RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8389
(156 letters)
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 62.1 bits (150), Expect = 6e-13
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 89 SSQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQKKG-KVTVFYCGPPQLARILRLKCDQF 147
E++D+ITGLK +T GRPNWD FK + Q ++ VF CGP LA L +
Sbjct: 110 HHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISN 169
Query: 148 --------GFSFRKEVF 156
F F KE F
Sbjct: 170 SESGPRGVHFIFNKENF 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.009
Identities = 24/111 (21%), Positives = 31/111 (27%), Gaps = 60/111 (54%)
Query: 57 YTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFK 116
TN LP + + + SL N ++L+
Sbjct: 355 KTNSH---LPAGKQ---VEI---SLVNGA--------KNLV------------------- 378
Query: 117 HLLDQKKGKVTVFYCGPPQ----LARILR-LKC----DQF--GFSFRKEVF 156
V+ GPPQ L LR K DQ FS RK F
Sbjct: 379 ---------VS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Score = 30.4 bits (68), Expect = 0.26
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 90 SQEK---RDLITGLKTRTNAGRPNWDRVFKHLLD----------QKKGKVTVFYCGPPQL 136
SQE+ DL + A + W+R H D + G +
Sbjct: 1626 SQEQGMGMDLYK----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 137 ARI----LRLKCDQF--GFSFRKEVF 156
RI + + G +++F
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIF 1707
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.059
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 50 NHH-----GASGYTNESFCS-LPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTR 103
+HH G Y + S + F C + + P + S+E+ D I K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 104 TNAGRPNWDRVFKHLLDQKKGKVTVF 129
+ R+F LL +++ V F
Sbjct: 61 VSGTL----RLFWTLLSKQEEMVQKF 82
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5
snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB:
3e66_A 3e9o_A* 3e9p_A
Length = 260
Score = 30.1 bits (67), Expect = 0.28
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 44 KMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTR 103
+ K++H +T+E + ++ + + Y + L+ E +D+I G +
Sbjct: 198 PTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIK 257
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer,
disease mutation, MRN splicing, nucleus, phosphoprotein,
retinitis pigmentosa; 1.95A {Homo sapiens} SCOP:
c.55.3.14
Length = 257
Score = 26.9 bits (59), Expect = 2.5
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 44 KMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLK 101
K + + HH T+E + + K + Y + L+ E RD+I G++
Sbjct: 199 KTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGME 256
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 26.6 bits (59), Expect = 4.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 GRPNWDRVFKHLLDQKKGKVTVFYCGPP 134
G N + + HL ++ + V CGPP
Sbjct: 225 GFVNEEMIRDHLPPPEE-EPLVLMCGPP 251
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 25.7 bits (57), Expect = 6.9
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 81 LTNSPYPLS-SQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQKKGK 125
L + ++++ L+ L ++ RPN + + L KK
Sbjct: 231 LRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
3sle_A* 3svw_A* 3l4m_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A*
3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Length = 373
Score = 25.9 bits (57), Expect = 7.3
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 11/78 (14%)
Query: 50 NHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNS----PYPLSSQEKRDLITGLKTRTN 105
+ PE +L+ + L L+ L+T T
Sbjct: 292 LFYNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDALVAFLETLT- 350
Query: 106 AGRPNWDRVFKHLLDQKK 123
DR ++ LL++ +
Sbjct: 351 ------DRRYEPLLEESR 362
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,457,332
Number of extensions: 137899
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 10
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)