 (248)
T cd06219 182 LVIAIGPPIMMKAVSELTRPY 202 (248)
T ss_pred EEEEECCHHHHHHHHHHHHHc
Confidence 499999999999999887654
No 56
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=85.50 E-value=0.45 Score=41.67 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.1
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.--||+|||++|.+.|++...+
T Consensus 328 ~~~vyiCGp~~M~~~v~~~L~~ 349 (384)
T cd06206 328 GARVYVCGDGRMAPGVREVLKR 349 (384)
T ss_pred CcEEEEECCCchHHHHHHHHHH
Confidence 3459999999999999887654
No 57
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=85.10 E-value=0.58 Score=38.19 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.++++..+..
T Consensus 183 ~vyvCGp~~m~~~v~~~l~~~G 204 (250)
T PRK00054 183 AIYSCGPEIMMKKVVEILKEKK 204 (250)
T ss_pred EEEEeCCHHHHHHHHHHHHHcC
Confidence 5999999999999999887653
No 58
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=85.08 E-value=0.69 Score=39.12 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=24.9
Q ss_pred eEEEEeCChhhHHHHHhhccccc---eeEeccCC
Q psy8389 126 VTVFYCGPPQLARILRLKCDQFG---FSFRKEVF 156 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c~~~~---F~fhkEnF 156 (156)
=.+|.|||.+|-+.++..+.+.. =.+|.|.|
T Consensus 197 r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F 230 (266)
T COG1018 197 REVYLCGPGPFMQAVRLALEALGVPDDRVHLEGF 230 (266)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCChhcEEEeec
Confidence 56999999999999999986664 24666665
No 59
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=84.30 E-value=0.69 Score=38.38 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=20.2
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
+.--||.||||+|.+.+.+.....
T Consensus 191 ~~~~v~~cGp~~M~~~v~~~~~~~ 214 (252)
T COG0543 191 EVDDVYICGPPAMVKAVREKLKEY 214 (252)
T ss_pred cCCEEEEECCHHHHHHHHHHHHhc
Confidence 346699999999999999887665
No 60
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=83.03 E-value=1.5 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.7
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||.||||+|.+.+.+.....
T Consensus 191 ~~~~vylCGp~~mv~~~~~~L~~~ 214 (263)
T PRK08221 191 DNMQVIVVGPPIMMKFTVLEFLKR 214 (263)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc
Confidence 455699999999999988877654
No 61
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=82.72 E-value=0.91 Score=40.25 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=17.4
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.--||+|||++|.+.|.++...
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 4569999999998888776544
No 62
>PLN02292 ferric-chelate reductase
Probab=82.18 E-value=1.9 Score=41.59 Aligned_cols=41 Identities=5% Similarity=-0.097 Sum_probs=29.1
Q ss_pred cceeEEEEEecCCcccchhHhhcCccc-----cccCCcceeEEecc
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPE-----DFKMGNIGVYCFSL 81 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~-----~d~~~~IhiylT~~ 81 (156)
-+++.||.+|+..+..|..++..+++. +....++++|+|..
T Consensus 465 ~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~ 510 (702)
T PLN02292 465 PKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTRE 510 (702)
T ss_pred CcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCC
Confidence 467888888999988887666655531 22356788999954
No 63
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=82.13 E-value=0.84 Score=39.62 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=15.3
Q ss_pred eEEEEeCChhhHHHHHhh
Q psy8389 126 VTVFYCGPPQLARILRLK 143 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~ 143 (156)
-.||.|||++|.+.+...
T Consensus 264 ~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 264 KIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred cEEEEeCCHHHHHHhcCC
Confidence 459999999999998655
No 64
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=81.97 E-value=0.95 Score=37.51 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||.|||++|.+.+++...+.
T Consensus 189 ~~~~v~lCGp~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 189 EEVQAIVVGPPIMMKFTVQELLKK 212 (261)
T ss_pred cceEEEEECCHHHHHHHHHHHHHc
Confidence 345699999999999999887665
No 65
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=81.75 E-value=0.86 Score=40.65 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=13.8
Q ss_pred eEEEEeCChhhHHHHHhhc
Q psy8389 126 VTVFYCGPPQLARILRLKC 144 (156)
Q Consensus 126 VGVF~CGP~~L~~~l~~~c 144 (156)
--||.|||++|.+.+.+..
T Consensus 364 ~~vYiCGp~~M~~~v~~~L 382 (411)
T TIGR03224 364 TYIYICGLKGMEEGVLDAF 382 (411)
T ss_pred cEEEEECCHHHHHHHHHHH
Confidence 4599999999955554444
No 66
>PRK05802 hypothetical protein; Provisional
Probab=80.89 E-value=1.1 Score=38.59 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=17.7
Q ss_pred EEEeCChhhHHHHHhhccc
Q psy8389 128 VFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 128 VF~CGP~~L~~~l~~~c~~ 146 (156)
||.|||++|.+.|.+...+
T Consensus 257 vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 257 IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred EEEECCHHHHHHHHHHHhh
Confidence 9999999999999998876
No 67
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=80.32 E-value=0.78 Score=40.15 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=17.9
Q ss_pred eEEEEeCChh-hHHHHHhhcccc
Q psy8389 126 VTVFYCGPPQ-LARILRLKCDQF 147 (156)
Q Consensus 126 VGVF~CGP~~-L~~~l~~~c~~~ 147 (156)
.-||+|||+. |.+.|++...+.
T Consensus 330 ~~vYvCG~~~~M~~~V~~~L~~~ 352 (382)
T cd06207 330 GVIYVCGSTWKMPPDVQEAFEEI 352 (382)
T ss_pred CEEEEECCcccccHHHHHHHHHH
Confidence 3599999998 999998876543
No 68
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=79.03 E-value=1.5 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.742 Sum_probs=15.9
Q ss_pred eeEEEEeCChhhHH-HHHhhccc
Q psy8389 125 KVTVFYCGPPQLAR-ILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~-~l~~~c~~ 146 (156)
+-.||.|||++|.+ .+.+.-..
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 45799999999987 45544433
No 69
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=78.61 E-value=0.96 Score=39.37 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=16.7
Q ss_pred eEEEEeCCh-hhHHHHHhhccc
Q psy8389 126 VTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
--||+|||+ .|.+.|+++...
T Consensus 308 ~~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 308 AHFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred CEEEEECCCccccHHHHHHHHH
Confidence 349999999 899888877543
No 70
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=78.56 E-value=1.3 Score=39.22 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=17.3
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.--||+|||+.|.+.|++....
T Consensus 350 ~~~iYvCG~~~M~~~V~~~L~~ 371 (406)
T cd06202 350 GGHIYVCGDVTMAEDVSQTIQR 371 (406)
T ss_pred CCEEEEeCCCchHHHHHHHHHH
Confidence 3459999999999888876543
No 71
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=76.81 E-value=1.3 Score=39.46 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=16.7
Q ss_pred eEEEEeCChh-hHHHHHhhccc
Q psy8389 126 VTVFYCGPPQ-LARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~~-L~~~l~~~c~~ 146 (156)
--||+|||+. |.+.|++....
T Consensus 364 ~~vYvCGp~~~M~~~V~~~L~~ 385 (416)
T cd06204 364 AYIYVCGDAKNMARDVEKTLLE 385 (416)
T ss_pred CEEEEECCcccchHHHHHHHHH
Confidence 4599999998 98888776544
No 72
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=75.30 E-value=1.9 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.+.+.+....
T Consensus 849 ~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 849 EVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 4999999999999999887653
No 73
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=75.16 E-value=1.9 Score=41.01 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.0
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.+.+.+....
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 183 KVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 4899999999999999887653
No 74
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=72.32 E-value=1.9 Score=32.04 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=13.0
Q ss_pred cCCCChHHHHHHHHh
Q psy8389 106 AGRPNWDRVFKHLLD 120 (156)
Q Consensus 106 fGRPnw~~if~~v~~ 120 (156)
||||||+..+.++..
T Consensus 1 f~rpdWR~mLa~MSs 15 (100)
T TIGR01715 1 FGRPDWRAMLAGMSS 15 (100)
T ss_pred CCCchHHHHHHhccH
Confidence 799999999987764
No 75
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=71.83 E-value=1.9 Score=32.27 Aligned_cols=16 Identities=31% Similarity=0.897 Sum_probs=13.8
Q ss_pred ccCCCChHHHHHHHHh
Q psy8389 105 NAGRPNWDRVFKHLLD 120 (156)
Q Consensus 105 hfGRPnw~~if~~v~~ 120 (156)
-||||||+..+.++..
T Consensus 5 Ef~R~dWR~MLa~MSs 20 (103)
T PF06223_consen 5 EFGRPDWRRMLAEMSS 20 (103)
T ss_pred HhcCchHHHHHHhcCH
Confidence 5899999999987764
No 76
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=70.82 E-value=2.6 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.3
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||.|||++|.+.+.+.....
T Consensus 1128 ~~~~vyiCGP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1128 KDLLVAICGPPVMQRAVKADLLAL 1151 (1167)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc
Confidence 355699999999999999887664
No 77
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=69.48 E-value=2.8 Score=37.06 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.0
Q ss_pred eeEEEEeCC-hhhHHHHHhhccc
Q psy8389 125 KVTVFYCGP-PQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP-~~L~~~l~~~c~~ 146 (156)
.--||+||| +.|.+.|+++..+
T Consensus 345 ~~~iYvCG~~~~M~~~V~~~l~~ 367 (398)
T cd06203 345 NAKIYVCGDAKGMAKDVRDTFVD 367 (398)
T ss_pred CcEEEEECCcchhhHHHHHHHHH
Confidence 344999999 5899998887653
No 78
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=68.34 E-value=2.4 Score=39.70 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=16.8
Q ss_pred EEEEeC-ChhhHHHHHhhccc
Q psy8389 127 TVFYCG-PPQLARILRLKCDQ 146 (156)
Q Consensus 127 GVF~CG-P~~L~~~l~~~c~~ 146 (156)
-||+|| |+.|.+.|++....
T Consensus 546 ~vYvCG~~~~M~~~V~~~L~~ 566 (597)
T TIGR01931 546 HIYVCGDAKKMAKDVHQALLD 566 (597)
T ss_pred EEEEECCCccccHHHHHHHHH
Confidence 499999 89999998887654
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=60.60 E-value=5.6 Score=39.62 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.+.+..+.+.
T Consensus 183 ~vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 183 LVVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred EEEEECCHHHHHHHHHHHHHCC
Confidence 3999999999999999887653
No 80
>PLN02252 nitrate reductase [NADPH]
Probab=60.37 E-value=10 Score=37.57 Aligned_cols=24 Identities=17% Similarity=0.573 Sum_probs=17.7
Q ss_pred CeeEEEEeCChhhHHH-HHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARI-LRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~-l~~~c~~~ 147 (156)
..--||.|||++|.+. +...+..+
T Consensus 854 ~~~~vyiCGPp~Mi~~av~~~L~~~ 878 (888)
T PLN02252 854 DETLALMCGPPPMIEFACQPNLEKM 878 (888)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 3456999999999984 66666554
No 81
>PRK06214 sulfite reductase; Provisional
Probab=54.10 E-value=9.3 Score=35.62 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=15.4
Q ss_pred eEEEEeCCh-hhHHHHHhhccc
Q psy8389 126 VTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
--||+|||. .|.+.|++....
T Consensus 478 a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 478 AHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred cEEEEeCChHHHHHHHHHHHHH
Confidence 359999996 588888775533
No 82
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=51.64 E-value=9.1 Score=35.44 Aligned_cols=12 Identities=42% Similarity=1.132 Sum_probs=10.5
Q ss_pred CCCeeEEEEeCC
Q psy8389 122 KKGKVTVFYCGP 133 (156)
Q Consensus 122 ~~~~VGVF~CGP 133 (156)
.+.+|++|+|||
T Consensus 20 ~~~~v~mYvCGp 31 (490)
T PRK14536 20 EHGHVRLYGCGP 31 (490)
T ss_pred CCCceEEEeeCC
Confidence 356899999999
No 83
>PLN02946 cysteine-tRNA ligase
Probab=46.93 E-value=12 Score=35.26 Aligned_cols=11 Identities=45% Similarity=1.066 Sum_probs=10.0
Q ss_pred CCeeEEEEeCC
Q psy8389 123 KGKVTVFYCGP 133 (156)
Q Consensus 123 ~~~VGVF~CGP 133 (156)
+.+|++|+|||
T Consensus 78 ~~~v~~Y~CGp 88 (557)
T PLN02946 78 EGKVGMYVCGV 88 (557)
T ss_pred CCceeEEEeCC
Confidence 47899999999
No 84
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=43.67 E-value=14 Score=34.76 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=15.6
Q ss_pred EEEEeCCh-hhHHHHHhhccc
Q psy8389 127 TVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 127 GVF~CGP~-~L~~~l~~~c~~ 146 (156)
-||+|||. .|++.|+++...
T Consensus 549 ~~YVCG~~~~M~~~V~~~L~~ 569 (600)
T PRK10953 549 HIYVCGDANRMAKDVEQALLE 569 (600)
T ss_pred EEEEECCCccchHHHHHHHHH
Confidence 49999996 699888876543
No 85
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.28 E-value=15 Score=34.01 Aligned_cols=12 Identities=50% Similarity=1.234 Sum_probs=10.4
Q ss_pred CCCeeEEEEeCC
Q psy8389 122 KKGKVTVFYCGP 133 (156)
Q Consensus 122 ~~~~VGVF~CGP 133 (156)
.+.+|.+|+|||
T Consensus 19 ~~~~V~mYvCGp 30 (464)
T COG0215 19 DPGKVKMYVCGP 30 (464)
T ss_pred CCCeEEEEecCC
Confidence 456799999999
No 86
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=40.67 E-value=15 Score=34.03 Aligned_cols=10 Identities=50% Similarity=1.212 Sum_probs=9.2
Q ss_pred CeeEEEEeCC
Q psy8389 124 GKVTVFYCGP 133 (156)
Q Consensus 124 ~~VGVF~CGP 133 (156)
.+|++|+|||
T Consensus 20 ~~v~mY~CGp 29 (481)
T PRK14534 20 SDVKVYACGP 29 (481)
T ss_pred CceEEEeCCC
Confidence 4899999999
No 87
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=37.21 E-value=20 Score=34.84 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.9
Q ss_pred CCeeEEEEeCC
Q psy8389 123 KGKVTVFYCGP 133 (156)
Q Consensus 123 ~~~VGVF~CGP 133 (156)
+++|++|+|||
T Consensus 246 ~~~V~mYvCGP 256 (699)
T PRK14535 246 PENVRMYVCGM 256 (699)
T ss_pred CCceEEEecCC
Confidence 36899999999
No 88
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=36.90 E-value=36 Score=30.43 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=21.4
Q ss_pred CCeeEEEEeCChhhHHHHHhhcccc
Q psy8389 123 KGKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 123 ~~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
|+.---|.||||-|..+|-++.+.+
T Consensus 372 PEDceyYmCGPp~mNasvikmL~dl 396 (410)
T COG2871 372 PEDCEYYMCGPPLMNASVIKMLKDL 396 (410)
T ss_pred chheeEEeeCcchhhHHHHHHHHhc
Confidence 4788899999999999998877665
No 89
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=35.77 E-value=45 Score=26.15 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=23.5
Q ss_pred cccccCCccccccCCCChH--HHHHHHHhc-CCCeeEEEEeCC
Q psy8389 94 RDLITGLKTRTNAGRPNWD--RVFKHLLDQ-KKGKVTVFYCGP 133 (156)
Q Consensus 94 ~d~iTgLrs~ThfGRPnw~--~if~~v~~~-~~~~VGVF~CGP 133 (156)
.|.+ -+-+.||+|+|.-. .+++..... ...+|++|.||.
T Consensus 47 yD~v-IlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~l 88 (177)
T PRK11104 47 YDRV-VIGASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVNL 88 (177)
T ss_pred CCEE-EEECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEech
Confidence 4443 24457788887632 444443322 247999999994
No 90
>PRK06703 flavodoxin; Provisional
Probab=35.57 E-value=69 Score=23.82 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=24.7
Q ss_pred Cccccc-cCCC--ChHHHHHHHHhcC--CCeeEEEEeCChh
Q psy8389 100 LKTRTN-AGRP--NWDRVFKHLLDQK--KGKVTVFYCGPPQ 135 (156)
Q Consensus 100 Lrs~Th-fGRP--nw~~if~~v~~~~--~~~VGVF~CGP~~ 135 (156)
+-+.|+ .|+| ++..+++.+.... ..+|+||-||...
T Consensus 54 igspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~ 94 (151)
T PRK06703 54 LGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA 94 (151)
T ss_pred EEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC
Confidence 334666 5766 4888888887543 3689999988643
No 91
>PHA03302 envelope glycoprotein L; Provisional
Probab=33.69 E-value=31 Score=29.55 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=33.9
Q ss_pred cccccCCccccccCCCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccccc
Q psy8389 94 RDLITGLKTRTNAGRPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 94 ~d~iTgLrs~ThfGRPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
+-++|-+++ =++|||-+++....++.+ +.+||-| |++.|++++
T Consensus 107 RtLLTLlrS---d~ap~Wm~fl~GY~~C~~-~~~IyTC--------V~dvCr~yd 149 (253)
T PHA03302 107 RTLLTLLRS---DSAPDWMKFLNGYSQCGD-SSTIYTC--------VDDVCRQYD 149 (253)
T ss_pred HHHHHHHcc---cCcccHHHHhcChhhcCC-CCceEEe--------hhhhhhhcC
Confidence 444566653 369999999999999877 8889998 788898873
No 92
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=33.55 E-value=22 Score=34.47 Aligned_cols=41 Identities=10% Similarity=-0.047 Sum_probs=30.3
Q ss_pred cceeEEEEEecCCcccchhHhhcCcccc---ccCCcceeEEecc
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPED---FKMGNIGVYCFSL 81 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~---d~~~~IhiylT~~ 81 (156)
-++..||.+|+..+..|+.++..++.++ ....++++|+|+.
T Consensus 457 ~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE 500 (722)
T PLN02844 457 KRVQLIYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQE 500 (722)
T ss_pred CcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCC
Confidence 3577888889999999999887555432 1246788999943
No 93
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=32.89 E-value=80 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhccc
Q psy8389 107 GRPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 107 GRPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
-||.++.+++.+++. -.|.||..|.+.-+..+-+....
T Consensus 37 ~RP~l~~FL~~l~~~--~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 37 LRPGLDEFLEELSKH--YEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp E-TTHHHHHHHHHHH--CEEEEE-SS-HHHHHHHHHHHTT
T ss_pred eCchHHHHHHHHHHh--ceEEEEEeehhhhhhHHHHhhhh
Confidence 599999999999754 58999999998888877766654
No 94
>PF14980 TIP39: TIP39 peptide
Probab=32.52 E-value=46 Score=21.76 Aligned_cols=17 Identities=41% Similarity=0.765 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHhhh
Q psy8389 2 DNKVKKRQRLLATLERK 18 (156)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (156)
|.....|.|||+.|||.
T Consensus 20 DaAFrerarLl~amER~ 36 (51)
T PF14980_consen 20 DAAFRERARLLTAMERQ 36 (51)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34457789999999985
No 95
>PF11892 DUF3412: Domain of unknown function (DUF3412); InterPro: IPR021826 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with PF03641 from PFAM. ; PDB: 3BQ9_A 2PMB_D 3GH1_D.
Probab=32.31 E-value=17 Score=27.97 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhccceecCcc
Q psy8389 8 RQRLLATLERKFSGKVLGGGK 28 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (156)
...|.|.|.|-|||-|-|-=|
T Consensus 50 ~~~LAanLRrAFSGIVAGNVK 70 (123)
T PF11892_consen 50 PHELAANLRRAFSGIVAGNVK 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccccccccC
Confidence 357899999999999988544
No 96
>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.
Probab=32.04 E-value=27 Score=28.71 Aligned_cols=15 Identities=60% Similarity=0.939 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhhccc
Q psy8389 8 RQRLLATLERKFSGK 22 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (156)
-+||...||.||||+
T Consensus 72 q~rLv~ELEKKfsgk 86 (189)
T PF01251_consen 72 QVRLVRELEKKFSGK 86 (189)
T ss_dssp CHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHhhcCCC
Confidence 468999999999996
No 97
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=31.55 E-value=28 Score=33.05 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=16.4
Q ss_pred EEEEeC-ChhhHHHHHhhccc
Q psy8389 127 TVFYCG-PPQLARILRLKCDQ 146 (156)
Q Consensus 127 GVF~CG-P~~L~~~l~~~c~~ 146 (156)
-+|+|| +..|++.|+++-..
T Consensus 536 ~~YVCGd~~~Ma~dV~~AL~~ 556 (587)
T COG0369 536 HIYVCGDAKGMAKDVEEALLD 556 (587)
T ss_pred EEEEeCCCccchHHHHHHHHH
Confidence 489999 99999998877543
No 98
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=31.53 E-value=42 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=11.7
Q ss_pred CeeEEEEeCChhhHHHH
Q psy8389 124 GKVTVFYCGPPQLARIL 140 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l 140 (156)
..|+||.||+-...+.+
T Consensus 70 ~avDiftC~~~~p~~a~ 86 (106)
T PF02675_consen 70 AAVDIFTCGEFDPEKAI 86 (106)
T ss_dssp EEEEEEEESTHHHHHHH
T ss_pred EEEEEEEcCCCCHHHHH
Confidence 47999999993333333
No 99
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=30.63 E-value=58 Score=24.23 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=26.9
Q ss_pred ccccccCCccccccCCCCh--HHHHHHHHhc-CCCeeEEEEeCC
Q psy8389 93 KRDLITGLKTRTNAGRPNW--DRVFKHLLDQ-KKGKVTVFYCGP 133 (156)
Q Consensus 93 ~~d~iTgLrs~ThfGRPnw--~~if~~v~~~-~~~~VGVF~CGP 133 (156)
..|.+ .+-+.+|.|++.. .++.+..... ...+|.+|.||-
T Consensus 43 ~yD~v-i~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 43 DYDAV-IFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred cCCEE-EEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 34443 3556889999877 6777766543 347899988763
No 100
>PRK09267 flavodoxin FldA; Validated
Probab=30.08 E-value=71 Score=24.23 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcccccc-CCC--ChHHHHHHHHhcC--CCeeEEEEeC
Q psy8389 99 GLKTRTNA-GRP--NWDRVFKHLLDQK--KGKVTVFYCG 132 (156)
Q Consensus 99 gLrs~Thf-GRP--nw~~if~~v~~~~--~~~VGVF~CG 132 (156)
-+-+.|+. |+| +|..+++.+.... ..+|+||.||
T Consensus 51 i~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 51 ILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred EEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence 34567775 875 5888888775432 4789999998
No 101
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=28.92 E-value=32 Score=31.26 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=10.3
Q ss_pred CCeeEEEEeCCh
Q psy8389 123 KGKVTVFYCGPP 134 (156)
Q Consensus 123 ~~~VGVF~CGP~ 134 (156)
+.+|++|+|||-
T Consensus 34 ~~~v~~YvCGpT 45 (411)
T TIGR03447 34 GPEAGMYVCGIT 45 (411)
T ss_pred CCcceEEEeCCc
Confidence 468999999993
No 102
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=28.79 E-value=36 Score=25.19 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=9.6
Q ss_pred CeeEEEEeCCh
Q psy8389 124 GKVTVFYCGPP 134 (156)
Q Consensus 124 ~~VGVF~CGP~ 134 (156)
..|+||.||+.
T Consensus 75 aavDiftCg~~ 85 (112)
T TIGR03330 75 AAVDVFTCGDH 85 (112)
T ss_pred EEEEEEecCCC
Confidence 58999999984
No 103
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.46 E-value=75 Score=24.36 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCccccc-cCCC--ChHHHHHHHHhcC--CCeeEEEEeC
Q psy8389 99 GLKTRTN-AGRP--NWDRVFKHLLDQK--KGKVTVFYCG 132 (156)
Q Consensus 99 gLrs~Th-fGRP--nw~~if~~v~~~~--~~~VGVF~CG 132 (156)
.+-+.|+ .|+| +|..+++.+.... ..+|+||-||
T Consensus 49 i~gspty~~g~~p~~~~~fl~~l~~~~l~gk~v~~fg~g 87 (167)
T TIGR01752 49 ILGTPTWGVGELQEDWEDFLPTLEELDFTGKTVALFGLG 87 (167)
T ss_pred EEEecCCCCCcCcHHHHHHHHHhhcCCCCCCEEEEEecC
Confidence 3556676 5765 5778888776432 4789999997
No 104
>PRK12359 flavodoxin FldB; Provisional
Probab=26.26 E-value=82 Score=24.95 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=25.3
Q ss_pred cccc-cCCC--ChHHHHHHHHhcC--CCeeEEEEeCCh
Q psy8389 102 TRTN-AGRP--NWDRVFKHLLDQK--KGKVTVFYCGPP 134 (156)
Q Consensus 102 s~Th-fGRP--nw~~if~~v~~~~--~~~VGVF~CGP~ 134 (156)
+.|. .|.+ +|..+++.+.... ..+|+||=||..
T Consensus 53 ~pTw~~Gel~~d~~~~~~~l~~~dl~gK~vAlFG~Gd~ 90 (172)
T PRK12359 53 IPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGMGDQ 90 (172)
T ss_pred ecccCCCcCcHHHHHHHHHHhhCCCCCCEEEEEeCCCC
Confidence 4553 5654 8999999988764 479999999996
No 105
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=26.08 E-value=41 Score=32.16 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.9
Q ss_pred CCeeEEEEeCC
Q psy8389 123 KGKVTVFYCGP 133 (156)
Q Consensus 123 ~~~VGVF~CGP 133 (156)
+.+|+.|+|||
T Consensus 58 ~~~v~~Y~CGP 68 (651)
T PTZ00399 58 GRQVRWYTCGP 68 (651)
T ss_pred CCeeEEEEeCC
Confidence 46899999999
No 106
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=25.50 E-value=1.3e+02 Score=21.73 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHhcCCCeeE-EEEeCChhhHHHHHhhcccc
Q psy8389 108 RPNWDRVFKHLLDQKKGKVT-VFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 108 RPnw~~if~~v~~~~~~~VG-VF~CGP~~L~~~l~~~c~~~ 147 (156)
...++.+++-++...|++++ ||++-+|.+.+.+-+.++.+
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~ 122 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPF 122 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGG
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhh
Confidence 33456677777777899887 99999999999999999877
No 107
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=25.28 E-value=45 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=12.7
Q ss_pred CeeEEEEeCCh-hhHHHHHh
Q psy8389 124 GKVTVFYCGPP-QLARILRL 142 (156)
Q Consensus 124 ~~VGVF~CGP~-~L~~~l~~ 142 (156)
..|+||.||+. ...+.++.
T Consensus 88 aavDiftCg~~~~p~~a~~~ 107 (127)
T PRK00458 88 ATVDVYTCGEHTDPQKAFEY 107 (127)
T ss_pred EEEEEEecCCCCCHHHHHHH
Confidence 58999999984 33344433
No 108
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=24.26 E-value=44 Score=30.42 Aligned_cols=12 Identities=50% Similarity=1.232 Sum_probs=10.4
Q ss_pred CCCeeEEEEeCC
Q psy8389 122 KKGKVTVFYCGP 133 (156)
Q Consensus 122 ~~~~VGVF~CGP 133 (156)
.+++|.+|+|||
T Consensus 18 ~~~~v~~yvcgp 29 (465)
T TIGR00435 18 VQGKVKMYVCGP 29 (465)
T ss_pred CCCcceEEEecC
Confidence 456899999999
No 109
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=24.17 E-value=1.4e+02 Score=20.45 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.6
Q ss_pred ccccCCCChHHHHHHHHhc---CCCeeEEEEeCChhhHH
Q psy8389 103 RTNAGRPNWDRVFKHLLDQ---KKGKVTVFYCGPPQLAR 138 (156)
Q Consensus 103 ~ThfGRPnw~~if~~v~~~---~~~~VGVF~CGP~~L~~ 138 (156)
+-+||| ||+.+.+-+... .+..+-|.+.+...+.+
T Consensus 25 P~yfG~-NlDAl~D~L~d~~~~~~~~~~i~~~~~~~~~~ 62 (90)
T PF01337_consen 25 PDYFGR-NLDALWDCLTDLSWIPEEPIVIIWENADKLKK 62 (90)
T ss_dssp -TTSSS-SHHHHHHHHHCT---S-SSEEEEEETHHHHHH
T ss_pred CchhcC-CHHHHHHHhcCcccCCCCCEEEEEcCcHHHHH
Confidence 558998 999999999987 34788899988877655
No 110
>PRK05568 flavodoxin; Provisional
Probab=24.15 E-value=1.5e+02 Score=21.47 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=31.4
Q ss_pred cccccCCccccccCC----CChHHHHHHHHhcC-CCeeEEEEe---CChhhHHHHHhhccc
Q psy8389 94 RDLITGLKTRTNAGR----PNWDRVFKHLLDQK-KGKVTVFYC---GPPQLARILRLKCDQ 146 (156)
Q Consensus 94 ~d~iTgLrs~ThfGR----Pnw~~if~~v~~~~-~~~VGVF~C---GP~~L~~~l~~~c~~ 146 (156)
.|.| .+-++|+++. +.+..+++.+.... ..++++|.| +.....+.+.+.+..
T Consensus 49 ~d~i-ilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~ 108 (142)
T PRK05568 49 ADVV-ALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEG 108 (142)
T ss_pred CCEE-EEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHHHH
Confidence 4443 3556777765 36889999886443 468888886 323344555555443
No 111
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=24.03 E-value=46 Score=30.20 Aligned_cols=12 Identities=50% Similarity=1.254 Sum_probs=10.4
Q ss_pred CCCeeEEEEeCC
Q psy8389 122 KKGKVTVFYCGP 133 (156)
Q Consensus 122 ~~~~VGVF~CGP 133 (156)
++++|.+|+|||
T Consensus 20 ~~~~v~~yvcgP 31 (463)
T PRK00260 20 EPGKVKMYVCGP 31 (463)
T ss_pred CCCcceEEEeCC
Confidence 357899999999
No 112
>KOG3829|consensus
Probab=23.97 E-value=28 Score=32.18 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=37.3
Q ss_pred CCccccccCCCChH--HHHHHHHhcC---C---CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 99 GLKTRTNAGRPNWD--RVFKHLLDQK---K---GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 99 gLrs~ThfGRPnw~--~if~~v~~~~---~---~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.|-.---||||+.+ +|+.-+.++- + .+.-+|.=||..|++.+++...+-
T Consensus 380 hLDngr~FGrp~~De~sILaPL~QCCliRkST~~~L~~f~~gpk~Lt~~l~esl~qD 436 (486)
T KOG3829|consen 380 HLDNGRAFGRPSHDELSILAPLYQCCLIRKSTWDRLQVFSNGPKVLTEALDESLSQD 436 (486)
T ss_pred EeccccccCCCCcchHHHHHHHHhhheeeHHHHHHHHHHhcCChhHHHHHHHHhccC
Confidence 44444469999997 5688888763 2 378899999999999998876553
No 113
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=23.66 E-value=1.1e+02 Score=24.13 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhccceecCcccCCCCCCCCCCCcceeEEEEEecCCcccch-hHhhcCccccccCCcceeEEe
Q psy8389 4 KVKKRQRLLATLERKFSGKVLGGGKQNGGTGGSVDANIRGKMVVFKNHHGASGYT-NESFCSLPEDFKMGNIGVYCF 79 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kkVyFiR~~~~feWf-~dll~eVe~~d~~~~IhiylT 79 (156)
-+++++++++...=-.-+.|..+|..+.-.=+-..-..+ ..+||. +|- +..-.+|+.. +.|++++-
T Consensus 6 ~~~~~~~~~e~~kv~~l~tv~~~g~phsRpM~f~hdg~~-~tiwf~------T~kds~~v~eik~n---~~v~v~~~ 72 (145)
T COG3871 6 ALQALAELLEGSKVGMLATVQENGHPHSRPMTFNHDGPK-GTIWFF------TNKDSRKVEEIKKN---PKVCVLFG 72 (145)
T ss_pred HHHHHHHHHhhCceEEEEEecCCCCccccceeccCCCCc-ccEEee------ccCchHHHHHHhhC---CcEEEEEe
Confidence 356666666654333334444444444322221122333 678887 333 4556677766 88888765
No 114
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=23.38 E-value=28 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=12.9
Q ss_pred EEE-ecCCcccchhH
Q psy8389 47 VFK-NHHGASGYTNE 60 (156)
Q Consensus 47 yFi-R~~~~feWf~d 60 (156)
||| |.+|..||+..
T Consensus 1 ~fIsRH~GAieW~~~ 15 (93)
T PF09652_consen 1 WFISRHPGAIEWAKQ 15 (93)
T ss_pred CeeeecccHHHHHHH
Confidence 899 99999999966
No 115
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=23.11 E-value=57 Score=25.28 Aligned_cols=21 Identities=14% Similarity=0.380 Sum_probs=13.7
Q ss_pred CeeEEEEeCCh-hhHHHHHhhc
Q psy8389 124 GKVTVFYCGPP-QLARILRLKC 144 (156)
Q Consensus 124 ~~VGVF~CGP~-~L~~~l~~~c 144 (156)
..|+||.||+. ...+.+....
T Consensus 76 aavDIftCg~~~~p~~a~~~L~ 97 (139)
T PRK04025 76 AALDVYTCGEKADPEKAVDYIL 97 (139)
T ss_pred EEEEEEecCCCCCHHHHHHHHH
Confidence 58999999995 4444443333
No 116
>PHA02629 A-type inclusion body protein; Provisional
Probab=22.69 E-value=74 Score=21.22 Aligned_cols=20 Identities=50% Similarity=0.926 Sum_probs=12.8
Q ss_pred HHHHHhhhhccceecCcccCCCCC
Q psy8389 11 LLATLERKFSGKVLGGGKQNGGTG 34 (156)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (156)
-+|.||+|.. -||.+|||.|
T Consensus 4 kiadle~klr----d~gng~~gng 23 (61)
T PHA02629 4 KIADLEKKLR----DGGNGNGGNG 23 (61)
T ss_pred hHHHHHHHHH----ccCCCCCCCC
Confidence 4688999865 3555555554
No 117
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=22.65 E-value=1.6e+02 Score=22.48 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=31.7
Q ss_pred cCCCChHHHHHHHHhcCCCeeEEEEeCChhhHHHHHhhcc
Q psy8389 106 AGRPNWDRVFKHLLDQKKGKVTVFYCGPPQLARILRLKCD 145 (156)
Q Consensus 106 fGRPnw~~if~~v~~~~~~~VGVF~CGP~~L~~~l~~~c~ 145 (156)
+-||-..++++.+++. -.|+||.-|++..++.+-+.-.
T Consensus 42 ~~RPgl~eFL~~l~~~--yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW--YELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred EECCCHHHHHHHHHhc--CEEEEEcCCcHHHHHHHHHHHC
Confidence 3799999999999865 5899999999998877766544
No 118
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=22.64 E-value=74 Score=26.94 Aligned_cols=26 Identities=15% Similarity=0.522 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCee-EEEEeCChhhHHH
Q psy8389 114 VFKHLLDQKKGKV-TVFYCGPPQLARI 139 (156)
Q Consensus 114 if~~v~~~~~~~V-GVF~CGP~~L~~~ 139 (156)
+|-..+....+.+ -+.++|||+++|.
T Consensus 38 i~i~aa~~r~~~l~h~lf~GPPG~GKT 64 (233)
T PF05496_consen 38 ILIRAAKKRGEALDHMLFYGPPGLGKT 64 (233)
T ss_dssp HHHHHHHCTTS---EEEEESSTTSSHH
T ss_pred HHHHHHHhcCCCcceEEEECCCccchh
Confidence 3444444334444 4899999988764
No 119
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=22.22 E-value=70 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.215 Sum_probs=21.8
Q ss_pred hHHHHHHHHhcCCCeeEEEEeCChhhHHH
Q psy8389 111 WDRVFKHLLDQKKGKVTVFYCGPPQLARI 139 (156)
Q Consensus 111 w~~if~~v~~~~~~~VGVF~CGP~~L~~~ 139 (156)
.+++++.+...-+....|++||++.++++
T Consensus 113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKS 141 (190)
T cd01855 113 VEELINAIKKLAKKGGDVYVVGATNVGKS 141 (190)
T ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCCCHH
Confidence 57788888776555677999999886554
No 120
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=21.72 E-value=66 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred cccCCccccccCCCChHHHHHHHHhcCCCeeEEEEe
Q psy8389 96 LITGLKTRTNAGRPNWDRVFKHLLDQKKGKVTVFYC 131 (156)
Q Consensus 96 ~iTgLrs~ThfGRPnw~~if~~v~~~~~~~VGVF~C 131 (156)
++.|.....+.++|.+.+.++.+-......||++++
T Consensus 12 lfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~ 47 (205)
T PF02190_consen 12 LFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLV 47 (205)
T ss_dssp --TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE
T ss_pred cCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEee
Confidence 567888888999999999999888764336999999
No 121
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.59 E-value=59 Score=24.92 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=9.6
Q ss_pred CeeEEEEeCCh
Q psy8389 124 GKVTVFYCGPP 134 (156)
Q Consensus 124 ~~VGVF~CGP~ 134 (156)
..|+||.||+.
T Consensus 77 aavDiftCg~~ 87 (131)
T PRK01236 77 VTLDVYTCGDP 87 (131)
T ss_pred EEEEEEecCCC
Confidence 48999999985
No 122
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.10 E-value=67 Score=24.90 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=12.8
Q ss_pred CeeEEEEeCCh-hhHHHHHh
Q psy8389 124 GKVTVFYCGPP-QLARILRL 142 (156)
Q Consensus 124 ~~VGVF~CGP~-~L~~~l~~ 142 (156)
..|+||.||+. ...+.++.
T Consensus 89 aavDiftCg~~~~p~~a~~~ 108 (139)
T PRK02770 89 AAVDVFTCGDHTMPEKACQY 108 (139)
T ss_pred EEEEEEecCCCCCHHHHHHH
Confidence 58999999995 33333333
No 123
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=21.01 E-value=68 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=9.5
Q ss_pred CeeEEEEeCCh
Q psy8389 124 GKVTVFYCGPP 134 (156)
Q Consensus 124 ~~VGVF~CGP~ 134 (156)
..|+||.||+.
T Consensus 78 aavDiftCg~~ 88 (123)
T PRK01706 78 AAIDCYTCGTT 88 (123)
T ss_pred EEEEEEecCCC
Confidence 48999999984
No 124
>KOG0733|consensus
Probab=20.90 E-value=47 Score=32.48 Aligned_cols=20 Identities=35% Similarity=0.673 Sum_probs=15.4
Q ss_pred eeEEEEeCChhhHHHHHhhc
Q psy8389 125 KVTVFYCGPPQLARILRLKC 144 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c 144 (156)
.-||+.||||+-++.|-..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred CCceEEeCCCCccHHHHHHH
Confidence 46899999999877765444
No 125
>KOG1158|consensus
Probab=20.38 E-value=61 Score=31.26 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=16.7
Q ss_pred eEEEEeCChh-hHHHHHhhccc
Q psy8389 126 VTVFYCGPPQ-LARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~~-L~~~l~~~c~~ 146 (156)
=-||+||+.. |++.|..+-.+
T Consensus 593 g~iYvCGd~~~Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 593 GHIYVCGDAKGMAKDVQDALVR 614 (645)
T ss_pred cEEEEecCCccchHHHHHHHHH
Confidence 3499999999 99988876543
Done!