Query psy8390
Match_columns 422
No_of_seqs 296 out of 1344
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:24:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5034 TNG2 Chromatin remodel 100.0 2.8E-31 6E-36 254.7 17.7 114 3-123 6-123 (271)
2 KOG1973|consensus 99.9 4.4E-27 9.5E-32 231.1 12.0 109 2-110 8-124 (274)
3 PF12998 ING: Inhibitor of gro 99.9 2.2E-26 4.7E-31 193.3 10.5 103 2-104 1-105 (105)
4 PF00628 PHD: PHD-finger; Int 98.8 1.1E-09 2.5E-14 81.1 0.9 47 354-403 1-50 (51)
5 smart00249 PHD PHD zinc finger 98.6 3.1E-08 6.7E-13 70.3 3.5 44 355-401 2-47 (47)
6 KOG1512|consensus 98.2 4.8E-07 1E-11 89.7 0.6 53 339-403 307-362 (381)
7 KOG1244|consensus 98.0 2.4E-06 5.3E-11 84.2 2.7 57 340-406 275-333 (336)
8 KOG0825|consensus 97.8 1.3E-05 2.8E-10 88.0 3.0 39 364-404 228-266 (1134)
9 KOG4299|consensus 97.8 1.1E-05 2.5E-10 86.8 2.1 39 364-405 266-306 (613)
10 KOG4323|consensus 97.3 0.00012 2.6E-09 77.3 2.6 41 364-407 183-227 (464)
11 KOG0383|consensus 96.9 0.00042 9.1E-09 76.6 2.1 41 362-405 55-95 (696)
12 KOG0956|consensus 96.9 0.00038 8.3E-09 76.0 1.7 40 363-405 19-58 (900)
13 KOG1245|consensus 96.7 0.00035 7.5E-09 82.6 -0.5 61 343-406 1099-1160(1404)
14 KOG0955|consensus 96.5 0.0019 4.2E-08 74.2 3.8 57 336-407 216-272 (1051)
15 KOG1632|consensus 96.2 0.0016 3.4E-08 67.0 1.1 53 340-406 60-115 (345)
16 KOG0954|consensus 96.2 0.0021 4.5E-08 70.9 1.9 37 363-404 285-321 (893)
17 PF13831 PHD_2: PHD-finger; PD 96.1 0.0014 3.1E-08 46.3 -0.0 33 365-402 3-36 (36)
18 COG5141 PHD zinc finger-contai 94.6 0.014 3E-07 62.2 1.3 36 364-404 208-243 (669)
19 KOG4443|consensus 94.0 0.023 5E-07 62.3 1.4 53 341-403 63-117 (694)
20 KOG1844|consensus 93.7 0.069 1.5E-06 56.7 4.3 54 337-406 83-137 (508)
21 KOG0957|consensus 92.8 0.045 9.8E-07 58.6 1.3 38 362-402 555-596 (707)
22 KOG0957|consensus 92.4 0.16 3.4E-06 54.6 4.5 51 341-404 121-179 (707)
23 KOG2752|consensus 90.7 0.17 3.7E-06 51.6 2.5 37 340-385 128-165 (345)
24 KOG1473|consensus 90.5 0.21 4.6E-06 58.0 3.4 38 362-402 352-389 (1414)
25 KOG1632|consensus 89.8 0.053 1.2E-06 55.9 -1.8 38 364-404 253-295 (345)
26 PF07227 DUF1423: Protein of u 86.4 0.67 1.5E-05 49.3 3.6 56 338-404 121-192 (446)
27 COG1382 GimC Prefoldin, chaper 86.3 23 0.0005 31.7 12.6 100 11-110 1-109 (119)
28 PF05010 TACC: Transforming ac 77.0 39 0.00084 32.8 11.5 46 61-109 126-171 (207)
29 PF13832 zf-HC5HC2H_2: PHD-zin 74.5 1.7 3.6E-05 36.9 1.4 22 362-384 64-85 (110)
30 PF13771 zf-HC5HC2H: PHD-like 69.7 2.9 6.4E-05 34.0 1.8 22 363-385 46-67 (90)
31 PF06160 EzrA: Septation ring 69.2 64 0.0014 35.5 12.4 112 8-119 110-228 (560)
32 PF11932 DUF3450: Protein of u 68.2 44 0.00095 32.6 9.9 73 16-88 87-159 (251)
33 PRK10869 recombination and rep 68.0 39 0.00084 37.1 10.4 37 5-41 285-324 (553)
34 PF01627 Hpt: Hpt domain; Int 67.6 56 0.0012 25.3 9.1 87 3-98 2-88 (90)
35 KOG0994|consensus 67.1 48 0.001 39.9 11.0 47 64-110 1563-1609(1758)
36 PF10497 zf-4CXXC_R1: Zinc-fin 65.3 3.1 6.8E-05 36.0 1.1 55 335-403 2-69 (105)
37 TIGR00634 recN DNA repair prot 64.9 45 0.00099 36.4 10.2 10 6-15 291-300 (563)
38 COG3937 Uncharacterized conser 64.7 83 0.0018 27.8 9.7 53 38-93 25-77 (108)
39 PF11793 FANCL_C: FANCL C-term 64.6 4.5 9.7E-05 32.4 1.8 52 354-406 4-66 (70)
40 KOG4443|consensus 64.6 2 4.4E-05 47.7 -0.2 48 354-404 20-71 (694)
41 KOG4628|consensus 64.6 5.8 0.00013 41.3 3.1 28 374-405 250-277 (348)
42 PF14446 Prok-RING_1: Prokaryo 64.2 3.9 8.4E-05 31.8 1.3 28 355-385 8-37 (54)
43 KOG3047|consensus 63.3 54 0.0012 30.0 8.5 42 68-109 102-143 (157)
44 COG5415 Predicted integral mem 62.7 3.7 8.1E-05 40.0 1.2 32 13-44 12-43 (251)
45 PRK15365 type III secretion sy 61.9 1.1E+02 0.0024 26.7 10.2 79 21-104 7-92 (107)
46 smart00502 BBC B-Box C-termina 61.9 92 0.002 25.8 12.1 25 79-103 73-97 (127)
47 PF12861 zf-Apc11: Anaphase-pr 61.4 5.5 0.00012 33.6 1.9 59 341-406 23-82 (85)
48 PF11690 DUF3287: Protein of u 60.1 32 0.0007 30.3 6.4 51 54-104 33-84 (109)
49 PF09755 DUF2046: Uncharacteri 59.7 2.2E+02 0.0048 29.5 13.4 44 66-109 109-159 (310)
50 PF04949 Transcrip_act: Transc 59.4 1.6E+02 0.0034 27.6 11.7 85 20-109 31-115 (159)
51 cd00632 Prefoldin_beta Prefold 59.2 1.1E+02 0.0024 25.9 11.3 95 6-110 3-102 (105)
52 COG3404 Methenyl tetrahydrofol 58.4 1.5E+02 0.0033 28.9 11.1 85 12-96 53-139 (208)
53 KOG1853|consensus 58.4 1.3E+02 0.0028 30.6 11.0 16 85-100 105-120 (333)
54 PF01765 RRF: Ribosome recycli 58.0 88 0.0019 28.8 9.4 35 74-108 130-164 (165)
55 KOG0971|consensus 57.9 1.6E+02 0.0035 34.8 12.9 43 73-115 320-362 (1243)
56 KOG2932|consensus 55.6 5.1 0.00011 41.2 0.8 44 340-406 90-134 (389)
57 COG1842 PspA Phage shock prote 55.6 2.1E+02 0.0046 28.1 14.0 37 72-108 100-136 (225)
58 PF04111 APG6: Autophagy prote 55.5 1.6E+02 0.0034 30.2 11.5 10 229-238 218-227 (314)
59 TIGR00496 frr ribosome recycli 54.8 97 0.0021 29.2 9.2 33 76-108 141-173 (176)
60 PF00038 Filament: Intermediat 54.7 2E+02 0.0044 28.4 12.1 78 15-92 164-252 (312)
61 PF09755 DUF2046: Uncharacteri 54.7 2.2E+02 0.0047 29.5 12.2 92 7-106 100-192 (310)
62 PF05781 MRVI1: MRVI1 protein; 52.6 1.5E+02 0.0032 32.9 11.3 28 83-110 290-317 (538)
63 KOG1829|consensus 52.6 3.6 7.9E-05 45.4 -0.8 57 340-409 501-564 (580)
64 PF04216 FdhE: Protein involve 52.4 6.8 0.00015 39.1 1.2 40 365-406 196-249 (290)
65 KOG4460|consensus 51.0 80 0.0017 35.2 8.8 35 3-37 571-606 (741)
66 PRK04778 septation ring format 50.2 2.3E+02 0.005 31.2 12.6 116 4-119 110-232 (569)
67 PRK03564 formate dehydrogenase 49.3 12 0.00025 38.5 2.3 40 365-406 211-263 (309)
68 TIGR01562 FdhE formate dehydro 48.7 12 0.00026 38.4 2.2 14 365-380 209-222 (305)
69 PF10046 BLOC1_2: Biogenesis o 48.6 1.7E+02 0.0036 24.8 9.5 29 75-103 70-98 (99)
70 COG2433 Uncharacterized conser 48.5 1.1E+02 0.0023 34.5 9.5 97 11-125 410-506 (652)
71 PRK09343 prefoldin subunit bet 47.6 2E+02 0.0043 25.3 12.1 95 12-108 3-108 (121)
72 PF08702 Fib_alpha: Fibrinogen 47.5 2.3E+02 0.0049 26.0 12.9 39 67-105 93-131 (146)
73 PHA02562 46 endonuclease subun 47.0 2.1E+02 0.0045 30.7 11.4 27 14-40 297-323 (562)
74 PF10146 zf-C4H2: Zinc finger- 46.9 2.9E+02 0.0064 27.2 11.5 8 397-404 210-217 (230)
75 PRK00083 frr ribosome recyclin 46.7 1.5E+02 0.0033 28.1 9.2 33 76-108 150-182 (185)
76 PF04012 PspA_IM30: PspA/IM30 46.6 2.6E+02 0.0057 26.4 13.9 37 3-42 13-49 (221)
77 PF03194 LUC7: LUC7 N_terminus 46.2 1E+02 0.0022 30.7 8.3 70 23-95 90-163 (254)
78 KOG4218|consensus 46.0 9.3 0.0002 39.9 1.0 47 354-403 17-75 (475)
79 KOG4552|consensus 45.8 2.3E+02 0.0051 28.0 10.3 87 20-110 12-99 (272)
80 PF09726 Macoilin: Transmembra 45.7 1.8E+02 0.0039 33.2 11.0 26 85-110 538-563 (697)
81 TIGR02338 gimC_beta prefoldin, 45.6 1.9E+02 0.0042 24.7 11.7 45 65-109 61-105 (110)
82 PF12678 zf-rbx1: RING-H2 zinc 45.4 5.7 0.00012 31.9 -0.5 51 341-402 21-73 (73)
83 smart00787 Spc7 Spc7 kinetocho 44.8 2.8E+02 0.0061 28.5 11.4 32 9-40 140-171 (312)
84 PF13341 RAG2_PHD: RAG2 PHD do 44.6 8.4 0.00018 31.6 0.3 34 365-400 29-67 (78)
85 cd07599 BAR_Rvs167p The Bin/Am 44.5 2.7E+02 0.0058 26.4 10.7 20 76-95 154-173 (216)
86 PF08317 Spc7: Spc7 kinetochor 44.0 3.5E+02 0.0075 27.6 12.0 33 9-41 145-177 (325)
87 PF04286 DUF445: Protein of un 43.6 3E+02 0.0065 27.3 11.3 26 81-107 269-294 (367)
88 COG0216 PrfA Protein chain rel 43.2 1.3E+02 0.0028 31.7 8.6 39 85-123 76-120 (363)
89 PF07139 DUF1387: Protein of u 42.7 2.9E+02 0.0062 28.6 10.9 52 56-107 200-258 (302)
90 PF06008 Laminin_I: Laminin Do 42.6 3E+02 0.0066 26.9 11.0 49 69-121 197-245 (264)
91 PF05130 FlgN: FlgN protein; 42.6 1.6E+02 0.0034 24.9 8.0 13 87-99 108-120 (143)
92 PF07888 CALCOCO1: Calcium bin 42.3 5E+02 0.011 29.0 13.4 54 64-118 418-471 (546)
93 PHA02562 46 endonuclease subun 41.8 4.3E+02 0.0093 28.3 12.8 26 64-89 221-246 (562)
94 KOG1655|consensus 41.5 66 0.0014 31.4 5.8 45 80-124 21-66 (218)
95 PF10498 IFT57: Intra-flagella 41.3 3.9E+02 0.0085 28.0 12.0 100 16-115 216-324 (359)
96 PF00261 Tropomyosin: Tropomyo 41.2 3.4E+02 0.0074 26.3 13.8 50 61-110 166-215 (237)
97 KOG2129|consensus 41.0 1.6E+02 0.0035 31.8 9.1 91 12-110 128-226 (552)
98 PF05502 Dynactin_p62: Dynacti 40.4 19 0.00042 39.0 2.4 27 349-375 23-56 (483)
99 PF06008 Laminin_I: Laminin Do 40.4 3.7E+02 0.0079 26.4 14.4 85 10-94 74-169 (264)
100 KOG1246|consensus 40.1 22 0.00047 41.3 2.9 37 365-404 168-204 (904)
101 PRK10244 anti-RssB factor; Pro 40.0 2.4E+02 0.0052 24.1 8.3 77 18-97 5-81 (88)
102 PF10158 LOH1CR12: Tumour supp 39.8 2.9E+02 0.0062 25.0 10.0 66 14-85 47-112 (131)
103 PF13851 GAS: Growth-arrest sp 39.7 3.5E+02 0.0075 25.9 13.5 85 17-102 21-110 (201)
104 PF07496 zf-CW: CW-type Zinc F 39.3 18 0.00039 27.1 1.4 30 366-400 3-34 (50)
105 PRK11637 AmiB activator; Provi 39.2 3.8E+02 0.0083 28.2 11.8 34 77-110 88-121 (428)
106 PF12889 DUF3829: Protein of u 39.1 95 0.0021 30.0 6.8 91 20-110 107-203 (276)
107 PRK05431 seryl-tRNA synthetase 38.9 2.7E+02 0.0059 29.6 10.6 31 90-120 78-108 (425)
108 KOG1512|consensus 38.5 8.5 0.00019 39.3 -0.6 36 364-402 277-315 (381)
109 KOG1493|consensus 38.0 16 0.00034 30.5 1.0 53 341-405 22-80 (84)
110 cd00520 RRF Ribosome recycling 37.8 2.3E+02 0.005 26.6 8.9 32 77-108 147-178 (179)
111 COG1579 Zn-ribbon protein, pos 37.8 3.3E+02 0.0071 27.2 10.2 93 15-127 2-97 (239)
112 PF04949 Transcrip_act: Transc 37.5 3.5E+02 0.0076 25.4 11.2 29 64-92 113-141 (159)
113 TIGR00414 serS seryl-tRNA synt 36.6 3.4E+02 0.0073 28.8 10.9 31 90-120 81-111 (418)
114 PLN02678 seryl-tRNA synthetase 36.1 2.3E+02 0.0049 30.7 9.5 34 90-123 83-116 (448)
115 TIGR02977 phageshock_pspA phag 36.0 4E+02 0.0087 25.5 11.6 116 4-125 15-139 (219)
116 PF05227 CHASE3: CHASE3 domain 35.8 2.5E+02 0.0055 23.6 8.3 44 3-47 40-83 (138)
117 PF13901 DUF4206: Domain of un 35.0 30 0.00065 33.0 2.5 51 341-406 143-200 (202)
118 PF10796 Anti-adapt_IraP: Sigm 35.0 2.8E+02 0.0062 23.5 8.8 77 18-97 5-81 (87)
119 PF15272 BBP1_C: Spindle pole 34.6 4.4E+02 0.0095 25.6 11.2 28 3-34 3-30 (196)
120 KOG4360|consensus 34.3 3.6E+02 0.0078 30.0 10.5 76 22-103 204-279 (596)
121 PF05384 DegS: Sensor protein 34.1 4E+02 0.0086 24.9 12.1 95 9-103 20-123 (159)
122 PRK14154 heat shock protein Gr 34.0 3.4E+02 0.0074 26.5 9.5 11 64-74 110-120 (208)
123 PF15469 Sec5: Exocyst complex 33.8 3.8E+02 0.0082 24.6 9.9 44 60-103 100-146 (182)
124 PF10146 zf-C4H2: Zinc finger- 33.7 2E+02 0.0042 28.4 8.0 38 9-46 11-48 (230)
125 KOG4603|consensus 33.5 2.7E+02 0.0058 26.8 8.4 23 86-108 175-197 (201)
126 PF15450 DUF4631: Domain of un 33.4 7.2E+02 0.016 27.7 13.3 80 28-110 349-430 (531)
127 KOG0796|consensus 33.3 4.4E+02 0.0096 27.4 10.6 83 2-95 79-162 (319)
128 COG0233 Frr Ribosome recycling 33.2 3.3E+02 0.0071 26.3 9.1 34 75-108 151-184 (187)
129 PRK04778 septation ring format 32.9 7E+02 0.015 27.5 13.2 8 150-157 436-443 (569)
130 PF13639 zf-RING_2: Ring finge 32.4 6.3 0.00014 28.0 -2.0 40 355-402 3-44 (44)
131 COG5034 TNG2 Chromatin remodel 32.0 81 0.0018 31.8 5.0 55 335-404 216-270 (271)
132 PRK11637 AmiB activator; Provi 31.6 5.1E+02 0.011 27.2 11.3 8 16-23 152-159 (428)
133 PF10737 GerPC: Spore germinat 31.4 1.4E+02 0.0029 28.5 6.2 46 5-52 89-140 (176)
134 KOG2626|consensus 30.6 61 0.0013 35.7 4.2 53 338-404 18-76 (544)
135 PF06160 EzrA: Septation ring 30.5 3.4E+02 0.0074 29.9 10.0 53 58-110 134-186 (560)
136 PF07649 C1_3: C1-like domain; 30.4 20 0.00043 23.9 0.3 28 354-384 2-30 (30)
137 KOG1666|consensus 29.7 4.6E+02 0.01 25.9 9.6 83 24-111 4-91 (220)
138 PHA02414 hypothetical protein 29.4 3.4E+02 0.0073 23.8 7.6 73 27-106 1-78 (111)
139 PF07342 DUF1474: Protein of u 29.2 3.9E+02 0.0084 23.3 8.4 40 69-110 48-87 (100)
140 COG3599 DivIVA Cell division i 29.2 5.5E+02 0.012 25.1 11.4 36 3-38 31-66 (212)
141 PF03107 C1_2: C1 domain; Int 29.2 55 0.0012 21.8 2.4 28 354-384 2-30 (30)
142 KOG1937|consensus 29.0 5.9E+02 0.013 28.0 10.9 81 4-107 327-411 (521)
143 KOG4796|consensus 28.6 6.2E+02 0.013 28.4 11.2 91 15-108 507-597 (604)
144 KOG4674|consensus 28.0 6E+02 0.013 32.5 12.1 103 8-110 635-756 (1822)
145 KOG1011|consensus 28.0 2.6E+02 0.0057 32.1 8.4 100 10-109 853-958 (1283)
146 PF15446 zf-PHD-like: PHD/FYVE 27.9 29 0.00064 32.9 1.1 22 363-387 14-35 (175)
147 PF02403 Seryl_tRNA_N: Seryl-t 27.9 3.6E+02 0.0079 22.6 10.9 27 90-116 79-105 (108)
148 PRK08032 fliD flagellar cappin 27.6 2.4E+02 0.0053 30.3 8.1 17 7-23 362-378 (462)
149 TIGR01069 mutS2 MutS2 family p 27.3 9.2E+02 0.02 27.9 13.0 35 12-46 492-527 (771)
150 KOG1473|consensus 26.9 20 0.00044 42.5 -0.1 47 355-405 431-480 (1414)
151 PF03148 Tektin: Tektin family 26.9 7.5E+02 0.016 25.9 13.1 105 6-111 255-371 (384)
152 smart00502 BBC B-Box C-termina 26.7 3.6E+02 0.0079 22.2 12.0 39 61-99 62-100 (127)
153 PF08580 KAR9: Yeast cortical 26.7 7.1E+02 0.015 28.5 11.8 44 61-104 99-142 (683)
154 KOG3133|consensus 26.6 5.4E+02 0.012 26.1 9.7 53 18-71 148-200 (267)
155 PF12128 DUF3584: Protein of u 26.4 1.1E+03 0.023 28.6 13.9 26 93-120 443-468 (1201)
156 KOG0412|consensus 26.3 7E+02 0.015 28.9 11.4 88 16-104 24-117 (773)
157 KOG1705|consensus 26.3 29 0.00062 29.9 0.7 49 355-406 30-80 (110)
158 PF11781 RRN7: RNA polymerase 26.3 44 0.00095 23.6 1.5 28 364-403 6-33 (36)
159 PRK04023 DNA polymerase II lar 26.3 45 0.00097 39.5 2.4 32 337-370 623-655 (1121)
160 PF08746 zf-RING-like: RING-li 26.0 18 0.0004 26.3 -0.5 32 367-401 12-43 (43)
161 KOG4299|consensus 26.0 50 0.0011 36.9 2.6 37 362-403 55-94 (613)
162 KOG4484|consensus 25.9 6E+02 0.013 24.4 9.7 43 4-48 36-78 (199)
163 PRK00409 recombination and DNA 25.8 9.7E+02 0.021 27.7 12.9 29 13-41 498-527 (782)
164 PF13949 ALIX_LYPXL_bnd: ALIX 25.8 6.1E+02 0.013 24.7 10.1 35 70-104 90-124 (296)
165 KOG0977|consensus 25.6 3.3E+02 0.0071 30.4 8.6 29 88-120 158-186 (546)
166 TIGR00570 cdk7 CDK-activating 25.3 4.8E+02 0.01 27.0 9.3 11 5-15 96-106 (309)
167 COG1579 Zn-ribbon protein, pos 25.2 6.9E+02 0.015 24.9 11.6 55 64-119 104-158 (239)
168 COG0576 GrpE Molecular chapero 25.2 5.8E+02 0.013 24.3 9.4 20 84-103 114-133 (193)
169 PF14362 DUF4407: Domain of un 25.2 6.9E+02 0.015 24.8 14.0 103 14-119 133-245 (301)
170 KOG0994|consensus 24.7 9.5E+02 0.021 29.8 12.3 39 70-108 1562-1600(1758)
171 PF05164 ZapA: Cell division p 24.7 3.6E+02 0.0078 21.4 8.5 66 32-108 23-88 (89)
172 cd07627 BAR_Vps5p The Bin/Amph 24.7 6.1E+02 0.013 24.1 12.7 31 76-109 155-185 (216)
173 PF03234 CDC37_N: Cdc37 N term 24.7 5.2E+02 0.011 24.6 8.8 103 6-110 43-156 (177)
174 TIGR02168 SMC_prok_B chromosom 24.6 9.4E+02 0.02 27.8 12.6 105 4-110 167-271 (1179)
175 COG1283 NptA Na+/phosphate sym 24.5 7.1E+02 0.015 27.8 10.9 31 65-95 426-456 (533)
176 TIGR01005 eps_transp_fam exopo 24.4 3.1E+02 0.0068 30.9 8.6 23 87-109 347-369 (754)
177 KOG2879|consensus 24.4 39 0.00084 34.4 1.3 26 379-406 262-287 (298)
178 KOG0823|consensus 24.4 49 0.0011 32.8 2.0 43 355-405 50-94 (230)
179 PF07200 Mod_r: Modifier of ru 24.3 5E+02 0.011 23.0 10.9 69 17-90 21-89 (150)
180 cd00162 RING RING-finger (Real 24.3 17 0.00037 24.4 -0.9 26 374-403 18-43 (45)
181 PF08822 DUF1804: Protein of u 24.3 6.1E+02 0.013 24.0 10.0 60 51-110 90-156 (165)
182 KOG1671|consensus 24.0 37 0.0008 33.0 1.0 19 379-399 154-173 (210)
183 KOG0964|consensus 23.9 4.9E+02 0.011 31.3 9.9 41 88-128 268-309 (1200)
184 TIGR03755 conj_TIGR03755 integ 23.6 99 0.0022 33.2 4.2 27 84-110 349-375 (418)
185 PF11932 DUF3450: Protein of u 23.6 6.9E+02 0.015 24.3 12.5 32 15-46 23-54 (251)
186 COG0497 RecN ATPase involved i 23.6 6.5E+02 0.014 28.2 10.5 24 87-110 337-360 (557)
187 PF09986 DUF2225: Uncharacteri 23.5 61 0.0013 31.2 2.5 10 394-403 47-56 (214)
188 KOG0612|consensus 23.2 6.6E+02 0.014 30.8 10.9 113 11-125 436-549 (1317)
189 KOG0956|consensus 23.0 63 0.0014 36.8 2.7 56 340-403 118-179 (900)
190 PRK14155 heat shock protein Gr 23.0 6.7E+02 0.015 24.4 9.5 100 12-118 16-118 (208)
191 COG5194 APC11 Component of SCF 22.8 22 0.00047 30.0 -0.6 27 374-405 54-80 (88)
192 TIGR00595 priA primosomal prot 22.7 59 0.0013 35.3 2.4 10 395-404 253-262 (505)
193 PF05816 TelA: Toxic anion res 22.7 5.9E+02 0.013 26.1 9.5 53 58-110 96-148 (333)
194 TIGR00606 rad50 rad50. This fa 22.6 6.2E+02 0.013 30.9 11.0 41 6-46 885-925 (1311)
195 TIGR00996 Mtu_fam_mce virulenc 22.5 7.3E+02 0.016 24.3 11.1 24 82-105 242-265 (291)
196 COG4755 Uncharacterized protei 22.2 6.2E+02 0.014 23.3 9.4 32 2-33 11-42 (151)
197 PLN02320 seryl-tRNA synthetase 22.2 6.6E+02 0.014 27.7 10.1 31 89-119 141-171 (502)
198 KOG4721|consensus 22.1 1E+03 0.022 27.6 11.4 90 25-114 373-471 (904)
199 COG1773 Rubredoxin [Energy pro 22.1 84 0.0018 24.6 2.5 10 394-403 35-44 (55)
200 smart00744 RINGv The RING-vari 22.1 22 0.00048 26.5 -0.7 28 373-402 20-49 (49)
201 PRK02224 chromosome segregatio 22.1 1.1E+03 0.024 27.0 12.4 105 3-121 469-573 (880)
202 COG0497 RecN ATPase involved i 22.1 6.5E+02 0.014 28.2 10.1 23 55-77 320-342 (557)
203 PF04961 FTCD_C: Formiminotran 22.0 4.2E+02 0.0091 25.0 7.7 75 16-90 52-128 (184)
204 KOG4515|consensus 22.0 7.5E+02 0.016 24.1 9.3 27 12-38 109-135 (217)
205 PF15619 Lebercilin: Ciliary p 21.9 7.1E+02 0.015 23.8 12.3 38 4-41 49-86 (194)
206 cd07656 F-BAR_srGAP The F-BAR 21.7 6.4E+02 0.014 24.8 9.2 118 8-128 14-135 (241)
207 TIGR00606 rad50 rad50. This fa 21.6 1.1E+03 0.024 28.7 12.9 32 79-110 1062-1093(1311)
208 PF08389 Xpo1: Exportin 1-like 21.5 4.3E+02 0.0092 22.3 7.2 32 3-34 27-58 (148)
209 PF10046 BLOC1_2: Biogenesis o 21.5 2.1E+02 0.0044 24.3 5.0 26 7-32 50-75 (99)
210 PF15446 zf-PHD-like: PHD/FYVE 21.4 79 0.0017 30.1 2.6 23 362-387 120-142 (175)
211 PF00645 zf-PARP: Poly(ADP-rib 21.2 25 0.00054 28.3 -0.6 11 377-387 39-49 (82)
212 PF08400 phage_tail_N: Prophag 21.2 2.4E+02 0.0053 25.7 5.7 36 4-39 86-123 (134)
213 PRK05802 hypothetical protein; 21.0 43 0.00094 34.0 0.9 39 338-385 10-48 (320)
214 PRK10328 DNA binding protein, 21.0 6.2E+02 0.014 23.0 8.2 29 18-46 4-33 (134)
215 PF11855 DUF3375: Protein of u 20.9 1.1E+03 0.023 25.6 12.6 103 4-106 180-312 (478)
216 COG1561 Uncharacterized stress 20.8 7.5E+02 0.016 25.5 9.6 25 84-108 175-199 (290)
217 PF04156 IncA: IncA protein; 20.8 6.6E+02 0.014 23.0 11.0 23 11-33 90-112 (191)
218 KOG0161|consensus 20.8 7.8E+02 0.017 31.8 11.4 66 63-128 999-1080(1930)
219 KOG2846|consensus 20.5 48 0.001 34.4 1.1 38 366-410 220-257 (328)
220 TIGR03185 DNA_S_dndD DNA sulfu 20.4 1.2E+03 0.026 26.0 13.4 102 4-108 403-511 (650)
221 PF11682 DUF3279: Protein of u 20.3 59 0.0013 29.4 1.5 26 337-362 94-120 (128)
222 PF12999 PRKCSH-like: Glucosid 20.1 3.9E+02 0.0085 25.5 7.0 40 68-107 136-175 (176)
223 KOG3579|consensus 20.0 82 0.0018 32.4 2.6 54 332-399 260-315 (352)
No 1
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.97 E-value=2.8e-31 Score=254.69 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC-hHHHHHHHHHHHHHHhhhhhchHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQ---MAASMT-PEQRQREYENLLQEYNKPMIDSEE 78 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~---~~~s~~-~ee~~~~~~~I~~~~~ka~elaDE 78 (422)
-|+||+|.|+++|.|..++|++|.++|+++.++++.+++.+. |++ +.+... .+..+.+++.|++.|-+++.+..+
T Consensus 6 ~Lnd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~s-i~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~~ 84 (271)
T COG5034 6 GLNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMIS-ILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQKE 84 (271)
T ss_pred HHHHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999998877 444 333443 444555668999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhh
Q psy8390 79 KINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123 (422)
Q Consensus 79 KV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEkrs 123 (422)
|+.|++.+--+++||+++||..+.+. ...++++.||.+.
T Consensus 85 ~~~l~d~~~~l~~Rh~~~~d~~~a~~------~h~~~~~~ie~~~ 123 (271)
T COG5034 85 KSDLADRAEKLLRRHRKLLDDRIAKR------PHEKVAARIENCH 123 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhh------hhhhhhhhhhhhh
Confidence 99999999999999999999888663 3355666776543
No 2
>KOG1973|consensus
Probab=99.94 E-value=4.4e-27 Score=231.15 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=91.2
Q ss_pred ccHHHHHHH----hhcChHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhh
Q psy8390 2 LYLEDYIEL----VEILPQELRDRFTEMRLLDLQ--SQNSLDQLQ-NKVNQFYQMAAS-MTPEQRQREYENLLQEYNKPM 73 (422)
Q Consensus 2 ~YLEDyLE~----IE~LP~ELqR~ltlIRELD~~--~q~~~~~ld-~~~~kfl~~~~s-~~~ee~~~~~~~I~~~~~ka~ 73 (422)
+|+++|++. +.+||.+++++|..|+++|.. ..+...+++ ..+..|.+...+ ...+.....+..|++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (274)
T KOG1973|consen 8 ILIEEVDDDIDMAVQNLPRNLQHNFDVIEDIDIFGRSENQKKELDLKVAVEYMSKGRSQLSKPQKDPLLEAIRSALRKCK 87 (274)
T ss_pred hhhhhcccccccccccCCccchhHHHHHhhhhccchhHHHHhhhhhhhhhccccccccccCccccchhHHHHHHHHhhhh
Confidence 467777777 999999999999999999994 466666666 566666665443 346778888999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 74 IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 74 elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
+++|||++++.++++++.+|+++||..+..|+.+++.
T Consensus 88 ~~~~ek~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~ 124 (274)
T KOG1973|consen 88 ELSDEKVQIAMQTVELIPKHIGRLETALKSFEVELEL 124 (274)
T ss_pred hhhhHHHHHHHHHHHhhHhhhcchhHHHHhcccchhh
Confidence 9999999999999999999999999999976665554
No 3
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=99.94 E-value=2.2e-26 Score=193.35 Aligned_cols=103 Identities=35% Similarity=0.648 Sum_probs=96.3
Q ss_pred ccHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhhhchHHH
Q psy8390 2 LYLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAAS--MTPEQRQREYENLLQEYNKPMIDSEEK 79 (422)
Q Consensus 2 ~YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s--~~~ee~~~~~~~I~~~~~ka~elaDEK 79 (422)
+|||||+|+|++||.||+|+|++|||||.++++.+.++++.+++|++..++ +.++.+...+.+|++.|.+++.++|||
T Consensus 1 ~~le~f~d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deK 80 (105)
T PF12998_consen 1 TYLEDFLDSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEK 80 (105)
T ss_dssp HHHHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999998877 788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 80 INLATQIQEFFNKYTRKLEQDIQKF 104 (422)
Q Consensus 80 V~LA~q~ydLVDrhiRrLD~dL~kf 104 (422)
|+||+++|++|++|++|||.++++|
T Consensus 81 v~lA~~~~d~v~~hi~rLD~dl~~f 105 (105)
T PF12998_consen 81 VALAQQAYDLVDRHIRRLDQDLKKF 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.81 E-value=1.1e-09 Score=81.13 Aligned_cols=47 Identities=49% Similarity=1.150 Sum_probs=35.3
Q ss_pred chhccccc-CCCceeeecCCCCCCcceecccCCcCCC--CCCCCceecccCcc
Q psy8390 354 YTIFCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPD--NPPKGKWYCPLCLE 403 (422)
Q Consensus 354 y~~~C~~~-~~g~MI~CD~c~C~~~WfH~~CVgi~~~--~~p~~~W~Cp~C~~ 403 (422)
||.+|++. +.++||.||. |. .|||..|++++.. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~--C~-~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDS--CN-RWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBST--TS-CEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCC--CC-hhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 35566563 3479999996 75 8999999999844 23346899999974
No 5
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512|consensus
Probab=98.16 E-value=4.8e-07 Score=89.65 Aligned_cols=53 Identities=30% Similarity=0.730 Sum_probs=44.3
Q ss_pred CCceeE-eccccccccchhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCceecc-cCcc
Q psy8390 339 EPRYCR-CNEQAHYNFYTIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCP-LCLE 403 (422)
Q Consensus 339 e~~yCi-C~~~~~~~~y~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp-~C~~ 403 (422)
-.|-|. |+ .|.+|+++.- .+|+.||. |+++ ||..|||+. ..|.|.|+|. .|..
T Consensus 307 Y~W~C~~C~-------lC~IC~~P~~E~E~~FCD~--CDRG-~HT~CVGL~--~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 307 YFWKCSSCE-------LCRICLGPVIESEHLFCDV--CDRG-PHTLCVGLQ--DLPRGEWICDMRCRE 362 (381)
T ss_pred cchhhcccH-------hhhccCCcccchheecccc--ccCC-CCccccccc--cccCccchhhhHHHH
Confidence 346688 88 7999988765 59999995 7777 999999999 8999999998 4543
No 7
>KOG1244|consensus
Probab=98.03 E-value=2.4e-06 Score=84.23 Aligned_cols=57 Identities=33% Similarity=0.869 Sum_probs=45.7
Q ss_pred CceeE-eccccccccchhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 340 PRYCR-CNEQAHYNFYTIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 340 ~~yCi-C~~~~~~~~y~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.|-|| |. ||.+|+..+. +.++.|| +|+++ ||+.|+.++..++|.|.|-|-.|....+
T Consensus 275 rwqcieck-------~csicgtsenddqllfcd--dcdrg-yhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 275 RWQCIECK-------YCSICGTSENDDQLLFCD--DCDRG-YHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred eeeeeecc-------eeccccCcCCCceeEeec--ccCCc-eeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 34566 66 7778865443 5889999 58777 9999999998889999999999987654
No 8
>KOG0825|consensus
Probab=97.77 E-value=1.3e-05 Score=88.01 Aligned_cols=39 Identities=33% Similarity=0.852 Sum_probs=34.4
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
..||.||. |....||.+|+.++..++|.+.|||+.|...
T Consensus 228 dVLLLCDs--CN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 228 DVLLLCDS--CNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred Hhheeecc--cccceeeccccCcccccccccceecCcchhh
Confidence 59999997 6667799999999877899999999999753
No 9
>KOG4299|consensus
Probab=97.76 E-value=1.1e-05 Score=86.83 Aligned_cols=39 Identities=38% Similarity=1.074 Sum_probs=32.4
Q ss_pred CceeeecCCCCCCcceecccCCcC--CCCCCCCceecccCcchh
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIA--PDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~--~~~~p~~~W~Cp~C~~~~ 405 (422)
.++|+||. ||.. ||+.|+.++ .+..|.|.|||+.|...+
T Consensus 266 ~~~i~CD~--Cp~s-FH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 266 NDIICCDG--CPRS-FHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred ccceeecC--CchH-HHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 46799997 7755 999999988 566889999999997543
No 10
>KOG4323|consensus
Probab=97.31 E-value=0.00012 Score=77.27 Aligned_cols=41 Identities=29% Similarity=0.796 Sum_probs=31.4
Q ss_pred CceeeecCCCCCCcceecccCCcCCC----CCCCCceecccCcchhcc
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPD----NPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~----~~p~~~W~Cp~C~~~~k~ 407 (422)
..||+|+. | +.|||-.|..+... .-+...|||..|....++
T Consensus 183 NrmlqC~~--C-~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 183 NRMLQCDK--C-RQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred ceeeeecc--c-ccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 49999996 7 59999999886522 124578999999876553
No 11
>KOG0383|consensus
Probab=96.91 E-value=0.00042 Score=76.63 Aligned_cols=41 Identities=32% Similarity=0.847 Sum_probs=34.9
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
++|..|+||. |+ .|||..|.+.+....|.+.|.|++|....
T Consensus 55 ~~g~~l~c~t--C~-~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 55 DGGELLWCDT--CP-ASFHASCLGPPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred CCCcEEEecc--cc-HHHHHHccCCCCCcCCccceeeeeeccCC
Confidence 6789999995 87 89999999998777887779999995443
No 12
>KOG0956|consensus
Probab=96.90 E-value=0.00038 Score=75.99 Aligned_cols=40 Identities=35% Similarity=0.821 Sum_probs=35.4
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
+..+|-||+-.|. .-.|-.|.||. ++|.|.|||..|....
T Consensus 19 eNPLVYCDG~nCs-VAVHQaCYGIv--qVPtGpWfCrKCesqe 58 (900)
T KOG0956|consen 19 ENPLVYCDGHNCS-VAVHQACYGIV--QVPTGPWFCRKCESQE 58 (900)
T ss_pred cCceeeecCCCce-eeeehhcceeE--ecCCCchhhhhhhhhh
Confidence 3599999999997 55999999999 9999999999998654
No 13
>KOG1245|consensus
Probab=96.71 E-value=0.00035 Score=82.59 Aligned_cols=61 Identities=25% Similarity=0.521 Sum_probs=46.3
Q ss_pred eEeccccccccchhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 343 CRCNEQAHYNFYTIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 343 CiC~~~~~~~~y~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|||-..-...-.|.+|..... ..|+.||. | ..|||+.|+.+....+|.+.|+||.|+....
T Consensus 1099 ~i~w~~s~~~~~c~~cr~k~~~~~m~lc~~--c-~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1099 EIKWDRSAVNALCKVCRRKKQDEKMLLCDE--C-LSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred HHhhccccchhhhhhhhhcccchhhhhhHh--h-hhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 444333334456777755444 49999996 7 4899999999888899999999999998764
No 14
>KOG0955|consensus
Probab=96.52 E-value=0.0019 Score=74.22 Aligned_cols=57 Identities=32% Similarity=0.705 Sum_probs=42.8
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
......+|||.+.. .-.....|.||+ |... +|..|+|++ .+|.|.|+|..|..+..+
T Consensus 216 ~~~D~~C~iC~~~~----------~~n~n~ivfCD~--Cnl~-VHq~Cygi~--~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGE----------CQNSNVIVFCDG--CNLA-VHQECYGIP--FIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cCCCccceeecccc----------cCCCceEEEcCC--Ccch-hhhhccCCC--CCCCCcEeehhhccCcCc
Confidence 34556889999541 112358999996 6544 999999988 899999999999876543
No 15
>KOG1632|consensus
Probab=96.24 E-value=0.0016 Score=66.95 Aligned_cols=53 Identities=38% Similarity=0.862 Sum_probs=41.0
Q ss_pred CceeEeccccccccchhcccccCCCceeeecCCCCCCcceeccc--CCcCCCCCC-CCceecccCcchhc
Q psy8390 340 PRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCEC--VGIAPDNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 340 ~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~C--Vgi~~~~~p-~~~W~Cp~C~~~~k 406 (422)
..||.|..+ ....++|+.||. |. .|||..| |+++..++| ...|+|..|.....
T Consensus 60 ~~~~~~~~~-----------~~p~~~~~~cd~--C~-~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 60 QRYCKCYKP-----------CDPDDLMEQCDL--CE-DWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred hchhhcccc-----------cCchhhhhcccc--cc-ccccccccccCchhhcCCccccccccccchhhh
Confidence 359999865 123349999995 85 9999999 999966665 57899999987653
No 16
>KOG0954|consensus
Probab=96.23 E-value=0.0021 Score=70.95 Aligned_cols=37 Identities=35% Similarity=0.690 Sum_probs=31.0
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
..+||.||+| . .-.|..|.||. ++|.+.|.|.-|.-.
T Consensus 285 ~neMVfCd~C--n-~cVHqaCyGIl--e~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 285 ANEMVFCDKC--N-ICVHQACYGIL--EVPEGPWLCRTCALG 321 (893)
T ss_pred cceeEEeccc--h-hHHHHhhhcee--ecCCCCeeehhcccc
Confidence 3599999985 3 23899999998 899999999999754
No 17
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.12 E-value=0.0014 Score=46.30 Aligned_cols=33 Identities=33% Similarity=0.933 Sum_probs=18.7
Q ss_pred ceeeecCCCCCCcceecccCCcCCCCCCCC-ceecccCc
Q psy8390 365 VMVACDSKNCPYEWYHCECVGIAPDNPPKG-KWYCPLCL 402 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~-~W~Cp~C~ 402 (422)
.||.|++ |. -++|..|-|+. ..|.+ .|+|..|+
T Consensus 3 ~ll~C~~--C~-v~VH~~CYGv~--~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDN--CN-VAVHQSCYGVS--EVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SS--S---EEEHHHHT-S--S--SS-----HHH-
T ss_pred ceEEeCC--CC-CcCChhhCCcc--cCCCCCcEECCcCC
Confidence 7999997 64 67999999998 66654 79999884
No 18
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.63 E-value=0.014 Score=62.21 Aligned_cols=36 Identities=36% Similarity=0.846 Sum_probs=30.7
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
.-+|.||+ |.+- .|-.|.||. -.|.|.|+|..|--.
T Consensus 208 naiVfCdg--C~i~-VHq~CYGI~--f~peG~WlCrkCi~~ 243 (669)
T COG5141 208 NAIVFCDG--CEIC-VHQSCYGIQ--FLPEGFWLCRKCIYG 243 (669)
T ss_pred ceEEEecC--cchh-hhhhcccce--ecCcchhhhhhhccc
Confidence 58999997 5544 899999999 899999999999643
No 19
>KOG4443|consensus
Probab=93.99 E-value=0.023 Score=62.31 Aligned_cols=53 Identities=28% Similarity=0.731 Sum_probs=39.5
Q ss_pred ceeE-eccccccccchhccccc-CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 341 RYCR-CNEQAHYNFYTIFCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 341 ~yCi-C~~~~~~~~y~~~C~~~-~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
|.|. |+ -|.+|+.. +-..+..|+. |. .-||.+|..+....++.+.|+|+.|..
T Consensus 63 WrC~~cr-------vCe~c~~~gD~~kf~~Ck~--cD-vsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 63 WRCPSCR-------VCEACGTTGDPKKFLLCKR--CD-VSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred cccCCce-------eeeeccccCCccccccccc--cc-ccccccccCCccccccCcccccHHHHh
Confidence 5566 66 46666532 2247778996 65 459999999999999999999997764
No 20
>KOG1844|consensus
Probab=93.69 E-value=0.069 Score=56.70 Aligned_cols=54 Identities=28% Similarity=0.672 Sum_probs=41.7
Q ss_pred CCCCceeEeccccccccchhcccccC-CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 337 PDEPRYCRCNEQAHYNFYTIFCSQVA-FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 337 ~~e~~yCiC~~~~~~~~y~~~C~~~~-~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.....-|+|+. ..+ +|.||+|+- |+ .|-|.-|+|+..... .+.|.|..|.....
T Consensus 83 ~~~~~~c~c~~------------~~~~~g~~i~c~~--c~-~Wqh~~C~g~~~~~~-p~~y~c~~c~~~~~ 137 (508)
T KOG1844|consen 83 AREISRCDCGL------------EDDMEGLMIQCDW--CG-RWQHKICCGSFKSTK-PDKYVCEICTPRNK 137 (508)
T ss_pred cCccccccccc------------ccCCCceeeCCcc--cC-cccCceeeeecCCCC-chhceeeeeccccc
Confidence 45667899994 335 789999995 75 899999999873223 57899999987543
No 21
>KOG0957|consensus
Probab=92.85 E-value=0.045 Score=58.62 Aligned_cols=38 Identities=29% Similarity=0.710 Sum_probs=30.4
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCC----ceecccCc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKG----KWYCPLCL 402 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~----~W~Cp~C~ 402 (422)
+...+++||- |. .-||++|+.++....|+. -|.|.+|.
T Consensus 555 dQHll~~CDt--C~-lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 555 DQHLLTQCDT--CH-LHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred hhHHHhhcch--hh-ceeeccccCCccccCcccccCcceeecccc
Confidence 3458999995 75 559999999998777753 39999994
No 22
>KOG0957|consensus
Probab=92.35 E-value=0.16 Score=54.60 Aligned_cols=51 Identities=31% Similarity=0.748 Sum_probs=34.9
Q ss_pred ceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCC-CCCC-------CCceecccCcch
Q psy8390 341 RYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAP-DNPP-------KGKWYCPLCLEK 404 (422)
Q Consensus 341 ~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~-~~~p-------~~~W~Cp~C~~~ 404 (422)
.+|+|-... ..+-|++|+||+ |.+. .|-+|.|+.. ..+| ...|||..|.-.
T Consensus 121 iCcVClg~r----------s~da~ei~qCd~--CGi~-VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 121 ICCVCLGQR----------SVDAGEILQCDK--CGIN-VHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred EEEEeecCc----------cccccceeeccc--cCce-ecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 788896321 235589999998 5444 8999999761 1222 257999988753
No 23
>KOG2752|consensus
Probab=90.66 E-value=0.17 Score=51.56 Aligned_cols=37 Identities=24% Similarity=0.744 Sum_probs=27.0
Q ss_pred CceeEeccccccccchhcccccCCCceeeecCCCCCCccee-cccCC
Q psy8390 340 PRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYH-CECVG 385 (422)
Q Consensus 340 ~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH-~~CVg 385 (422)
..||.|..++++ |+ ....|.|++|-. |+ +||| -.|+.
T Consensus 128 G~~C~Cd~~Ypd----p~--~~~e~~m~QC~i--CE-DWFHce~c~~ 165 (345)
T KOG2752|consen 128 GLFCKCDTPYPD----PV--RTEEGEMLQCVI--CE-DWFHCEGCMQ 165 (345)
T ss_pred ceeEEecCCCCC----cc--ccccceeeeEEe--cc-chhcccccCc
Confidence 489999987553 11 234579999994 86 9999 67765
No 24
>KOG1473|consensus
Probab=90.53 E-value=0.21 Score=57.98 Aligned_cols=38 Identities=32% Similarity=0.759 Sum_probs=34.1
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~ 402 (422)
+.|..+||++ ||.. ||+.||..+....|...|-|..|.
T Consensus 352 d~~~~lc~Et--~prv-vhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 352 DLGDLLCCET--CPRV-VHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred cccceeeccc--CCce-EEeeecCCccccCCCccchhhhhh
Confidence 6789999996 8865 999999999888999999999997
No 25
>KOG1632|consensus
Probab=89.84 E-value=0.053 Score=55.91 Aligned_cols=38 Identities=29% Similarity=0.763 Sum_probs=28.8
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCC-CC----ceecccCcch
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPP-KG----KWYCPLCLEK 404 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~----~W~Cp~C~~~ 404 (422)
.+||+|+. | ..|||..||.+.+...+ .. .|+||.|...
T Consensus 253 ~~~~~~~~--~-e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 253 KFEICCDL--C-ESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred HHHHHHHH--H-HHHhcccccccccchhhhhhhhccceecCceeec
Confidence 58999995 6 48999999998843332 23 4999999863
No 26
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=86.39 E-value=0.67 Score=49.34 Aligned_cols=56 Identities=29% Similarity=0.765 Sum_probs=36.7
Q ss_pred CCCceeE-eccccccccchhcccccCC----CceeeecCCCCCCcceecccC--------CcCCCC---CCCCceecccC
Q psy8390 338 DEPRYCR-CNEQAHYNFYTIFCSQVAF----GVMVACDSKNCPYEWYHCECV--------GIAPDN---PPKGKWYCPLC 401 (422)
Q Consensus 338 ~e~~yCi-C~~~~~~~~y~~~C~~~~~----g~MI~CD~c~C~~~WfH~~CV--------gi~~~~---~p~~~W~Cp~C 401 (422)
.+..||- |- |++|.+-++ -..|.||. |. .|-|..|- |+.... ..+..|+|..|
T Consensus 121 ~~~gFC~~C~--------C~iC~kfD~~~n~~~Wi~Cd~--Cg-H~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C 189 (446)
T PF07227_consen 121 SEPGFCRRCM--------CCICSKFDDNKNTCSWIGCDV--CG-HWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRAC 189 (446)
T ss_pred CCCCccccCC--------ccccCCcccCCCCeeEEeccC--CC-ceehhhhhcccccccCCccCCCCCccCceEEEccCC
Confidence 4456776 76 788866443 28899995 74 89999992 222111 12457999999
Q ss_pred cch
Q psy8390 402 LEK 404 (422)
Q Consensus 402 ~~~ 404 (422)
...
T Consensus 190 ~~~ 192 (446)
T PF07227_consen 190 GKT 192 (446)
T ss_pred CCh
Confidence 753
No 27
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.28 E-value=23 Score=31.65 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=67.7
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHhcCCChHH---HHHHHHHHHHHHhhhhhchHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQNSLDQLQNKV---N---QFYQMAASMTPEQ---RQREYENLLQEYNKPMIDSEEKIN 81 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~---~---kfl~~~~s~~~ee---~~~~~~~I~~~~~ka~elaDEKV~ 81 (422)
+++||.+++..+.....|-.+++.++-+..+.- + +-+......+.+. +.-...-|.....++..-.++++.
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E 80 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE 80 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence 368999999999999999888887775444322 1 1122222222221 211112355566778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 82 LATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 82 LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.-.-=...+++..++|+..+++++.+|..
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888766
No 28
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.98 E-value=39 Score=32.85 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
.+....+.|.....-+.+|+..|+.-++-|.+ ....++..|...|.
T Consensus 126 ~l~~~eqry~aLK~hAeekL~~ANeei~~v~~---~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 126 RLKKEEQRYQALKAHAEEKLEKANEEIAQVRS---KHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHH
Confidence 44566677888888899999999987766653 33444444444433
No 29
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=74.50 E-value=1.7 Score=36.91 Aligned_cols=22 Identities=23% Similarity=0.662 Sum_probs=18.8
Q ss_pred CCCceeeecCCCCCCcceecccC
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECV 384 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CV 384 (422)
..|..|.|...+|. .+||..|.
T Consensus 64 ~~G~~i~C~~~~C~-~~fH~~CA 85 (110)
T PF13832_consen 64 SGGACIKCSHPGCS-TAFHPTCA 85 (110)
T ss_pred CCceeEEcCCCCCC-cCCCHHHH
Confidence 36889999998895 78999994
No 30
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=69.72 E-value=2.9 Score=33.98 Aligned_cols=22 Identities=23% Similarity=0.697 Sum_probs=18.9
Q ss_pred CCceeeecCCCCCCcceecccCC
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVG 385 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVg 385 (422)
.|-.|.|....|. .+||+.|.-
T Consensus 46 ~Ga~i~C~~~~C~-~~fH~~CA~ 67 (90)
T PF13771_consen 46 GGACIGCSHPGCS-RSFHVPCAR 67 (90)
T ss_pred CCeEEEEeCCCCC-cEEChHHHc
Confidence 5899999998995 789999954
No 31
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.24 E-value=64 Score=35.50 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C----CChHHHHHHHHHHHHHHhhhhhchHH-HH
Q psy8390 8 IELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAA--S----MTPEQRQREYENLLQEYNKPMIDSEE-KI 80 (422)
Q Consensus 8 LE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~--s----~~~ee~~~~~~~I~~~~~ka~elaDE-KV 80 (422)
|+.++.-=..|+.-|+.+.+.+.+-...+.++.+..+.+-+..- + ..-+.-+..+..|...|.+..++-+. =.
T Consensus 110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 110 LDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 33333333334444444444444444444444444333332211 1 12444555667777777666666554 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 81 NLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
.=|..++.-++.++..|+..+.++-.-+..-...||++|
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql 228 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQL 228 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHH
Confidence 567778888888888888888877777766666777777
No 32
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.16 E-value=44 Score=32.64 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQE 88 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~yd 88 (422)
.+|.+.+..|.+....+.-+|.++-+..+.|+...--...++|..++..++..+..+.--.-||+.-.-.+|.
T Consensus 87 ~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 87 ASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 3333333333333344444444444444445442222234555555666666666655555555544444433
No 33
>PRK10869 recombination and repair protein; Provisional
Probab=67.98 E-value=39 Score=37.11 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 5 EDYIELVEILP---QELRDRFTEMRLLDLQSQNSLDQLQN 41 (422)
Q Consensus 5 EDyLE~IE~LP---~ELqR~ltlIRELD~~~q~~~~~ld~ 41 (422)
.+|++.++.=| .++..++..|+.|-.+|-...+++-+
T Consensus 285 ~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~ 324 (553)
T PRK10869 285 RHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQ 324 (553)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34555544445 44455555555555555543433333
No 34
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=67.64 E-value=56 Score=25.33 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=39.1
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINL 82 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~L 82 (422)
+|+.|++.+...-..|...+ +.++ ....+.+...++++-+..+..--+.-......|...++......- .+
T Consensus 2 ll~~f~~~~~~~~~~l~~~~---~~~~---~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~---~~ 72 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQAL---QALE---QEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEA---EE 72 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CSSH---HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHh---HhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccch---hH
Confidence 35566655444444444333 1111 334445556666665544443334333333444443333222221 45
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8390 83 ATQIQEFFNKYTRKLE 98 (422)
Q Consensus 83 A~q~ydLVDrhiRrLD 98 (422)
..++++.|...+.+|.
T Consensus 73 ~~~~~~~l~~~l~~l~ 88 (90)
T PF01627_consen 73 LEQLLDELEAMLEQLR 88 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555555555543
No 35
>KOG0994|consensus
Probab=67.05 E-value=48 Score=39.87 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 64 ~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.-.+....+++.+|+-...|+.+..-.+.-|+...+.|.+.+.+.++
T Consensus 1563 ~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~ 1609 (1758)
T KOG0994|consen 1563 GQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA 1609 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666666777666777776666555
No 36
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=65.29 E-value=3.1 Score=36.01 Aligned_cols=55 Identities=18% Similarity=0.583 Sum_probs=30.7
Q ss_pred CCCCCCceeE-eccccccccchhcccccCCCceeee----cCCCC---CCcceecccCCcC-----CCCCCCCceecccC
Q psy8390 335 YGPDEPRYCR-CNEQAHYNFYTIFCSQVAFGVMVAC----DSKNC---PYEWYHCECVGIA-----PDNPPKGKWYCPLC 401 (422)
Q Consensus 335 ~d~~e~~yCi-C~~~~~~~~y~~~C~~~~~g~MI~C----D~c~C---~~~WfH~~CVgi~-----~~~~p~~~W~Cp~C 401 (422)
+|+.....|. |++ ...+..+.| .+..| ... |=..|+-.- .+.....+|.||.|
T Consensus 2 yd~~~g~~CHqCrq-------------Kt~~~~~~C~~~~~~~~C~~~~~~-fC~~CL~~ryge~~~ev~~~~~W~CP~C 67 (105)
T PF10497_consen 2 YDSVNGKTCHQCRQ-------------KTLDFKTICTGHWKNSSCRGCRGK-FCGGCLRNRYGENVEEVLEDPNWKCPKC 67 (105)
T ss_pred ccCCCCCCchhhcC-------------CCCCCceEcCCCCCCCCCccCcce-ehHhHHHHHHhhhHHHHhcCCceECCCC
Confidence 4566667787 884 333444556 22234 433 556774421 11234678999998
Q ss_pred cc
Q psy8390 402 LE 403 (422)
Q Consensus 402 ~~ 403 (422)
+.
T Consensus 68 rg 69 (105)
T PF10497_consen 68 RG 69 (105)
T ss_pred CC
Confidence 75
No 37
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.86 E-value=45 Score=36.42 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=3.9
Q ss_pred HHHHHhhcCh
Q psy8390 6 DYIELVEILP 15 (422)
Q Consensus 6 DyLE~IE~LP 15 (422)
+|++.++.=|
T Consensus 291 ~~~~~l~~dp 300 (563)
T TIGR00634 291 NYLDELEFDP 300 (563)
T ss_pred HHHHhCCCCH
Confidence 3334443334
No 38
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=64.74 E-value=83 Score=27.78 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy8390 38 QLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKY 93 (422)
Q Consensus 38 ~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrh 93 (422)
.+.+.++.+.+ -+.+..++..+.+..|.+..+......++| +-.+|-++++..
T Consensus 25 k~~klvDelVk-kGeln~eEak~~vddl~~q~k~~~~e~e~K--~~r~i~~ml~~~ 77 (108)
T COG3937 25 KVQKLVDELVK-KGELNAEEAKRFVDDLLRQAKEAQGELEEK--IPRKIEEMLSDL 77 (108)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhhhHHHh--hhHHHHHHHhhc
Confidence 33444444444 245667777777788888888888888888 556666665543
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=64.64 E-value=4.5 Score=32.38 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=19.9
Q ss_pred chhcccccC--CC--ceeeecCCCCCCcceecccCC-----cCCCC--CCCCceecccCcchhc
Q psy8390 354 YTIFCSQVA--FG--VMVACDSKNCPYEWYHCECVG-----IAPDN--PPKGKWYCPLCLEKMA 406 (422)
Q Consensus 354 y~~~C~~~~--~g--~MI~CD~c~C~~~WfH~~CVg-----i~~~~--~p~~~W~Cp~C~~~~k 406 (422)
.|.+|.... .+ .-+.|++..|... ||..|+- .+... .-.-.+-||.|.....
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 355664432 22 5688998888644 9999975 11001 1123477999987653
No 40
>KOG4443|consensus
Probab=64.64 E-value=2 Score=47.72 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=31.2
Q ss_pred chhcccc---cCCCceeeecCCCCCCcceecccCCcCCCCC-CCCceecccCcch
Q psy8390 354 YTIFCSQ---VAFGVMVACDSKNCPYEWYHCECVGIAPDNP-PKGKWYCPLCLEK 404 (422)
Q Consensus 354 y~~~C~~---~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~-p~~~W~Cp~C~~~ 404 (422)
.|++|+. ...|.|+.|.. |- .-||..||.+-...+ -.+-|.||.|+.-
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~--c~-~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSD--CG-QKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhccccccccCcchhhhh--hc-ccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 3666633 23368999996 63 569999999542222 2344999998753
No 41
>KOG4628|consensus
Probab=64.59 E-value=5.8 Score=41.31 Aligned_cols=28 Identities=21% Similarity=0.776 Sum_probs=18.5
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|.+. ||..||.+= -.. ..-+||-|....
T Consensus 250 C~H~-FH~~CIDpW--L~~-~r~~CPvCK~di 277 (348)
T KOG4628|consen 250 CSHK-FHVNCIDPW--LTQ-TRTFCPVCKRDI 277 (348)
T ss_pred CCCc-hhhccchhh--Hhh-cCccCCCCCCcC
Confidence 4456 999999753 111 245899998754
No 42
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=64.23 E-value=3.9 Score=31.75 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=20.6
Q ss_pred hhcccccC--CCceeeecCCCCCCcceecccCC
Q psy8390 355 TIFCSQVA--FGVMVACDSKNCPYEWYHCECVG 385 (422)
Q Consensus 355 ~~~C~~~~--~g~MI~CD~c~C~~~WfH~~CVg 385 (422)
|++|+..- .++.|.|.. |. .=||..|..
T Consensus 8 C~~Cg~~~~~~dDiVvCp~--Cg-apyHR~C~~ 37 (54)
T PF14446_consen 8 CPVCGKKFKDGDDIVVCPE--CG-APYHRDCWE 37 (54)
T ss_pred ChhhCCcccCCCCEEECCC--CC-CcccHHHHh
Confidence 66776654 679999996 53 339999983
No 43
>KOG3047|consensus
Probab=63.29 E-value=54 Score=30.03 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 68 EYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 68 ~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
.+..++...|.|+.+-..+.+-+.+-.-+|..+|.-|-.-|+
T Consensus 102 kLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ihMLLagl~ 143 (157)
T KOG3047|consen 102 KLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIHMLLAGLD 143 (157)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 567788899999999999999999988888888876655553
No 44
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=62.65 E-value=3.7 Score=40.05 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 13 ILPQELRDRFTEMRLLDLQSQNSLDQLQNKVN 44 (422)
Q Consensus 13 ~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~ 44 (422)
.+-.||.|.=..|.++|....+++..+++..-
T Consensus 12 ~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~ 43 (251)
T COG5415 12 KYTADLSRLESQIHQLDVALKKSQSILSQWQS 43 (251)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568888889999999988777776666443
No 45
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=61.95 E-value=1.1e+02 Score=26.73 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHH
Q psy8390 21 RFTEMRLLDLQSQNSLDQLQ------NKVNQFYQMAASMTPEQRQREYENLLQEYNKPM-IDSEEKINLATQIQEFFNKY 93 (422)
Q Consensus 21 ~ltlIRELD~~~q~~~~~ld------~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~-elaDEKV~LA~q~ydLVDrh 93 (422)
-|+++++|.-+|..+...++ +.+..++..--..++..|+ .+..+...|-.-. .+..||.++... |...
T Consensus 7 ~~~~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE-~l~rLd~aFP~G~~~~~qE~~k~m~~----i~~~ 81 (107)
T PRK15365 7 AFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRE-TESILHNLFPQGVAGVNQEAEKDLKK----IVSL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCcchhhHHhHHHHHHHHH----HHHH
Confidence 58899999999986665444 3444445432223333332 3345555554433 446666655444 4477
Q ss_pred HHHHHHHHHHH
Q psy8390 94 TRKLEQDIQKF 104 (422)
Q Consensus 94 iRrLD~dL~kf 104 (422)
-++|+..|+.+
T Consensus 82 FKQLEt~LKnl 92 (107)
T PRK15365 82 FKQLEVRLKQL 92 (107)
T ss_pred HHHHHHHHHhc
Confidence 78888887664
No 46
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=61.86 E-value=92 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 79 KINLATQIQEFFNKYTRKLEQDIQK 103 (422)
Q Consensus 79 KV~LA~q~ydLVDrhiRrLD~dL~k 103 (422)
|......-.+-+..++.+|..-+.-
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~ 97 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444433333
No 47
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=61.41 E-value=5.5 Score=33.58 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=35.3
Q ss_pred ceeEeccccccccchhcccccCCC-ceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 341 RYCRCNEQAHYNFYTIFCSQVAFG-VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 341 ~yCiC~~~~~~~~y~~~C~~~~~g-~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.+=||+.+.+ --|+.|.-+.++ .++.+. |.+. ||+.|+--=. ..+..+=.||.|+..-+
T Consensus 23 ~CgICr~~fd--g~Cp~Ck~Pgd~Cplv~g~---C~H~-FH~hCI~kWl-~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 23 VCGICRMPFD--GCCPDCKFPGDDCPLVWGK---CSHN-FHMHCILKWL-STQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeEecccc--cCCCCccCCCCCCceeecc---CccH-HHHHHHHHHH-ccccCCCCCCCcCCeee
Confidence 4446997632 237778555444 555554 7655 9999976221 12233459999987543
No 48
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=60.10 E-value=32 Score=30.31 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy8390 54 TPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEF-FNKYTRKLEQDIQKF 104 (422)
Q Consensus 54 ~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydL-VDrhiRrLD~dL~kf 104 (422)
.+.++++.+.=|...-.+-+.+.+|+-.|.-++.+| |+|.++.|+++-..-
T Consensus 33 ~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~p~~W 84 (109)
T PF11690_consen 33 PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESHPFDW 84 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 445555666667777777788999999999999998 999999999887654
No 49
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=59.68 E-value=2.2e+02 Score=29.49 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHhhhhhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q psy8390 66 LQEYNKPMIDSEEKINLATQIQE-------FFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 66 ~~~~~ka~elaDEKV~LA~q~yd-------LVDrhiRrLD~dL~kf~~ELE 109 (422)
.....++.++.+||++|.+++-. -+-+.|.+|..+......+|+
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le 159 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE 159 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34557888999999999998864 333555555555555555554
No 50
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.36 E-value=1.6e+02 Score=27.64 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 20 DRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQ 99 (422)
Q Consensus 20 R~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~ 99 (422)
--++.++..|...+.-.-++.+++..-+. ..++....+..|++++.-...=-.--|...-.-.|.|++.++.|-+
T Consensus 31 sals~f~AkEeeIErkKmeVrekVq~~Lg-----rveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 31 SALSAFRAKEEEIERKKMEVREKVQAQLG-----RVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35778888888888888888888877665 2355666778888888755444455577777778888888888887
Q ss_pred HHHHHHHHHh
Q psy8390 100 DIQKFKLELE 109 (422)
Q Consensus 100 dL~kf~~ELE 109 (422)
-..+-+.|+.
T Consensus 106 ~cqKKEkEyk 115 (159)
T PF04949_consen 106 SCQKKEKEYK 115 (159)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 51
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.17 E-value=1.1e+02 Score=25.90 Aligned_cols=95 Identities=11% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-----HHHHHHHhhhhhchHHHH
Q psy8390 6 DYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREY-----ENLLQEYNKPMIDSEEKI 80 (422)
Q Consensus 6 DyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~-----~~I~~~~~ka~elaDEKV 80 (422)
+.+..+..|=.+++.....++.|+.+..+...-+++... .+++.+ .| -=|......+...-++++
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~--------l~~d~~--vy~~VG~vfv~~~~~ea~~~Le~~~ 72 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEK--------LADDAE--VYKLVGNVLVKQEKEEARTELKERL 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCcch--HHHHhhhHHhhccHHHHHHHHHHHH
Confidence 344455555556666666666666666544433332211 111111 11 124455566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 81 NLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.....-.+-+++.+..|+..+..++.+|..
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888888888888777753
No 52
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=58.38 E-value=1.5e+02 Score=28.89 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=61.2
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q psy8390 12 EILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA--ASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEF 89 (422)
Q Consensus 12 E~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~--~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydL 89 (422)
++.-.|..++|.+++++-..+..+.++=.+..+.+...- ++...+++..+-+.|+..++.+.+.--+=+.++-++.++
T Consensus 53 ~~~d~e~k~i~~~~~~ik~~l~~lidkD~eAf~~im~AyKlPK~teEEK~~R~~~lQ~Alk~Aa~vP~~ia~~~~~~l~l 132 (208)
T COG3404 53 EDYDDEMKEILEELQKIKAELLALIDKDEEAFNLIMAAYKLPKSTEEEKAARRKALQNALKEAAKVPLDIATLMVDLLEL 132 (208)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 445567777899999998888888777666666665432 344567777788899999999988877766666666666
Q ss_pred HHHHHHH
Q psy8390 90 FNKYTRK 96 (422)
Q Consensus 90 VDrhiRr 96 (422)
+++-+..
T Consensus 133 ~e~l~~~ 139 (208)
T COG3404 133 LEKLVEK 139 (208)
T ss_pred HHHHHHh
Confidence 6655443
No 53
>KOG1853|consensus
Probab=58.37 E-value=1.3e+02 Score=30.58 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8390 85 QIQEFFNKYTRKLEQD 100 (422)
Q Consensus 85 q~ydLVDrhiRrLD~d 100 (422)
-+.|-+.+|||.|++-
T Consensus 105 aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 105 AIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556667777777764
No 54
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=57.98 E-value=88 Score=28.80 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=27.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 74 IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 74 elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-.-|+.-.+-.++..+.++|+.++|.-++.=+.||
T Consensus 130 ~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 164 (165)
T PF01765_consen 130 ISEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKEL 164 (165)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566777888999999999999999988766654
No 55
>KOG0971|consensus
Probab=57.91 E-value=1.6e+02 Score=34.81 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=37.9
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy8390 73 MIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGI 115 (422)
Q Consensus 73 ~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GI 115 (422)
++.++|+..--++=++.+.-.+..|+.||+-|+.|++....+.
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5788999999999999999999999999999999998865554
No 56
>KOG2932|consensus
Probab=55.62 E-value=5.1 Score=41.25 Aligned_cols=44 Identities=25% Similarity=0.742 Sum_probs=27.4
Q ss_pred CceeE-eccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 340 PRYCR-CNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 340 ~~yCi-C~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.-||. |..| -.-+|.||-|+- . |=+.|.-.. .+-.||.|.....
T Consensus 90 VHfCd~Cd~P-----------I~IYGRmIPCkH-----v-FCl~CAr~~------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFP-----------IAIYGRMIPCKH-----V-FCLECARSD------SDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCc-----------ceeeecccccch-----h-hhhhhhhcC------ccccCcCcccHHH
Confidence 45676 7754 346799999883 2 556665443 1457888876543
No 57
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=55.59 E-value=2.1e+02 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=19.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 72 PMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 72 a~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
....-+.=+..+....+-|.+-+.+|+..|..|+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555556666666655555544
No 58
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=55.46 E-value=1.6e+02 Score=30.22 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=2.7
Q ss_pred hHHHhhcCCC
Q psy8390 229 SYEAIHGGAG 238 (422)
Q Consensus 229 syea~~~~~~ 238 (422)
.|+...++++
T Consensus 218 ~~~ly~~~~~ 227 (314)
T PF04111_consen 218 TYPLYSSGSF 227 (314)
T ss_dssp EEESS--SS-
T ss_pred EEecccCCCc
Confidence 3444433333
No 59
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=54.85 E-value=97 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-|+--.+-.++..|.|+|+.++|.-++.-+.||
T Consensus 141 eD~~k~~~~~iQkltd~~i~~id~~~~~Kekei 173 (176)
T TIGR00496 141 EDEERRLQEEIQKLTDEYIKKIDEILKDKEKEL 173 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677888999999999999999998877775
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.68 E-value=2e+02 Score=28.43 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC----------ChHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q psy8390 15 PQELRDRFTEMR-LLDLQSQNSLDQLQNKVNQFYQMAASM----------TPEQRQREYENLLQEYNKPMIDSEEKINLA 83 (422)
Q Consensus 15 P~ELqR~ltlIR-ELD~~~q~~~~~ld~~~~kfl~~~~s~----------~~ee~~~~~~~I~~~~~ka~elaDEKV~LA 83 (422)
..+|...+.+|| +.|..+.....+++...+.=+...... ...+....-..|...-.++..+...+-.|-
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 456777777776 456666655555555433322221110 012222233456666677777777888888
Q ss_pred HHHHHHHHH
Q psy8390 84 TQIQEFFNK 92 (422)
Q Consensus 84 ~q~ydLVDr 92 (422)
.++.++-..
T Consensus 244 ~~l~~le~~ 252 (312)
T PF00038_consen 244 RQLRELEQR 252 (312)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 888777533
No 61
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=54.67 E-value=2.2e+02 Score=29.55 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy8390 7 YIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQN-KVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQ 85 (422)
Q Consensus 7 yLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~-~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q 85 (422)
|..-=|.|-+.|.|.|..||.=-..+.+.+..-++ .+.++...+.. +-.++.........+..|||.|=+.
T Consensus 100 ~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~--------Le~e~~~~q~~le~Lr~EKVdlEn~ 171 (310)
T PF09755_consen 100 YEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIER--------LEKEKSAKQEELERLRREKVDLENT 171 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHhHHHH
Confidence 33333556667777777666544434333332221 23333322111 1111222233445788899999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8390 86 IQEFFNKYTRKLEQDIQKFKL 106 (422)
Q Consensus 86 ~ydLVDrhiRrLD~dL~kf~~ 106 (422)
+-.=-+--+.+|...+.++..
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 755555555555555555443
No 62
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=52.61 E-value=1.5e+02 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 83 ATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 83 A~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
...+.+++..|+..|..-+.|...||+.
T Consensus 290 ~SkAvevM~qhvenLkr~~~kehaeL~E 317 (538)
T PF05781_consen 290 VSKAVEVMIQHVENLKRMYEKEHAELEE 317 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999998888777766643
No 63
>KOG1829|consensus
Probab=52.60 E-value=3.6 Score=45.42 Aligned_cols=57 Identities=21% Similarity=0.633 Sum_probs=36.6
Q ss_pred CceeE-eccccccccchhcccccCC------CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcccc
Q psy8390 340 PRYCR-CNEQAHYNFYTIFCSQVAF------GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASK 409 (422)
Q Consensus 340 ~~yCi-C~~~~~~~~y~~~C~~~~~------g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r~ 409 (422)
..-|. |... .|.|..|...+- ..-.-|+. | ..|||-.|+... .+. ||.|.+..+++.
T Consensus 501 V~~C~lC~~~---gfiCe~Cq~~~iiyPF~~~~~~rC~~--C-~avfH~~C~~r~---s~~----CPrC~R~q~r~~ 564 (580)
T KOG1829|consen 501 VKECDLCTGK---GFICELCQHNDIIYPFETRNTRRCST--C-LAVFHKKCLRRK---SPC----CPRCERRQKRAE 564 (580)
T ss_pred hhhchhhccC---eeeeeeccCCCcccccccccceeHHH--H-HHHHHHHHHhcc---CCC----CCchHHHHHHhh
Confidence 34476 7642 466888833221 12367885 7 489999999765 222 999998776543
No 64
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=52.39 E-value=6.8 Score=39.12 Aligned_cols=40 Identities=20% Similarity=0.451 Sum_probs=19.1
Q ss_pred ceeeecCCCCCCcceec--ccCC---cCC--------CCCC-CCceecccCcchhc
Q psy8390 365 VMVACDSKNCPYEWYHC--ECVG---IAP--------DNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~--~CVg---i~~--------~~~p-~~~W~Cp~C~~~~k 406 (422)
.++.|.. |..+|.+. .|.. -.. +..+ ..-..|..|..-.|
T Consensus 196 R~L~Cs~--C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK 249 (290)
T PF04216_consen 196 RYLHCSL--CGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLK 249 (290)
T ss_dssp EEEEETT--T--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEEE
T ss_pred EEEEcCC--CCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHH
Confidence 7889995 66788543 4432 110 0111 23478888876544
No 65
>KOG4460|consensus
Probab=51.01 E-value=80 Score=35.20 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=27.7
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRL-LDLQSQNSLD 37 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRE-LD~~~q~~~~ 37 (422)
|-|+||+.-+-.-.||+|+...|.. +|.+.|++.+
T Consensus 571 frEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~ 606 (741)
T KOG4460|consen 571 FREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSY 606 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988864 5666666554
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.20 E-value=2.3e+02 Score=31.18 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC----ChHHHHHHHHHHHHHHhhhhhchH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA--ASM----TPEQRQREYENLLQEYNKPMIDSE 77 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~--~s~----~~ee~~~~~~~I~~~~~ka~elaD 77 (422)
+++.|+.++.-=.+++.-|..|.+.+.+-.....++....+.+-+.. .+. .-+.-+..+..|...|.+..++-.
T Consensus 110 ~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~ 189 (569)
T PRK04778 110 IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTE 189 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666666666666666666666666666555554432 121 244455566666665544443322
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 78 E-KINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 78 E-KV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
. -..=|..+++-++.++..|+..+..+-.-+..-...+|++|
T Consensus 190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql 232 (569)
T PRK04778 190 SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQL 232 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 13346667777777777777777766554554444555555
No 67
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.28 E-value=12 Score=38.48 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=21.6
Q ss_pred ceeeecCCCCCCcceec--ccCCcCC-----------CCCCCCceecccCcchhc
Q psy8390 365 VMVACDSKNCPYEWYHC--ECVGIAP-----------DNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~--~CVgi~~-----------~~~p~~~W~Cp~C~~~~k 406 (422)
..+.|.. |..+|.+. .|..=.. +.....-..|..|..-.|
T Consensus 211 RyL~Csl--C~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK 263 (309)
T PRK03564 211 RYLHCNL--CESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLK 263 (309)
T ss_pred eEEEcCC--CCCcccccCccCCCCCCCCceeeeeecCCCcceEeeecccccccce
Confidence 7788885 55677443 4432110 001122367999987555
No 68
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=48.70 E-value=12 Score=38.35 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=9.7
Q ss_pred ceeeecCCCCCCccee
Q psy8390 365 VMVACDSKNCPYEWYH 380 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH 380 (422)
.++.|.. |..+|.+
T Consensus 209 RyL~Csl--C~teW~~ 222 (305)
T TIGR01562 209 RYLSCSL--CATEWHY 222 (305)
T ss_pred eEEEcCC--CCCcccc
Confidence 6888885 5567744
No 69
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.64 E-value=1.7e+02 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 75 DSEEKINLATQIQEFFNKYTRKLEQDIQK 103 (422)
Q Consensus 75 laDEKV~LA~q~ydLVDrhiRrLD~dL~k 103 (422)
.-|+.|.--.++.+.+|.|+++|+..+++
T Consensus 70 ~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 70 QIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667888888889999999999988764
No 70
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.46 E-value=1.1e+02 Score=34.50 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=51.4
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFF 90 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLV 90 (422)
++..+-|+.-....|+.++.+++.+..++..+-..... ....+..+...+..+..--+.|+ .+
T Consensus 410 ~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee---------~k~eie~L~~~l~~~~r~~~~~~--------~~ 472 (652)
T COG2433 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEE---------LKREIEKLESELERFRREVRDKV--------RK 472 (652)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH--------hh
Confidence 45667777888888888888887766666554443322 11122223333333333223333 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhhhc
Q psy8390 91 NKYTRKLEQDIQKFKLELEADNSGITEILEKRVTD 125 (422)
Q Consensus 91 DrhiRrLD~dL~kf~~ELEadn~GIte~lEkrsl~ 125 (422)
++.++.+|..+..|+.+|+....- -++||++...
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~-ve~L~~~l~~ 506 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKR-VEELERKLAE 506 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 566666666666666666543322 2556655533
No 71
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.61 E-value=2e+02 Score=25.34 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=48.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCChHHHHHHHHH-----HHHHHhhhhhchHHHH
Q psy8390 12 EILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQ------MAASMTPEQRQREYEN-----LLQEYNKPMIDSEEKI 80 (422)
Q Consensus 12 E~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~------~~~s~~~ee~~~~~~~-----I~~~~~ka~elaDEKV 80 (422)
++||.+|+.-+..+..+-.+++.+..+....-..+-. .....+++. ..|+. |......+..--++++
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~--~VYk~VG~vlv~qd~~e~~~~l~~r~ 80 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDT--PIYKIVGNLLVKVDKTKVEKELKERK 80 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--hhHHHhhHHHhhccHHHHHHHHHHHH
Confidence 4788888888888888877777666555543322211 111222111 23332 3334455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 81 NLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
.....-..-+++....|...+.+++..|
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444444444444433
No 72
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=47.48 E-value=2.3e+02 Score=25.97 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 67 QEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFK 105 (422)
Q Consensus 67 ~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~ 105 (422)
..|+...--...-+.+-+.+++-....|.+|++++..+.
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677778888888888899999999987654
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.02 E-value=2.1e+02 Score=30.71 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 14 LPQELRDRFTEMRLLDLQSQNSLDQLQ 40 (422)
Q Consensus 14 LP~ELqR~ltlIRELD~~~q~~~~~ld 40 (422)
+|..+-..-+.|.+|..++..+...+.
T Consensus 297 ~~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 297 GPDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655555444
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.89 E-value=2.9e+02 Score=27.21 Aligned_cols=8 Identities=63% Similarity=1.456 Sum_probs=6.1
Q ss_pred ecccCcch
Q psy8390 397 YCPLCLEK 404 (422)
Q Consensus 397 ~Cp~C~~~ 404 (422)
+||.|..+
T Consensus 210 iCPlCK~K 217 (230)
T PF10146_consen 210 ICPLCKAK 217 (230)
T ss_pred CCcccccc
Confidence 59999654
No 75
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=46.73 E-value=1.5e+02 Score=28.12 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-|+--.+-.++..+.|+|+.++|.-++.=+.||
T Consensus 150 eD~~k~~e~eiQkltd~~i~~id~~~~~Kekei 182 (185)
T PRK00083 150 EDELKRAEDEIQKLTDKYIKKIDELLAAKEKEI 182 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667899999999999999998876665
No 76
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=46.57 E-value=2.6e+02 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=22.5
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNK 42 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~ 42 (422)
.+.+.+|.+++ |..+-+ ..||+++..+......+...
T Consensus 13 ~~~~~ld~~ED-P~~~l~--q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 13 NINELLDKAED-PEKMLE--QAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHhhcC-HHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 35677777776 663333 34777777776666555443
No 77
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=46.20 E-value=1e+02 Score=30.66 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHhhhhhchHH-HHHHHHHHHHHHHHHHH
Q psy8390 23 TEMRLLDLQSQNSLDQLQNKVNQFYQMAASMT---PEQRQREYENLLQEYNKPMIDSEE-KINLATQIQEFFNKYTR 95 (422)
Q Consensus 23 tlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~---~ee~~~~~~~I~~~~~ka~elaDE-KV~LA~q~ydLVDrhiR 95 (422)
..|+++|.++......++.-...--. ... .......-..|...+.++-+++.+ +|.-|..+...|+..-.
T Consensus 90 ~~i~d~drrI~~~k~RL~~~~~~~~~---~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 90 RLIRDCDRRIERAKERLEQTQEEQAK---EADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35667777666555555442221100 011 112222336888899999999988 99999998888875433
No 78
>KOG4218|consensus
Probab=46.02 E-value=9.3 Score=39.94 Aligned_cols=47 Identities=19% Similarity=0.492 Sum_probs=26.6
Q ss_pred chhcccccCCC---ceeeecCCCCCCcce--------ecccCCcCCCCCC-CCceecccCcc
Q psy8390 354 YTIFCSQVAFG---VMVACDSKNCPYEWY--------HCECVGIAPDNPP-KGKWYCPLCLE 403 (422)
Q Consensus 354 y~~~C~~~~~g---~MI~CD~c~C~~~Wf--------H~~CVgi~~~~~p-~~~W~Cp~C~~ 403 (422)
.||||+..-.| -++-|+. |+ ++| |+.|..-..-.+. ...-.||.|+-
T Consensus 17 lCPVCGDkVSGYHYGLLTCES--CK-GFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 17 LCPVCGDKVSGYHYGLLTCES--CK-GFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred ccccccCccccceeeeeehhh--hh-hHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 46666554444 6789996 75 545 5667542211111 13467998874
No 79
>KOG4552|consensus
Probab=45.79 E-value=2.3e+02 Score=28.02 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 20 DRFTEMRLLDLQSQNSLDQLQNKV-NQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLE 98 (422)
Q Consensus 20 R~ltlIRELD~~~q~~~~~ld~~~-~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD 98 (422)
|.|..+-+|+.-+.++++.+..+- .++++ .......-.++..=.++|++.++++.|--. ..+..+.++.|+.+=|
T Consensus 12 rLL~~~dDlE~i~kelie~l~~~~~qk~l~---~gE~v~il~Ll~~kd~ef~~llkla~eq~k-~e~~m~~Lea~VEkrD 87 (272)
T KOG4552|consen 12 RLLESADDLEHIVKELIETLINRDKQKMLK---NGETVNILKLLDSKDDEFKTLLKLAPEQQK-REQLMRTLEAHVEKRD 87 (272)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHh---cchHHHHHHHHHhccHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHhH
Confidence 344555555555555555443322 22332 122233334444444556666666655433 3456667778888778
Q ss_pred HHHHHHHHHHhh
Q psy8390 99 QDIQKFKLELEA 110 (422)
Q Consensus 99 ~dL~kf~~ELEa 110 (422)
.+|.+|+..|..
T Consensus 88 ~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 88 EVIQQLQKNLKS 99 (272)
T ss_pred HHHHHHHHHHHH
Confidence 887777776654
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.71 E-value=1.8e+02 Score=33.23 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 85 QIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 85 q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
..-|....+.+.||.|+++|..||..
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQ 563 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999876
No 81
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.55 E-value=1.9e+02 Score=24.69 Aligned_cols=45 Identities=7% Similarity=0.203 Sum_probs=24.8
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 65 LLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 65 I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
|......++..-++++.......+-+++.+..|...+..++..|.
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555666666666666655555443
No 82
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=45.43 E-value=5.7 Score=31.88 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=28.1
Q ss_pred ceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCC--cCCCCCCCCceecccCc
Q psy8390 341 RYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVG--IAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 341 ~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVg--i~~~~~p~~~W~Cp~C~ 402 (422)
.+.||+++.. -.|+.|..+...-.|.-. .|.+ -||..|+. +. ....||.|+
T Consensus 21 ~C~IC~~~l~--~~~~~~~~~~~~~~i~~~--~C~H-~FH~~Ci~~Wl~------~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLE--DPCPECQAPQDECPIVWG--PCGH-IFHFHCISQWLK------QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTT--STTCCHHHCTTTS-EEEE--TTSE-EEEHHHHHHHHT------TSSB-TTSS
T ss_pred cccccChhhh--ChhhhhcCCccccceEec--ccCC-CEEHHHHHHHHh------cCCcCCCCC
Confidence 3667997632 245556444434444333 3654 49999986 32 123899985
No 83
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=44.83 E-value=2.8e+02 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=18.9
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 9 ELVEILPQELRDRFTEMRLLDLQSQNSLDQLQ 40 (422)
Q Consensus 9 E~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld 40 (422)
..++.|-..|.+++..|++=+..+......++
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~ 171 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLN 171 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777765544443333333
No 84
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=44.60 E-value=8.4 Score=31.56 Aligned_cols=34 Identities=21% Similarity=0.632 Sum_probs=18.9
Q ss_pred ceeeecCCCCCCcceecccCCcCCCC-----CCCCceeccc
Q psy8390 365 VMVACDSKNCPYEWYHCECVGIAPDN-----PPKGKWYCPL 400 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~~CVgi~~~~-----~p~~~W~Cp~ 400 (422)
-||.|.+. ...|.|..|+.+++.. ....+|||.+
T Consensus 29 AMI~cs~~--~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~d 67 (78)
T PF13341_consen 29 AMIFCSRG--GGHWVHAQCMDLSETMLIQLSQENTKYFCND 67 (78)
T ss_dssp -EEEE-ST--T-EEEETGGGT--HHHHHHHHHSSS-B--TT
T ss_pred eEEEEeCC--CceEeEeecccchHHHHHHHccCCceEEEhh
Confidence 79999984 4689999999987321 1356899975
No 85
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=44.54 E-value=2.7e+02 Score=26.40 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTR 95 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiR 95 (422)
+++++..|...|+.++.+++
T Consensus 154 ae~~l~~a~~~y~~lN~~Lk 173 (216)
T cd07599 154 LERKLEEAKEEYEALNELLK 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877665
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.99 E-value=3.5e+02 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=18.5
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 9 ELVEILPQELRDRFTEMRLLDLQSQNSLDQLQN 41 (422)
Q Consensus 9 E~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~ 41 (422)
..++.|=..|.++++.|++=...+......+++
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555544444444443
No 87
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=43.60 E-value=3e+02 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 81 NLATQIQEFFNKYTRKLEQDIQKFKLE 107 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL~kf~~E 107 (422)
.+...+.++++....+|..+ ..+...
T Consensus 269 ~i~~~i~~~l~~~~~~l~~~-~~l~~~ 294 (367)
T PF04286_consen 269 FIEQIISELLEELIDKLKED-PELREK 294 (367)
T ss_pred HHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence 77888888888888777665 333333
No 88
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=43.20 E-value=1.3e+02 Score=31.67 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hCCCCchhhhhhh
Q psy8390 85 QIQEFFNKYTRKLEQDIQKFKLELEA------DNSGITEILEKRV 123 (422)
Q Consensus 85 q~ydLVDrhiRrLD~dL~kf~~ELEa------dn~GIte~lEkrs 123 (422)
.|.+|...-|..|+..+..++.+|.. .|.+-.-+||.|.
T Consensus 76 em~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRa 120 (363)
T COG0216 76 EMREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRA 120 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEec
Confidence 56777777777777777777777765 4555666667775
No 89
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=42.71 E-value=2.9e+02 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy8390 56 EQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFN-------KYTRKLEQDIQKFKLE 107 (422)
Q Consensus 56 ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVD-------rhiRrLD~dL~kf~~E 107 (422)
+....++.+|.+-..+++++.+.--.=|..+..|-| ..+-.|-.||+.|-.|
T Consensus 200 dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~ 258 (302)
T PF07139_consen 200 DREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSE 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Confidence 444556667777666776666655554444444444 4555555566555443
No 90
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.64 E-value=3e+02 Score=26.93 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=32.3
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhh
Q psy8390 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEK 121 (422)
Q Consensus 69 ~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEk 121 (422)
+..++.-+.+|+.-|+.+...+...++.+...... +...+..+.+.|..
T Consensus 197 l~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~----l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 197 LRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQE----LSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34455556668888888888888777766666543 55555666666643
No 91
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=42.57 E-value=1.6e+02 Score=24.87 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy8390 87 QEFFNKYTRKLEQ 99 (422)
Q Consensus 87 ydLVDrhiRrLD~ 99 (422)
..+|..++..++.
T Consensus 108 ~~ll~~~~~~~~~ 120 (143)
T PF05130_consen 108 QQLLEQALEFVQQ 120 (143)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.34 E-value=5e+02 Score=28.99 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchh
Q psy8390 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEI 118 (422)
Q Consensus 64 ~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~ 118 (422)
+|.+.-.-+.-++.||=+|..--.+|+ .||++|+..|.++-.+.=...+-|++.
T Consensus 418 el~Elks~lrv~qkEKEql~~EkQeL~-~yi~~Le~r~~~~~~~~~~~~~~~~~~ 471 (546)
T PF07888_consen 418 ELQELKSSLRVAQKEKEQLQEEKQELL-EYIERLEQRLDKVADEKWKEAAALTED 471 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccCc
Confidence 444444445567889999988888877 599999999988866654444444443
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.82 E-value=4.3e+02 Score=28.30 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHH
Q psy8390 64 NLLQEYNKPMIDSEEKINLATQIQEF 89 (422)
Q Consensus 64 ~I~~~~~ka~elaDEKV~LA~q~ydL 89 (422)
++.....++..+..+.-.|-..+.++
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 94
>KOG1655|consensus
Probab=41.45 E-value=66 Score=31.35 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc-hhhhhhhh
Q psy8390 80 INLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGIT-EILEKRVT 124 (422)
Q Consensus 80 V~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIt-e~lEkrsl 124 (422)
+.=.++-.+-|++.|.+||.+|.+|+.-+....+|-. +-|.+|.|
T Consensus 21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAl 66 (218)
T KOG1655|consen 21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRAL 66 (218)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4445677889999999999999999999998777733 44566554
No 95
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.26 E-value=3.9e+02 Score=28.04 Aligned_cols=100 Identities=18% Similarity=0.328 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-hHHHHH----HHHHHHHHHhhhh---hchHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAAS-MT-PEQRQR----EYENLLQEYNKPM---IDSEEKINLATQI 86 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s-~~-~ee~~~----~~~~I~~~~~ka~---elaDEKV~LA~q~ 86 (422)
.|-|-+|..|+.+=..+.+.+.......+++.....+ .+ -..|+. .+..+.++|..++ .-..+|..-++.-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3667788888888888887777777666666543321 11 111221 2223333333322 2234566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy8390 87 QEFFNKYTRKLEQDIQKFKLELEADNSGI 115 (422)
Q Consensus 87 ydLVDrhiRrLD~dL~kf~~ELEadn~GI 115 (422)
..-..+.+.+|..+|.+.+.+++.-.+.+
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777888888888888887744443
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=41.20 E-value=3.4e+02 Score=26.29 Aligned_cols=50 Identities=32% Similarity=0.458 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.+..-...|..-+....+|+.-|..-++..++-+.+|+..+..++.+|..
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777888888889999999999999999999998888876
No 97
>KOG2129|consensus
Probab=40.97 E-value=1.6e+02 Score=31.84 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=44.1
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH---
Q psy8390 12 EILPQELRDRFTEMRLLDLQSQNSLDQLQN-KVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQ--- 87 (422)
Q Consensus 12 E~LP~ELqR~ltlIRELD~~~q~~~~~ld~-~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~y--- 87 (422)
|-|-++|-|.+..+|.-...+..++.+-++ .++++++..++.. .+... ......+|.-|+|+|-+.+-
T Consensus 128 e~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Kle---n~t~~-----kq~~leQLRre~V~lentlEQEq 199 (552)
T KOG2129|consen 128 EFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLE---NKTLL-----KQNTLEQLRREAVQLENTLEQEQ 199 (552)
T ss_pred hhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh---hhhHH-----hhhhHHHHHHHHHHHhhHHHHHH
Confidence 446788889999888544444333322221 2333333222211 11111 11122344455555544332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 88 ----EFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 88 ----dLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.-+=|.|.+|++|-.-|...|+.
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22335666777887777777743
No 98
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=40.37 E-value=19 Score=38.98 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=16.2
Q ss_pred cccccchhcccccCCCc-----eeeec-CC-CCC
Q psy8390 349 AHYNFYTIFCSQVAFGV-----MVACD-SK-NCP 375 (422)
Q Consensus 349 ~~~~~y~~~C~~~~~g~-----MI~CD-~c-~C~ 375 (422)
+...|||+.|...-..- --.|- +| +||
T Consensus 23 Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP 56 (483)
T PF05502_consen 23 EIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCP 56 (483)
T ss_pred ccceeECccccccCChhhheeccceeccccccCC
Confidence 45678999996533222 23676 65 565
No 99
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.36 E-value=3.7e+02 Score=26.37 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=47.9
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHH-------HHHH-HHhhhhhchHH
Q psy8390 10 LVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAA---SMTPEQRQREYE-------NLLQ-EYNKPMIDSEE 78 (422)
Q Consensus 10 ~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~---s~~~ee~~~~~~-------~I~~-~~~ka~elaDE 78 (422)
..+.|-.+.-+.+....+|+..++++...|.+.+.+...-.. ..++......+. +|+. .|..-...+++
T Consensus 74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~ 153 (264)
T PF06008_consen 74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAED 153 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 344455556666667777777777777777776666543222 223333333333 3322 34445566666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8390 79 KINLATQIQEFFNKYT 94 (422)
Q Consensus 79 KV~LA~q~ydLVDrhi 94 (422)
=..-|..+++-|++..
T Consensus 154 El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 154 ELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777776666665
No 100
>KOG1246|consensus
Probab=40.14 E-value=22 Score=41.28 Aligned_cols=37 Identities=35% Similarity=0.951 Sum_probs=30.3
Q ss_pred ceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 365 VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
.++.|+. |. .=||..|..++....+.+.|.|+.|...
T Consensus 168 ~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 168 KLLLCDS--CD-DSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cceeccc--cc-CcccccccCCCCCcCCcCcccCCccccc
Confidence 4448886 64 4499999999888889999999999865
No 101
>PRK10244 anti-RssB factor; Provisional
Probab=40.02 E-value=2.4e+02 Score=24.12 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8390 18 LRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKL 97 (422)
Q Consensus 18 LqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrL 97 (422)
+-..|-.|-++|+...++..+++.+---.-...+.+..+........|+..+..+..-.|+ +=..-.||+-.|++||
T Consensus 5 I~elL~KlA~ke~esKeL~AQVEAlellitAlL~~~~~~~~~~li~~Ie~Ai~~a~~~~~~---~~~~D~eLL~~~v~~L 81 (88)
T PRK10244 5 IAELLAKLAQKEEESKELTAQVEALELLVTAMLRTMGKNGQQELIEQVEGAINAVSKPDDS---VPDSDTELLLTYVNKL 81 (88)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHhcccccc---ccchHHHHHHHHHHHH
Confidence 4456777889999999999998875332222333556677777778888888877555554 2334467777787776
No 102
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=39.78 E-value=2.9e+02 Score=24.98 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q psy8390 14 LPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQ 85 (422)
Q Consensus 14 LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q 85 (422)
+=.|-...-..|+++|..+..+...+.++.++|-+.+ +.-..+.+|...+.++..+-++=+.+.++
T Consensus 47 Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~a------e~L~kv~els~~L~~~~~lL~~~v~~ie~ 112 (131)
T PF10158_consen 47 VAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFA------EQLEKVNELSQQLSRCQSLLNQTVPSIET 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445577777777766666666555554321 12223445555555555544443333333
No 103
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.65 E-value=3.5e+02 Score=25.91 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHH--HHHHHHH
Q psy8390 17 ELRDRFTEMRLLDLQSQNSLDQLQNKVNQFY---QMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLAT--QIQEFFN 91 (422)
Q Consensus 17 ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl---~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~--q~ydLVD 91 (422)
-...+|.+|+.|-.++.+........-+.+. ...+.+. ++-.....++.+.-.+...+..+|..|++ ..+..++
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~-epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLS-EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555543333222221 1111111 11222233444444555566777877665 2333344
Q ss_pred HHHHHHHHHHH
Q psy8390 92 KYTRKLEQDIQ 102 (422)
Q Consensus 92 rhiRrLD~dL~ 102 (422)
+.++.|..+-.
T Consensus 100 k~l~~Lk~e~e 110 (201)
T PF13851_consen 100 KELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 104
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=39.33 E-value=18 Score=27.06 Aligned_cols=30 Identities=37% Similarity=1.082 Sum_probs=14.8
Q ss_pred eeeecCCCCCCcceecccCCcCC--CCCCCCceeccc
Q psy8390 366 MVACDSKNCPYEWYHCECVGIAP--DNPPKGKWYCPL 400 (422)
Q Consensus 366 MI~CD~c~C~~~WfH~~CVgi~~--~~~p~~~W~Cp~ 400 (422)
-|+||. | ..|=.+. .++.. ...|. .|+|..
T Consensus 3 WVQCd~--C-~KWR~lp-~~~~~~~~~~~d-~W~C~~ 34 (50)
T PF07496_consen 3 WVQCDS--C-LKWRRLP-EEVDPIREELPD-PWYCSM 34 (50)
T ss_dssp EEE-TT--T---EEEE--CCHHCTSCCSST-T--GGG
T ss_pred EEECCC--C-CceeeCC-hhhCcccccCCC-eEEcCC
Confidence 589996 7 4887765 44332 23454 999975
No 105
>PRK11637 AmiB activator; Provisional
Probab=39.24 E-value=3.8e+02 Score=28.15 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 77 EEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 77 DEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.+++.-.++-.+-+++.|.+|+.+|..++.+|+.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555554444443
No 106
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=39.09 E-value=95 Score=29.97 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH---H---HH
Q psy8390 20 DRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFF---N---KY 93 (422)
Q Consensus 20 R~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLV---D---rh 93 (422)
++|...++|..++...++........|.........+.....+..|++......-..-+=+..+.++.++| + ..
T Consensus 107 D~~ak~kelh~~l~~~~~~~~~a~~~~~~~l~~~~~~~~~~~l~~lk~~g~~~~y~~~~~~~~a~~i~~~l~~~~~~~~d 186 (276)
T PF12889_consen 107 DNFAKAKELHAKLLAAYEEFKAAYDAFDAALEKINDERRKEQLEALKKEGKMIIYYMLKLMIDAEQIIDELQSDDNQKFD 186 (276)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTTTTHHHHHHHHHHHHHHHHHHHHHT-TTS--HH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 45666677766666666666666666654332211222222222222211111111222234455555555 2 33
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8390 94 TRKLEQDIQKFKLELEA 110 (422)
Q Consensus 94 iRrLD~dL~kf~~ELEa 110 (422)
+-.++..|..|+..++.
T Consensus 187 ~~~~~~~l~~~~~~~~~ 203 (276)
T PF12889_consen 187 MAALDAALAELEKLLKD 203 (276)
T ss_dssp HHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444446666665555
No 107
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.95 E-value=2.7e+02 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchhhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGITEILE 120 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIte~lE 120 (422)
|...++.|+..+..++.++...-..||.++-
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~ 108 (425)
T PRK05431 78 LKEEIKALEAELDELEAELEELLLRIPNLPH 108 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4556777777777777777765555555553
No 108
>KOG1512|consensus
Probab=38.53 E-value=8.5 Score=39.26 Aligned_cols=36 Identities=25% Similarity=0.610 Sum_probs=25.8
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCC---CCceecccCc
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPP---KGKWYCPLCL 402 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p---~~~W~Cp~C~ 402 (422)
.-||+|.. |... +|..||.++.+.+. .-.|-|..|.
T Consensus 277 ~S~I~C~~--C~~~-~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 277 NSWIVCKP--CATR-PHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred ccceeecc--cccC-CCCcchhcCHHHHhHHhhcchhhcccH
Confidence 48999996 7655 99999998754332 3457777765
No 109
>KOG1493|consensus
Probab=37.99 E-value=16 Score=30.54 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=32.3
Q ss_pred ceeEeccccccccchhcccccCCCceeeecCCCCCCcc------eecccCCcCCCCCCCCceecccCcchh
Q psy8390 341 RYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEW------YHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 341 ~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~W------fH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
++=|||.+.+. -||-|.-+.+ +||..| ||..|+--- -..|...-.||.|+..-
T Consensus 22 ~CGiCRm~Fdg--~Cp~Ck~PgD---------dCPLv~G~C~h~fh~hCI~~w-l~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDG--CCPDCKLPGD---------DCPLVWGYCLHAFHAHCILKW-LNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCC--cCCCCcCCCC---------CCccHHHHHHHHHHHHHHHHH-hcCccccccCCcchhee
Confidence 44469987332 4777743332 355544 899997421 13566678999998653
No 110
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=37.82 E-value=2.3e+02 Score=26.64 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 77 EEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 77 DEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
|+--.+-.++..|.|+|+.++|.-++.=+.||
T Consensus 147 D~~k~~~~~iqkltd~~i~~id~~~~~Kekei 178 (179)
T cd00520 147 DEVKKAEEDLQKLTDEYIKKIDELLKSKEKEL 178 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566678899999999999999988766654
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.76 E-value=3.3e+02 Score=27.18 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8390 15 PQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYT 94 (422)
Q Consensus 15 P~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhi 94 (422)
+....+.|-.|..||...-.+...+. -..++++. ++.++..+ ..++.=.++.++-|++.+
T Consensus 2 m~~~~~~L~~iq~lD~e~~rl~~~~~-~~~~~l~k---------------~~~e~e~~----~~~~~~~~~e~e~le~qv 61 (239)
T COG1579 2 MNNNLKSLLAIQKLDLEKDRLEPRIK-EIRKALKK---------------AKAELEAL----NKALEALEIELEDLENQV 61 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHH---------------HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34455677788888887776665554 33333321 11111111 122223355667777888
Q ss_pred HHHHHHHHHHHHHHhh---hCCCCchhhhhhhhccc
Q psy8390 95 RKLEQDIQKFKLELEA---DNSGITEILEKRVTDSQ 127 (422)
Q Consensus 95 RrLD~dL~kf~~ELEa---dn~GIte~lEkrsl~~d 127 (422)
.+|+.+|.++..-++. .-.++|..-|.+.|..+
T Consensus 62 ~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 62 SQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 8888888777665544 33667776666666543
No 112
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.51 E-value=3.5e+02 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q psy8390 64 NLLQEYNKPMIDSEEKINLATQIQEFFNK 92 (422)
Q Consensus 64 ~I~~~~~ka~elaDEKV~LA~q~ydLVDr 92 (422)
+..+.++..-+..+||.+|+..+.+||.-
T Consensus 113 Eykealea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 113 EYKEALEAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555557789999999999999974
No 113
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=36.62 E-value=3.4e+02 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchhhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGITEILE 120 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIte~lE 120 (422)
|...|..|+..+..++.++...-..||.++-
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4556777777777777777765555555553
No 114
>PLN02678 seryl-tRNA synthetase
Probab=36.06 E-value=2.3e+02 Score=30.67 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIte~lEkrs 123 (422)
|...|..|+.++..++.+|...-..||.++-...
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 4567788888888888888876666666664444
No 115
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.96 E-value=4e+02 Score=25.54 Aligned_cols=116 Identities=10% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHH
Q psy8390 4 LEDYIELVEILPQ-ELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINL 82 (422)
Q Consensus 4 LEDyLE~IE~LP~-ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~L 82 (422)
+.+.+|.+|+ |. -|...+.+|++ .+.+....+-+.+...... .-...+.......+.+.-..++.-++|-++-
T Consensus 15 ~n~~~dk~ED-P~~~l~q~irem~~---~l~~ar~~lA~~~a~~k~~--e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 15 LNALLDKAED-PEKMIRLIIQEMED---TLVEVRTTSARTIADKKEL--ERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhhhc
Q psy8390 83 AT--------QIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTD 125 (422)
Q Consensus 83 A~--------q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEkrsl~ 125 (422)
.. ...+-+...+.++...+.+|+..|..-...|.+.=-++.++
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=35.81 E-value=2.5e+02 Score=23.63 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=22.1
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFY 47 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl 47 (422)
||+.|-+....++..|.+.-.++++ |-.-+..++.|...++.|+
T Consensus 40 ~l~~y~~~~~~~~~~l~~L~~l~~~-~p~q~~~l~~l~~~~~~~~ 83 (138)
T PF05227_consen 40 FLEPYQEARARLEKALAQLRQLVQD-NPEQQERLDQLEELIDQWR 83 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 5555655555555555444444421 2234445555655555555
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=34.99 E-value=30 Score=33.04 Aligned_cols=51 Identities=25% Similarity=0.718 Sum_probs=32.8
Q ss_pred ceeE-eccccccccchhcccccC--C----CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 341 RYCR-CNEQAHYNFYTIFCSQVA--F----GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 341 ~yCi-C~~~~~~~~y~~~C~~~~--~----g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.-|. |.+. -|.|-+|+..+ + ..-+.|+. |. .-||-.|..-. .||.|.+..+
T Consensus 143 ~~C~lC~~k---GfiCe~C~~~~~IfPF~~~~~~~C~~--C~-~v~H~~C~~~~---------~CpkC~R~~~ 200 (202)
T PF13901_consen 143 YSCELCQQK---GFICEICNSDDIIFPFQIDTTVRCPK--CK-SVFHKSCFRKK---------SCPKCARRQK 200 (202)
T ss_pred HHhHHHHhC---CCCCccCCCCCCCCCCCCCCeeeCCc--Cc-cccchhhcCCC---------CCCCcHhHhc
Confidence 3465 7643 25688885432 1 25678996 64 45999999631 2999987654
No 118
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=34.95 E-value=2.8e+02 Score=23.52 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8390 18 LRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKL 97 (422)
Q Consensus 18 LqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrL 97 (422)
+...+-.|-++|+...++..+++.+---.....+.++...+.+....|...+..+..-.|+=... -.+|+..|+++|
T Consensus 5 i~~lL~KlA~~e~esKeL~AqVEAleivitALL~~l~~~~~~~~i~~I~~Ai~~a~~~~~~~~~s---d~eLL~~~~~~L 81 (87)
T PF10796_consen 5 IAELLAKLAEKEAESKELTAQVEALEIVITALLRTLDQGGRQEMIESIEKAIEDASPSSDVPLKS---DAELLLQYVKKL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhcccCCccchH---HHHHHHHHHHHH
Confidence 45667788899999999998888753322222335677888888899999999888877654331 356777777766
No 119
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=34.56 E-value=4.4e+02 Score=25.60 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=17.6
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQN 34 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~ 34 (422)
|..+|++.++.| -++=..|.+|+..+..
T Consensus 3 ~t~eY~~lld~l----~~Nnr~L~~L~~dl~~ 30 (196)
T PF15272_consen 3 YTSEYLELLDQL----DQNNRALSDLNQDLRE 30 (196)
T ss_pred chHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 788999877654 4555555555554443
No 120
>KOG4360|consensus
Probab=34.27 E-value=3.6e+02 Score=29.99 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 22 FTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDI 101 (422)
Q Consensus 22 ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL 101 (422)
+.++|+.-.++....++|.++++.... ..++.-.++..|-...++++.+.-||=.+-..+....|+| |+|..++
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~-----q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~-~ql~aE~ 277 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSR-----QQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ-RQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 344555555555555555555554432 1244444667788888888888888888888888888877 4555555
Q ss_pred HH
Q psy8390 102 QK 103 (422)
Q Consensus 102 ~k 103 (422)
+.
T Consensus 278 ~E 279 (596)
T KOG4360|consen 278 EE 279 (596)
T ss_pred HH
Confidence 43
No 121
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=34.09 E-value=4e+02 Score=24.93 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=54.7
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HH--HHHHHHHhhhhhchHHHHHHHHH
Q psy8390 9 ELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQR-EY--ENLLQEYNKPMIDSEEKINLATQ 85 (422)
Q Consensus 9 E~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~-~~--~~I~~~~~ka~elaDEKV~LA~q 85 (422)
+-.|+-=.|+.+.-.+|.++-.++...++++|.+-......-.+...-.+.. .| ..|++.|.+|..++-+..-+-++
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~ 99 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777777777777777777776655544322221112211 12 46888999888888766655555
Q ss_pred HHHH------HHHHHHHHHHHHHH
Q psy8390 86 IQEF------FNKYTRKLEQDIQK 103 (422)
Q Consensus 86 ~ydL------VDrhiRrLD~dL~k 103 (422)
-..| +++.+++|..-+.+
T Consensus 100 E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44455555544443
No 122
>PRK14154 heat shock protein GrpE; Provisional
Probab=33.99 E-value=3.4e+02 Score=26.50 Aligned_cols=11 Identities=0% Similarity=-0.085 Sum_probs=5.6
Q ss_pred HHHHHHhhhhh
Q psy8390 64 NLLQEYNKPMI 74 (422)
Q Consensus 64 ~I~~~~~ka~e 74 (422)
-|...|.+++.
T Consensus 110 pVlDnLeRAL~ 120 (208)
T PRK14154 110 PVADSLIHGLE 120 (208)
T ss_pred hHHhHHHHHHh
Confidence 44445555554
No 123
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.75 E-value=3.8e+02 Score=24.58 Aligned_cols=44 Identities=11% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhchHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 60 REYENLLQEYNKPMIDSEE---KINLATQIQEFFNKYTRKLEQDIQK 103 (422)
Q Consensus 60 ~~~~~I~~~~~ka~elaDE---KV~LA~q~ydLVDrhiRrLD~dL~k 103 (422)
..|..+-..|.+++.+-++ ++.+...+++=|+.-+..+-..|.+
T Consensus 100 ~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~ 146 (182)
T PF15469_consen 100 GDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWE 146 (182)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888777 7889999999999888887776643
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.69 E-value=2e+02 Score=28.43 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 9 ELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQF 46 (422)
Q Consensus 9 E~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kf 46 (422)
..++-|=.+|...+..++..+.-+.++..+++.+....
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er 48 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQER 48 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777776676666666655543
No 125
>KOG4603|consensus
Probab=33.48 E-value=2.7e+02 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 86 IQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 86 ~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
.-+++|+.+.-|+.+-..|..||
T Consensus 175 f~ei~d~~~e~~pk~ksel~eel 197 (201)
T KOG4603|consen 175 FREIIDKLLEGLPKKKSELYEEL 197 (201)
T ss_pred HHHHHHHHHcCCcchHHHHHHHh
Confidence 34566777777777766666655
No 126
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=33.36 E-value=7.2e+02 Score=27.69 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 28 LDLQSQNSLDQLQNKVNQFYQMAASMTPE--QRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFK 105 (422)
Q Consensus 28 LD~~~q~~~~~ld~~~~kfl~~~~s~~~e--e~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~ 105 (422)
|+..+..++..|..+-.+|..-.-+.+.. .-...+.++..++.-...-+.||+. +..+.++.|++++...+..|.
T Consensus 349 le~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~---~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 349 LEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLD---QWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555655555555432233322 2233455666666666666667663 566777888888887776666
Q ss_pred HHHhh
Q psy8390 106 LELEA 110 (422)
Q Consensus 106 ~ELEa 110 (422)
.+|+.
T Consensus 426 qqI~~ 430 (531)
T PF15450_consen 426 QQIEE 430 (531)
T ss_pred HHHHH
Confidence 55544
No 127
>KOG0796|consensus
Probab=33.32 E-value=4.4e+02 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=48.9
Q ss_pred ccHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHH-HH
Q psy8390 2 LYLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEE-KI 80 (422)
Q Consensus 2 ~YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDE-KV 80 (422)
.|=.||++.|+.+=.|+++....+++.=+..++ +....-. . +.++...+-..|...+.++-+|+.| +|
T Consensus 79 ~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~e------e~~~e~~----~-k~~~v~~l~e~I~~~l~~~E~LG~eG~V 147 (319)
T KOG0796|consen 79 GYEWDALEILERFVADVDRRIEKAKERLAETVE------ERSEEAA----R-KAEKVHELEEKIGKLLEKAEELGEEGNV 147 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhhHHH----H-HHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 455678888888888887775555543222211 1111000 0 0122222335788888888888876 68
Q ss_pred HHHHHHHHHHHHHHH
Q psy8390 81 NLATQIQEFFNKYTR 95 (422)
Q Consensus 81 ~LA~q~ydLVDrhiR 95 (422)
.-|+.+...|++-..
T Consensus 148 eeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 148 EEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876554
No 128
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=33.23 E-value=3.3e+02 Score=26.31 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 75 DSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 75 laDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
--||.-.+-..+.-|=|.++.++|.-++.-+.||
T Consensus 151 sEDe~k~~e~~iQKlTd~yi~~iD~~~~~KEkEi 184 (187)
T COG0233 151 SEDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEI 184 (187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888889999999999999988766665
No 129
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.88 E-value=7e+02 Score=27.46 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=3.6
Q ss_pred cccCCCcc
Q psy8390 150 RSELPNAT 157 (422)
Q Consensus 150 ~~~~~~~~ 157 (422)
+.++||++
T Consensus 436 k~~lpgip 443 (569)
T PRK04778 436 KSNLPGLP 443 (569)
T ss_pred HcCCCCCc
Confidence 34455444
No 130
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=32.39 E-value=6.3 Score=28.05 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred hhcccccC--CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCc
Q psy8390 355 TIFCSQVA--FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 355 ~~~C~~~~--~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~ 402 (422)
|++|.+.- ...++... |. -+||..|+.--. .....||.|+
T Consensus 3 C~IC~~~~~~~~~~~~l~---C~-H~fh~~Ci~~~~----~~~~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFEDGEKVVKLP---CG-HVFHRSCIKEWL----KRNNSCPVCR 44 (44)
T ss_dssp ETTTTCBHHTTSCEEEET---TS-EEEEHHHHHHHH----HHSSB-TTTH
T ss_pred CcCCChhhcCCCeEEEcc---CC-CeeCHHHHHHHH----HhCCcCCccC
Confidence 55554422 33555554 64 679999986321 1124899885
No 131
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=32.04 E-value=81 Score=31.83 Aligned_cols=55 Identities=56% Similarity=1.316 Sum_probs=50.6
Q ss_pred CCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 335 YGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 335 ~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
...++.+||+|+ ++.+|.||.||+.+|+++|||+.|||+. .+|+|+||||.|...
T Consensus 216 ~se~e~lYCfCq-------------qvSyGqMVaCDn~nCkrEWFH~~CVGLk--~pPKG~WYC~eCk~~ 270 (271)
T COG5034 216 NSEGEELYCFCQ-------------QVSYGQMVACDNANCKREWFHLECVGLK--EPPKGKWYCPECKKA 270 (271)
T ss_pred cccCceeEEEec-------------ccccccceecCCCCCchhheeccccccC--CCCCCcEeCHHhHhc
Confidence 336788999999 7899999999999999999999999999 999999999999753
No 132
>PRK11637 AmiB activator; Provisional
Probab=31.59 E-value=5.1e+02 Score=27.21 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy8390 16 QELRDRFT 23 (422)
Q Consensus 16 ~ELqR~lt 23 (422)
..+.|.+.
T Consensus 152 ~~~~r~~~ 159 (428)
T PRK11637 152 QRGERILA 159 (428)
T ss_pred hHHHHHHH
Confidence 34444333
No 133
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=31.36 E-value=1.4e+02 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHHHhhcChHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHhcC
Q psy8390 5 EDYIELVEILPQELRDRFTEM-RLLDLQSQ-----NSLDQLQNKVNQFYQMAAS 52 (422)
Q Consensus 5 EDyLE~IE~LP~ELqR~ltlI-RELD~~~q-----~~~~~ld~~~~kfl~~~~s 52 (422)
..||+ +.+|..|.+.-.+- +.||..+. ++.+++.++++-|++....
T Consensus 89 ~~yL~--~e~p~~l~~~e~~~~~~ld~~y~~~IieDIrKQl~~RI~~YlqQ~~~ 140 (176)
T PF10737_consen 89 HQYLE--EEAPQRLEQLEQQYNVPLDDSYRSFIIEDIRKQLPQRIQFYLQQVQP 140 (176)
T ss_pred HHHHH--HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Confidence 34554 46677776665554 35666654 6678999999999987654
No 134
>KOG2626|consensus
Probab=30.65 E-value=61 Score=35.72 Aligned_cols=53 Identities=19% Similarity=0.540 Sum_probs=35.1
Q ss_pred CCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCC---CCCC---CCceecccCcch
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAP---DNPP---KGKWYCPLCLEK 404 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~---~~~p---~~~W~Cp~C~~~ 404 (422)
....+|+|... +.-+-.-++|.. | ..|||..|+.... ...| .-.|.|..|...
T Consensus 18 ~~~~~~y~e~~-----------r~l~~~elqcs~--c-lk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 18 KQATVCYCEGE-----------RNLGIVELQCST--C-LKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred cCccccccccc-----------cccCceeeEeee--c-ccccccccccccccccccCCcccceeEEeccccCc
Confidence 34578999853 233448899995 6 6999986654321 1222 346999999876
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.50 E-value=3.4e+02 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 58 RQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 58 ~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
....+..+.+.|..+..-..++-.-=..+++.++..+..|+.+..+|..-.+.
T Consensus 134 nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~ 186 (560)
T PF06160_consen 134 NREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN 186 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33456788888888888888888888899999999999999999999875544
No 136
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.44 E-value=20 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=10.8
Q ss_pred chhcccccCCC-ceeeecCCCCCCcceecccC
Q psy8390 354 YTIFCSQVAFG-VMVACDSKNCPYEWYHCECV 384 (422)
Q Consensus 354 y~~~C~~~~~g-~MI~CD~c~C~~~WfH~~CV 384 (422)
.|.+|+...++ ..-.|.. |+ -++|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~--Cd-f~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSE--CD-FDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TT--T------HHHH
T ss_pred cCCcCCCcCCCCceEECcc--CC-CccChhcC
Confidence 36667666666 7778985 76 45898874
No 137
>KOG1666|consensus
Probab=29.74 E-value=4.6e+02 Score=25.90 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHH-----HHHHHHHHHHHHHH
Q psy8390 24 EMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLAT-----QIQEFFNKYTRKLE 98 (422)
Q Consensus 24 lIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~-----q~ydLVDrhiRrLD 98 (422)
.+-..+.+|..+..+|.+.+...+. .+..++...+.+|.+.+.++.++-+ +|.|.. ..--.+...+|---
T Consensus 4 ~fe~yEqqy~~l~a~it~k~~~~~~----~~~~ekk~~l~~i~~~leEa~ell~-qMdlEvr~lp~~~Rs~~~~KlR~yk 78 (220)
T KOG1666|consen 4 LFEGYEQQYRELSAEITKKIGRALS----LPGSEKKQLLSEIDSKLEEANELLD-QMDLEVRELPPNFRSSYLSKLREYK 78 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc----CCchHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCchhhhHHHHHHHHHH
Confidence 4556777888888888777776553 4577888888888888888877764 444443 23455667778888
Q ss_pred HHHHHHHHHHhhh
Q psy8390 99 QDIQKFKLELEAD 111 (422)
Q Consensus 99 ~dL~kf~~ELEad 111 (422)
++|++|+.|+...
T Consensus 79 sdl~~l~~e~k~~ 91 (220)
T KOG1666|consen 79 SDLKKLKRELKRT 91 (220)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888763
No 138
>PHA02414 hypothetical protein
Probab=29.44 E-value=3.4e+02 Score=23.81 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHH---HHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 27 LLDLQSQNSLDQLQNKVNQFYQM--AASMTPEQRQREY---ENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDI 101 (422)
Q Consensus 27 ELD~~~q~~~~~ld~~~~kfl~~--~~s~~~ee~~~~~---~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL 101 (422)
++|.+++++..+++..-.+.-.. ..+.+..+..... +.|--.+.+=..+..|| |.-|--.|.|||..+
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEK-------qshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEK-------QSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHH-------hhHHHHHHHHHHHHH
Confidence 46788888888877766655321 1233333333222 33333444444444444 455556778888888
Q ss_pred HHHHH
Q psy8390 102 QKFKL 106 (422)
Q Consensus 102 ~kf~~ 106 (422)
..|..
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 76544
No 139
>PF07342 DUF1474: Protein of unknown function (DUF1474); InterPro: IPR009942 This entry is represented by Bacteriophage PT1028, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.
Probab=29.25 E-value=3.9e+02 Score=23.35 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=29.8
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 69 ~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
+.....+-+-.|+. +|+.||+--|++++|.-|++|+. ||.
T Consensus 48 ~~~g~~YhEhRI~n-~Q~~dL~~~Ylkefd~li~kF~e-iEK 87 (100)
T PF07342_consen 48 INHGYSYHEHRIQN-TQTIDLMHMYLKEFDELIEKFKE-IEK 87 (100)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444555555554 58899999999999999999965 444
No 140
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=29.24 E-value=5.5e+02 Score=25.08 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=20.5
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQ 38 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ 38 (422)
||++-++.++.|=.|.++...+|-+|+.++...-..
T Consensus 31 FLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 31 FLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555566666666666666666554443
No 141
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=29.20 E-value=55 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.663 Sum_probs=19.8
Q ss_pred chhcccccCCCc-eeeecCCCCCCcceecccC
Q psy8390 354 YTIFCSQVAFGV-MVACDSKNCPYEWYHCECV 384 (422)
Q Consensus 354 y~~~C~~~~~g~-MI~CD~c~C~~~WfH~~CV 384 (422)
-|-+|++...|+ +-.|+. |... +|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~--c~f~-lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSE--CCFT-LHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCC--CCCe-EcCccC
Confidence 366776767777 888974 6555 888884
No 142
>KOG1937|consensus
Probab=29.01 E-value=5.9e+02 Score=28.00 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCChHHHHHHH-HHHHHHHhhhhhchHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQ---NKVNQFYQMAASMTPEQRQREY-ENLLQEYNKPMIDSEEK 79 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld---~~~~kfl~~~~s~~~ee~~~~~-~~I~~~~~ka~elaDEK 79 (422)
.....+-++++-.|=.+ |..|++|...++..-.+++ +...++.....+.++.-....| ..|.+
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikE------------ 393 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKE------------ 393 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 80 INLATQIQEFFNKYTRKLEQDIQKFKLE 107 (422)
Q Consensus 80 V~LA~q~ydLVDrhiRrLD~dL~kf~~E 107 (422)
|+..||++++||-|...|
T Consensus 394 ----------i~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 394 ----------IDGNIRKQEQDIVKILEE 411 (521)
T ss_pred ----------HHhHHHHHHHHHHHHHHH
No 143
>KOG4796|consensus
Probab=28.60 E-value=6.2e+02 Score=28.40 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8390 15 PQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYT 94 (422)
Q Consensus 15 P~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhi 94 (422)
-.+|..-+.|-|+|-.++......+.++-.++...+.... ++.+..-++|..+|++.. .|-=+.-..+=++-+-..+
T Consensus 507 k~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS-~ey~~i~~qI~qEYeki~--~dp~y~eeK~RceYLhsKL 583 (604)
T KOG4796|consen 507 KKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGS-PEYKQIEKQILQEYEKIR--KDPNYMEEKQRCEYLHSKL 583 (604)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CcHHHHHHHHHHHHHHhh--cCccHHHHHHHHHHHHHHH
Confidence 3466667788888888887777666666555543332222 223445578888888877 3333333445577777777
Q ss_pred HHHHHHHHHHHHHH
Q psy8390 95 RKLEQDIQKFKLEL 108 (422)
Q Consensus 95 RrLD~dL~kf~~EL 108 (422)
++|-.-|..|+.-.
T Consensus 584 aHIK~lI~efDk~~ 597 (604)
T KOG4796|consen 584 AHIKTLIGEFDKQQ 597 (604)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777776643
No 144
>KOG4674|consensus
Probab=27.98 E-value=6e+02 Score=32.48 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=61.6
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------C-hHHHHHHHHHHHHH
Q psy8390 8 IELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASM------------------T-PEQRQREYENLLQE 68 (422)
Q Consensus 8 LE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~------------------~-~ee~~~~~~~I~~~ 68 (422)
...|..|-.+|.....+.++.+..+++-.+.+...+..+-....+. . .-.....+......
T Consensus 635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~ 714 (1822)
T KOG4674|consen 635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKN 714 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777766666555554333322111110 0 11111233455666
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 69 ~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
|...+...+.+++...+=+--....+++|+.++.+++.|-+.
T Consensus 715 l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~l 756 (1822)
T KOG4674|consen 715 LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLL 756 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777888888888887777443
No 145
>KOG1011|consensus
Probab=27.97 E-value=2.6e+02 Score=32.10 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=65.0
Q ss_pred HhhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q psy8390 10 LVEILPQELRDRFTEM--RLLDLQSQNSLDQLQNKVNQFYQMAAS----MTPEQRQREYENLLQEYNKPMIDSEEKINLA 83 (422)
Q Consensus 10 ~IE~LP~ELqR~ltlI--RELD~~~q~~~~~ld~~~~kfl~~~~s----~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA 83 (422)
++..|-..|-..|.-| .|||+...+.+.+++.+.+..+..... .-.+...+...++-..+-++..-++.|-.+|
T Consensus 853 nvqqlrvqlekmfeamggkeld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~~a~~sva 932 (1283)
T KOG1011|consen 853 NVQQLRVQLEKMFEAMGGKELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTGLAKTSVA 932 (1283)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccccchhhcc
Confidence 4555666667777777 589999999999988887776653321 1122233344555666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
+.+-..++-.+.-||..|..|..-.|
T Consensus 933 ~dad~vl~plmdlldgnlt~fa~~ce 958 (1283)
T KOG1011|consen 933 QDADAVLEPLMDLLDGNLTLFADQCE 958 (1283)
T ss_pred cchHHHHHHHHHHHhchHHHHHHHHH
Confidence 77766666666666666666654443
No 146
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.88 E-value=29 Score=32.87 Aligned_cols=22 Identities=36% Similarity=0.830 Sum_probs=18.2
Q ss_pred CCceeeecCCCCCCcceecccCCcC
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIA 387 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~ 387 (422)
-|.||.|-+ |. .-||-.|+|.-
T Consensus 14 kG~Lv~CQG--Cs-~sYHk~CLG~R 35 (175)
T PF15446_consen 14 KGPLVYCQG--CS-SSYHKACLGPR 35 (175)
T ss_pred CCCeEEcCc--cC-hHHHhhhcCCc
Confidence 489999996 65 44999999976
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.87 E-value=3.6e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCc
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGIT 116 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIt 116 (422)
|...|..|+.++..++.++..--..||
T Consensus 79 lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455666677777777666665444444
No 148
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.65 E-value=2.4e+02 Score=30.26 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=11.0
Q ss_pred HHHHhhcChHHHHHHHH
Q psy8390 7 YIELVEILPQELRDRFT 23 (422)
Q Consensus 7 yLE~IE~LP~ELqR~lt 23 (422)
|-+.|++=|..+...|.
T Consensus 362 l~~al~~np~~V~~lF~ 378 (462)
T PRK08032 362 LTKALKEDPAGVKALFV 378 (462)
T ss_pred HHHHHHHCHHHHHHHhC
Confidence 55666666777777664
No 149
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.34 E-value=9.2e+02 Score=27.89 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=20.6
Q ss_pred hcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8390 12 EILPQELRDRFTEM-RLLDLQSQNSLDQLQNKVNQF 46 (422)
Q Consensus 12 E~LP~ELqR~ltlI-RELD~~~q~~~~~ld~~~~kf 46 (422)
-.||.++..+=..+ .+.+.++.+++..+++....+
T Consensus 492 ~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~ 527 (771)
T TIGR01069 492 YGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKEL 527 (771)
T ss_pred hCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35677765554443 556666666666666655444
No 150
>KOG1473|consensus
Probab=26.90 E-value=20 Score=42.55 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred hhcccccCCCceeeecCCCCCCcceec-ccCC--cCCCCCCCCceecccCcchh
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHC-ECVG--IAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~-~CVg--i~~~~~p~~~W~Cp~C~~~~ 405 (422)
|.+|+ .++..|+|+. .|| .-||+ .|++ .-+...+++-|+|++|....
T Consensus 431 l~Ie~--~det~l~yys-T~p-qly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 431 LRIEG--MDETLLWYYS-TCP-QLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eEEec--CCCcEEEEec-CcH-HHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 55553 4678999997 598 45999 9999 44456789999999997643
No 151
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.90 E-value=7.5e+02 Score=25.90 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=67.7
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hcCCCh---HHHH----HHHHHHHHHHhhhh
Q psy8390 6 DYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQ-M----AASMTP---EQRQ----REYENLLQEYNKPM 73 (422)
Q Consensus 6 DyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~-~----~~s~~~---ee~~----~~~~~I~~~~~ka~ 73 (422)
+..+....|=..|...+.+|.++...+..+...|.....-+-- . .+..-| .=++ .+..++ ..+...+
T Consensus 255 et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev-~~l~~~i 333 (384)
T PF03148_consen 255 ETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV-KELRESI 333 (384)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH-HHHHHHH
Confidence 3444555666777777888888888777777766654432210 0 011111 1111 122344 4566777
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8390 74 IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEAD 111 (422)
Q Consensus 74 elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEad 111 (422)
....+|+.-|...+..+.++.-+|+.||..-..-|..|
T Consensus 334 ~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD 371 (384)
T PF03148_consen 334 EALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFID 371 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77889999999999999999999999998765555544
No 152
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.72 E-value=3.6e+02 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQ 99 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~ 99 (422)
.+.+|......-....++++.-.+...+-+..-+..++.
T Consensus 62 ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 62 LLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444334334433444433333
No 153
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.66 E-value=7.1e+02 Score=28.48 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKF 104 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf 104 (422)
...++...+++.+..-.+.|.||-.=.||.+.||--|+.+++.+
T Consensus 99 ~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~ 142 (683)
T PF08580_consen 99 EVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEEC 142 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33456667788888889999999999999999999999888753
No 154
>KOG3133|consensus
Probab=26.61 E-value=5.4e+02 Score=26.15 Aligned_cols=53 Identities=6% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q psy8390 18 LRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNK 71 (422)
Q Consensus 18 LqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~k 71 (422)
+.-.+..|--.|. ++.-+++|..++-+||+.++..-+.+...+|.++.+.+.+
T Consensus 148 m~~iMqqllSKEI-LyeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~ 200 (267)
T KOG3133|consen 148 MESIMQQLLSKEI-LYEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKE 200 (267)
T ss_pred HHHHHHHHHHHHH-hhhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 4445555555665 6788899999999999988775555555666555554433
No 155
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.35 E-value=1.1e+03 Score=28.65 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCchhhh
Q psy8390 93 YTRKLEQDIQKFKLELEADNSGITEILE 120 (422)
Q Consensus 93 hiRrLD~dL~kf~~ELEadn~GIte~lE 120 (422)
...+|...+..++..+ +++.+|+...
T Consensus 443 ~~~~~~~~l~~l~~~~--~~~~~~~e~~ 468 (1201)
T PF12128_consen 443 QREQLKSELAELKQQL--KNPQYTEEEK 468 (1201)
T ss_pred HHHHHHHHHHHHHHHH--hCcCCCHHHH
Confidence 3334455555555443 6788887763
No 156
>KOG0412|consensus
Probab=26.29 E-value=7e+02 Score=28.91 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHH---HHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQ---LQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEK---INLATQIQEF 89 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~---ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEK---V~LA~q~ydL 89 (422)
.|+.+.++.|++||+.++.+..+ +++.++.|+.+...... +....+....+.+.-....++|= +.=.+..-|-
T Consensus 24 ~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~-~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~ 102 (773)
T KOG0412|consen 24 GELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIEG-ENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAET 102 (773)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-hHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 47888999999999999887754 45567777765333222 22233333334333333333322 1222344455
Q ss_pred HHHHHHHHHHHHHHH
Q psy8390 90 FNKYTRKLEQDIQKF 104 (422)
Q Consensus 90 VDrhiRrLD~dL~kf 104 (422)
|-..+|.||..-...
T Consensus 103 Vs~kVr~lDla~~Rv 117 (773)
T KOG0412|consen 103 VSGKVRALDLAQNRV 117 (773)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666776554443
No 157
>KOG1705|consensus
Probab=26.26 E-value=29 Score=29.94 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=30.8
Q ss_pred hhcccccCC--CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 355 TIFCSQVAF--GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 355 ~~~C~~~~~--g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|++|+..-. ...--||+ |.++-|...|+--.. .--.+-|||.+|.+..+
T Consensus 30 C~ICDS~VRP~tlVRiC~e--C~~Gs~q~~ciic~~-~gV~d~~yc~ectr~ek 80 (110)
T KOG1705|consen 30 CVICDSYVRPCTLVRICDE--CNYGSYQGRCVICGG-VGVSDAYYCKECTRQEK 80 (110)
T ss_pred ccccccccccceeeeeehh--cCCccccCceEEecC-CcccchHHHHHHHhhcc
Confidence 777754222 24445996 777778888864331 11136799999986654
No 158
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=26.26 E-value=44 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.807 Sum_probs=18.4
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
|+-+.|+. |...||. ...|.|||..|-.
T Consensus 6 ~~~~~C~~--C~~~~~~----------~~dG~~yC~~cG~ 33 (36)
T PF11781_consen 6 GPNEPCPV--CGSRWFY----------SDDGFYYCDRCGH 33 (36)
T ss_pred cCCCcCCC--CCCeEeE----------ccCCEEEhhhCce
Confidence 34456775 6555664 5678999988853
No 159
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.25 E-value=45 Score=39.46 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=18.5
Q ss_pred CCCCceeE-eccccccccchhcccccCCCceeeec
Q psy8390 337 PDEPRYCR-CNEQAHYNFYTIFCSQVAFGVMVACD 370 (422)
Q Consensus 337 ~~e~~yCi-C~~~~~~~~y~~~C~~~~~g~MI~CD 370 (422)
+-...+|. |+... ..+.|+.|+... .....|-
T Consensus 623 EVg~RfCpsCG~~t-~~frCP~CG~~T-e~i~fCP 655 (1121)
T PRK04023 623 EIGRRKCPSCGKET-FYRRCPFCGTHT-EPVYRCP 655 (1121)
T ss_pred cccCccCCCCCCcC-CcccCCCCCCCC-CcceeCc
Confidence 34556787 98653 446688886542 2333454
No 160
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=26.03 E-value=18 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.617 Sum_probs=14.2
Q ss_pred eeecCCCCCCcceecccCCcCCCCCCCCceecccC
Q psy8390 367 VACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLC 401 (422)
Q Consensus 367 I~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C 401 (422)
+.|.+.+|... +|..|+.--..... .. .||.|
T Consensus 12 ~~C~~~~C~~r-~H~~C~~~y~r~~~-~~-~CP~C 43 (43)
T PF08746_consen 12 QRCSNRDCNVR-LHDDCFKKYFRHRS-NP-KCPNC 43 (43)
T ss_dssp EE-SS--S--E-E-HHHHHHHTTT-S-S--B-TTT
T ss_pred ccCCCCccCch-HHHHHHHHHHhcCC-CC-CCcCC
Confidence 56887778766 69999873211111 22 78877
No 161
>KOG4299|consensus
Probab=26.02 E-value=50 Score=36.92 Aligned_cols=37 Identities=30% Similarity=0.724 Sum_probs=27.1
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCC---CceecccCcc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPK---GKWYCPLCLE 403 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~---~~W~Cp~C~~ 403 (422)
.+|..++|+. |+ .-||..|.+.... |. ..|.|..|..
T Consensus 55 ~~gn~~~~~~--~~-~s~h~~~~~~~~s--p~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 55 SGGNLLCCDH--CP-ASFHLECDKPPLS--PDLKGSEINCSRCPK 94 (613)
T ss_pred hcCCcccccc--Cc-cccchhccCcccC--cccccccccccCCCc
Confidence 5788899996 87 4599999998743 54 4566666654
No 162
>KOG4484|consensus
Probab=25.92 E-value=6e+02 Score=24.43 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=20.8
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQ 48 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~ 48 (422)
||-+|-- ++||.+++--+.. .-.|++-|--+.++....++.|.
T Consensus 36 ~eRlLkk-~~LP~~Vr~e~er-~L~~Lk~ql~~~~l~~k~rkif~ 78 (199)
T KOG4484|consen 36 LERLLKK-KDLPPEVREELER-KLQDLKKQLDNHELLAKERKIFK 78 (199)
T ss_pred HHHHHhh-ccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 7899988754432 11233333333344444444443
No 163
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.83 E-value=9.7e+02 Score=27.75 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=11.5
Q ss_pred cChHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy8390 13 ILPQELRDRFTEM-RLLDLQSQNSLDQLQN 41 (422)
Q Consensus 13 ~LP~ELqR~ltlI-RELD~~~q~~~~~ld~ 41 (422)
.||.++..+=..+ .+=+.++..++..+++
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555544433332 2222333444444443
No 164
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=25.78 E-value=6.1e+02 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=16.3
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 70 NKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKF 104 (422)
Q Consensus 70 ~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf 104 (422)
..+++.+.+--......++.++..|..|..-...+
T Consensus 90 ~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L 124 (296)
T PF13949_consen 90 REYLEQASESDSQLRSKLESIEENLELLSGPIEEL 124 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhH
Confidence 33333344444444455555555555555444333
No 165
>KOG0977|consensus
Probab=25.59 E-value=3.3e+02 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhh
Q psy8390 88 EFFNKYTRKLEQDIQKFKLELEADNSGITEILE 120 (422)
Q Consensus 88 dLVDrhiRrLD~dL~kf~~ELEadn~GIte~lE 120 (422)
.++.+-++.|+.++..+ .++|..|.+.|.
T Consensus 158 ~~~krr~~~le~e~~~L----k~en~rl~~~l~ 186 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRL----KAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhhhHHHHH
Confidence 33444444455444433 336666777763
No 166
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.34 E-value=4.8e+02 Score=27.05 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=7.5
Q ss_pred HHHHHHhhcCh
Q psy8390 5 EDYIELVEILP 15 (422)
Q Consensus 5 EDyLE~IE~LP 15 (422)
+||||.+|.|=
T Consensus 96 NdYLE~vEdii 106 (309)
T TIGR00570 96 NDYLEEVEDIV 106 (309)
T ss_pred HHHHHHHHHHH
Confidence 57777777653
No 167
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.25 E-value=6.9e+02 Score=24.92 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 64 ~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
++...-..+.++-++.-.|...+-++.++|+ +++.++...+..++..-.+|.+..
T Consensus 104 r~~~le~el~~l~~~~~~l~~~i~~l~~~~~-~~e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 104 RINSLEDELAELMEEIEKLEKEIEDLKERLE-RLEKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666777777777777776654 456666666666666555555543
No 168
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.17 E-value=5.8e+02 Score=24.33 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8390 84 TQIQEFFNKYTRKLEQDIQK 103 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~k 103 (422)
..+++-|.--.+.|..-|.+
T Consensus 114 ~~l~~Gvem~~~~l~~~L~k 133 (193)
T COG0576 114 KALLEGVEMTLDQLLDALEK 133 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 169
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.16 E-value=6.9e+02 Score=24.83 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---C-----CC-hHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q psy8390 14 LPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA-A---S-----MT-PEQRQREYENLLQEYNKPMIDSEEKINLA 83 (422)
Q Consensus 14 LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~-~---s-----~~-~ee~~~~~~~I~~~~~ka~elaDEKV~LA 83 (422)
+..++.+.-.++..|+.++....+++++....+.... + + .+ ...+...+...+..+..++.-.++++.-.
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666666677777777766666666555554322 1 1 11 22333344455555555554444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
++... ....+|+....+...+.+..+.+..-.|
T Consensus 213 ~~~~~---~~~~~l~~~~~~~~a~~~~~~~~~~G~l 245 (301)
T PF14362_consen 213 DAQIA---ARKARLDEARQAKVAEFQAIISANDGFL 245 (301)
T ss_pred HhhHH---HHHHHHHHHHHHHHHHHhHhhccCCCHH
Confidence 32222 5666666666665555554433333333
No 170
>KOG0994|consensus
Probab=24.74 E-value=9.5e+02 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=21.9
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 70 NKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 70 ~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
+...+.-.|-++.|.+++-.+..-|+..|.++..-+..|
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l 1600 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLL 1600 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444445556666666666666666666665544443
No 171
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=24.69 E-value=3.6e+02 Score=21.43 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 32 SQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 32 ~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
++.+.+.+++++..+-...+..+ ..+.. +--++.+++|-+.+-.+.-++.+ +.+|...+..|...|
T Consensus 23 l~~~a~~i~~~i~~~~~~~~~~~-~~~~~--------vlaaLnla~e~~~~~~~~~~~~~--~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 23 LRKAAELINEKINEIKKKYPKLS-PERLA--------VLAALNLADELLKLKRELDELEE--LERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHCTTCCTSS-HHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-HHHHH--------HHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhh
Confidence 34445555555555544322222 22222 22344455555555444444433 445555555554444
No 172
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=24.69 E-value=6.1e+02 Score=24.12 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
.+.++..|.+-|+.|...+++ ++..|+.+.-
T Consensus 155 ~e~~~~~a~~~~e~is~~~k~---El~rF~~~r~ 185 (216)
T cd07627 155 AERRASELKKEFEEVSELIKS---ELERFERERV 185 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 566777777777777766654 6666655443
No 173
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=24.68 E-value=5.2e+02 Score=24.59 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC-------CChHHHHHHH-HHHHHHHhhhhh
Q psy8390 6 DYIELVEILPQELRDRFTEMRLLDLQSQNSLDQL---QNKVNQFYQMAAS-------MTPEQRQREY-ENLLQEYNKPMI 74 (422)
Q Consensus 6 DyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~l---d~~~~kfl~~~~s-------~~~ee~~~~~-~~I~~~~~ka~e 74 (422)
.+-.-++.|-.+..-+-.++.+++..+..+...- .+.+..++..... .........| .-|...+.++..
T Consensus 43 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~p~y~~Mi~~L~~qvk~ 122 (177)
T PF03234_consen 43 ERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLNEPFDKKEKPGVENKDPEQPTYDEMIEDLLDQVKK 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhcccccccccccccCCCCCCCHHHHHHHHHHHHhc
Confidence 4445566666666666666666666665544331 1222333322110 0111111122 234555556666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 75 DSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 75 laDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
..|++- ...+...|..|..+|+......+.+|+.
T Consensus 123 ~~de~~--~~~~~~~l~~H~~kl~~~~ke~~~kLee 156 (177)
T PF03234_consen 123 EPDEKS--GKAELEELQEHRAKLEKEQKELKKKLEE 156 (177)
T ss_pred ccCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655 8888899999999999888888887765
No 174
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=24.58 E-value=9.4e+02 Score=27.84 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLA 83 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA 83 (422)
+..|.+.++..=..|.|.-..|.+++.++..+..++++. .+|.........-+..-...++ ..+..-+.-.++++.-.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a-~~~~~~~~~~~~l~~~l~~~~~-~~~~~~l~~~~~~~~~~ 244 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSL-ERQAEKAERYKELKAELRELEL-ALLVLRLEELREELEEL 244 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
..-++.+..-+..+..++..++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (1179)
T TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEE 271 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 175
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=24.48 E-value=7.1e+02 Score=27.78 Aligned_cols=31 Identities=10% Similarity=-0.042 Sum_probs=15.2
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy8390 65 LLQEYNKPMIDSEEKINLATQIQEFFNKYTR 95 (422)
Q Consensus 65 I~~~~~ka~elaDEKV~LA~q~ydLVDrhiR 95 (422)
+.+.+..-..++||=.+-..++|++++-.+|
T Consensus 426 ~~kk~~~~~~fse~~~~el~~l~~~~~~n~~ 456 (533)
T COG1283 426 ADKKIANGRAFSEDGLEELDALFALTLENLR 456 (533)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555544443
No 176
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.40 E-value=3.1e+02 Score=30.94 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 87 QEFFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 87 ydLVDrhiRrLD~dL~kf~~ELE 109 (422)
|+........|+..+.+++..+.
T Consensus 347 ~~~a~~~~~~L~~~l~~~~~~~~ 369 (754)
T TIGR01005 347 ADAAQARESQLVSDVNQLKAASA 369 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544443
No 177
>KOG2879|consensus
Probab=24.39 E-value=39 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=16.5
Q ss_pred eecccCCcCCCCCCCCceecccCcchhc
Q psy8390 379 YHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 379 fH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|=+.|+.-. -.-+-.|.||.|.....
T Consensus 262 yCY~Ci~ts--~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 262 YCYYCIATS--RLWDASFTCPLCGENVE 287 (298)
T ss_pred eehhhhhhh--hcchhhcccCccCCCCc
Confidence 566777543 23344689999987543
No 178
>KOG0823|consensus
Probab=24.36 E-value=49 Score=32.75 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=26.6
Q ss_pred hhcccccCCCceeeecCCCCCCcceecccCC-cCCC-CCCCCceecccCcchh
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHCECVG-IAPD-NPPKGKWYCPLCLEKM 405 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVg-i~~~-~~p~~~W~Cp~C~~~~ 405 (422)
|++|-+...+..|-| |. |+.|++ |-.+ .+....-.||-|....
T Consensus 50 CNICLd~akdPVvTl----CG----HLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 50 CNICLDLAKDPVVTL----CG----HLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred eeeeccccCCCEEee----cc----cceehHHHHHHHhhcCCCeeCCcccccc
Confidence 667766666777766 42 666665 2111 2444567899998654
No 179
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.34 E-value=5e+02 Score=23.00 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy8390 17 ELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFF 90 (422)
Q Consensus 17 ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLV 90 (422)
++...+..++++......++.+..+..+.++.. .+.-...-.+|...+..+..+..+=..+-.+..++.
T Consensus 21 ~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~-----~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 21 AFVKSLPQVQELQQEREELLAENEELAEQNLSL-----EPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHGGGGS--HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667888888888888888888877652 122223334444444444444444333334444443
No 180
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=24.27 E-value=17 Score=24.42 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=16.2
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
|.+. ||..|+..-. ..+...||.|..
T Consensus 18 C~H~-~c~~C~~~~~---~~~~~~Cp~C~~ 43 (45)
T cd00162 18 CGHV-FCRSCIDKWL---KSGKNTCPLCRT 43 (45)
T ss_pred CCCh-hcHHHHHHHH---HhCcCCCCCCCC
Confidence 4333 8999986321 114577999965
No 181
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.27 E-value=6.1e+02 Score=23.97 Aligned_cols=60 Identities=18% Similarity=0.353 Sum_probs=46.2
Q ss_pred cCCChHHHHHHHHHHHHHHhhhhhchH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q psy8390 51 ASMTPEQRQREYENLLQEYNKPMIDSE------EKINLATQIQEFFNKYTRKLE-QDIQKFKLELEA 110 (422)
Q Consensus 51 ~s~~~ee~~~~~~~I~~~~~ka~elaD------EKV~LA~q~ydLVDrhiRrLD-~dL~kf~~ELEa 110 (422)
..+++.++.+.+..+...|.|....+. .++.+|-.+.+++-.+++... +.+..|-.-||.
T Consensus 90 ~~~~~~~k~~~LasLaDsf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~P~h~~af~eiLep 156 (165)
T PF08822_consen 90 EDMPPQEKVELLASLADSFSKMVAASKRVLPETSELAVAMEVLELLAAFVQERYPQHLAAFLEILEP 156 (165)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456788999999999999988877664 578888888888888887766 666666665654
No 182
>KOG1671|consensus
Probab=24.03 E-value=37 Score=33.03 Aligned_cols=19 Identities=53% Similarity=1.024 Sum_probs=14.4
Q ss_pred eecccCCcCCCCCC-CCceecc
Q psy8390 379 YHCECVGIAPDNPP-KGKWYCP 399 (422)
Q Consensus 379 fH~~CVgi~~~~~p-~~~W~Cp 399 (422)
-|+.||-+. .+- -|.||||
T Consensus 154 ThLGCVp~~--~AGd~gg~~CP 173 (210)
T KOG1671|consen 154 THLGCVPIA--NAGDYGGYYCP 173 (210)
T ss_pred ccccccccc--cccccCceecc
Confidence 399999775 333 4789999
No 183
>KOG0964|consensus
Probab=23.88 E-value=4.9e+02 Score=31.27 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhh-hhcccc
Q psy8390 88 EFFNKYTRKLEQDIQKFKLELEADNSGITEILEKR-VTDSQQ 128 (422)
Q Consensus 88 dLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEkr-sl~~d~ 128 (422)
+-|+.-++.|+..|..+..|.+.-...-|++++++ -|+|+.
T Consensus 268 ~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 268 EDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34445666666666666666666555556666555 344444
No 184
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=23.63 E-value=99 Score=33.19 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
..+.+.|++.|..||.||..|+.|+|-
T Consensus 349 ~~A~~~~~~~i~~LDrEI~~Lk~E~~l 375 (418)
T TIGR03755 349 KPAQQEVDKAIDKLDREINNLKTELEL 375 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999998875
No 185
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.62 E-value=6.9e+02 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 15 PQELRDRFTEMRLLDLQSQNSLDQLQNKVNQF 46 (422)
Q Consensus 15 P~ELqR~ltlIRELD~~~q~~~~~ld~~~~kf 46 (422)
+..+.......-....+.|..++++++....+
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L 54 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQEL 54 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444433
No 186
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.58 E-value=6.5e+02 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 87 QEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 87 ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
++-.+.++..|+.++.++..++..
T Consensus 337 L~~~~~~~~~Le~~~~~l~~~~~~ 360 (557)
T COG0497 337 LDNSEESLEALEKEVKKLKAELLE 360 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344456777777777777776654
No 187
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.46 E-value=61 Score=31.22 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=8.5
Q ss_pred CceecccCcc
Q psy8390 394 GKWYCPLCLE 403 (422)
Q Consensus 394 ~~W~Cp~C~~ 403 (422)
..|.||+|.-
T Consensus 47 ~V~vCP~Cgy 56 (214)
T PF09986_consen 47 EVWVCPHCGY 56 (214)
T ss_pred eEEECCCCCC
Confidence 6799999974
No 188
>KOG0612|consensus
Probab=23.25 E-value=6.6e+02 Score=30.83 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFF 90 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLV 90 (422)
+.-|+..|.+...+++.+|.+++.+. .+++..+++-............-.- +=...+..-+...+||+.....-..-+
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~-~~~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l 513 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVA-ELEEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKL 513 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCchhh-hhhhhc
Q psy8390 91 NKYTRKLEQDIQKFKLELEADNSGITEIL-EKRVTD 125 (422)
Q Consensus 91 DrhiRrLD~dL~kf~~ELEadn~GIte~l-Ekrsl~ 125 (422)
.+++|+|..+|+..+......+......+ +++.|+
T Consensus 514 ~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 514 EALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 189
>KOG0956|consensus
Probab=23.05 E-value=63 Score=36.83 Aligned_cols=56 Identities=25% Similarity=0.608 Sum_probs=33.9
Q ss_pred CceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccC---CcC-CCC--CCCCceecccCcc
Q psy8390 340 PRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECV---GIA-PDN--PPKGKWYCPLCLE 403 (422)
Q Consensus 340 ~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CV---gi~-~~~--~p~~~W~Cp~C~~ 403 (422)
.++-||.+....+ +..-|--+.|..-.|. .-||..|. |+- +++ .-+..-||-.|.-
T Consensus 118 KtCYIC~E~Grpn-------kA~~GACMtCNKs~Ck-qaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 118 KTCYICNEEGRPN-------KAAKGACMTCNKSGCK-QAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKY 179 (900)
T ss_pred ceeeeecccCCcc-------ccccccceecccccch-hhhhhhHhhhhccceeccccccccceechhHHH
Confidence 3445598653221 2223555677777896 55999994 433 333 2245689999974
No 190
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.04 E-value=6.7e+02 Score=24.38 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=42.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy8390 12 EILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQM---AASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQE 88 (422)
Q Consensus 12 E~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~---~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~yd 88 (422)
+.|..+|...-.++.++..++..++.+++..-+..-+. .+......-...+..|...|.+++......-. -+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~-----~~ 90 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSA-----DP 90 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccccc-----ch
Confidence 45555665555566666555554444444322222111 11111111222333455566666654321100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchh
Q psy8390 89 FFNKYTRKLEQDIQKFKLELEADNSGITEI 118 (422)
Q Consensus 89 LVDrhiRrLD~dL~kf~~ELEadn~GIte~ 118 (422)
.+...+.=++.-+++|..-|+. -||+++
T Consensus 91 ~~~~i~~Gvemi~k~~~~~L~k--~GV~~I 118 (208)
T PRK14155 91 AVKNFIIGVEMTEKELLGAFER--NGLKKI 118 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--CCCcee
Confidence 1233444444445555555543 666654
No 191
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=22.84 E-value=22 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|.+. ||..|+.-=. ..+-.||.|+..-
T Consensus 54 CnHa-FH~HCI~rWL----~Tk~~CPld~q~w 80 (88)
T COG5194 54 CNHA-FHDHCIYRWL----DTKGVCPLDRQTW 80 (88)
T ss_pred cchH-HHHHHHHHHH----hhCCCCCCCCcee
Confidence 4434 9999986211 1156788887643
No 192
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.70 E-value=59 Score=35.30 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=7.9
Q ss_pred ceecccCcch
Q psy8390 395 KWYCPLCLEK 404 (422)
Q Consensus 395 ~W~Cp~C~~~ 404 (422)
.|.||.|...
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 4899999753
No 193
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=22.69 E-value=5.9e+02 Score=26.08 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 58 RQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 58 ~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
....++.|...+.....-.-+=+..-.++|+-.-.++..|+..+...+.-++.
T Consensus 96 v~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~ 148 (333)
T PF05816_consen 96 VQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEE 148 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666777788888888888888776655554444
No 194
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.62 E-value=6.2e+02 Score=30.90 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 6 DYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQF 46 (422)
Q Consensus 6 DyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kf 46 (422)
++-+.|+.|=.++...-+.|.+++.++..+...++.....+
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444455555555555555555555555555554444333
No 195
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=22.54 E-value=7.3e+02 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 82 LATQIQEFFNKYTRKLEQDIQKFK 105 (422)
Q Consensus 82 LA~q~ydLVDrhiRrLD~dL~kf~ 105 (422)
++.++-.+++.+...|+.-+..|.
T Consensus 242 ~~~~~~~~l~~~~~~l~~~l~~l~ 265 (291)
T TIGR00996 242 ASAQVRDLLAENRPNLPQALANLA 265 (291)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334555566666666555554443
No 196
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.21 E-value=6.2e+02 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.1
Q ss_pred ccHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q psy8390 2 LYLEDYIELVEILPQELRDRFTEMRLLDLQSQ 33 (422)
Q Consensus 2 ~YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q 33 (422)
.||+-|++++|.-=-+=.+.+++++.+|.+..
T Consensus 11 ~~~~sf~~~Le~WvklQk~~l~~lk~~~~~~k 42 (151)
T COG4755 11 EYLESFMERLEQWVKLQKRQLKELKSHGEHMK 42 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 48999999999888888888999998888664
No 197
>PLN02320 seryl-tRNA synthetase
Probab=22.15 E-value=6.6e+02 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 89 FFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 89 LVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
.|...|..|+.++..++.++...--.||.++
T Consensus 141 ~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445666667777666666666444444444
No 198
>KOG4721|consensus
Probab=22.13 E-value=1e+03 Score=27.56 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHhhhh---hchHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 25 MRLLDLQSQNSLDQLQNKVNQFYQMAASMT---PEQRQREYENLLQEYNKPM---IDSEEKINLATQIQEFFNKYTRKLE 98 (422)
Q Consensus 25 IRELD~~~q~~~~~ld~~~~kfl~~~~s~~---~ee~~~~~~~I~~~~~ka~---elaDEKV~LA~q~ydLVDrhiRrLD 98 (422)
++.-.++|+...++-.+.++..|....... .--.++++++=.+++..++ +.=+.|++-+|++|+-+..-+-+|+
T Consensus 373 l~~tee~yf~sq~swrEevk~h~~~it~~gt~ih~~eeelirrR~eelrHa~DIR~~YE~KLertN~ly~eLs~cm~qLe 452 (904)
T KOG4721|consen 373 LSTTEETYFKSQASWREEVKLHFEKITSEGTCIHRLEEELIRRRREELRHALDIREHYERKLERTNNLYMELSACMLQLE 452 (904)
T ss_pred hcccHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777776665432211 1112222233333333333 3346899999999999999988886
Q ss_pred ---HHHHHHHHHHhhhCCC
Q psy8390 99 ---QDIQKFKLELEADNSG 114 (422)
Q Consensus 99 ---~dL~kf~~ELEadn~G 114 (422)
.+|.+-+..|+.-.+|
T Consensus 453 lkEkElaerEq~l~rr~pg 471 (904)
T KOG4721|consen 453 LKEKELAEREQALERRCPG 471 (904)
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 6677777777776666
No 199
>COG1773 Rubredoxin [Energy production and conversion]
Probab=22.12 E-value=84 Score=24.56 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=8.7
Q ss_pred CceecccCcc
Q psy8390 394 GKWYCPLCLE 403 (422)
Q Consensus 394 ~~W~Cp~C~~ 403 (422)
+.|.||.|..
T Consensus 35 d~w~CP~Cg~ 44 (55)
T COG1773 35 DDWVCPECGV 44 (55)
T ss_pred CccCCCCCCC
Confidence 5899999985
No 200
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.10 E-value=22 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=16.8
Q ss_pred CCC--CcceecccCCcCCCCCCCCceecccCc
Q psy8390 373 NCP--YEWYHCECVGIAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 373 ~C~--~~WfH~~CVgi~~~~~p~~~W~Cp~C~ 402 (422)
.|. ..|+|..|+.-= -...+.-.||.|.
T Consensus 20 ~C~G~~~~vH~~Cl~~W--~~~~~~~~C~iC~ 49 (49)
T smart00744 20 RCKGSLKYVHQECLERW--INESGNKTCEICK 49 (49)
T ss_pred ccCCchhHHHHHHHHHH--HHHcCCCcCCCCC
Confidence 364 369999998622 1122334788873
No 201
>PRK02224 chromosome segregation protein; Provisional
Probab=22.08 E-value=1.1e+03 Score=27.02 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINL 82 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~L 82 (422)
++++|-+.+..+|.++...-..+.++..++..+...++. ......+....+.+...+....+.+.-
T Consensus 469 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------------~~~l~~l~~~~~~l~~~~~~~~e~le~ 534 (880)
T PRK02224 469 TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------------EDRIERLEERREDLEELIAERRETIEE 534 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhh
Q psy8390 83 ATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEK 121 (422)
Q Consensus 83 A~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEk 121 (422)
+..-++.+..-+..|..++..+..+.+.-.....+..++
T Consensus 535 ~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 573 (880)
T PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
No 202
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.08 E-value=6.5e+02 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhchH
Q psy8390 55 PEQRQREYENLLQEYNKPMIDSE 77 (422)
Q Consensus 55 ~ee~~~~~~~I~~~~~ka~elaD 77 (422)
++.-.+...+|+.++.......+
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~ 342 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEE 342 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444455555555554444333
No 203
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=22.02 E-value=4.2e+02 Score=24.95 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA--ASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFF 90 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~--~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLV 90 (422)
.+++..+..+.++=.++..++++=.+....|++.- ++..++++..+-..|++.+..+.+.-=+=++++..+++++
T Consensus 52 ~~~~~~~~~~~~~~~~ll~l~d~D~~af~~~~~a~klPk~T~eek~~R~~~i~~al~~A~~vPl~~a~~~~~~l~~~ 128 (184)
T PF04961_consen 52 EELKEIIEKLEELREELLDLADEDAEAFNAVMAAYKLPKETDEEKAARSEAIQEALKEAAEVPLEIARLCLELLELA 128 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCTS---SGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554444444443333444444321 2334666667777888888887776644444444443333
No 204
>KOG4515|consensus
Probab=22.00 E-value=7.5e+02 Score=24.14 Aligned_cols=27 Identities=0% Similarity=0.099 Sum_probs=11.5
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 12 EILPQELRDRFTEMRLLDLQSQNSLDQ 38 (422)
Q Consensus 12 E~LP~ELqR~ltlIRELD~~~q~~~~~ 38 (422)
+..-.|=......++++|..+..+...
T Consensus 109 ~aVA~dQn~lv~r~K~v~~s~~tLf~~ 135 (217)
T KOG4515|consen 109 KAVAADQNKLVARCKSVEASMITLFEE 135 (217)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 205
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.95 E-value=7.1e+02 Score=23.83 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQN 41 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~ 41 (422)
|..|-+.=..||.-|.++-.+||-|=.++....+....
T Consensus 49 L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 49 LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899999999999999888887766655544
No 206
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.67 E-value=6.4e+02 Score=24.81 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=62.8
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Ch-HHHHHHHHHHHHHHhhhhhchHHHHHHH
Q psy8390 8 IELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASM---TP-EQRQREYENLLQEYNKPMIDSEEKINLA 83 (422)
Q Consensus 8 LE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~---~~-ee~~~~~~~I~~~~~ka~elaDEKV~LA 83 (422)
.|.=-.|=.+|+..|.+--+++..|.. .|++++++|+...... .. ...-..+......+.....++.+...||
T Consensus 14 te~~i~lLed~~~F~r~RaeIE~EYs~---~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a~~h~~ls 90 (241)
T cd07656 14 TEAQVQLLADLQDYFRRRAEIELEYSR---SLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQESRDHSTLS 90 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455777778888888888865 4555677775532211 11 1111245667777888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhhhcccc
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQ 128 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEkrsl~~d~ 128 (422)
..+-.-|-.-|..|-.++.....-....+.-+.+.|.+=--+++.
T Consensus 91 e~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k 135 (241)
T cd07656 91 DIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQT 135 (241)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755444333344444443333333333333333444333334443
No 207
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.61 E-value=1.1e+03 Score=28.71 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 79 KINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 79 KV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
++...+.-...+...+++|+.++..++.||+.
T Consensus 1062 ~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1062 NIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33334444455557788999999999999943
No 208
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.52 E-value=4.3e+02 Score=22.33 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=24.7
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQN 34 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~ 34 (422)
++++++..+.+=|.-+.-.|..++.+++.+.+
T Consensus 27 ~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 27 FLEDLLQLLQSSPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777788888888887775
No 209
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.48 E-value=2.1e+02 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=10.2
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHH
Q psy8390 7 YIELVEILPQELRDRFTEMRLLDLQS 32 (422)
Q Consensus 7 yLE~IE~LP~ELqR~ltlIRELD~~~ 32 (422)
+++.+..+=.+|+..+..|-++|.++
T Consensus 50 ~~~~l~~k~~~l~~~l~~Id~Ie~~V 75 (99)
T PF10046_consen 50 NLEDLNQKYEELQPYLQQIDQIEEQV 75 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444333
No 210
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=21.37 E-value=79 Score=30.08 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCceeeecCCCCCCcceecccCCcC
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIA 387 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~ 387 (422)
.+..|..|.. |.+.| |+.-+...
T Consensus 120 ~~nVLFRC~~--C~Raw-H~~HLP~~ 142 (175)
T PF15446_consen 120 PDNVLFRCTS--CHRAW-HFEHLPPP 142 (175)
T ss_pred hhheEEecCC--cccee-ehhhCCCC
Confidence 4557889996 77775 88887654
No 211
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=21.20 E-value=25 Score=28.32 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=9.2
Q ss_pred cceecccCCcC
Q psy8390 377 EWYHCECVGIA 387 (422)
Q Consensus 377 ~WfH~~CVgi~ 387 (422)
.|||+.|+...
T Consensus 39 ~W~H~~C~~~~ 49 (82)
T PF00645_consen 39 KWYHWDCFFKK 49 (82)
T ss_dssp EEEEHHHHHHT
T ss_pred ceECccccccc
Confidence 79999998754
No 212
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=21.20 E-value=2.4e+02 Score=25.70 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=25.1
Q ss_pred HHHHHHH--hhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 4 LEDYIEL--VEILPQELRDRFTEMRLLDLQSQNSLDQL 39 (422)
Q Consensus 4 LEDyLE~--IE~LP~ELqR~ltlIRELD~~~q~~~~~l 39 (422)
|+|||.. -..|+.|+..+|.+|...=.+.-+...+.
T Consensus 86 LN~fL~~~~e~dl~Pevlk~fe~m~~~a~~~a~~a~~~ 123 (134)
T PF08400_consen 86 LNDFLTAPDEDDLRPEVLKRFEEMVAQAARSAEAAAES 123 (134)
T ss_pred HHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899974 36899999999988876544444333333
No 213
>PRK05802 hypothetical protein; Provisional
Probab=20.98 E-value=43 Score=34.04 Aligned_cols=39 Identities=31% Similarity=0.675 Sum_probs=25.5
Q ss_pred CCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCC
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVG 385 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVg 385 (422)
-...||.|.-.+. --|++|.+..+.. .|| | ..| ++-|+-
T Consensus 10 ~~~~~cpc~la~~--~~c~~c~~~~~~~--~c~---c-~~w-~g~c~~ 48 (320)
T PRK05802 10 AGSEYCPCHLAET--GECIVCSQLQGKK--FCD---C-KNW-KGVCIY 48 (320)
T ss_pred cCCCcCceeeecc--CCcEEEhhhcCCc--ccc---c-cCC-eeEEeh
Confidence 3457999984422 2399998776653 366 8 367 788853
No 214
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.96 E-value=6.2e+02 Score=22.97 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy8390 18 LRDRFTEMRLLDLQSQNS-LDQLQNKVNQF 46 (422)
Q Consensus 18 LqR~ltlIRELD~~~q~~-~~~ld~~~~kf 46 (422)
+.+.|+-||-|-+.+.++ +.+|++..++|
T Consensus 4 ~lk~l~n~R~lra~~re~~~e~Lee~~ekl 33 (134)
T PRK10328 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKF 33 (134)
T ss_pred HHHHHhhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666665555443 24444444444
No 215
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=20.94 E-value=1.1e+03 Score=25.57 Aligned_cols=103 Identities=16% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh--------cC---------CChHHHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQ----NKVNQFYQMA--------AS---------MTPEQRQREY 62 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld----~~~~kfl~~~--------~s---------~~~ee~~~~~ 62 (422)
+.+++.....||.||++.=..+|+||..+.+-+..-+ +.+..+|... ++ .+++...+.-
T Consensus 180 ~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~~~~~~G~vL~~~~~~~d~l~~SdqGrsF~aF~~~L~d~~~~~~l~ 259 (478)
T PF11855_consen 180 ARQILQLARELPADFRRVEDNFRELDRALRERIIDWDGSRGEVLDEYFDGYDALAESDQGRSFRAFWDFLLDPERQAELD 259 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhHHHHhcCCCCCcHHHHHHHHcCHHHHHHHH
Confidence 4578889999999999999999999999865443222 1233333221 11 2344444444
Q ss_pred HHHHHHHh--hhhhch-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q psy8390 63 ENLLQEYN--KPMIDS-EEKINLATQIQEFF------NKYTRKLEQDIQKFKL 106 (422)
Q Consensus 63 ~~I~~~~~--ka~ela-DEKV~LA~q~ydLV------DrhiRrLD~dL~kf~~ 106 (422)
..|..-+. -+..+. ++.-.|..-.++|+ .+-+++|...|..|-.
T Consensus 260 ~~l~~Vl~~~~~~~L~~~~r~~Lr~l~~~l~~~~~~V~~~~~~~s~~Lrrfv~ 312 (478)
T PF11855_consen 260 ELLDQVLARPFARDLDPDQRRFLRRLHRRLLEAGEEVQRTRRRLSRSLRRFVR 312 (478)
T ss_pred HHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555443 333333 33334555444443 3556777777777643
No 216
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=20.85 E-value=7.5e+02 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 84 TQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 84 ~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
..+=++|+.|..||-.-+..+...+
T Consensus 175 ~~~P~~~~~~~~~l~~ri~~~~~~~ 199 (290)
T COG1561 175 SLMPEILEWYRERLVARLNEAQDQL 199 (290)
T ss_pred HhChHHHHHHHHHHHHHHHHHhccc
Confidence 4555666666666665555544333
No 217
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.83 E-value=6.6e+02 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=9.5
Q ss_pred hhcChHHHHHHHHHHHHHHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQ 33 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q 33 (422)
+..||.||.+.-..+.++...+.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 218
>KOG0161|consensus
Probab=20.78 E-value=7.8e+02 Score=31.76 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhh---hCCCCchhhhhhhhcc
Q psy8390 63 ENLLQEYNKPMIDSEEKINLATQIQEF-------------FNKYTRKLEQDIQKFKLELEA---DNSGITEILEKRVTDS 126 (422)
Q Consensus 63 ~~I~~~~~ka~elaDEKV~LA~q~ydL-------------VDrhiRrLD~dL~kf~~ELEa---dn~GIte~lEkrsl~~ 126 (422)
..|...-+++..+.+-|-.|-+++-|+ ++++.|+|+.++..+...++. .-.....+|.+...++
T Consensus 999 ~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El 1078 (1930)
T KOG0161|consen 999 DDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666555 456667777777555554432 2223444555555554
Q ss_pred cc
Q psy8390 127 QQ 128 (422)
Q Consensus 127 d~ 128 (422)
-+
T Consensus 1079 ~~ 1080 (1930)
T KOG0161|consen 1079 SQ 1080 (1930)
T ss_pred HH
Confidence 44
No 219
>KOG2846|consensus
Probab=20.53 E-value=48 Score=34.40 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=27.5
Q ss_pred eeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhccccc
Q psy8390 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKA 410 (422)
Q Consensus 366 MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r~~ 410 (422)
-|.|.+ | . .|-+|+... +.+--.|+||+|....+.++.
T Consensus 220 ALIC~~--C--~-~HNGla~~e--e~~yi~F~C~~Cn~LN~~~k~ 257 (328)
T KOG2846|consen 220 ALICSQ--C--H-HHNGLARKE--EYEYITFRCPHCNALNPAKKS 257 (328)
T ss_pred hhcchh--h--c-cccCcCChh--hcCceEEECccccccCCCcCC
Confidence 345664 6 2 588998774 677778999999987665544
No 220
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.42 E-value=1.2e+03 Score=25.97 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhhc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchH
Q psy8390 4 LEDYIELVEI------LPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSE 77 (422)
Q Consensus 4 LEDyLE~IE~------LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaD 77 (422)
|++=|+.|+. -+.++...+..+.+++.++..+..++.....+.-.. ...-+.....+..+.+...+...+ .
T Consensus 403 ~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~ 479 (650)
T TIGR03185 403 LEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETL--KEAIEALRKTLDEKTKQKINAFEL-E 479 (650)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhH-H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy8390 78 EKINLATQIQEFFNKYTRKLEQD-IQKFKLEL 108 (422)
Q Consensus 78 EKV~LA~q~ydLVDrhiRrLD~d-L~kf~~EL 108 (422)
.++..|+.+.++++....+|... +..++.++
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~ 511 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEI 511 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.33 E-value=59 Score=29.42 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=18.2
Q ss_pred CCCCceeE-eccccccccchhcccccC
Q psy8390 337 PDEPRYCR-CNEQAHYNFYTIFCSQVA 362 (422)
Q Consensus 337 ~~e~~yCi-C~~~~~~~~y~~~C~~~~ 362 (422)
.--.|+|+ |+.-+..+-||+.|+.+.
T Consensus 94 ~~~~W~Cv~C~~~Y~GeK~C~~C~tGi 120 (128)
T PF11682_consen 94 RKTDWHCVMCGNHYHGEKYCPKCGTGI 120 (128)
T ss_pred cCceEEEecCCCccCcCEecCCCCCcc
Confidence 34468898 998777777777775433
No 222
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.06 E-value=3.9e+02 Score=25.47 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=21.2
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 68 EYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLE 107 (422)
Q Consensus 68 ~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~E 107 (422)
.+.+.++.-.+=++-|....+-+.+.+..|+.+|.+.+.|
T Consensus 136 ~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 136 IYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444434444445555566666666666666665543
No 223
>KOG3579|consensus
Probab=20.03 E-value=82 Score=32.41 Aligned_cols=54 Identities=30% Similarity=0.680 Sum_probs=32.6
Q ss_pred CCCCCCCCCceeE-eccccccccchhcccccCCCceeeecCCCCCCcceecccCCcC-CCCCCCCceecc
Q psy8390 332 DTGYGPDEPRYCR-CNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIA-PDNPPKGKWYCP 399 (422)
Q Consensus 332 ~~~~d~~e~~yCi-C~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~-~~~~p~~~W~Cp 399 (422)
+...-+...++|. |++ ..++.-+|+|-. -+..=|-|.|-.-. ..+-..++.|||
T Consensus 260 ~s~~A~~apLcCTLC~E------------RLEDTHFVQCPS--Vp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 260 DSGAAPSAPLCCTLCHE------------RLEDTHFVQCPS--VPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred ccccCCCCceeehhhhh------------hhccCceeecCC--CcccceecccCHHHHHhhcCCCceeCC
Confidence 4555677788997 995 456668889885 33222444443211 123346899999
Done!