BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8390
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 15/65 (23%)
Query: 337 PDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKW 396
P+EP YC CN QV++G M+ CD+ CP EW+H CVG+ ++ PKGKW
Sbjct: 8 PNEPTYCLCN-------------QVSYGEMIGCDNDECPIEWFHFSCVGL--NHKPKGKW 52
Query: 397 YCPLC 401
YCP C
Sbjct: 53 YCPKC 57
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 15/69 (21%)
Query: 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGK 395
G +EP YC C QV++G M+ CD+ +CP EW+H CV + PKGK
Sbjct: 5 GSNEPTYC-------------LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT--TKPKGK 49
Query: 396 WYCPLCLEK 404
W+CP C+++
Sbjct: 50 WFCPRCVQE 58
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 69.3 bits (168), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN 390
MD P+EP YC C QV++G M+ CD+ +C EW+H CVG+
Sbjct: 1 MDMPVDPNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--T 45
Query: 391 PPKGKWYCPLCLEK 404
P+GKW+CP C ++
Sbjct: 46 KPRGKWFCPRCSQE 59
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 69.3 bits (168), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 15/65 (23%)
Query: 337 PDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKW 396
P+EP YC CN QV++G M+ CD++ CP EW+H CV + PKGKW
Sbjct: 8 PNEPTYCLCN-------------QVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKW 52
Query: 397 YCPLC 401
YCP C
Sbjct: 53 YCPKC 57
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 15/65 (23%)
Query: 337 PDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKW 396
P+EP YC CN QV++G M+ CD++ CP EW+H CV + PKGKW
Sbjct: 13 PNEPTYCLCN-------------QVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKW 57
Query: 397 YCPLC 401
YCP C
Sbjct: 58 YCPKC 62
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN 390
+D P+EP YC C QV++G M+ CD+ +C EW+H CVG+
Sbjct: 27 LDMPVDPNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--T 71
Query: 391 PPKGKWYCPLCLEKMAAS 408
P+GKW+CP C ++ S
Sbjct: 72 KPRGKWFCPRCSQESGPS 89
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 68.9 bits (167), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN 390
MD P+EP YC C QV++G M+ CD +C EW+H CVG+
Sbjct: 1 MDMPVDPNEPTYC-------------LCHQVSYGEMIGCDDPDCSIEWFHFACVGLT--T 45
Query: 391 PPKGKWYCPLCLEK 404
P+GKW+CP C ++
Sbjct: 46 KPRGKWFCPRCSQE 59
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN 390
MD P+EP YC C QV++G M+ CD+ +C EW+H CVG+
Sbjct: 1 MDMPVDPNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--T 45
Query: 391 PPKGKWYCPLCLEK 404
P+GKW+CP C ++
Sbjct: 46 KPRGKWFCPRCSQE 59
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 15/77 (19%)
Query: 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNP 391
D P+EP YC C QV++G M+ CD+ +C EW+H CVG+
Sbjct: 8 DMPVDPNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TK 52
Query: 392 PKGKWYCPLCLEKMAAS 408
P+GKW+CP C ++ S
Sbjct: 53 PRGKWFCPRCSQESGPS 69
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 356 IFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHYGG 415
C+QV++G MV CD+++CP EW+H CVG+ PKGKWYCP C M + H G
Sbjct: 9 CICNQVSYGEMVGCDNQDCPIEWFHYGCVGLT--EAPKGKWYCPQCTAAMKRRGSRHKSG 66
Query: 416 SS 417
S
Sbjct: 67 PS 68
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 65.1 bits (157), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 15/69 (21%)
Query: 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGK 395
G +EP YC C QV++G M+ CD+ +C EW+H CVG+ P+GK
Sbjct: 1 GSNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGK 45
Query: 396 WYCPLCLEK 404
W+CP C ++
Sbjct: 46 WFCPRCSQE 54
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 356 IFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHYGG 415
FC V++G MVACD+ CP+EW+H CVG+ PKGKWYC K AN
Sbjct: 29 CFCRNVSYGPMVACDNPACPFEWFHYGCVGL--KQAPKGKWYC----SKDCKEIANQRSK 82
Query: 416 SSRKHRK 422
S R+ R+
Sbjct: 83 SKRQKRR 89
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASK 409
M+ CD +C +WYH CVGI P + +W+CP C K+ K
Sbjct: 33 MIGCD--DCD-DWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCP 399
G +V CD K+CP + YH C+ + PP GKW CP
Sbjct: 25 GELVMCDKKDCP-KAYHLLCLNLT--QPPYGKWECP 57
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 3 YLEDYIELVEILPQELRDRFTEMRXXXXXXXXXXXXXXXKVNQFYQMAASMTPEQRQREY 62
YLE Y++ +E LP EL+ F R ++ A S++ E++
Sbjct: 5 YLEHYLDSIENLPFELQRNFQLXRDLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALL 64
Query: 63 ENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDI 101
+ + + Y K ++K+ LA Q E +K+ R+L+ D+
Sbjct: 65 KQIQEAYGKCKEFGDDKVQLAXQTYEXVDKHIRRLDTDL 103
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 335 YGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKG 394
Y D YC +Q G ++ CD+ CP YH C+ + P+G
Sbjct: 6 YETDHQDYCEVCQQG--------------GEIILCDT--CPRA-YHMVCLDPDMEKAPEG 48
Query: 395 KWYCPLC 401
KW CP C
Sbjct: 49 KWSCPHC 55
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 357 FCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405
FCS G ++ CD+ + YH +C+ PKG W CP C ++M
Sbjct: 7 FCSVCRKSGQLLMCDTCS---RVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLC 401
G ++ CD+ CP YH C+ A P G+W CP C
Sbjct: 19 GELLCCDT--CPSS-YHIHCLRPALYEVPDGEWQCPRC 53
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLC 401
G ++ CD+ CP YH C+ P G+W CP C
Sbjct: 19 GELLCCDT--CPSS-YHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 340 PRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPK-GKWYC 398
P YC C + + N + I C C +W+H CVGI +N ++C
Sbjct: 12 PVYCLCRQPYNVNHFMIECG--------LCQ------DWFHGSCVGIEEENAVDIDIYHC 57
Query: 399 PLCLEKMAAS--KANHYGGSS 417
P C S K H G SS
Sbjct: 58 PDCEAVFGPSIMKNWHSGPSS 78
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 357 FCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
FCS G ++ CD+ + YH +C+ PKG W CP C ++
Sbjct: 11 FCSVCRKSGQLLMCDTCS---RVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPK-GKWYCPLC 401
M+ CD+ C +W+H CVG+ + P ++CP C
Sbjct: 25 MIECDA--CK-DWFHGSCVGVEEEEAPDIDIYHCPNC 58
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQD 100
M+DS+ +N+ +IQE FNK +L+ D
Sbjct: 442 MVDSKHSMNILNRIQEHFNKKIERLDTD 469
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQD 100
M+DS+ +N+ +IQE FNK +L+ D
Sbjct: 391 MVDSKHSMNILNRIQEHFNKKIERLDTD 418
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQD 100
M+DS+ +N+ +IQE FNK +L+ D
Sbjct: 375 MVDSKHSMNILNRIQEHFNKKIERLDTD 402
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQD 100
M+DS+ +N+ +IQE FNK +L+ D
Sbjct: 412 MVDSKHSMNILNRIQEHFNKKIERLDTD 439
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403
M+ACD W+H C+GI + K+ C C+E
Sbjct: 31 MLACDGCGV---WHHTRCIGINNADALPSKFLCFRCIE 65
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 68 EYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKF 104
E KP +D+E +IN TQ+Q+F ++ +++ + K
Sbjct: 254 EVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKI 290
>pdb|3GJ8|B Chain B, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|D Chain D, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 92
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 356 IFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402
+ C+ G++ A S + P C+G+ P+G W C +CL
Sbjct: 26 VSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCL 72
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 50 AASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQ-EF-FNKYTRKLEQDIQKFKLE 107
AA +T ++Q+ E LQ+ K + D E+K+ + +Q +F FN T K + D+Q +
Sbjct: 8 AAVVT--EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ----D 61
Query: 108 LEADNSGITEILEKRVTDSQQKENQRSNLVAARSKMNTLRNLRSELPNATDKRSVASSAL 167
L +N +T +QK Q ++ A +M R++ SEL L
Sbjct: 62 LNGNNQSVT----------RQKMQQLEQMLTALDQMR--RSIVSELAGLLSAMEYVQKTL 109
Query: 168 TQE 170
T E
Sbjct: 110 TDE 112
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 50 AASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQ-EF-FNKYTRKLEQDIQKFKLE 107
AA +T ++Q+ E LQ+ K + D E+K+ + +Q +F FN T K + D+Q +
Sbjct: 8 AAVVT--EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ----D 61
Query: 108 LEADNSGITEILEKRVTDSQQKENQRSNLVAARSKMNTLRNLRSELPNATDKRSVASSAL 167
L +N +T +QK Q ++ A +M R++ SEL L
Sbjct: 62 LNGNNQSVT----------RQKMQQLEQMLTALDQMR--RSIVSELAGLLSAMEYVQKTL 109
Query: 168 TQE 170
T E
Sbjct: 110 TDE 112
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403
G ++ CD CP +H C+ P G W C CL+
Sbjct: 15 GELICCDG--CPRA-FHLACLSPPLREIPSGTWRCSSCLQ 51
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 15/46 (32%)
Query: 342 YCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIA 387
YC C Q H N + I C + C+ EW+H +CVGI+
Sbjct: 18 YCIC-RQPHNNRFMICCDR--------CE------EWFHGDCVGIS 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,386,852
Number of Sequences: 62578
Number of extensions: 289848
Number of successful extensions: 701
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 78
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)