RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8389
(156 letters)
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 37.1 bits (86), Expect = 4e-04
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 24 LGGGKQNGGTGGSVDANIRGKMVVFKNHHGASGYTNE 60
G GT + G++ H + E
Sbjct: 243 WASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPE 279
>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4
[TaxId: 10843]}
Length = 417
Score = 30.9 bits (70), Expect = 0.055
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 24 LGGGKQNGGTGGSVDANIRGKMVVFKNHHGASGYTNE 60
G GT S G++ NH Y E
Sbjct: 234 WASGYDVDGTDQSSLGQFSGRVQQTFNHKVPRFYVPE 270
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 269
Score = 28.7 bits (64), Expect = 0.24
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 24 LGGGKQNGGTGGSVDANIRGKMVVFKNHHGASG 56
G G +GG D + +
Sbjct: 145 GSNGVLRGASGGHSDTAAGADLTIITAPLVRGR 177
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 439
Score = 27.9 bits (62), Expect = 0.47
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 85 PYPLSSQEKRDLITGLKTRTNAGRP--NWDRVFKHLLDQKKGKVTVFYCGP------PQL 136
P +SQ+K D ++GL T AG N L + FY PQ
Sbjct: 100 EIPKASQKKVDFVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQK 159
Query: 137 ARILRLKCDQFGFSFRK 153
L + + +
Sbjct: 160 GN-LLIYTEFGKMLVQP 175
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 26.4 bits (58), Expect = 1.6
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 24 LGGGKQNGGTGGSVDANIRGKMVVFKNHHGASG 56
+GG K G GGS D + +F A G
Sbjct: 148 VGGTKMMNGIGGSGDFARNAHLAIFVTKSIAKG 180
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 253
Score = 26.3 bits (58), Expect = 1.8
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 18/65 (27%)
Query: 44 KMVVFKNHHGASGYTNESFCS---------LPEDFKMGNIGVYCFSLTNSPYPLSSQEKR 94
+ K++H +T+E + + L E + N+ + L+ E +
Sbjct: 196 PTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA---------LTQTEIK 246
Query: 95 DLITG 99
D+I G
Sbjct: 247 DIILG 251
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 25.6 bits (55), Expect = 1.9
Identities = 13/80 (16%), Positives = 23/80 (28%)
Query: 62 FCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKHLLDQ 121
L + Y + + +K + G P F + ++
Sbjct: 27 ARQLRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPTKAFDFWSVFEK 86
Query: 122 KKGKVTVFYCGPPQLARILR 141
K V+ CGP L +R
Sbjct: 87 SKPAQHVYCCGPQALMDTVR 106
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 25.8 bits (56), Expect = 2.4
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 29 QNGGTGGSVDANIRGKMVVFKNHHGASGYTNESFCSLPEDFKMGNIGVYCFSLTNSPYPL 88
S D G ++++ G + + ++ K I + + N +
Sbjct: 186 GPEKYDKSCDMWSLG-VIMYILLCGYPPFYSNHGLAISPGMKT-RIRMGQYEFPNPEWSE 243
Query: 89 SSQEKRDLITGLKTRTNAGRPNWDRVFKH 117
S+E + LI L R H
Sbjct: 244 VSEEVKMLIRNLLKTEPTQRMTITEFMNH 272
>d1ux6a1 b.29.1.16 (A:937-1152) Thrombospondin C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 216
Score = 24.8 bits (54), Expect = 4.2
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 68 DFKMGNIGVYCFS 80
+ G +G++ FS
Sbjct: 188 TYAGGRLGLFVFS 200
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon
(Methanothermobacter thermautotrophicus) [TaxId:
145262]}
Length = 71
Score = 23.5 bits (51), Expect = 4.6
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 115 FKHLLDQKKGKVTVFYCG 132
++D+K+G ++ +CG
Sbjct: 10 ASRIVDEKRGIISFMWCG 27
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 24.7 bits (53), Expect = 5.2
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 62 FCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKH 117
F + + N+ + + + +S +D I L + R +H
Sbjct: 216 FLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 271
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 24.7 bits (53), Expect = 5.5
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 62 FCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKH 117
F +D + N+ +++ +S + S++ +D I L R + +H
Sbjct: 225 FGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 280
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 160
Score = 23.9 bits (51), Expect = 8.5
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 38 DANIRGKMVVFKNHHGASGYT---NESFCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKR 94
A+ + + + SL E + L++ E +
Sbjct: 72 TASDEYVFRASPLRNIELTAPYFHSGAVWSLEEAVAVMGTA-------QLGTELNNDEVK 124
Query: 95 DLITGLKTRT 104
++ LKT T
Sbjct: 125 SIVAFLKTLT 134
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 24.2 bits (52), Expect = 9.2
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 62 FCSLPEDFKMGNIGVYCFSLTNSPYPLSSQEKRDLITGLKTRTNAGRPNWDRVFKH 117
F + + NI ++ + S E D + L + R +H
Sbjct: 203 FLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,824
Number of extensions: 26401
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 21
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)