Query psy8389
Match_columns 156
No_of_seqs 173 out of 408
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:23:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a1f_A Cytochrome B-245 heavy 99.6 1.1E-15 3.8E-20 115.4 8.7 117 40-156 52-186 (186)
2 4g1v_A Flavohemoglobin; three 97.8 3.2E-05 1.1E-09 65.6 5.9 85 41-156 301-390 (399)
3 1tvc_A Methane monooxygenase c 97.5 0.00018 6.3E-09 56.7 6.6 96 41-156 146-244 (250)
4 4eh1_A Flavohemoprotein; struc 97.4 8.3E-05 2.8E-09 58.1 3.5 89 43-156 144-235 (243)
5 2pia_A Phthalate dioxygenase r 97.4 0.00048 1.6E-08 56.9 7.6 85 42-156 140-225 (321)
6 1qfj_A Protein (flavin reducta 97.2 0.00025 8.5E-09 55.1 4.2 95 41-156 131-229 (232)
7 3jqq_A Ferredoxin NADP reducta 97.2 0.00015 5.3E-09 60.0 2.8 92 41-148 209-301 (316)
8 2r6h_A NADH:ubiquinone oxidore 97.1 0.00071 2.4E-08 54.2 5.5 99 41-156 186-289 (290)
9 2eix_A NADH-cytochrome B5 redu 97.0 0.0013 4.5E-08 51.3 6.7 88 41-147 146-233 (243)
10 1cqx_A Flavohemoprotein; globi 96.7 0.0031 1.1E-07 53.1 6.9 100 41-156 294-396 (403)
11 1krh_A Benzoate 1,2-dioxygenas 96.4 0.00085 2.9E-08 55.3 1.5 32 125-156 301-335 (338)
12 1gvh_A Flavohemoprotein; oxido 96.4 0.0023 7.8E-08 53.9 3.9 99 41-156 288-390 (396)
13 3vo2_A Putative uncharacterize 95.9 0.0047 1.6E-07 50.5 3.5 24 124-147 261-284 (310)
14 3lo8_A Ferredoxin--NADP reduct 95.7 0.0063 2.1E-07 49.5 3.2 24 124-147 262-285 (311)
15 3lyu_A Putative hydrogenase; t 95.4 0.0056 1.9E-07 45.2 1.9 22 127-148 110-131 (142)
16 2cnd_A NADH-dependent nitrate 95.3 0.036 1.2E-06 43.7 6.4 92 41-147 167-259 (270)
17 2bmw_A Ferredoxin--NADP reduct 95.3 0.024 8.2E-07 45.8 5.4 22 124-145 255-276 (304)
18 1umk_A B5R, NADH-cytochrome B5 95.1 0.028 9.6E-07 44.5 5.1 89 41-147 176-265 (275)
19 3lrx_A Putative hydrogenase; a 94.9 0.016 5.6E-07 43.3 3.2 22 127-148 115-136 (158)
20 4fk8_A Ferredoxin--NADP reduct 94.5 0.015 5.1E-07 46.1 2.1 25 124-148 227-251 (271)
21 2b5o_A FNR, ferredoxin--NADP r 94.0 0.073 2.5E-06 45.4 5.5 24 124-147 353-376 (402)
22 2bgi_A Ferredoxin-NADP(H) redu 93.6 0.026 8.8E-07 45.1 1.8 24 124-147 225-248 (272)
23 2qdx_A Ferredoxin reductase; o 93.4 0.027 9.1E-07 44.3 1.6 24 124-147 211-234 (257)
24 2gpj_A Siderophore-interacting 92.3 0.036 1.2E-06 44.0 1.0 24 124-147 190-214 (252)
25 1fdr_A Flavodoxin reductase; f 90.9 0.079 2.7E-06 41.2 1.5 24 124-147 205-229 (248)
26 1fnb_A Ferredoxin-NADP+ reduct 89.8 0.095 3.2E-06 42.6 1.2 23 124-146 265-287 (314)
27 1ep3_B Dihydroorotate dehydrog 89.7 0.25 8.7E-06 38.9 3.5 22 125-147 191-212 (262)
28 4dql_A Bifunctional P-450/NADP 89.3 0.21 7E-06 42.9 2.9 78 50-146 282-360 (393)
29 1f20_A Nitric-oxide synthase; 87.1 0.19 6.6E-06 43.5 1.4 22 125-146 381-402 (435)
30 2rc5_A Ferredoxin-NADP reducta 84.1 0.39 1.3E-05 38.8 1.7 20 128-147 269-289 (314)
31 1ddg_A Sulfite reductase (NADP 81.2 0.47 1.6E-05 40.2 1.2 21 126-146 322-343 (374)
32 1tll_A Nitric-oxide synthase, 79.7 0.55 1.9E-05 43.1 1.2 22 125-146 602-623 (688)
33 3qfs_A CPR, P450R, NADPH--cyto 75.0 0.82 2.8E-05 40.2 0.9 22 125-146 404-426 (458)
34 2qtl_A MSR;, methionine syntha 74.2 0.95 3.2E-05 40.5 1.1 21 126-146 486-507 (539)
35 3qe2_A CPR, P450R, NADPH--cyto 73.2 0.96 3.3E-05 40.9 0.9 21 126-146 565-586 (618)
36 2bpo_A CPR, P450R, NADPH-cytoc 72.7 1.1 3.8E-05 41.0 1.2 22 125-146 629-651 (682)
37 1ykg_A SIR-FP, sulfite reducta 49.6 22 0.00074 25.9 4.4 47 100-146 62-122 (167)
38 5nul_A Flavodoxin; electron tr 42.5 27 0.00093 24.0 3.9 48 100-147 51-106 (138)
39 1f4p_A Flavodoxin; electron tr 40.7 27 0.00092 24.3 3.6 47 100-146 54-113 (147)
40 2fcr_A Flavodoxin; electron tr 40.6 17 0.00058 26.5 2.6 47 100-146 51-115 (173)
41 3u5c_H RP30, RP40, 40S ribosom 38.5 12 0.00043 29.5 1.6 15 8-22 74-88 (190)
42 1yob_A Flavodoxin 2, flavodoxi 34.8 34 0.0012 25.0 3.5 38 109-146 72-119 (179)
43 2iii_A S-adenosylmethionine de 32.3 26 0.00088 25.9 2.4 11 124-134 77-87 (135)
44 1ag9_A Flavodoxin; electron tr 31.9 29 0.00099 25.3 2.7 47 100-146 51-110 (175)
45 3tqo_A Cysteinyl-tRNA syntheta 29.4 23 0.00077 31.2 1.9 11 123-133 23-33 (462)
46 1bvy_F Protein (cytochrome P45 29.2 44 0.0015 25.3 3.3 33 101-133 74-113 (191)
47 1vr7_A Adometdc, samdc, S-aden 28.3 25 0.00086 26.2 1.7 11 124-134 88-98 (142)
48 2hna_A Protein MIOC, flavodoxi 26.2 36 0.0012 23.8 2.3 35 100-134 52-93 (147)
49 3tvk_A DGC, diguanylate cyclas 24.8 70 0.0024 23.8 3.7 36 92-132 4-40 (179)
50 3edo_A Flavoprotein, putative 21.1 62 0.0021 22.9 2.7 49 100-148 82-135 (151)
No 1
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=115.40 Aligned_cols=117 Identities=29% Similarity=0.431 Sum_probs=79.4
Q ss_pred CcceeEEEEEecCCcccchhHhhcCccccc------cCCcceeEEecccCCCCC---CcccCccccccCCccccccCCCC
Q psy8389 40 NIRGKMVVFKNHHGASGYTNESFCSLPEDF------KMGNIGVYCFSLTNSPYP---LSSQEKRDLITGLKTRTNAGRPN 110 (156)
Q Consensus 40 ~~k~kkVyFiR~~~~feWf~dll~eVe~~d------~~~~IhiylT~~~~~~e~---~~~~~~~d~iTgLrs~ThfGRPn 110 (156)
.-++..+|..|+..++.||.+.|.++.+.. ..-.+++|+|........ .....+.+.++++...++.||||
T Consensus 52 ~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~ 131 (186)
T 3a1f_A 52 LKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPN 131 (186)
T ss_dssp CCEEEEEEEESCTTTTHHHHHHHHHHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCC
T ss_pred CcEEEEEEEECCcchHHHHHHHHHHHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCC
Confidence 456778888899999999999999887641 123467888843211000 00111235567777788899999
Q ss_pred hHHHHHHHHhcCC-CeeEEEEeCChhhHHHHHhhcccc--------ceeEeccCC
Q psy8389 111 WDRVFKHLLDQKK-GKVTVFYCGPPQLARILRLKCDQF--------GFSFRKEVF 156 (156)
Q Consensus 111 w~~if~~v~~~~~-~~VGVF~CGP~~L~~~l~~~c~~~--------~F~fhkEnF 156 (156)
++.+++.+....+ ..+.||+|||++|.+.+++++.+. +|.||+|+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~~~~~~~~~~~~E~F 186 (186)
T 3a1f_A 132 WDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 186 (186)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCCSTTCCEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhccCCCCCEEEEEeccC
Confidence 9999999876654 689999999999999999998654 288999998
No 2
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=97.76 E-value=3.2e-05 Score=65.61 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=54.4
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCccee--EEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHH
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGV--YCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHL 118 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~Ihi--ylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v 118 (156)
-++..+|..|+..++ +|.+.+.++.+. .+++++ +++ . + -||++...+-+.+
T Consensus 301 ~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s--~----------~------------~g~~~~~~l~~~~ 353 (399)
T 4g1v_A 301 RPIYWIQSSYDEKTQ-AFKKHVDELLAE--CANVDKIIVHT--D----------T------------EPLINAAFLKEKS 353 (399)
T ss_dssp SCEEEEEEESSSTTS-TTHHHHHHHHTT--CSSEEEEEEET--T----------T------------SCCCCHHHHHHHS
T ss_pred CCEEEEEecCCHHHh-hhHHHHHHHHHh--CCCcEEEEEEe--C----------C------------CCcccHHHHHhhC
Confidence 456667777887777 666666666554 233433 332 1 0 0788865443322
Q ss_pred HhcCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 119 LDQKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 119 ~~~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
+....||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 354 ----~~~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 390 (399)
T 4g1v_A 354 ----PAHADVYTCGSLAFMQAMIGHLKELEHRDDMIHYEPF 390 (399)
T ss_dssp ----CSSCEEEEEECHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred ----CCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence 237789999999999999999987642 3555655
No 3
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=97.51 E-value=0.00018 Score=56.73 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=55.9
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|+..++ ++.+.+.++.+. .++++++++-... . +...| +-||.+ +.+.+.+..
T Consensus 146 ~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~-------~---~~~~g-----~~g~v~-~~l~~~~~~ 206 (250)
T 1tvc_A 146 NETRIYFGVNTEPEL-FYIDELKSLERS--MRNLTVKACVWHP-------S---GDWEG-----EQGSPI-DALREDLES 206 (250)
T ss_dssp SCEEEEEECSSSTTC-CCHHHHHHHHHH--SSSCEEEECCSSC-------S---SCCSS-----SSSSSS-HHHHHHHHH
T ss_pred ceEEEEEEeCCHHHh-hhHHHHHHHHHh--CCCeEEEEEeccC-------C---CCcCC-----ccceeh-HHHHhhhhc
Confidence 456667777999888 667777777543 2455543320010 0 00011 245655 233333332
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
......||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 207 -~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~F 244 (250)
T 1tvc_A 207 -SDANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEKF 244 (250)
T ss_dssp -SSSSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECCC
T ss_pred -ccCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEEec
Confidence 1234579999999999999999987642 4666665
No 4
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=97.42 E-value=8.3e-05 Score=58.13 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=52.8
Q ss_pred eeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHhcC
Q psy8389 43 GKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQK 122 (156)
Q Consensus 43 ~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~~~ 122 (156)
+..+|..|+..++ ++.+.+.++.+.. .-.++++++.... + + .+-||++-..+ ...
T Consensus 144 v~l~~~~r~~~~~-~~~~el~~l~~~~-~~~~~~~~s~~~~--~--------~--------~~~g~~~~~~~-----~~~ 198 (243)
T 4eh1_A 144 VTYLYACNSAKEH-TFAQETAQLIAQQ-GWMQQVWYRDESA--D--------D--------VLQGEMQLAEL-----ILP 198 (243)
T ss_dssp EEEEEEESSGGGC-TTHHHHHHHHHHH-TCEEEEEESSCCC--T--------T--------CEESSCCCTTS-----CCC
T ss_pred EEEEEEeCChhhh-hHHHHHHHHHHhC-CeEEEEEEccCCC--c--------c--------cccCCccHHHe-----ecc
Confidence 6677777888877 4455556665543 2334445542110 0 0 03456554333 111
Q ss_pred CCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 123 KGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 123 ~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
.....||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 199 ~~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i~~E~F 235 (243)
T 4eh1_A 199 IEDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVF 235 (243)
T ss_dssp TTTCEEEEEECHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 256789999999999999999987642 3555655
No 5
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.37 E-value=0.00048 Score=56.89 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=53.4
Q ss_pred ceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHhc
Q psy8389 42 RGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQ 121 (156)
Q Consensus 42 k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~~ 121 (156)
++..+|..|+..++ +|.+.|.++.. .++++++.+ . +. .-||++...++..
T Consensus 140 ~v~l~~~~r~~~~~-~~~~el~~l~~---~~~~~~~~~--~----------~~----------~~g~~~~~~ll~~---- 189 (321)
T 2pia_A 140 SFRLYYLTRDPEGT-AFFDELTSDEW---RSDVKIHHD--H----------GD----------PTKAFDFWSVFEK---- 189 (321)
T ss_dssp EEEEEEEESCGGGC-TTHHHHHSTTT---TTTEEEEEC--T----------TC----------TTSCCCHHHHHSS----
T ss_pred cEEEEEEECChhhh-HHHHHHhcCcc---CCeEEEEEC--C----------Cc----------ccCccCHHHHhcc----
Confidence 45566666888776 44555555542 256665543 1 00 1267777665443
Q ss_pred CCCeeEEEEeCChhhHHHHHhhccccc-eeEeccCC
Q psy8389 122 KKGKVTVFYCGPPQLARILRLKCDQFG-FSFRKEVF 156 (156)
Q Consensus 122 ~~~~VGVF~CGP~~L~~~l~~~c~~~~-F~fhkEnF 156 (156)
.+....||+|||++|.+.+++.+..+. -..|.|.|
T Consensus 190 ~~~~~~vyvCGP~~m~~~v~~~l~~~~~~~i~~E~F 225 (321)
T 2pia_A 190 SKPAQHVYCCGPQALMDTVRDMTGHWPSGTVHFESF 225 (321)
T ss_dssp CCTTEEEEEESCHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCHhhEEEEec
Confidence 235567999999999999999998742 34555655
No 6
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=97.23 E-value=0.00025 Score=55.13 Aligned_cols=95 Identities=12% Similarity=0.028 Sum_probs=51.9
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
-++..+|..|+..++ ++.+.+.++..+ .++++++.+-... . +...+ +-||.+ +.+.+.+.
T Consensus 131 ~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~-------~---~~~~g-----~~g~v~-~~~~~~~~- 190 (232)
T 1qfj_A 131 RDITIYWGGREEQHL-YDLCELEALSLK--HPGLQVVPVVEQP-------E---AGWRG-----RTGTVL-TAVLQDHG- 190 (232)
T ss_dssp CCEEEEEEESSGGGC-TTHHHHHHHHHH--CTTEEEEEEESSC-------C---TTCCS-----EESCHH-HHHHHHCS-
T ss_pred CcEEEEEeeCCHHHh-hhHHHHHHHHHH--CCCeEEEEEEcCC-------C---CCcCC-----ceeeHH-HHHHHhcC-
Confidence 456667777888877 556666666543 2345543320010 0 00011 235544 23333221
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhc-cccce---eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKC-DQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c-~~~~F---~fhkEnF 156 (156)
......||+|||++|.+.+++.+ ....+ ..|.|.|
T Consensus 191 -~~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~E~F 229 (232)
T 1qfj_A 191 -TLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAF 229 (232)
T ss_dssp -CCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECTHH
T ss_pred -CccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEeee
Confidence 12456799999999999999987 66532 3455543
No 7
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=97.19 E-value=0.00015 Score=60.02 Aligned_cols=92 Identities=8% Similarity=-0.077 Sum_probs=48.5
Q ss_pred cceeEEEEEecCCcccchhHhhcCcccccc-CCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHH
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFK-MGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLL 119 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~-~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~ 119 (156)
-++..+|..|+..++ |+.+.|.++++... .-.+++++|..+.. .. . .+. .+..-+.+...+++-+.
T Consensus 209 ~~v~L~~g~R~~~d~-~~~~eL~~l~~~~~~~~~~~~~~s~~~~~-----~g-~----~g~--V~~~l~~~~~~~~~~l~ 275 (316)
T 3jqq_A 209 GYITIYYGVYNEDSI-LYLNELEYFQKMYPNNINIHYVFSYKQNS-----DA-T----SFY--VQDEIYKRKTEFLNLFN 275 (316)
T ss_dssp CCEEEEEEESSGGGC-TTHHHHHHHHHHCTTTEEEEEEEGGGCC---------C----BCC--HHHHHHHTHHHHHHHHH
T ss_pred CcEEEEEEecCHHHh-hcHHHHHHHHHhCCCcEEEEEEECCCccc-----CC-C----ccc--hhHHHHHhHHHHHHhhc
Confidence 345566666999888 88888888775411 12344455522100 00 0 000 00110111112222221
Q ss_pred hcCCCeeEEEEeCChhhHHHHHhhccccc
Q psy8389 120 DQKKGKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 120 ~~~~~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
.....||+|||++|.+.+++++....
T Consensus 276 ---~~~~~vyvCGP~~m~~~v~~~l~~~G 301 (316)
T 3jqq_A 276 ---NYKCELYICGKKSIRYKVMDILKSHD 301 (316)
T ss_dssp ---HTCCEEEEEECSTHHHHHHHHHHC--
T ss_pred ---cCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 13678999999999999999987754
No 8
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=97.08 E-value=0.00071 Score=54.23 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=53.4
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|+..++ ++.+.+.++.+. ..+++++++-.... ..+.-.+ .-||.+- .+.+.+-.
T Consensus 186 ~~v~l~~~~r~~~d~-~~~~el~~l~~~--~~~~~~~~~~s~~~--------~~~~~~g-----~~g~v~~-~~~~~~l~ 248 (290)
T 2r6h_A 186 RKVSYWYGARSKNEI-FYEEDFREIERE--FPNFKFHIALSDPQ--------PEDNWTG-----YVGFIHQ-VIYDNYLK 248 (290)
T ss_dssp SCEEEEEEESSGGGC-CSHHHHHHHHHH--CTTEEEEEEESSCC--------GGGCCCS-----CBSCHHH-HHHHHTTT
T ss_pred CcEEEEEEcCCHHHH-HHHHHHHHHHHh--CCCeEEEEEEccCC--------cccCCCC-----eeEecCH-HHHHhHHh
Confidence 356666777888877 666666666543 23454433200100 0000011 2355331 12233222
Q ss_pred c-C-CCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 121 Q-K-KGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~-~-~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
. . +....||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 249 ~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~F 289 (290)
T 2r6h_A 249 DHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFDDF 289 (290)
T ss_dssp TCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEECC
T ss_pred hccCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEeccc
Confidence 1 1 246779999999999999999877542 3555655
No 9
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=97.04 E-value=0.0013 Score=51.29 Aligned_cols=88 Identities=15% Similarity=0.268 Sum_probs=50.2
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|+..++ ++.+.+.++.+. .++++++++-... . +.-.+ +-||.+-. ++.++..
T Consensus 146 ~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~-------~---~~~~g-----~~g~v~~~-~l~~~~~ 206 (243)
T 2eix_A 146 TIINLIFANVNEDDI-LLRTELDDMAKK--YSNFKVYYVLNNP-------P---AGWTG-----GVGFVSAD-MIKQHFS 206 (243)
T ss_dssp CEEEEEEEEEEGGGC-TTHHHHHHHHHH--CTTEEEEEEEEEC-------C---TTCCS-----EESSCCHH-HHHHHSC
T ss_pred cEEEEEEEcCCHHHh-hHHHHHHHHHHH--CCCeEEEEEeCCC-------C---ccccC-----cCCccCHH-HHHHhcC
Confidence 456666667988877 666666666543 1345443321010 0 00011 34676632 3333222
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhcccc
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.......||+|||++|.+.+++.+...
T Consensus 207 ~~~~~~~vy~CGp~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 207 PPSSDIKVMMCGPPMMNKAMQGHLETL 233 (243)
T ss_dssp CTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 222567899999999999999998764
No 10
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=96.72 E-value=0.0031 Score=53.14 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=55.2
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
-++..+|..|+..+. +|.+.+.++.+....-.++++++.... .+. .+. ...+-||.+...+ .++.
T Consensus 294 ~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~s~~~~----------~~~-~~~-~~~~~G~i~~~~l-~~~~- 358 (403)
T 1cqx_A 294 RQVVFVHGARNSAVH-AMRDRLREAAKTYENLDLFVFYDQPLP----------EDV-QGR-DYDYPGLVDVKQI-EKSI- 358 (403)
T ss_dssp CCEEEEEEESCSSSC-HHHHHHHHHHHHCTTEEEEEEESSCCT----------TCC-BTT-TBSEESSCCGGGS-HHHH-
T ss_pred CcEEEEEEeCChhhC-cHHHHHHHHHHhCCCcEEEEEECCCCc----------ccc-ccc-ccCcCCCcCHHHH-hhcc-
Confidence 445566666998887 456667776554211234444442110 000 010 1123477775332 2211
Q ss_pred cCCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 121 QKKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
..+ ...||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 359 ~~~-~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 396 (403)
T 1cqx_A 359 LLP-DADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF 396 (403)
T ss_dssp CCT-TCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred CCC-CCEEEEeCCHHHHHHHHHHHHHcCCCHHHeEEeee
Confidence 112 5679999999999999999877642 3466665
No 11
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=96.44 E-value=0.00085 Score=55.33 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=24.7
Q ss_pred eeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
...||+|||++|.+.+++.+....+ .+|.|.|
T Consensus 301 ~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~e~F 335 (338)
T 1krh_A 301 EVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEKF 335 (338)
T ss_dssp CSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEee
Confidence 4569999999999999999877642 3555554
No 12
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=96.40 E-value=0.0023 Score=53.87 Aligned_cols=99 Identities=10% Similarity=0.134 Sum_probs=53.5
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
-++..+|..|+..++ +|.+.+.++..+...-.++++++.... .+. .+ ....+-||.+... +..
T Consensus 288 ~~v~l~~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~s~~~~----------~~~-~~-~~~~~~G~~~~~~----l~~ 350 (396)
T 1gvh_A 288 AQVNWFHAAENGDVH-AFADEVKELGQSLPRFTAHTWYRQPSE----------ADR-AK-GQFDSEGLMDLSK----LEG 350 (396)
T ss_dssp SCEEEEEEESCTTTC-CSHHHHHHHHHTSSSEEEEEEESSCCH----------HHH-HH-TCCSEESSCCGGG----SSS
T ss_pred CcEEEEEEeCCHHHh-hhHHHHHHHHHHCCCeEEEEEECCCCc----------ccc-cc-CccCccCcCCHHH----Hhh
Confidence 445666666998887 456666666554211234444441110 000 00 0011346666432 111
Q ss_pred c-CCCeeEEEEeCChhhHHHHHhhccccce---eEeccCC
Q psy8389 121 Q-KKGKVTVFYCGPPQLARILRLKCDQFGF---SFRKEVF 156 (156)
Q Consensus 121 ~-~~~~VGVF~CGP~~L~~~l~~~c~~~~F---~fhkEnF 156 (156)
. ......||+|||++|.+.+++.+....+ ..|.|.|
T Consensus 351 ~~~~~~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F 390 (396)
T 1gvh_A 351 AFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECF 390 (396)
T ss_dssp CCCCTTCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred ccCCCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 0 1125679999999999999999877642 3566665
No 13
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=95.94 E-value=0.0047 Score=50.52 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.7
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
....||+|||++|.+.+++++.+.
T Consensus 261 ~~~~vyvCGp~~M~~~v~~~L~~~ 284 (310)
T 3vo2_A 261 DNTYVYMCGLKGMEKGIDDIMLNL 284 (310)
T ss_dssp TTEEEEEEESTTHHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 578899999999999998887653
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=95.67 E-value=0.0063 Score=49.51 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=20.1
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
....||+|||++|.+.+++++...
T Consensus 262 ~~~~vyvCGp~~m~~~v~~~L~~~ 285 (311)
T 3lo8_A 262 GGAHIYFCGLKGMMPGIQDTLKKV 285 (311)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHH
Confidence 456799999999999998887654
No 15
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=95.43 E-value=0.0056 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||+|||++|.+.+.+.+++..
T Consensus 110 ~vy~CGP~~Mm~av~~~l~~~~ 131 (142)
T 3lyu_A 110 LVFMVGPVGDQKQVFEVVKEYG 131 (142)
T ss_dssp EEEEESCHHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 5999999999999999998875
No 16
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=95.29 E-value=0.036 Score=43.66 Aligned_cols=92 Identities=10% Similarity=0.211 Sum_probs=47.6
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
-++..+|..|+..++ ++.+.+.++.+. ...+++++.+-.... ... + +. ..+-||.+-. +..+...
T Consensus 167 ~~v~l~~~~r~~~d~-~~~~el~~l~~~-~~~~~~~~~~~s~~~----~~~---~---~~--~~~~g~v~~~-~l~~~l~ 231 (270)
T 2cnd_A 167 TEMHLVYANRTEDDI-LLRDELDRWAAE-YPDRLKVWYVIDQVK----RPE---E---GW--KYSVGFVTEA-VLREHVP 231 (270)
T ss_dssp CEEEEEEEESCGGGC-TTHHHHHHHHHH-CTTTEEEEEEESCCS----CGG---G---CC--CSEESSCCHH-HHHHHSC
T ss_pred cEEEEEEEcCCHHHc-chHHHHHHHHHH-CcCcEEEEEEECCCC----CCC---C---Cc--ccccccCCHH-HHHHhcC
Confidence 455666666988877 455556665433 113465544311100 000 0 00 1134676632 3333222
Q ss_pred cCCCeeEEEEeCChhhHHH-HHhhcccc
Q psy8389 121 QKKGKVTVFYCGPPQLARI-LRLKCDQF 147 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~~-l~~~c~~~ 147 (156)
.......||+|||++|.+. +++.....
T Consensus 232 ~~~~~~~vyvCGp~~m~~~~~~~~L~~~ 259 (270)
T 2cnd_A 232 EGGDDTLALACGPPPMIQFAISPNLEKM 259 (270)
T ss_dssp CCSSSEEEEEECCHHHHHTTTHHHHHTT
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 2224567999999999996 56666554
No 17
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=95.27 E-value=0.024 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=17.8
Q ss_pred CeeEEEEeCChhhHHHHHhhcc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCD 145 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~ 145 (156)
..-.||+|||++|.+.|++++.
T Consensus 255 ~~~~vyvCGp~~m~~~v~~~l~ 276 (304)
T 2bmw_A 255 QKTHTYICGPPPMEEGIDAALS 276 (304)
T ss_dssp TTEEEEEEECTTHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHH
Confidence 3557999999999998876654
No 18
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=95.08 E-value=0.028 Score=44.52 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=48.6
Q ss_pred cceeEEEEEecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHh
Q psy8389 41 IRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLD 120 (156)
Q Consensus 41 ~k~kkVyFiR~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~ 120 (156)
.++..+|..|+..++ ++.+.|.++.+.- .++++++.+-... ..+ . .-+-||.+-. ++.+...
T Consensus 176 ~~v~l~~~~r~~~d~-~~~~el~~l~~~~-~~~~~~~~~~s~~-------~~~------~--~~~~g~v~~~-~l~~~l~ 237 (275)
T 1umk_A 176 TVCHLLFANQTEKDI-LLRPELEELRNKH-SARFKLWYTLDRA-------PEA------W--DYGQGFVNEE-MIRDHLP 237 (275)
T ss_dssp CEEEEEEEESSGGGC-TTHHHHHHHHHHC-TTTEEEEEEESSC-------CSS------C--SSEESSCCHH-HHHHHSC
T ss_pred cEEEEEEEcCCHHHh-hHHHHHHHHHHhC-cCcEEEEEEEcCC-------Ccc------c--cCccCccCHH-HHHHhcC
Confidence 445566666988777 6666666665431 1256665541110 000 0 0123665532 2332211
Q ss_pred cCCCeeEEEEeCChhhHH-HHHhhcccc
Q psy8389 121 QKKGKVTVFYCGPPQLAR-ILRLKCDQF 147 (156)
Q Consensus 121 ~~~~~VGVF~CGP~~L~~-~l~~~c~~~ 147 (156)
.......||+|||++|.+ .+++.+...
T Consensus 238 ~~~~~~~vyvCGp~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 238 PPEEEPLVLMCGPPPMIQYACLPNLDHV 265 (275)
T ss_dssp CGGGCCEEEEESCHHHHHHTTHHHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 112456799999999999 888777654
No 19
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=94.93 E-value=0.016 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEEeCChhhHHHHHhhccccc
Q psy8389 127 TVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 127 GVF~CGP~~L~~~l~~~c~~~~ 148 (156)
-||.|||++|.+.+++.+.+..
T Consensus 115 ~vy~CGP~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 115 LVFMVGPVGDQKQVFEVVKEYG 136 (158)
T ss_dssp EEEEESCHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 5999999999999999988763
No 20
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=94.48 E-value=0.015 Score=46.15 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.2
Q ss_pred CeeEEEEeCChhhHHHHHhhccccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQFG 148 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~~ 148 (156)
....||+|||++|.+.+++++.+..
T Consensus 227 ~~~~v~vCGp~~m~~~v~~~l~~~g 251 (271)
T 4fk8_A 227 EQDRVMLCGSTAMLKDTTELLKKAG 251 (271)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 5778999999999999999998763
No 21
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=94.00 E-value=0.073 Score=45.45 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=19.7
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
..-.||+|||++|.+.+++++...
T Consensus 353 ~~~~vyvCGP~~M~~~v~~~L~~~ 376 (402)
T 2b5o_A 353 PNTHVYMCGLKGMQPPIDETFTAE 376 (402)
T ss_dssp TTEEEEEEECGGGHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHH
Confidence 356799999999999998877653
No 22
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=93.57 E-value=0.026 Score=45.05 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=21.0
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
....||+|||++|.+.+++.+...
T Consensus 225 ~~~~vyvCGp~~m~~~v~~~l~~~ 248 (272)
T 2bgi_A 225 ETDRAMVCGSLAFNVDVMKVLESY 248 (272)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999998765
No 23
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=93.41 E-value=0.027 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.8
Q ss_pred CeeEEEEeCChhhHHHHHhhcccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
....||+|||++|.+.+++.+...
T Consensus 211 ~~~~vyvCGp~~m~~~v~~~l~~~ 234 (257)
T 2qdx_A 211 QDDRAMICGSPSMLEETSAVLDSF 234 (257)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999988765
No 24
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=92.35 E-value=0.036 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.5
Q ss_pred CeeEEEEeCChhhHHHHHhhcc-cc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCD-QF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~-~~ 147 (156)
..-.||+|||++|.+.+++.+. ..
T Consensus 190 ~~~~vy~CGP~~m~~av~~~l~~~~ 214 (252)
T 2gpj_A 190 GEPAVWIACEFNSMRALRRHFKQAH 214 (252)
T ss_dssp SCEEEEEEEEHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHhc
Confidence 4567999999999999999887 44
No 25
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=90.90 E-value=0.079 Score=41.17 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.8
Q ss_pred CeeEEEEeCChhhHHHHHhhc-ccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKC-DQF 147 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c-~~~ 147 (156)
....||+|||++|.+.+++.+ ...
T Consensus 205 ~~~~vy~CGp~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 205 ETSHVMLCGNPQMVRDTQQLLKETR 229 (248)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 567799999999999999988 654
No 26
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=89.85 E-value=0.095 Score=42.58 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=18.7
Q ss_pred CeeEEEEeCChhhHHHHHhhccc
Q psy8389 124 GKVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 124 ~~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
..-.||+|||++|.+.+++.+..
T Consensus 265 ~~~~vyvCGp~~m~~~v~~~L~~ 287 (314)
T 1fnb_A 265 DNTYVYMCGLKGMEKGIDDIMVS 287 (314)
T ss_dssp TTEEEEEEECTTHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHH
Confidence 35679999999999998876544
No 27
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=89.65 E-value=0.25 Score=38.95 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.9
Q ss_pred eeEEEEeCChhhHHHHHhhcccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQF 147 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~~ 147 (156)
.-.||+|||++|.+.+++ +...
T Consensus 191 ~~~vyvCGp~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 191 VDALYTCGAPAMLKAVAK-KYDQ 212 (262)
T ss_dssp CSEEEEESCHHHHHHHHH-HTTT
T ss_pred CCEEEEECCHHHHHHHHH-HHhC
Confidence 446999999999999999 7665
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=89.25 E-value=0.21 Score=42.87 Aligned_cols=78 Identities=10% Similarity=0.073 Sum_probs=41.1
Q ss_pred ecCCcccchhHhhcCccccccCCcceeEEecccCCCCCCcccCccccccCCccccccCCCChHHHHHHHHhcCCCeeEEE
Q psy8389 50 NHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQKKGKVTVF 129 (156)
Q Consensus 50 R~~~~feWf~dll~eVe~~d~~~~IhiylT~~~~~~e~~~~~~~~d~iTgLrs~ThfGRPnw~~if~~v~~~~~~~VGVF 129 (156)
|++.+--++.+.+.++++. .++++++.-... ..+. .+ -.++.-|.+...+++-+. ..-.||
T Consensus 282 R~~~~d~ly~~el~~~~~~---~~l~l~~a~Sr~-------~~~~---k~--yVq~~l~~~~~~l~~~l~----~~~~vY 342 (393)
T 4dql_A 282 RSPHEDYLYQEELENAQSE---GIITLHTAFSRM-------PNQP---KT--YVQHVMEQDGKKLIELLD----QGAHFY 342 (393)
T ss_dssp SCTTTCCTTHHHHHHHHHT---TSCEEEEEESSC-------TTSC---CC--CHHHHHHHTHHHHHHHHH----TTCEEE
T ss_pred CCcchhhHHHHHHHHHHhC---CCeEEEEEEeCC-------CCCC---Cc--chhhHHHhCHHHHHHHHh----CCcEEE
Confidence 8854444667777777654 455543320010 0000 00 012233444555555443 245699
Q ss_pred EeCC-hhhHHHHHhhccc
Q psy8389 130 YCGP-PQLARILRLKCDQ 146 (156)
Q Consensus 130 ~CGP-~~L~~~l~~~c~~ 146 (156)
+||| +.|++.|+++..+
T Consensus 343 vCGp~~~M~~~V~~~L~~ 360 (393)
T 4dql_A 343 ICGDGSQMAPAVEATLMK 360 (393)
T ss_dssp EEEETTTHHHHHHHHHHH
T ss_pred EECCchhhHHHHHHHHHH
Confidence 9999 6899888876654
No 29
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=87.11 E-value=0.19 Score=43.50 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.3
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.-.||+|||++|.+.|++++..
T Consensus 381 ~~~vYvCGp~~M~~~V~~~L~~ 402 (435)
T 1f20_A 381 GGHIYVCGDVTMAADVLKAIQR 402 (435)
T ss_dssp CCEEEEEECHHHHHHHHHHHHH
T ss_pred CcEEEEeCChhHHHHHHHHHHH
Confidence 3469999999999999887654
No 30
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=84.13 E-value=0.39 Score=38.80 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=17.3
Q ss_pred EEEe-CChhhHHHHHhhcccc
Q psy8389 128 VFYC-GPPQLARILRLKCDQF 147 (156)
Q Consensus 128 VF~C-GP~~L~~~l~~~c~~~ 147 (156)
+|+| ||++|.+.|++.+...
T Consensus 269 ~yvCGGp~~m~~~v~~~L~~~ 289 (314)
T 2rc5_A 269 FYICGGPKGMEKGVIEEIQKI 289 (314)
T ss_dssp EEEEESSTTTHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHH
Confidence 5999 9999999999887654
No 31
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=81.18 E-value=0.47 Score=40.24 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=17.2
Q ss_pred eEEEEeC-ChhhHHHHHhhccc
Q psy8389 126 VTVFYCG-PPQLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CG-P~~L~~~l~~~c~~ 146 (156)
--||+|| |++|.+.|+++...
T Consensus 322 ~~vYvCG~p~~M~~~V~~~L~~ 343 (374)
T 1ddg_A 322 AHIYVCGDANRMAKDVEQALLE 343 (374)
T ss_dssp CEEEEEECTTTHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHH
Confidence 4599999 99999998876644
No 32
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=79.74 E-value=0.55 Score=43.09 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.5
Q ss_pred eeEEEEeCChhhHHHHHhhccc
Q psy8389 125 KVTVFYCGPPQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~~L~~~l~~~c~~ 146 (156)
.--||+|||++|.+.|++.+..
T Consensus 602 ~~~vYvCGp~~M~~~V~~~L~~ 623 (688)
T 1tll_A 602 GGHIYVCGDVTMAADVLKAIQR 623 (688)
T ss_dssp CCEEEEEEEHHHHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHH
Confidence 3469999999999999887654
No 33
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=75.05 E-value=0.82 Score=40.17 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=17.2
Q ss_pred eeEEEEeCCh-hhHHHHHhhccc
Q psy8389 125 KVTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
.--||+|||+ .|++.|+++...
T Consensus 404 ~~~vYvCGp~~~M~~~V~~~L~~ 426 (458)
T 3qfs_A 404 GAHIYVCGDARNMARDVQNTFYD 426 (458)
T ss_dssp TCEEEEEEETTTHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHH
Confidence 3469999996 799998877644
No 34
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=74.25 E-value=0.95 Score=40.48 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.0
Q ss_pred eEEEEeCCh-hhHHHHHhhccc
Q psy8389 126 VTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
--||+|||+ +|.+.|+++...
T Consensus 486 a~vYVCGp~~~M~~~V~~~L~~ 507 (539)
T 2qtl_A 486 GHIYVCGDAKNMAKDVHDALVQ 507 (539)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHH
Confidence 359999997 999999876644
No 35
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=73.22 E-value=0.96 Score=40.94 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=17.2
Q ss_pred eEEEEeCCh-hhHHHHHhhccc
Q psy8389 126 VTVFYCGPP-QLARILRLKCDQ 146 (156)
Q Consensus 126 VGVF~CGP~-~L~~~l~~~c~~ 146 (156)
--||+|||+ .|.+.|+++...
T Consensus 565 a~vYvCGp~~~M~~~V~~~L~~ 586 (618)
T 3qe2_A 565 AHIYVCGDARNMARDVQNTFYD 586 (618)
T ss_dssp CEEEEEEETTTHHHHHHHHHHH
T ss_pred cEEEEECCchHHHHHHHHHHHH
Confidence 369999996 999999887654
No 36
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=72.67 E-value=1.1 Score=41.00 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.5
Q ss_pred eeEEEEeCC-hhhHHHHHhhccc
Q psy8389 125 KVTVFYCGP-PQLARILRLKCDQ 146 (156)
Q Consensus 125 ~VGVF~CGP-~~L~~~l~~~c~~ 146 (156)
.--||+||| ++|.+.|++....
T Consensus 629 ~~~vYvCGpa~~M~~~V~~~L~~ 651 (682)
T 2bpo_A 629 GAFIYVCGDAKGMAKGVSTALVG 651 (682)
T ss_dssp TCEEEEEECSTTHHHHHHHHHHH
T ss_pred CcEEEEeCCchHhHHHHHHHHHH
Confidence 345999999 7999998876644
No 37
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=49.59 E-value=22 Score=25.85 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=32.5
Q ss_pred Cccccc-cCCCC--hHHHHHHHHhc-----CCCeeEEEEeCCh------hhHHHHHhhccc
Q psy8389 100 LKTRTN-AGRPN--WDRVFKHLLDQ-----KKGKVTVFYCGPP------QLARILRLKCDQ 146 (156)
Q Consensus 100 Lrs~Th-fGRPn--w~~if~~v~~~-----~~~~VGVF~CGP~------~L~~~l~~~c~~ 146 (156)
+-+.|+ .|+|. +..+++.+... ...+++||-||-. ...+.+.+.+.+
T Consensus 62 ~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~ 122 (167)
T 1ykg_A 62 VVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAE 122 (167)
T ss_dssp EEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHH
T ss_pred EEEcccCCCcCChhHHHHHHHHHhccccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 445777 78765 67888888752 1368999999976 455666666544
No 38
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=42.51 E-value=27 Score=24.01 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=32.4
Q ss_pred CccccccCC--C--ChHHHHHHHHhc-CCCeeEEEEeCCh---hhHHHHHhhcccc
Q psy8389 100 LKTRTNAGR--P--NWDRVFKHLLDQ-KKGKVTVFYCGPP---QLARILRLKCDQF 147 (156)
Q Consensus 100 Lrs~ThfGR--P--nw~~if~~v~~~-~~~~VGVF~CGP~---~L~~~l~~~c~~~ 147 (156)
+-+.|+.++ | ++..+++.+... ...+++||.|+.- .-.+.+++.+...
T Consensus 51 ig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~ 106 (138)
T 5nul_A 51 LGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWGDGKWMRDFEERMNGY 106 (138)
T ss_dssp EEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSSCSHHHHHHHHHHHHT
T ss_pred EEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCCCCChHHHHHHHHHHHC
Confidence 446778876 5 599999998764 3478999987432 2345666655543
No 39
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=40.66 E-value=27 Score=24.26 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=31.8
Q ss_pred Cccccc-cCC---C-ChHHHHHHHHhcC--CCeeEEEEeCC------hhhHHHHHhhccc
Q psy8389 100 LKTRTN-AGR---P-NWDRVFKHLLDQK--KGKVTVFYCGP------PQLARILRLKCDQ 146 (156)
Q Consensus 100 Lrs~Th-fGR---P-nw~~if~~v~~~~--~~~VGVF~CGP------~~L~~~l~~~c~~ 146 (156)
+-+.|+ .|. | +++.+++.+.... ..+++||.||. ....+.+++.+..
T Consensus 54 ~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~ 113 (147)
T 1f4p_A 54 LGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKN 113 (147)
T ss_dssp EEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHH
Confidence 445777 688 6 7899999886532 37899999974 2344556555543
No 40
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=40.58 E-value=17 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred Ccccccc-CCC------ChHHHH-HHHHhcC--CCeeEEEEeCCh--------hhHHHHHhhccc
Q psy8389 100 LKTRTNA-GRP------NWDRVF-KHLLDQK--KGKVTVFYCGPP--------QLARILRLKCDQ 146 (156)
Q Consensus 100 Lrs~Thf-GRP------nw~~if-~~v~~~~--~~~VGVF~CGP~--------~L~~~l~~~c~~ 146 (156)
+-+.|+. |+| +|..++ +.+.... ..+|+||-||-. ...+.+.+.+.+
T Consensus 51 ~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~ 115 (173)
T 2fcr_A 51 LGAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAK 115 (173)
T ss_dssp EEEECCSTTCSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHH
T ss_pred EEEeecCCCCcCccCcHHHHHHHHhhccccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHH
Confidence 4467777 877 788888 8776432 378999999742 344666666543
No 41
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=38.47 E-value=12 Score=29.55 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhhccc
Q psy8389 8 RQRLLATLERKFSGK 22 (156)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (156)
-+||...||.||||+
T Consensus 74 q~rLvrELEKKfsgk 88 (190)
T 3u5c_H 74 QTKLTRELEKKFQDR 88 (190)
T ss_dssp THHHHHHHHHTTCSE
T ss_pred HHHHHHHHHhccCCC
Confidence 468999999999997
No 42
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=34.85 E-value=34 Score=24.96 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=26.1
Q ss_pred CChHHHHHHHHhcC--CCeeEEEEeCCh--------hhHHHHHhhccc
Q psy8389 109 PNWDRVFKHLLDQK--KGKVTVFYCGPP--------QLARILRLKCDQ 146 (156)
Q Consensus 109 Pnw~~if~~v~~~~--~~~VGVF~CGP~--------~L~~~l~~~c~~ 146 (156)
|+|..+++.+.... ..+|+||-||.. ...+.+++.+..
T Consensus 72 ~~~~~fl~~l~~~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~ 119 (179)
T 1yob_A 72 ESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKD 119 (179)
T ss_dssp CCHHHHHHHHTTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence 66999999887532 379999999743 234566666543
No 43
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=32.30 E-value=26 Score=25.85 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=9.8
Q ss_pred CeeEEEEeCCh
Q psy8389 124 GKVTVFYCGPP 134 (156)
Q Consensus 124 ~~VGVF~CGP~ 134 (156)
..|+||.||+.
T Consensus 77 aavDvftCg~~ 87 (135)
T 2iii_A 77 ATVDVYTCGDP 87 (135)
T ss_dssp EEEEEEEESCH
T ss_pred EEEEEEccCCC
Confidence 58999999995
No 44
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=31.90 E-value=29 Score=25.27 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred Cccccc-cCCCC--hHHHHHHHHhcC--CCeeEEEEeCCh--------hhHHHHHhhccc
Q psy8389 100 LKTRTN-AGRPN--WDRVFKHLLDQK--KGKVTVFYCGPP--------QLARILRLKCDQ 146 (156)
Q Consensus 100 Lrs~Th-fGRPn--w~~if~~v~~~~--~~~VGVF~CGP~--------~L~~~l~~~c~~ 146 (156)
+-+.|+ .|+|. |..+++.+.... ..+|+||.||.. ...+.+++.+.+
T Consensus 51 ~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~ 110 (175)
T 1ag9_A 51 LGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEP 110 (175)
T ss_dssp EECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTT
T ss_pred EEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence 445774 57754 888888887532 478999999753 334566665544
No 45
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=29.41 E-value=23 Score=31.19 Aligned_cols=11 Identities=45% Similarity=1.056 Sum_probs=10.0
Q ss_pred CCeeEEEEeCC
Q psy8389 123 KGKVTVFYCGP 133 (156)
Q Consensus 123 ~~~VGVF~CGP 133 (156)
+.+|.+|+|||
T Consensus 23 ~~~v~~YvcGP 33 (462)
T 3tqo_A 23 SGKVKLYVCGM 33 (462)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeCCC
Confidence 46999999999
No 46
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=29.17 E-value=44 Score=25.29 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccccCCC--ChHHHHHHHHhcC-----CCeeEEEEeCC
Q psy8389 101 KTRTNAGRP--NWDRVFKHLLDQK-----KGKVTVFYCGP 133 (156)
Q Consensus 101 rs~ThfGRP--nw~~if~~v~~~~-----~~~VGVF~CGP 133 (156)
-+.|+.|+| ++..+++.+.... ..+++||-||.
T Consensus 74 g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG~Gd 113 (191)
T 1bvy_F 74 VTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGD 113 (191)
T ss_dssp EECCBTTBCCTTTHHHHHHHHTCCSSCCTTCCEEEEEEEC
T ss_pred EEeecCCCcCHHHHHHHHHHHhccchhhCCCEEEEEEccC
Confidence 346778887 8899999987642 25899999994
No 47
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=28.27 E-value=25 Score=26.25 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=9.7
Q ss_pred CeeEEEEeCCh
Q psy8389 124 GKVTVFYCGPP 134 (156)
Q Consensus 124 ~~VGVF~CGP~ 134 (156)
..|+||.||+.
T Consensus 88 AavDVftCg~~ 98 (142)
T 1vr7_A 88 AAIDLFTCGED 98 (142)
T ss_dssp EEEEEEEESTT
T ss_pred EEEEEEccCCC
Confidence 58999999985
No 48
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=26.20 E-value=36 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=24.9
Q ss_pred Cccccc-cCCC--ChHHHHHHHHhc--C--CCeeEEEEeCCh
Q psy8389 100 LKTRTN-AGRP--NWDRVFKHLLDQ--K--KGKVTVFYCGPP 134 (156)
Q Consensus 100 Lrs~Th-fGRP--nw~~if~~v~~~--~--~~~VGVF~CGP~ 134 (156)
+-+.|+ .|+| ++..+++.+... . ..+++||-||-.
T Consensus 52 ~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~avfg~G~~ 93 (147)
T 2hna_A 52 VISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSR 93 (147)
T ss_dssp EECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEEEESCCHH
T ss_pred EEECccCCCCCChhHHHHHHHHHhhccccCCCEEEEEecccC
Confidence 445777 7865 468889988754 2 258999998864
No 49
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=24.83 E-value=70 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=22.4
Q ss_pred CccccccCCccccccCCCChHHHHHHH-HhcCCCeeEEEEeC
Q psy8389 92 EKRDLITGLKTRTNAGRPNWDRVFKHL-LDQKKGKVTVFYCG 132 (156)
Q Consensus 92 ~~~d~iTgLrs~ThfGRPnw~~if~~v-~~~~~~~VGVF~CG 132 (156)
+..|++|||..+..| .+.++.. ....+..++|+++.
T Consensus 4 A~~D~LTgL~NR~~f-----~~~l~~~l~~~~~~~~~l~~iD 40 (179)
T 3tvk_A 4 SNMDVLTGLPGRRVL-----DESFDHQLRNAEPLNLYLMLLD 40 (179)
T ss_dssp TTSCTTTCSCBHHHH-----HHHHHHHHHTCTTSEEEEEEEE
T ss_pred cCcccccCchhHHHH-----HHHHHHHHHhcCCCCEEEEEEE
Confidence 468999999776543 4444433 33334678888753
No 50
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=21.10 E-value=62 Score=22.93 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=31.8
Q ss_pred CccccccCCC--ChHHHHHHHHhcCCCeeEEEEeCChh---hHHHHHhhccccc
Q psy8389 100 LKTRTNAGRP--NWDRVFKHLLDQKKGKVTVFYCGPPQ---LARILRLKCDQFG 148 (156)
Q Consensus 100 Lrs~ThfGRP--nw~~if~~v~~~~~~~VGVF~CGP~~---L~~~l~~~c~~~~ 148 (156)
+-++|++|++ .+..+++.+.......+.+|.||-.+ -.+.+++.|...+
T Consensus 82 lG~P~~~g~~~~~~~~fl~~~~~~~~k~~~~~t~gg~~~g~~~~~l~~~~~~~~ 135 (151)
T 3edo_A 82 IGSPVWSGYPATPIKTLLDQMKNYRGEVASFFTSAGTNHKAYVSHFNEWADGLN 135 (151)
T ss_dssp EEEEEETTEECTHHHHHHHHTTTCCSEEEEEEECSSCCHHHHHHHHHHHTTTSE
T ss_pred EEcceecccccHHHHHHHHhchhcCCEEEEEEEeCCCCCCcHHHHHHHHcCCCe
Confidence 4567888864 47788887754334567788887543 3466677776543
Done!