Query psy8390
Match_columns 422
No_of_seqs 296 out of 1344
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:25:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afl_A P29ING4, inhibitor of g 100.0 7.5E-29 2.6E-33 209.6 11.7 102 1-102 3-104 (104)
2 2jmi_A Protein YNG1, ING1 homo 99.8 1.7E-19 5.8E-24 149.7 2.9 59 333-406 19-78 (90)
3 1weu_A Inhibitor of growth fam 99.7 1.4E-18 4.7E-23 144.5 6.3 61 332-407 28-88 (91)
4 1x4i_A Inhibitor of growth pro 99.7 2.8E-19 9.5E-24 141.8 1.7 64 336-414 2-65 (70)
5 1wen_A Inhibitor of growth fam 99.7 2E-18 6.8E-23 137.3 5.4 60 332-406 8-67 (71)
6 2g6q_A Inhibitor of growth pro 99.7 5E-19 1.7E-23 137.3 1.7 59 331-404 2-60 (62)
7 2vnf_A ING 4, P29ING4, inhibit 99.7 7.8E-18 2.7E-22 129.6 1.8 57 332-403 2-58 (60)
8 3c6w_A P28ING5, inhibitor of g 99.7 8.2E-18 2.8E-22 129.2 1.7 54 335-403 4-57 (59)
9 1wew_A DNA-binding family prot 99.5 2.5E-15 8.4E-20 121.0 3.5 63 331-406 7-74 (78)
10 2rsd_A E3 SUMO-protein ligase 99.4 3.5E-14 1.2E-18 111.4 3.3 60 332-404 2-65 (68)
11 2k16_A Transcription initiatio 99.4 4.1E-14 1.4E-18 112.5 2.4 55 338-408 16-72 (75)
12 3kqi_A GRC5, PHD finger protei 99.4 3.7E-14 1.3E-18 113.2 1.8 57 336-406 6-63 (75)
13 1wee_A PHD finger family prote 99.3 3.6E-13 1.2E-17 106.6 3.8 56 336-405 12-67 (72)
14 1wep_A PHF8; structural genomi 99.3 2.8E-13 9.6E-18 109.0 2.8 55 338-406 10-65 (79)
15 3o70_A PHD finger protein 13; 99.3 5.5E-13 1.9E-17 105.0 2.7 56 333-404 12-67 (68)
16 1we9_A PHD finger family prote 99.3 5.5E-13 1.9E-17 102.9 2.5 55 337-405 3-59 (64)
17 2lv9_A Histone-lysine N-methyl 99.3 2E-12 6.9E-17 108.3 4.5 53 336-404 24-76 (98)
18 3o7a_A PHD finger protein 13 v 99.3 8.7E-13 3E-17 98.3 1.4 49 339-403 3-51 (52)
19 1wem_A Death associated transc 99.2 4.9E-13 1.7E-17 106.7 -0.7 56 335-406 12-72 (76)
20 2xb1_A Pygopus homolog 2, B-ce 99.1 1E-11 3.5E-16 105.3 2.2 52 353-406 4-63 (105)
21 3kv5_D JMJC domain-containing 99.1 6.6E-12 2.3E-16 131.4 0.6 57 336-406 33-90 (488)
22 2kgg_A Histone demethylase jar 99.1 7.1E-12 2.4E-16 93.5 -0.5 39 362-402 14-52 (52)
23 1xwh_A Autoimmune regulator; P 99.1 3.7E-11 1.2E-15 93.7 3.3 52 354-410 10-61 (66)
24 2l5u_A Chromodomain-helicase-D 99.1 6.1E-11 2.1E-15 91.2 3.6 39 363-404 20-58 (61)
25 3kv4_A PHD finger protein 8; e 99.1 7.7E-12 2.6E-16 129.6 -2.1 58 338-409 3-61 (447)
26 1f62_A Transcription factor WS 99.0 7.5E-11 2.6E-15 87.1 2.7 47 354-403 2-49 (51)
27 2ri7_A Nucleosome-remodeling f 99.0 1.7E-11 5.8E-16 111.0 -1.5 56 336-405 4-60 (174)
28 2puy_A PHD finger protein 21A; 99.0 1.3E-10 4.4E-15 88.8 2.3 50 353-407 6-55 (60)
29 2e6r_A Jumonji/ARID domain-con 99.0 3.1E-10 1.1E-14 94.1 4.3 41 363-406 28-68 (92)
30 3asl_A E3 ubiquitin-protein li 99.0 3.3E-10 1.1E-14 89.6 4.0 44 357-403 23-68 (70)
31 4gne_A Histone-lysine N-methyl 99.0 2.4E-10 8.4E-15 97.4 3.4 39 362-403 23-61 (107)
32 2vpb_A Hpygo1, pygopus homolog 98.9 5.4E-11 1.8E-15 92.9 -2.0 39 362-402 20-64 (65)
33 2yql_A PHD finger protein 21A; 98.9 4.9E-10 1.7E-14 84.5 3.2 38 363-403 18-55 (56)
34 1mm2_A MI2-beta; PHD, zinc fin 98.9 5.7E-10 2E-14 85.7 3.6 41 362-405 17-57 (61)
35 2ku3_A Bromodomain-containing 98.9 3.3E-10 1.1E-14 89.9 1.5 39 362-405 29-67 (71)
36 2lri_C Autoimmune regulator; Z 98.9 7.1E-10 2.4E-14 86.8 3.1 40 362-404 20-59 (66)
37 2l43_A N-teminal domain from h 98.8 9.6E-10 3.3E-14 90.5 2.6 41 362-407 38-78 (88)
38 2kwj_A Zinc finger protein DPF 98.8 8.3E-10 2.9E-14 94.4 1.7 58 340-407 52-111 (114)
39 2e6s_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 85.0 5.0 46 355-403 29-76 (77)
40 2yt5_A Metal-response element- 98.8 1.5E-09 5.2E-14 83.9 1.6 42 363-407 20-64 (66)
41 3u5n_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 98.7 3.1 42 362-406 15-56 (207)
42 3shb_A E3 ubiquitin-protein li 98.7 6.7E-09 2.3E-13 83.7 3.9 55 338-403 19-76 (77)
43 3o36_A Transcription intermedi 98.7 9.9E-09 3.4E-13 93.9 5.1 48 354-406 6-53 (184)
44 3pur_A Lysine-specific demethy 98.7 8.1E-09 2.8E-13 108.6 4.0 58 338-406 38-96 (528)
45 3v43_A Histone acetyltransfera 98.7 9.5E-09 3.3E-13 87.5 3.3 56 338-403 53-111 (112)
46 1wev_A Riken cDNA 1110020M19; 98.6 9.2E-09 3.2E-13 84.5 2.5 42 363-407 30-75 (88)
47 1fp0_A KAP-1 corepressor; PHD 98.6 5.8E-08 2E-12 80.1 6.3 41 362-405 33-73 (88)
48 3ask_A E3 ubiquitin-protein li 98.6 2.2E-08 7.6E-13 95.4 3.8 46 355-403 177-224 (226)
49 2ysm_A Myeloid/lymphoid or mix 98.6 2.2E-08 7.7E-13 84.6 3.3 57 338-404 46-104 (111)
50 3lqh_A Histone-lysine N-methyl 98.5 1.3E-08 4.5E-13 94.1 -0.3 49 354-405 4-64 (183)
51 2ro1_A Transcription intermedi 98.4 1.6E-07 5.4E-12 86.8 4.8 48 354-406 4-51 (189)
52 2ysm_A Myeloid/lymphoid or mix 97.8 1E-05 3.5E-10 68.2 3.8 45 355-402 10-55 (111)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 8.1E-06 2.8E-10 69.1 2.3 38 366-406 2-46 (140)
54 2lbm_A Transcriptional regulat 97.7 5.5E-06 1.9E-10 73.9 0.8 40 362-404 71-117 (142)
55 3ql9_A Transcriptional regulat 97.3 1.6E-05 5.5E-10 69.8 -1.6 41 362-405 65-112 (129)
56 2kwj_A Zinc finger protein DPF 97.3 2.5E-05 8.6E-10 66.5 -0.7 37 363-402 20-59 (114)
57 3v43_A Histone acetyltransfera 97.2 5.3E-05 1.8E-09 64.3 -0.2 37 363-402 23-62 (112)
58 3rsn_A SET1/ASH2 histone methy 97.1 0.00036 1.2E-08 64.2 4.9 52 339-404 4-59 (177)
59 4bbq_A Lysine-specific demethy 97.0 0.00024 8.1E-09 60.1 2.3 39 364-405 73-115 (117)
60 1wil_A KIAA1045 protein; ring 93.9 0.013 4.5E-07 48.0 0.6 47 355-404 18-76 (89)
61 2xzr_A Immunoglobulin-binding 90.1 4.9 0.00017 33.6 11.7 94 4-98 8-103 (114)
62 3ghg_A Fibrinogen alpha chain; 87.5 3.4 0.00011 43.7 11.0 95 16-110 60-156 (562)
63 4gne_A Histone-lysine N-methyl 85.2 0.43 1.5E-05 40.3 2.5 29 367-398 70-98 (107)
64 3a1b_A DNA (cytosine-5)-methyl 84.1 0.24 8.3E-06 44.7 0.5 49 354-405 81-135 (159)
65 2pv0_B DNA (cytosine-5)-methyl 82.2 0.35 1.2E-05 49.3 0.9 49 354-405 95-149 (386)
66 2lq6_A Bromodomain-containing 78.3 1 3.4E-05 36.5 2.2 28 355-383 20-47 (87)
67 1deq_A Fibrinogen (alpha chain 75.5 32 0.0011 35.0 12.6 93 16-108 63-157 (390)
68 2v71_A Nuclear distribution pr 74.8 43 0.0015 30.9 12.4 47 4-50 19-65 (189)
69 3k1l_B Fancl; UBC, ring, RWD, 74.1 0.87 3E-05 46.2 0.9 40 365-405 325-371 (381)
70 3nmd_A CGMP dependent protein 71.0 14 0.00046 29.3 6.9 49 68-116 23-71 (72)
71 3lhp_S 4E10_D0_1ISEA_004_N (T9 70.8 13 0.00043 32.3 7.3 33 76-108 88-120 (123)
72 3ghg_A Fibrinogen alpha chain; 70.5 10 0.00036 40.0 8.0 14 95-108 134-147 (562)
73 2qyw_A Vesicle transport throu 69.8 42 0.0014 27.5 10.1 83 23-108 15-101 (102)
74 1m1j_C Fibrinogen gamma chain; 69.6 34 0.0012 35.0 11.5 30 4-33 25-55 (409)
75 1deq_A Fibrinogen (alpha chain 62.8 65 0.0022 32.7 11.7 42 69-110 111-152 (390)
76 1vyx_A ORF K3, K3RING; zinc-bi 60.4 0.65 2.2E-05 34.8 -2.5 27 377-405 31-57 (60)
77 1v87_A Deltex protein 2; ring- 60.3 1.2 4.1E-05 36.4 -1.1 34 374-408 61-95 (114)
78 1nfn_A Apolipoprotein E3; lipi 58.8 1.1E+02 0.0036 27.8 12.1 121 3-123 32-174 (191)
79 1m1j_A Fibrinogen alpha subuni 58.4 81 0.0028 32.9 11.7 54 57-110 104-157 (491)
80 1wig_A KIAA1808 protein; LIM d 58.1 9 0.00031 28.9 3.6 49 355-408 8-66 (73)
81 2ckl_B Ubiquitin ligase protei 57.4 2 6.8E-05 37.5 -0.3 45 354-405 56-100 (165)
82 2ke4_A CDC42-interacting prote 57.0 52 0.0018 27.1 8.3 48 61-110 40-87 (98)
83 2fiy_A Protein FDHE homolog; F 54.9 4.8 0.00016 39.7 2.0 14 365-380 207-220 (309)
84 3fx7_A Putative uncharacterize 54.6 79 0.0027 26.1 8.9 79 15-101 8-86 (94)
85 3oja_B Anopheles plasmodium-re 54.3 51 0.0017 33.8 9.7 16 17-32 457-472 (597)
86 4gfq_A Ribosome-recycling fact 53.9 65 0.0022 30.1 9.4 32 77-108 175-206 (209)
87 2d8s_A Cellular modulator of i 51.7 3.3 0.00011 32.6 0.2 29 377-407 42-70 (80)
88 1wqg_A Ribosome recycling fact 51.4 79 0.0027 28.8 9.4 33 76-108 150-182 (185)
89 1dd5_A Ribosome recycling fact 51.2 80 0.0027 28.8 9.4 33 76-108 150-182 (185)
90 1is1_A Ribosome recycling fact 50.8 82 0.0028 28.7 9.4 33 76-108 150-182 (185)
91 2ecl_A Ring-box protein 2; RNF 50.8 5.5 0.00019 30.8 1.4 65 333-406 9-75 (81)
92 1ise_A Ribosome recycling fact 50.1 83 0.0028 28.7 9.3 33 76-108 150-182 (185)
93 3dpl_R Ring-box protein 1; ubi 49.4 3.8 0.00013 34.0 0.2 59 338-405 36-99 (106)
94 3mq9_A Bone marrow stromal ant 49.3 2.1E+02 0.0072 28.4 13.5 17 93-109 444-460 (471)
95 1m1j_B Fibrinogen beta chain; 48.7 2.1E+02 0.0073 29.6 13.2 14 95-108 178-191 (464)
96 1weq_A PHD finger protein 7; s 48.4 16 0.00053 29.7 3.7 35 365-404 45-79 (85)
97 3l11_A E3 ubiquitin-protein li 48.0 8.6 0.00029 31.3 2.2 29 374-406 33-61 (115)
98 2ysl_A Tripartite motif-contai 47.5 16 0.00054 26.8 3.4 31 374-406 38-68 (73)
99 1m1j_B Fibrinogen beta chain; 46.2 2.5E+02 0.0084 29.2 13.2 19 85-103 175-193 (464)
100 1eh1_A Ribosome recycling fact 46.2 85 0.0029 28.6 8.7 33 76-108 151-183 (185)
101 3ghg_B Fibrinogen beta chain; 45.8 91 0.0031 32.4 9.8 36 73-108 158-193 (461)
102 2efr_A General control protein 45.4 1.6E+02 0.0056 26.1 13.8 49 62-110 68-116 (155)
103 4a0k_B E3 ubiquitin-protein li 45.1 4.5 0.00015 34.4 0.0 61 336-405 45-110 (117)
104 1m1j_A Fibrinogen alpha subuni 44.3 2.1E+02 0.0071 29.9 12.0 11 92-102 146-156 (491)
105 3na7_A HP0958; flagellar bioge 43.7 2E+02 0.0069 26.7 11.3 31 9-39 25-55 (256)
106 1wle_A Seryl-tRNA synthetase; 42.6 1.9E+02 0.0065 30.1 11.8 31 89-119 127-157 (501)
107 4fla_A Regulation of nuclear P 42.1 46 0.0016 29.5 6.1 42 65-106 101-142 (152)
108 3us6_A Histidine-containing ph 41.7 1.4E+02 0.005 25.7 9.3 18 85-102 114-131 (153)
109 3umh_A Amyloid beta A4 protein 41.1 1E+02 0.0035 28.9 8.5 99 3-105 104-209 (211)
110 3lf9_A 4E10_D0_1IS1A_001_C (T1 41.1 1.5E+02 0.0053 25.4 8.9 33 76-108 78-110 (121)
111 2zdi_C Prefoldin subunit alpha 41.1 56 0.0019 28.2 6.4 32 11-42 4-35 (151)
112 2ecw_A Tripartite motif-contai 38.9 7.5 0.00026 29.2 0.4 33 374-407 37-71 (85)
113 2hzl_A Trap-T family sorbitol/ 38.7 1.2E+02 0.0042 29.2 9.2 84 10-97 253-341 (365)
114 2ect_A Ring finger protein 126 38.6 30 0.001 25.8 3.8 29 374-407 36-64 (78)
115 1t1h_A Gspef-atpub14, armadill 37.4 8.6 0.00029 28.9 0.5 46 353-406 9-54 (78)
116 2dq0_A Seryl-tRNA synthetase; 37.3 1.8E+02 0.0063 29.7 10.6 30 90-119 81-110 (455)
117 2yf2_A C4B binding protein; im 35.1 91 0.0031 23.4 5.7 37 13-49 24-60 (65)
118 4ayc_A E3 ubiquitin-protein li 35.0 12 0.0004 31.7 1.0 28 374-406 71-98 (138)
119 2lk0_A RNA-binding protein 5; 34.9 13 0.00045 24.5 1.1 13 393-405 3-15 (32)
120 2yur_A Retinoblastoma-binding 34.0 6 0.0002 29.8 -0.9 29 374-405 34-62 (74)
121 3lrq_A E3 ubiquitin-protein li 33.9 7 0.00024 31.3 -0.5 46 354-406 24-69 (100)
122 3fl2_A E3 ubiquitin-protein li 33.8 6.9 0.00024 32.3 -0.6 30 374-407 70-99 (124)
123 1gs9_A Apolipoprotein E, APOE4 33.8 2E+02 0.0068 25.5 9.0 46 4-49 33-81 (165)
124 1ge9_A Ribosome recycling fact 33.1 1.6E+02 0.0053 26.8 8.3 33 76-108 149-181 (184)
125 1iym_A EL5; ring-H2 finger, ub 33.0 17 0.00057 25.2 1.4 26 374-404 27-52 (55)
126 1ses_A Seryl-tRNA synthetase; 32.8 3.3E+02 0.011 27.4 11.6 30 90-119 76-105 (421)
127 2egp_A Tripartite motif-contai 32.6 19 0.00064 26.8 1.7 33 374-407 30-65 (79)
128 1x4j_A Ring finger protein 38; 32.4 7.5 0.00026 29.1 -0.6 28 374-406 44-71 (75)
129 3ghg_C Fibrinogen gamma chain; 32.3 79 0.0027 32.4 6.8 38 69-106 96-133 (411)
130 4esj_A Type-2 restriction enzy 31.9 19 0.00066 34.6 2.0 17 390-406 51-67 (257)
131 1jm7_B BARD1, BRCA1-associated 31.7 22 0.00077 29.0 2.2 21 379-405 45-65 (117)
132 2ct0_A Non-SMC element 1 homol 31.4 13 0.00045 29.0 0.7 34 367-405 29-62 (74)
133 3qne_A Seryl-tRNA synthetase, 31.3 1.4E+02 0.0048 31.1 8.6 29 89-117 82-110 (485)
134 2d8t_A Dactylidin, ring finger 31.3 17 0.0006 26.8 1.3 29 374-407 33-61 (71)
135 2ct2_A Tripartite motif protei 31.1 9.9 0.00034 28.9 -0.1 31 374-406 37-67 (88)
136 2zqm_A Prefoldin beta subunit 30.7 2.1E+02 0.0071 22.9 12.2 96 13-110 3-109 (117)
137 1vcs_A Vesicle transport throu 29.9 1.2E+02 0.0041 24.7 6.4 75 30-109 12-91 (102)
138 2ecm_A Ring finger and CHY zin 29.9 7.9 0.00027 26.9 -0.8 44 354-404 7-52 (55)
139 1v5n_A PDI-like hypothetical p 29.8 20 0.00069 28.7 1.6 30 355-387 50-79 (89)
140 2e61_A Zinc finger CW-type PWW 29.6 35 0.0012 26.4 2.9 33 364-399 16-48 (69)
141 2kiz_A E3 ubiquitin-protein li 29.5 11 0.00039 27.5 0.0 28 374-406 35-62 (69)
142 3ztg_A E3 ubiquitin-protein li 29.1 6.3 0.00022 30.6 -1.6 29 374-405 32-60 (92)
143 2djb_A Polycomb group ring fin 29.0 12 0.00042 27.7 0.1 29 374-407 34-62 (72)
144 1yvi_A Histidine-containing ph 28.9 2.7E+02 0.0091 23.6 9.7 17 85-101 115-131 (149)
145 3lss_A Seryl-tRNA synthetase; 28.5 2.6E+02 0.0089 29.0 10.0 31 88-118 114-144 (484)
146 4cpa_I Metallocarboxypeptidase 28.1 27 0.00091 24.0 1.6 27 354-386 4-30 (38)
147 1bor_A Transcription factor PM 28.0 35 0.0012 24.2 2.5 21 379-406 28-48 (56)
148 2ea6_A Ring finger protein 4; 27.4 4.8 0.00016 29.2 -2.4 28 374-406 40-67 (69)
149 3nw0_A Non-structural maintena 27.4 18 0.00062 34.0 1.0 33 367-404 194-226 (238)
150 2y43_A E3 ubiquitin-protein li 27.0 19 0.00063 28.4 0.9 28 374-406 41-68 (99)
151 2ecv_A Tripartite motif-contai 26.9 7 0.00024 29.4 -1.6 33 374-407 37-71 (85)
152 2ckl_A Polycomb group ring fin 26.8 15 0.0005 29.5 0.2 46 353-406 16-61 (108)
153 3mq9_A Bone marrow stromal ant 26.8 1.4E+02 0.0049 29.6 7.6 37 74-110 432-468 (471)
154 1jm7_A BRCA1, breast cancer ty 26.8 13 0.00043 29.8 -0.2 31 374-406 39-69 (112)
155 2k1p_A Zinc finger RAN-binding 26.5 22 0.00076 23.5 1.0 14 392-405 3-16 (33)
156 2l0b_A E3 ubiquitin-protein li 26.5 14 0.00048 28.9 0.1 27 374-405 61-87 (91)
157 2ecn_A Ring finger protein 141 26.4 8.3 0.00028 28.3 -1.3 28 374-406 32-59 (70)
158 1tt9_A Formimidoyltransferase- 26.3 4.4E+02 0.015 27.8 11.3 78 16-93 389-468 (541)
159 1yke_B RNA polymerase II holoe 26.3 3.1E+02 0.011 24.0 8.8 57 41-97 71-129 (151)
160 2c2j_A DNA-binding stress resp 26.1 3.8E+02 0.013 24.5 10.1 85 26-110 83-189 (211)
161 2clb_A DPS-like protein; DI-ir 25.8 3.4E+02 0.012 23.9 9.8 86 26-111 61-170 (188)
162 1m1j_C Fibrinogen gamma chain; 25.8 1.4E+02 0.0049 30.4 7.3 27 76-102 103-129 (409)
163 2ecy_A TNF receptor-associated 25.4 11 0.00038 27.4 -0.7 29 374-406 33-61 (66)
164 2ld6_A Chemotaxis protein CHEA 25.1 2.3E+02 0.0077 23.8 7.5 94 3-97 5-102 (139)
165 3swh_A MUNC13-1, protein UNC-1 25.0 2.4E+02 0.0083 27.7 8.7 21 81-101 169-189 (341)
166 2lh0_A Histone chaperone RTT10 24.3 47 0.0016 26.0 2.6 32 11-42 9-40 (70)
167 1e4u_A Transcriptional repress 24.0 17 0.0006 28.2 0.2 30 374-407 33-62 (78)
168 1z6u_A NP95-like ring finger p 24.0 16 0.00053 31.8 -0.1 30 374-407 96-125 (150)
169 3oja_B Anopheles plasmodium-re 23.4 5.9E+02 0.02 25.7 12.5 31 14-44 461-491 (597)
170 1x62_A C-terminal LIM domain p 23.3 58 0.002 24.5 3.1 41 360-405 23-72 (79)
171 1chc_A Equine herpes virus-1 r 23.3 14 0.00048 26.8 -0.5 28 374-406 24-51 (68)
172 4dac_A Computationally designe 23.2 76 0.0026 20.2 2.9 21 89-109 5-25 (28)
173 2avr_X Adhesion A; antiparalle 23.0 3.6E+02 0.012 23.0 10.5 88 19-106 5-103 (119)
174 3onj_A T-snare VTI1; helix, HA 22.6 3E+02 0.01 22.0 11.2 80 26-109 4-90 (97)
175 2xs1_A Programmed cell death 6 22.4 7.3E+02 0.025 26.5 12.7 72 33-106 629-702 (704)
176 2zzv_A ABC transporter, solute 22.2 2.2E+02 0.0075 27.3 7.7 32 10-41 260-292 (361)
177 1s24_A Rubredoxin 2; electron 22.2 60 0.002 26.4 3.0 11 394-404 67-77 (87)
178 2k0a_A PRE-mRNA-splicing facto 21.8 14 0.00049 31.1 -0.7 52 355-408 32-85 (109)
179 3fs3_A Nucleosome assembly pro 21.6 1.1E+02 0.0037 30.9 5.4 34 7-40 40-73 (359)
180 1x64_A Alpha-actinin-2 associa 21.6 55 0.0019 25.2 2.6 41 360-405 33-82 (89)
181 1dx8_A Rubredoxin; electron tr 20.6 87 0.003 24.2 3.6 13 393-405 38-50 (70)
182 1g25_A CDK-activating kinase a 20.5 21 0.0007 25.8 -0.1 30 374-407 26-55 (65)
183 2dq3_A Seryl-tRNA synthetase; 20.5 1.4E+02 0.0046 30.3 6.0 21 90-110 80-100 (425)
184 2kn9_A Rubredoxin; metalloprot 20.4 71 0.0024 25.6 3.1 12 394-405 59-70 (81)
185 3ghg_C Fibrinogen gamma chain; 20.2 5E+02 0.017 26.5 10.0 28 61-88 60-87 (411)
186 2co8_A NEDD9 interacting prote 20.2 75 0.0026 24.2 3.1 13 393-405 63-75 (82)
No 1
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=99.96 E-value=7.5e-29 Score=209.62 Aligned_cols=102 Identities=27% Similarity=0.464 Sum_probs=98.3
Q ss_pred CccHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHH
Q psy8390 1 MLYLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKI 80 (422)
Q Consensus 1 m~YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV 80 (422)
++|||||+|+|++||.||+|+|++||+||.+++++++++++++++|++..++.+++++...+..|++.|.++++++||||
T Consensus 3 ~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv 82 (104)
T 4afl_A 3 GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKV 82 (104)
T ss_dssp CHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8390 81 NLATQIQEFFNKYTRKLEQDIQ 102 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL~ 102 (422)
+||++||||||+|+||||.||+
T Consensus 83 ~lA~~~~dlvdkhirrLD~dla 104 (104)
T 4afl_A 83 QLAMQTYEMVDKHIRRLDTDLA 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999974
No 2
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.75 E-value=1.7e-19 Score=149.71 Aligned_cols=59 Identities=49% Similarity=1.212 Sum_probs=47.5
Q ss_pred CCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceeccc-Ccchhc
Q psy8390 333 TGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPL-CLEKMA 406 (422)
Q Consensus 333 ~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~-C~~~~k 406 (422)
++.++++.+||+|+ ++++|+||+||+|+|+++|||+.||||+ .+|.++||||. |....+
T Consensus 19 ~~~~~~~~~yCiC~-------------~~~~g~MI~CD~c~C~~eWfH~~CVgl~--~~p~~~W~Cp~cC~~~~k 78 (90)
T 2jmi_A 19 EGNNNQEEVYCFCR-------------NVSYGPMVACDNPACPFEWFHYGCVGLK--QAPKGKWYCSKDCKEIAN 78 (90)
T ss_dssp -----CCSCCSTTT-------------CCCSSSEECCCSSSCSCSCEETTTSSCS--SCTTSCCCSSHHHHHHHH
T ss_pred CCCCCCCCcEEEeC-------------CCCCCCEEEecCCCCccccCcCccCCCC--cCCCCCccCChhhcchhh
Confidence 44566788999999 4567899999999999899999999998 78889999999 875443
No 3
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.74 E-value=1.4e-18 Score=144.51 Aligned_cols=61 Identities=44% Similarity=1.243 Sum_probs=52.6
Q ss_pred CCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 332 ~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
+...|+++.+||+|+ ++++|+||+||+|+|+++|||+.||+|+ ..|.++||||.|....++
T Consensus 28 ~~~~d~~e~~yCiC~-------------~~~~g~MI~CD~~dC~~~WfH~~CVgl~--~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 28 DMPVDPNEPTYCLCH-------------QVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp SCCCCSCCCBCSTTC-------------CBCCSCCCCCSCSSCSCCCCCSTTTTCS--SCCCSSCCCTTTCCCCSS
T ss_pred cCCcCCCCCcEEECC-------------CCCCCCEeEecCCCCCCCCEecccCCcC--cCCCCCEECcCccCcCCc
Confidence 567788999999999 4467899999998898899999999998 778899999999765443
No 4
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-19 Score=141.85 Aligned_cols=64 Identities=47% Similarity=1.188 Sum_probs=54.5
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhccccccCCC
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHYG 414 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r~~~~~~ 414 (422)
++++.+||+|+ ++++|+||+||+|+||.+|||+.||+|+ ..|.++||||.|....+++++++..
T Consensus 2 ~~~~~~yC~C~-------------~~~~g~MI~CD~cdC~~~WfH~~Cvgl~--~~p~~~w~Cp~C~~~~~k~~~~~~~ 65 (70)
T 1x4i_A 2 SSGSSGYCICN-------------QVSYGEMVGCDNQDCPIEWFHYGCVGLT--EAPKGKWYCPQCTAAMKRRGSRHKS 65 (70)
T ss_dssp CCSCCCCSTTS-------------CCCCSSEECCSCTTCSCCCEEHHHHTCS--SCCSSCCCCHHHHHHHHHHHTTCCC
T ss_pred CCCCCeEEEcC-------------CCCCCCEeEeCCCCCCccCCcccccccC--cCCCCCEECCCCCcccccccccccC
Confidence 46788999999 4567899999999998899999999998 6788999999999888766655433
No 5
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.73 E-value=2e-18 Score=137.27 Aligned_cols=60 Identities=45% Similarity=1.262 Sum_probs=51.5
Q ss_pred CCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 332 ~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
+.+.|+++..||+|+ ++++|+||+||+++|+++|||+.||+|+ .+|.++||||.|....+
T Consensus 8 ~~~~d~~~~~~C~C~-------------~~~~g~MI~CD~~~C~~~wfH~~Cvgl~--~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 8 DMPVDPNEPTYCLCH-------------QVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCCCTTSCCCSTTC-------------CCSCSSEECCSCSSCSCCCEETTTTTCS--SCCSSCCCCTTTSSCSS
T ss_pred ccccCCCCCCEEECC-------------CCCCCCEeEeeCCCCCCccEecccCCcC--cCCCCCEECCCCCcccc
Confidence 566778889999999 4467899999998898789999999998 78889999999976544
No 6
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.73 E-value=5e-19 Score=137.29 Aligned_cols=59 Identities=49% Similarity=1.287 Sum_probs=45.8
Q ss_pred cCCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 331 ~~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
++.+.|+++.+||+|+ ++++|+||+||+|+|+++|||+.|||++ ..|.++||||.|...
T Consensus 2 ~~~~~d~~e~~yC~C~-------------~~~~g~MI~CD~c~C~~~WfH~~Cvgl~--~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 2 SEFAIDPNEPTYCLCN-------------QVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKWYCPKCRGD 60 (62)
T ss_dssp --------CCEETTTT-------------EECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHTC
T ss_pred CccccCCCCCcEEECC-------------CCCCCCeeeeeCCCCCcccEecccCCcC--cCCCCCEECcCcccC
Confidence 4677888999999999 4467899999998898899999999998 778899999999653
No 7
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.67 E-value=7.8e-18 Score=129.61 Aligned_cols=57 Identities=47% Similarity=1.327 Sum_probs=45.0
Q ss_pred CCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 332 ~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
+.+.|+++..||+|+ ++++|+||+||+|+|+++|||+.|||++ .+|.++||||.|..
T Consensus 2 ~~~~d~~e~~~C~C~-------------~~~~g~mi~CD~cdC~~~wfH~~Cvgl~--~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 2 DMPVDPNEPTYCLCH-------------QVSYGEMIGCDNPDCSIEWFHFACVGLT--TKPRGKWFCPRCSQ 58 (60)
T ss_dssp -------CCEETTTT-------------EECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHC
T ss_pred CcccCCCCCCEEECC-------------CcCCCCEEEeCCCCCCCceEehhcCCCC--cCCCCCEECcCccC
Confidence 456778899999999 4467899999998897789999999998 78889999999965
No 8
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.67 E-value=8.2e-18 Score=129.18 Aligned_cols=54 Identities=50% Similarity=1.408 Sum_probs=44.8
Q ss_pred CCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 335 YGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 335 ~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
.|+++..||+|+ ++++|+||+||+++|+++|||+.|||++ ..|.++||||.|..
T Consensus 4 ~d~~e~~yC~C~-------------~~~~g~mi~CD~~~C~~~wfH~~Cvgl~--~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 4 RGSNEPTYCLCH-------------QVSYGEMIGCDNPDCPIEWFHFACVDLT--TKPKGKWFCPRCVQ 57 (59)
T ss_dssp ----CCEETTTT-------------EECCSEEEECSCTTCSSCEEETGGGTCS--SCCSSCCCCHHHHC
T ss_pred cCCCCCcEEECC-------------CCCCCCeeEeeCCCCCCCCEecccCCcc--cCCCCCEECcCccC
Confidence 467889999999 4467899999998898789999999998 78889999999964
No 9
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.53 E-value=2.5e-15 Score=121.00 Aligned_cols=63 Identities=21% Similarity=0.589 Sum_probs=48.9
Q ss_pred cCCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCC-----CCCceecccCcchh
Q psy8390 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNP-----PKGKWYCPLCLEKM 405 (422)
Q Consensus 331 ~~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~-----p~~~W~Cp~C~~~~ 405 (422)
+++..++++.+||+|+.+ .++|+||+||+..|+ .|||+.||||+...+ ..++||||.|....
T Consensus 7 ~dd~~~~~~~~~CiC~~~------------~~~g~MI~CD~~~C~-~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNS------------LETDSMIQCEDPRCH-VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCSSSCCCCCCCSSCCC------------CCCSCEEECSSTTTC-CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cccccCCCCCEEeECCCc------------CCCCCEEEECCccCC-ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 356678889999999943 256899999966687 699999999984432 24789999998654
Q ss_pred c
Q psy8390 406 A 406 (422)
Q Consensus 406 k 406 (422)
+
T Consensus 74 ~ 74 (78)
T 1wew_A 74 G 74 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 10
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.44 E-value=3.5e-14 Score=111.41 Aligned_cols=60 Identities=25% Similarity=0.678 Sum_probs=46.5
Q ss_pred CCCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC----CCceecccCcch
Q psy8390 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP----KGKWYCPLCLEK 404 (422)
Q Consensus 332 ~~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p----~~~W~Cp~C~~~ 404 (422)
++..++++.+||+|+.+ .++|+||+||+..|. .|||+.|||++..... .++||||.|+.+
T Consensus 2 ~d~~~~e~~v~C~C~~~------------~~~g~mI~CD~~~C~-~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 2 SDSFQPEAKVRCICSST------------MVNDSMIQCEDQRCQ-VWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CSCCCSSCEECCTTCCC------------SCCSCEEECSCTTTC-EEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCcCCCCCEEeECCCC------------cCCCCEEEECCCCCC-CeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 45677888999999843 356899999976686 8999999999743221 257999999754
No 11
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.41 E-value=4.1e-14 Score=112.45 Aligned_cols=55 Identities=38% Similarity=1.041 Sum_probs=43.3
Q ss_pred CCCcee-EeccccccccchhcccccCCC-ceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhccc
Q psy8390 338 DEPRYC-RCNEQAHYNFYTIFCSQVAFG-VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAAS 408 (422)
Q Consensus 338 ~e~~yC-iC~~~~~~~~y~~~C~~~~~g-~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r 408 (422)
++..|| +|+. ++++ +||+||+ |+ .|||+.||+++...++.++||||.|.....++
T Consensus 16 ~~~~~C~~C~~-------------~~~~~~mi~CD~--C~-~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNK-------------PDDGSPMIGCDD--CD-DWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTB-------------CCSSCCEEECSS--SS-SEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCC-------------CCCCCCEEEcCC--CC-cccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 455677 6874 3444 8999996 86 89999999999766777999999998776543
No 12
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.41 E-value=3.7e-14 Score=113.18 Aligned_cols=57 Identities=30% Similarity=0.815 Sum_probs=44.4
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchhc
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~k 406 (422)
.+++.+||+|+.+ ..++++||+||. |. +|||+.|||++...++ .+.|+||.|.....
T Consensus 6 ~~~~~~yCiC~~~-----------~~~~~~MI~Cd~--C~-~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 6 MATVPVYCVCRLP-----------YDVTRFMIECDA--CK-DWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp TCCCCEETTTTEE-----------CCTTSCEEECTT--TC-CEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCCCeeEEECCCc-----------CCCCCCEEEcCC--CC-CCEecccccccccccCCCCEEECCCCcccCC
Confidence 4577899999965 123579999996 85 9999999999855444 37899999987643
No 13
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.35 E-value=3.6e-13 Score=106.60 Aligned_cols=56 Identities=29% Similarity=0.624 Sum_probs=42.7
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
++++.+||+|+.+ ..++.+||+||. | ..|||+.||+++......++|+||.|..+.
T Consensus 12 ~~~~~~~C~C~~~-----------~~~g~~mI~Cd~--C-~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 12 VDNWKVDCKCGTK-----------DDDGERMLACDG--C-GVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SCSSEECCTTCCC-----------SCCSSCEEECSS--S-CEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCCcceEeeCCCc-----------cCCCCcEEECCC--C-CCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4467799999954 112348999996 7 499999999998544456899999997643
No 14
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.34 E-value=2.8e-13 Score=109.03 Aligned_cols=55 Identities=31% Similarity=0.777 Sum_probs=42.7
Q ss_pred CCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchhc
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~k 406 (422)
++.+||+|+.+ ..++++||+||. |. +|||+.||+++..... .++|+||.|.....
T Consensus 10 ~~~~~C~C~~~-----------~d~~~~MIqCd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYCLCRQP-----------YNVNHFMIECGL--CQ-DWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCSTTSCS-----------CCSSSCEEEBTT--TC-CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEEEcCCc-----------cCCCCceEEcCC--CC-CcEEeeecCcccccccCCCeEECCCcccccC
Confidence 56799999965 223689999996 85 9999999999843322 47899999987643
No 15
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.31 E-value=5.5e-13 Score=105.00 Aligned_cols=56 Identities=25% Similarity=0.560 Sum_probs=42.4
Q ss_pred CCCCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 333 TGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 333 ~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
...++.+.+||+|+.+ .++++||+||. |. +|||+.|||++...+| ++|+||.|..+
T Consensus 12 ~~~~~~~~~~CiC~~~------------~~~~~MIqCd~--C~-~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 12 ENLYFQGLVTCFCMKP------------FAGRPMIECNE--CH-TWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp --CTTTTCCCSTTCCC------------CTTCCEEECTT--TC-CEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred ccCCCCCceEeECCCc------------CCCCCEEECCC--CC-ccccccccCcCcccCC-CcEECCCCCCC
Confidence 3345577899999954 13458999996 74 9999999999865444 79999999753
No 16
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.30 E-value=5.5e-13 Score=102.85 Aligned_cols=55 Identities=31% Similarity=0.764 Sum_probs=41.9
Q ss_pred CCCCcee-EeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchh
Q psy8390 337 PDEPRYC-RCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKM 405 (422)
Q Consensus 337 ~~e~~yC-iC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~ 405 (422)
.++..|| +|+++ ..++++||+||. |+ .|||+.|||++...+. .++|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~-----------~~~~~~mI~Cd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGES-----------YAADEFWICCDL--CE-MWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCC-----------CCSSSCEEECSS--SC-CEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCc-----------cCCCCCEEEccC--CC-CCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 3566888 89865 224579999995 86 9999999999854433 4789999997643
No 17
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=108.27 Aligned_cols=53 Identities=28% Similarity=0.743 Sum_probs=42.0
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
..++.+.|+|+.+ .++|+||+||. |+ .|||+.||+++...+| +.||||.|...
T Consensus 24 ~~~d~vrCiC~~~------------~~~~~mi~Cd~--C~-~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 24 YGTDVTRCICGFT------------HDDGYMICCDK--CS-VWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp CCCCBCCCTTSCC------------SCSSCEEEBTT--TC-BEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred CCCCCEEeECCCc------------cCCCcEEEcCC--CC-CcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 3455788999943 24689999996 75 8999999999866666 48999999754
No 18
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.26 E-value=8.7e-13 Score=98.33 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=38.6
Q ss_pred CCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 339 EPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 339 e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
+.+||+|+++ .++++||+||+ |. +|||+.|||++...+| ++|+||.|..
T Consensus 3 d~~~C~C~~~------------~~~~~MI~Cd~--C~-~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKP------------FAGRPMIECNE--CH-TWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCB------------CTTCCEEECTT--TC-CEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred cCeEEEeCCc------------CCCCCEEEcCC--CC-ccccccccCCCcccCC-CcEECcCCCC
Confidence 4589999954 13459999996 74 9999999999854344 7999999964
No 19
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.25 E-value=4.9e-13 Score=106.69 Aligned_cols=56 Identities=34% Similarity=0.895 Sum_probs=41.4
Q ss_pred CCCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCC-----CCCceecccCcchhc
Q psy8390 335 YGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNP-----PKGKWYCPLCLEKMA 406 (422)
Q Consensus 335 ~d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~-----p~~~W~Cp~C~~~~k 406 (422)
+|++ .+||+|+++ .++++||+||. |+ .|||+.|||++.... +..+|+||.|.....
T Consensus 12 ~d~~-~~~C~C~~~------------~~~~~MI~Cd~--C~-~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 12 YDPN-ALYCICRQP------------HNNRFMICCDR--CE-EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCTT-CCCSTTCCC------------CCSSCEEECSS--SC-CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred cCCC-CCEEECCCc------------cCCCCEEEeCC--CC-CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3444 599999954 12469999996 85 999999999983221 357899999986543
No 20
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.13 E-value=1e-11 Score=105.32 Aligned_cols=52 Identities=25% Similarity=0.731 Sum_probs=40.1
Q ss_pred cchhccccc--CCCceeeecCCCCCCcceecccCCcCCCC------CCCCceecccCcchhc
Q psy8390 353 FYTIFCSQV--AFGVMVACDSKNCPYEWYHCECVGIAPDN------PPKGKWYCPLCLEKMA 406 (422)
Q Consensus 353 ~y~~~C~~~--~~g~MI~CD~c~C~~~WfH~~CVgi~~~~------~p~~~W~Cp~C~~~~k 406 (422)
|.|.+|.++ ++++||+||+ .|+ +|||+.||||+... .|.++|+||.|.....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd-~C~-~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEA-SCQ-KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTT-TTC-CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecC-Ccc-cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457777676 5679999984 486 99999999998321 3568999999987543
No 21
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.12 E-value=6.6e-12 Score=131.39 Aligned_cols=57 Identities=30% Similarity=0.789 Sum_probs=43.9
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchhc
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~k 406 (422)
..++.+||+|+++ ...+++||+||. |+ +|||+.|||++..... .++|+||.|.....
T Consensus 33 ~~~~~~yC~C~~~-----------~d~~~~MIqCd~--C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 33 PPPPPVYCVCRQP-----------YDVNRFMIECDI--CK-DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCCCEETTTTEE-----------CCTTSCEEEBTT--TC-CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCCCeEEeCCCc-----------CCCCCCeEEccC--CC-CceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3467799999965 223689999996 85 9999999999843333 37899999987643
No 22
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.09 E-value=7.1e-12 Score=93.46 Aligned_cols=39 Identities=33% Similarity=0.842 Sum_probs=30.4
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~ 402 (422)
++++||+||+ .|+ +|||+.|||++......++|+||.|.
T Consensus 14 ~~~~mI~Cd~-~C~-~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 14 DKVDWVQCDG-GCD-EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCEEECTT-TTC-CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCcEEEeCC-CCC-ccCcccccCCCccccCCCCEECCCCC
Confidence 3568999995 486 99999999998433334889999994
No 23
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.09 E-value=3.7e-11 Score=93.67 Aligned_cols=52 Identities=27% Similarity=0.726 Sum_probs=40.3
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhccccc
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKA 410 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r~~ 410 (422)
+|.+|+ .+|.||.||. |+ .|||+.|++++...+|.+.|||+.|.....++..
T Consensus 10 ~C~vC~--~~g~ll~CD~--C~-~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~~ 61 (66)
T 1xwh_A 10 ECAVCR--DGGELICCDG--CP-RAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQ 61 (66)
T ss_dssp SBSSSS--CCSSCEECSS--CC-CEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCCC
T ss_pred CCccCC--CCCCEEEcCC--CC-hhhcccccCCCcCcCCCCCeECccccCcccccCc
Confidence 444553 3579999996 87 6999999998777889999999999866544433
No 24
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=6.1e-11 Score=91.21 Aligned_cols=39 Identities=38% Similarity=1.021 Sum_probs=34.2
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
+|.||.||. |+ .|||+.|++++...+|.++||||.|...
T Consensus 20 ~g~ll~CD~--C~-~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 20 GGEIILCDT--CP-RAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSEEECSS--SS-CEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCcEEECCC--CC-hhhhhhccCCCCCCCCCCceECcccccc
Confidence 579999995 87 6999999999877889999999999753
No 25
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.06 E-value=7.7e-12 Score=129.63 Aligned_cols=58 Identities=29% Similarity=0.739 Sum_probs=44.5
Q ss_pred CCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchhcccc
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKMAASK 409 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~k~r~ 409 (422)
...+||+|+++ ..++++||+||. |+ +|||+.|||++....+ .++|+||.|......+.
T Consensus 3 ~~~~yCiC~~~-----------~d~~~~MIqCD~--C~-~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~ 61 (447)
T 3kv4_A 3 SVPVYCLCRLP-----------YDVTRFMIECDM--CQ-DWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSI 61 (447)
T ss_dssp CCCEETTTTEE-----------CCTTSCEEECTT--TC-CEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCE
T ss_pred CCCeEEeCCCc-----------CCCCCCeEEcCC--CC-cccccccCCcCcccccCCCEEECCCCccccCCch
Confidence 56789999965 223689999996 75 9999999999843333 37899999988765443
No 26
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.03 E-value=7.5e-11 Score=87.06 Aligned_cols=47 Identities=28% Similarity=0.695 Sum_probs=38.4
Q ss_pred chhcccccC-CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 354 YTIFCSQVA-FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 354 y~~~C~~~~-~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
+|.+|++.. .+.||.||. |+ .|||+.|++++...+|.+.|||+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDE--CN-KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTT--TC-CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCC--CC-hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 466675543 469999996 86 799999998777789999999999965
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.02 E-value=1.7e-11 Score=110.96 Aligned_cols=56 Identities=32% Similarity=0.841 Sum_probs=41.6
Q ss_pred CCCCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCC-CCCCceecccCcchh
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN-PPKGKWYCPLCLEKM 405 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~-~p~~~W~Cp~C~~~~ 405 (422)
++++.+||+|+.+ ..++++||+||. |+ .|||..|||++... ...++|+||.|....
T Consensus 4 ~~~~~~~C~C~~~-----------~~~~~~mi~Cd~--C~-~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 4 GSDTKLYCICKTP-----------EDESKFYIGCDR--CQ-NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp ---CCEETTTTEE-----------CCTTSCEEECTT--TC-CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCCcEeeCCCC-----------CCCCCCEeECCC--CC-chhChhhcCCchhhccCccCeecCCCcchh
Confidence 3467789999965 224679999996 86 99999999987322 236899999998754
No 28
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=88.78 Aligned_cols=50 Identities=32% Similarity=0.868 Sum_probs=40.7
Q ss_pred cchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 353 FYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 353 ~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
.+|.+|+. .|.||.||. |+ .|||+.|++++...+|.+.||||.|.....+
T Consensus 6 ~~C~vC~~--~g~ll~Cd~--C~-~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 6 DFCSVCRK--SGQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp SSCTTTCC--CSSCEECSS--SS-CEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCcCCCC--CCcEEEcCC--CC-cCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 35666644 479999995 87 8999999998777889999999999876654
No 29
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.1e-10 Score=94.10 Aligned_cols=41 Identities=29% Similarity=0.709 Sum_probs=35.3
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.+.||.||. |+ .|||+.||+++...+|.++||||.|.....
T Consensus 28 ~~~ll~CD~--C~-~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 28 DDKLLFCDG--CD-DNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp GGGCEECTT--TC-CEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCCEEEcCC--CC-chhccccCCCCcccCCCCCcCCccCcCccc
Confidence 368999996 86 699999999887789999999999987543
No 30
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.96 E-value=3.3e-10 Score=89.55 Aligned_cols=44 Identities=27% Similarity=0.751 Sum_probs=36.8
Q ss_pred ccccc-CCCceeeecCCCCCCcceecccCCcCCCCCCCC-ceecccCcc
Q psy8390 357 FCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKG-KWYCPLCLE 403 (422)
Q Consensus 357 ~C~~~-~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~-~W~Cp~C~~ 403 (422)
+|++. +++.||.||. |+ .|||+.|++++...+|.+ .||||.|..
T Consensus 23 ~C~~~~~~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCCSCGGGEEECTT--TC-CEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCcCCCCCEEEcCC--CC-CceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56654 3579999996 86 789999999887789999 999999974
No 31
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.96 E-value=2.4e-10 Score=97.43 Aligned_cols=39 Identities=44% Similarity=1.002 Sum_probs=33.7
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
++|+||+||+..|+ .|||+.||++. .+|.|+||||.|.-
T Consensus 23 ~~G~ll~CD~~~Cp-~~fH~~Cl~L~--~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 23 DGGELVMCDKKDCP-KAYHLLCLNLT--QPPYGKWECPWHQC 61 (107)
T ss_dssp CCSEEEECCSTTCC-CEECTGGGTCS--SCCSSCCCCGGGBC
T ss_pred CCCcEeEECCCCCC-cccccccCcCC--cCCCCCEECCCCCC
Confidence 56899999965698 59999999987 89999999998753
No 32
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.92 E-value=5.4e-11 Score=92.94 Aligned_cols=39 Identities=23% Similarity=0.809 Sum_probs=31.2
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCC------CCCCceecccCc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDN------PPKGKWYCPLCL 402 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~------~p~~~W~Cp~C~ 402 (422)
+..+||+||+ .|. .|||+.||||+.+. .|.+.|+||.|.
T Consensus 20 ~~~~mI~CD~-~C~-~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 20 DDQDAILCEA-SCQ-KWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTSCEEEBTT-TTC-CEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCCeEeccc-Ccc-ccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4469999994 485 99999999998432 366799999995
No 33
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=4.9e-10 Score=84.49 Aligned_cols=38 Identities=37% Similarity=1.006 Sum_probs=33.4
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
.|.||.||. |+ .|||+.|++++...+|.+.||||.|..
T Consensus 18 ~g~ll~Cd~--C~-~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 18 SGQLLMCDT--CS-RVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCEECSS--SS-CEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCeEEEcCC--CC-cceECccCCCCcCCCCCCceEChhhhC
Confidence 479999995 87 899999999877789999999999963
No 34
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.91 E-value=5.7e-10 Score=85.74 Aligned_cols=41 Identities=34% Similarity=0.902 Sum_probs=34.9
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
.+|.||.||. |+ .|||+.|++++...+|.++|||+.|....
T Consensus 17 ~~g~ll~Cd~--C~-~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 17 DGGELLCCDT--CP-SSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CCSSCBCCSS--SC-CCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCEEEcCC--CC-HHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3579999996 87 67999999987778999999999997643
No 35
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.88 E-value=3.3e-10 Score=89.86 Aligned_cols=39 Identities=36% Similarity=0.851 Sum_probs=33.8
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
+.+.||.||. |+ .|||..|++++ .+|.++|||+.|....
T Consensus 29 ~~~~ll~CD~--C~-~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 29 NSNVILFCDM--CN-LAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp SSSCEEECSS--SC-CEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CCCCEEECCC--CC-CccccccCCCC--cCCCCCcCCccCcCcC
Confidence 4579999996 86 69999999998 6899999999997654
No 36
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.88 E-value=7.1e-10 Score=86.82 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
+.|.||+||. |+ .|||+.|+.++...+|.+.|||+.|...
T Consensus 20 ~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 20 DGTDVLRCTH--CA-AAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCEECSS--SC-CEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCeEEECCC--CC-CceecccCCCccCcCCCCCEECccccCC
Confidence 4578999996 86 7899999998877899999999999754
No 37
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.83 E-value=9.6e-10 Score=90.47 Aligned_cols=41 Identities=37% Similarity=0.824 Sum_probs=34.6
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
+.+.||.||. |+ .|||+.|++++ .+|.+.|||+.|......
T Consensus 38 ~~~~ll~CD~--C~-~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 38 NSNVILFCDM--CN-LAVHQECYGVP--YIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp SEEEEEECSS--SC-CCCCHHHHTCS--SCCSSCCCCHHHHHHTTS
T ss_pred CCCCEEECCC--CC-chhhcccCCCC--ccCCCceECccccCccch
Confidence 3469999996 86 68999999998 689999999999876543
No 38
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.81 E-value=8.3e-10 Score=94.44 Aligned_cols=58 Identities=31% Similarity=0.788 Sum_probs=45.8
Q ss_pred CceeE-eccccccccchhcccccC-CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 340 PRYCR-CNEQAHYNFYTIFCSQVA-FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 340 ~~yCi-C~~~~~~~~y~~~C~~~~-~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
.|+|. |. +|.+|+... ++.||.||. |+ .|||+.|++++...+|.+.||||.|....+.
T Consensus 52 ~W~C~~C~-------~C~~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 52 KWQCIECK-------SCILCGTSENDDQLLFCDD--CD-RGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp TCCCGGGC-------CCTTTTCCTTTTTEEECSS--SC-CEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCccccC-------ccCcccccCCCCceEEcCC--CC-ccccccccCCCccCCCCCCeECccccchhhc
Confidence 46665 54 466776654 479999996 86 7899999998877899999999999876543
No 39
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=3.8e-09 Score=84.98 Aligned_cols=46 Identities=30% Similarity=0.744 Sum_probs=37.7
Q ss_pred hhccccc-CCCceeeecCCCCCCcceecccCCcCCCCCCCC-ceecccCcc
Q psy8390 355 TIFCSQV-AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKG-KWYCPLCLE 403 (422)
Q Consensus 355 ~~~C~~~-~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~-~W~Cp~C~~ 403 (422)
|.+|+.. +.+.||.||. |+ .|||+.|++++...+|.+ .||||.|..
T Consensus 29 C~vC~~~~~~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 29 CRVCGGKHEPNMQLLCDE--CN-VAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCCCCSTTEEECSS--SC-CEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCcCCcCCCCCEEEcCC--CC-ccccccccCCCccCCCCCCCcCCcCccC
Confidence 4467654 4579999996 87 679999999887789999 999999964
No 40
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.77 E-value=1.5e-09 Score=83.86 Aligned_cols=42 Identities=31% Similarity=0.600 Sum_probs=33.9
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCC--C-CCCceecccCcchhcc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDN--P-PKGKWYCPLCLEKMAA 407 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~--~-p~~~W~Cp~C~~~~k~ 407 (422)
.+.||.||. |+ .|||..|++++... + |.+.|||+.|......
T Consensus 20 ~~~ll~Cd~--C~-~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 20 PNEMVICDK--CG-QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp TBCEEECSS--SC-CEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCEEECCC--CC-hHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 479999996 76 78999999987544 2 7899999999876543
No 41
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.73 E-value=3.6e-09 Score=98.70 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=36.0
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.+|.||+||. |+ .|||..|++++...+|.|.|+||.|....+
T Consensus 15 ~~g~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 15 NGGDLLCCEK--CP-KVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCEEEEECSS--SS-CEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCceEEcCC--CC-CccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4568999996 87 789999999887789999999999987543
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.72 E-value=6.7e-09 Score=83.66 Aligned_cols=55 Identities=31% Similarity=0.783 Sum_probs=42.6
Q ss_pred CCCceeE-eccccccccchhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCc-eecccCcc
Q psy8390 338 DEPRYCR-CNEQAHYNFYTIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGK-WYCPLCLE 403 (422)
Q Consensus 338 ~e~~yCi-C~~~~~~~~y~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~-W~Cp~C~~ 403 (422)
+..++|. |. |.+|++... +.||.||. |+ .+||+.|++++...+|.+. ||||.|..
T Consensus 19 ~~~W~C~~C~--------C~vC~~~~d~~~ll~CD~--C~-~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 19 DVNRLCRVCA--------CHLCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CTTSCCTTTS--------BTTTCCCSCGGGEEECTT--TC-CEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCCc--------CCccCCCCCCcceeEeCC--CC-CccCcccCCCcccCCCCCCceECcCccc
Confidence 3456665 54 567766544 69999996 87 6799999998877899988 99999964
No 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.70 E-value=9.9e-09 Score=93.87 Aligned_cols=48 Identities=27% Similarity=0.787 Sum_probs=39.7
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
+|.+|+ .+|.||+||. |+ .|||..|++++....|.+.|+||.|....+
T Consensus 6 ~C~~C~--~~g~ll~Cd~--C~-~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 6 WCAVCQ--NGGELLCCEK--CP-KVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCTTTC--CCSSCEECSS--SS-CEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred ccccCC--CCCeeeecCC--CC-cccCccccCCCCCCCCCCCEECccccCccc
Confidence 466664 4578999996 87 789999998887789999999999987654
No 44
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.67 E-value=8.1e-09 Score=108.55 Aligned_cols=58 Identities=26% Similarity=0.564 Sum_probs=40.5
Q ss_pred CCCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCC-CCceecccCcchhc
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p-~~~W~Cp~C~~~~k 406 (422)
.+..+|.|.....+ ..++.+||+||+ |. +|||+.|||++...+. .++|+||.|.....
T Consensus 38 ~~~~~~s~kk~~~~--------~n~~~~mI~CD~--C~-~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 38 KEKPLMSKKKSHHH--------KKNDFQWIGCDS--CQ-TWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp ----CCSCCCTTTT--------TTSTTSEEECTT--TC-CEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred hhhccccccccccC--------CCcCCCEEECCC--CC-cCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 34577777654332 235579999996 75 9999999999955444 48999999997543
No 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.65 E-value=9.5e-09 Score=87.52 Aligned_cols=56 Identities=30% Similarity=0.676 Sum_probs=44.3
Q ss_pred CCCceeE-eccccccccchhccccc--CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcc
Q psy8390 338 DEPRYCR-CNEQAHYNFYTIFCSQV--AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403 (422)
Q Consensus 338 ~e~~yCi-C~~~~~~~~y~~~C~~~--~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~ 403 (422)
...|+|. |+ +|.+|+.. +.+.||.||. |+ .+||+.|+.++...+|.+.|||+.|+.
T Consensus 53 ~~~W~C~~C~-------~C~vC~~~~~~~~~ll~Cd~--C~-~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 53 ALRWQCIECK-------TCSSCRDQGKNADNMLFCDS--CD-RGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TSCCCCTTTC-------CBTTTCCCCCTTCCCEECTT--TC-CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccccCC-------ccccccCcCCCccceEEcCC--CC-CeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3456776 66 57778653 2369999996 87 679999998887789999999999975
No 46
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.63 E-value=9.2e-09 Score=84.48 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=34.8
Q ss_pred CCceeeecCCCCCCcceecccCCcCCCC----CCCCceecccCcchhcc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPDN----PPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~~----~p~~~W~Cp~C~~~~k~ 407 (422)
.+.||.||. |+ ..||..|++++... +|.+.|||+.|....++
T Consensus 30 ~~~ll~CD~--C~-~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 30 GNQLVECQE--CH-NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp TCCEEECSS--SC-CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCceEECCC--CC-CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 379999996 76 45999999988653 78999999999877654
No 47
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.59 E-value=5.8e-08 Score=80.14 Aligned_cols=41 Identities=29% Similarity=0.719 Sum_probs=34.6
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
.+|.||+||. |+. .||+.|+.++...+|.+.||||.|....
T Consensus 33 ~~g~LL~CD~--C~~-~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 33 KPGDLVMCNQ--CEF-CFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCEECTT--SSC-EECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCEEECCC--CCC-ceecccCCCCCCCCcCCCcCCccccCCC
Confidence 3568999996 874 5999999887778999999999998653
No 48
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.58 E-value=2.2e-08 Score=95.39 Aligned_cols=46 Identities=26% Similarity=0.700 Sum_probs=34.4
Q ss_pred hhcccccC-CCceeeecCCCCCCcceecccCCcCCCCCCCC-ceecccCcc
Q psy8390 355 TIFCSQVA-FGVMVACDSKNCPYEWYHCECVGIAPDNPPKG-KWYCPLCLE 403 (422)
Q Consensus 355 ~~~C~~~~-~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~-~W~Cp~C~~ 403 (422)
|.+|+..+ .+.||+||. |+ .|||+.|++++...+|.+ .||||.|..
T Consensus 177 C~vC~~~~~~~~lL~CD~--C~-~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 177 CHLCGGRQDPDKQLMCDE--CD-MAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CSSSCCCCC--CCEECSS--SC-CEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CcCCCCCCCCCCeEEcCC--CC-cceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 55676543 479999996 76 689999999887789998 999999964
No 49
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=84.64 Aligned_cols=57 Identities=26% Similarity=0.578 Sum_probs=44.0
Q ss_pred CCCceeE-eccccccccchhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 338 DEPRYCR-CNEQAHYNFYTIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 338 ~e~~yCi-C~~~~~~~~y~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
...|+|. |. +|.+|+.... ..||.||. |+ .|||+.|+.++...+|.+.||||.|...
T Consensus 46 ~~~W~C~~C~-------~C~~C~~~~~~~~ll~Cd~--C~-~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 46 RAGWQCPECK-------VCQNCKQSGEDSKMLVCDT--CD-KGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp STTCCCTTTC-------CCTTTCCCSCCTTEEECSS--SC-CEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred ccCccCCcCC-------cccccCccCCCCCeeECCC--CC-cHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 3456666 55 4667765443 47999996 76 7899999998877899999999999654
No 50
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.49 E-value=1.3e-08 Score=94.15 Aligned_cols=49 Identities=22% Similarity=0.671 Sum_probs=33.9
Q ss_pred chhcccccC-----CCceeeecCCCCCCcceecccCCcCCCC------CC-CCceecccCcchh
Q psy8390 354 YTIFCSQVA-----FGVMVACDSKNCPYEWYHCECVGIAPDN------PP-KGKWYCPLCLEKM 405 (422)
Q Consensus 354 y~~~C~~~~-----~g~MI~CD~c~C~~~WfH~~CVgi~~~~------~p-~~~W~Cp~C~~~~ 405 (422)
||++|+.+. .++||+||. |. .|||..|||++.+. .| ...|+||.|....
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~--C~-~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGK--CD-RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTT--TC-CEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCC--CC-cccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 455554432 236999996 75 89999999997321 12 2479999998653
No 51
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.41 E-value=1.6e-07 Score=86.84 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=39.4
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
+|.+|+ .+|.+|+||. |+ .+||..|+.++...+|.|.|+|+.|.....
T Consensus 4 ~C~~C~--~~g~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 4 ICRVCQ--KPGDLVMCNQ--CE-FCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CBTTTC--CCSSCCCCTT--TC-CBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred cCccCC--CCCceeECCC--CC-chhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 577775 4578999996 87 569999998776688999999999987654
No 52
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.82 E-value=1e-05 Score=68.22 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=33.7
Q ss_pred hhcccccCC-CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCc
Q psy8390 355 TIFCSQVAF-GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402 (422)
Q Consensus 355 ~~~C~~~~~-g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~ 402 (422)
|.+|+.... .+||.|+. |+ ..||..|+++.....+.+.|+|+.|.
T Consensus 10 C~~C~~~g~~~~ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 10 CAVCDSPGDLLDQFFCTT--CG-QHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp BTTTCCCCCTTTSEECSS--SC-CEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CcCCCCCCCCcCCeECCC--CC-CCcChHHhCCccccccccCccCCcCC
Confidence 444434333 47899995 87 56999999998655667899999985
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.77 E-value=8.1e-06 Score=69.09 Aligned_cols=38 Identities=29% Similarity=0.810 Sum_probs=29.7
Q ss_pred eeeecCCCCCCcceecccCCcCC------CCCC-CCceecccCcchhc
Q psy8390 366 MVACDSKNCPYEWYHCECVGIAP------DNPP-KGKWYCPLCLEKMA 406 (422)
Q Consensus 366 MI~CD~c~C~~~WfH~~CVgi~~------~~~p-~~~W~Cp~C~~~~k 406 (422)
||+||. |. +|||..|++++. ...| ...|.||.|.....
T Consensus 2 mi~c~~--c~-~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 2 MMQCGK--CD-RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCSC--CS-SCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cccccc--CC-CccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 999996 74 899999999973 2334 45799999987544
No 54
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.74 E-value=5.5e-06 Score=73.86 Aligned_cols=40 Identities=23% Similarity=0.675 Sum_probs=32.6
Q ss_pred CCCceeeecCCCCCCcceecccCCcCCC-----C--CCCCceecccCcch
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAPD-----N--PPKGKWYCPLCLEK 404 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~~-----~--~p~~~W~Cp~C~~~ 404 (422)
++|++|+||. ||+. ||..|+.++.. . .|.++|+|+.|...
T Consensus 71 ~GG~LlcCD~--Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 71 EGGNLICCDF--CHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CCSSEEECSS--SCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCcEEeCCC--CCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 6789999995 8866 99999996643 1 47899999999854
No 55
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.35 E-value=1.6e-05 Score=69.81 Aligned_cols=41 Identities=22% Similarity=0.627 Sum_probs=31.9
Q ss_pred CCCceeeecCCCCCCcceecccCCcCC-----CCC--CCCceecccCcchh
Q psy8390 362 AFGVMVACDSKNCPYEWYHCECVGIAP-----DNP--PKGKWYCPLCLEKM 405 (422)
Q Consensus 362 ~~g~MI~CD~c~C~~~WfH~~CVgi~~-----~~~--p~~~W~Cp~C~~~~ 405 (422)
++|++|+||. ||+. ||..|+.+.. ..+ |.++|+|+.|....
T Consensus 65 dGG~LlcCd~--Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 65 EGGNLICCDF--CHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CCSEEEECSS--SSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCeeEecCC--Cchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 6789999995 8866 9999998541 122 78999999997653
No 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.32 E-value=2.5e-05 Score=66.55 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=29.3
Q ss_pred CCceeeecCCCCCCcceecccCCcCCC---CCCCCceecccCc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPD---NPPKGKWYCPLCL 402 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~---~~p~~~W~Cp~C~ 402 (422)
.++||.|+. |+ ..||..|+++... .++.+.|+|+.|.
T Consensus 20 ~~~Li~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CG-RSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SC-CEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCeEeCC--CC-CccchhhCCChhhhhhccCCCccCccccC
Confidence 369999996 87 5699999998632 3567899999884
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.18 E-value=5.3e-05 Score=64.28 Aligned_cols=37 Identities=22% Similarity=0.606 Sum_probs=29.0
Q ss_pred CCceeeecCCCCCCcceecccCCcCCC---CCCCCceecccCc
Q psy8390 363 FGVMVACDSKNCPYEWYHCECVGIAPD---NPPKGKWYCPLCL 402 (422)
Q Consensus 363 ~g~MI~CD~c~C~~~WfH~~CVgi~~~---~~p~~~W~Cp~C~ 402 (422)
.++||.|+. |+ .+||..|+++... .++.+.|+|+.|.
T Consensus 23 ~~~Ll~C~~--C~-~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CG-NSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TC-CEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhh--cC-CCCCCchhcCCHHHHHHhhccccccccCC
Confidence 469999996 86 6799999987411 2457899999995
No 58
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.14 E-value=0.00036 Score=64.24 Aligned_cols=52 Identities=17% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCceeEeccccccccchhcccccCCCceeeecCCCCCCcceecccCCcCCCC-CCCC---ceecccCcch
Q psy8390 339 EPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN-PPKG---KWYCPLCLEK 404 (422)
Q Consensus 339 e~~yCiC~~~~~~~~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~-~p~~---~W~Cp~C~~~ 404 (422)
...||.|+.+ ..-+-.||+|+. | ..|||..|+...... .|-. .|.|..|...
T Consensus 4 ~~~yCYCG~~-----------~~~~~~mLqC~~--C-~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 4 QAGSVDEENG-----------RQLGEVELQCGI--C-TKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -------CTT-----------CCTTSCEEECTT--T-CCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred eeeEEEcCCC-----------CCCCceeEeecc--c-cceecHHHhcccccCccccceeEEEEccccCCC
Confidence 4579999965 222459999996 7 489999999855211 3322 4789999864
No 59
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.01 E-value=0.00024 Score=60.08 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=28.2
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCC----CCCceecccCcchh
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNP----PKGKWYCPLCLEKM 405 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~----p~~~W~Cp~C~~~~ 405 (422)
..||+|+. |. .|||..|+++..+.. ..+.|+||.|....
T Consensus 73 ~~m~~C~~--C~-~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 73 KKLMECCI--CN-EIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GSCEEETT--TC-CEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cceEEeee--cC-CeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 37999995 75 899999999874432 23469999998653
No 60
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.86 E-value=0.013 Score=47.95 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=32.0
Q ss_pred hhcccccCCCceeeecCCCCCCcceecccCCcC------------CCCCCCCceecccCcch
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHCECVGIA------------PDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~------------~~~~p~~~W~Cp~C~~~ 404 (422)
|.||..-..+.++.|.- |.+. ||..|+... +...+..-|.|+.|...
T Consensus 18 C~VC~~~t~~~l~pCRv--C~Rv-fH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 18 CDVCEVWTAESLFPCRV--CTRV-FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CTTTCCCCSSCCSSCSS--SSSC-CCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred cCccccccccceecccc--cccc-ccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 55554556789999995 8655 999997632 11123466999999753
No 61
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=90.13 E-value=4.9 Score=33.57 Aligned_cols=94 Identities=4% Similarity=0.084 Sum_probs=64.2
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHH-HHHHHHHHHHHHhhhhhchHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMT-PEQ-RQREYENLLQEYNKPMIDSEEKIN 81 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~-~ee-~~~~~~~I~~~~~ka~elaDEKV~ 81 (422)
+|+.|+.|-.|..+..|.=..|..+|.++......|+...+.+-.+.+... ... .+....+|.+..++..++.+.--+
T Consensus 8 ~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaa 87 (114)
T 2xzr_A 8 IEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEE 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999998877777754333322211111 222 233446888888888888888778
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8390 82 LATQIQEFFNKYTRKLE 98 (422)
Q Consensus 82 LA~q~ydLVDrhiRrLD 98 (422)
|+..+|-+ ++-+-||.
T Consensus 88 Llsk~yh~-ene~ar~k 103 (114)
T 2xzr_A 88 ILSKIYHI-ENEIARIK 103 (114)
T ss_dssp HHHHHHHH-HHHHHHHH
T ss_pred HHHHhhHH-HHHHHHHH
Confidence 88877753 33344443
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.46 E-value=3.4 Score=43.65 Aligned_cols=95 Identities=11% Similarity=0.235 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAAS--MTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKY 93 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s--~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrh 93 (422)
.+|..++.+||..=.+++.....+++.++......+. ....+.+..+.+|.+++++-++..++||+---+...+|..-
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666556666666666666555544322 11234445677788888888888888887666667788888
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8390 94 TRKLEQDIQKFKLELEA 110 (422)
Q Consensus 94 iRrLD~dL~kf~~ELEa 110 (422)
|+.+=.+|++|+-.+.+
T Consensus 140 Ledq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887777665
No 63
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=85.15 E-value=0.43 Score=40.33 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.5
Q ss_pred eeecCCCCCCcceecccCCcCCCCCCCCceec
Q psy8390 367 VACDSKNCPYEWYHCECVGIAPDNPPKGKWYC 398 (422)
Q Consensus 367 I~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~C 398 (422)
+.|.. ||.. ||..|+.......+.+.|+|
T Consensus 70 ~~C~~--Cp~s-fC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 70 SFCEF--CPHS-FCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp EECSS--SSCE-ECTTTCTTSCEECTTTTCEE
T ss_pred cCcCC--CCcc-hhhhccCCcceecCCCCcee
Confidence 78994 9866 99999987655677888998
No 64
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=84.14 E-value=0.24 Score=44.74 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=34.3
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCC------CCCCceecccCcchh
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN------PPKGKWYCPLCLEKM 405 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~------~p~~~W~Cp~C~~~~ 405 (422)
||-+|+ ++|.+|.||+..|++. |=..||..-... ...++|.|-.|.+..
T Consensus 81 yC~wC~--~Gg~l~~Cdn~~C~r~-FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 81 YCTICC--GGREVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SCTTTS--CCSEEEECSSTTTCCE-EEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred eeeEec--CCCeEEeeCCCCCCCc-hhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 344443 5789999998779855 888996533111 346889999998754
No 65
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=82.20 E-value=0.35 Score=49.29 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=33.9
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCC------CCCCceecccCcchh
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN------PPKGKWYCPLCLEKM 405 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~------~p~~~W~Cp~C~~~~ 405 (422)
||-+|+ .+|.+|+||++.|++. |=..|+...... ...++|.|-.|....
T Consensus 95 yCr~C~--~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 95 YCSICC--SGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SCTTTC--CCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cceEcC--CCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 344443 5679999998889855 888997643111 125789999998754
No 66
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=78.35 E-value=1 Score=36.49 Aligned_cols=28 Identities=29% Similarity=0.771 Sum_probs=21.2
Q ss_pred hhcccccCCCceeeecCCCCCCcceeccc
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHCEC 383 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~~C 383 (422)
|.+|.+...|--|+|....|. .+||..|
T Consensus 20 C~iC~~~~~GAciqC~~~~C~-~~fHv~C 47 (87)
T 2lq6_A 20 CYLCKQKGVGASIQCHKANCY-TAFHVTC 47 (87)
T ss_dssp BTTTTBCCSSCEEECSCTTTC-CEEEHHH
T ss_pred CcCCCCCCCcEeEecCCCCCC-CcCcHHH
Confidence 334434446889999988895 7899999
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.50 E-value=32 Score=35.01 Aligned_cols=93 Identities=10% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAAS--MTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKY 93 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s--~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrh 93 (422)
.+|..++..|++.=..++....++...+.......+. ......+..|.+..+++++=+.+-++||.---+-..+|..-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444444444444433333221111 11223333445555555555555555554333333444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy8390 94 TRKLEQDIQKFKLEL 108 (422)
Q Consensus 94 iRrLD~dL~kf~~EL 108 (422)
|+.+=.+|++|+..+
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444454444444
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=74.79 E-value=43 Score=30.86 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8390 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA 50 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~ 50 (422)
+++|.+.++.|-.||.....-=|+|......-+.+++++...+....
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~ 65 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888887777777777665533
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=74.12 E-value=0.87 Score=46.16 Aligned_cols=40 Identities=25% Similarity=0.610 Sum_probs=24.8
Q ss_pred ceeeecCCCCCCcceecccCCc-----CCCCC--CCCceecccCcchh
Q psy8390 365 VMVACDSKNCPYEWYHCECVGI-----APDNP--PKGKWYCPLCLEKM 405 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~~CVgi-----~~~~~--p~~~W~Cp~C~~~~ 405 (422)
.-..|++..|.+. ||..|+.- ..... ..-.--||.|+...
T Consensus 325 Pdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 325 PLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 4467998789766 99999842 10000 11124599998754
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.04 E-value=14 Score=29.26 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=39.1
Q ss_pred HHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q psy8390 68 EYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGIT 116 (422)
Q Consensus 68 ~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIt 116 (422)
++..+++..+|.+..=....+.+++-|...|.++..|+.+|+.-.+.++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 5566667777778888888888899999999999999999987666543
No 71
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=70.84 E-value=13 Score=32.26 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||.-.+-.++..|-|+||.++|.-++.=+.||
T Consensus 88 EDe~k~~e~eIQKLTDkyIkkID~ll~~KEKEI 120 (123)
T 3lhp_S 88 WFDISQSLWDVQKLTDAAIKKIEAALADMEAWL 120 (123)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999998766665
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.47 E-value=10 Score=39.99 Aligned_cols=14 Identities=7% Similarity=0.373 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy8390 95 RKLEQDIQKFKLEL 108 (422)
Q Consensus 95 RrLD~dL~kf~~EL 108 (422)
+-|..-|+++..+|
T Consensus 134 rvLQsnLedq~~kI 147 (562)
T 3ghg_A 134 QLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 73
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=69.83 E-value=42 Score=27.53 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHH----HHHHHHHHHHHHHHHHHHHH
Q psy8390 23 TEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEE----KINLATQIQEFFNKYTRKLE 98 (422)
Q Consensus 23 tlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDE----KV~LA~q~ydLVDrhiRrLD 98 (422)
++....+..+..+..+|..++...-. ....+++...+.+|...+.++.++-+. .-.|-...---+...+|.--
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~---~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk 91 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLG---TAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYR 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45667778888888888887776421 224578888888888888877776643 22222233344555666666
Q ss_pred HHHHHHHHHH
Q psy8390 99 QDIQKFKLEL 108 (422)
Q Consensus 99 ~dL~kf~~EL 108 (422)
.+|.+|+.|+
T Consensus 92 ~dL~~lk~el 101 (102)
T 2qyw_A 92 KDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 7777776665
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.60 E-value=34 Score=34.97 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHhhc-ChHHHHHHHHHHHHHHHHHH
Q psy8390 4 LEDYIELVEI-LPQELRDRFTEMRLLDLQSQ 33 (422)
Q Consensus 4 LEDyLE~IE~-LP~ELqR~ltlIRELD~~~q 33 (422)
|.|||...+. ||.+|+..-..+++++....
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts 55 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTG 55 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 6778877776 88888777666666555444
No 75
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.78 E-value=65 Score=32.75 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=18.1
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 69 ~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
|.++.+..+.++.....-.+-.-.+||.|...|+++..++..
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333333455555555554444433
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=60.42 E-value=0.65 Score=34.85 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.2
Q ss_pred cceecccCCcCCCCCCCCceecccCcchh
Q psy8390 377 EWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 377 ~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
.|||..|+.-= -...+.+.||.|....
T Consensus 31 ~~~H~~Cl~~W--~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 31 ENVHRSCLSTW--LTISRNTACQICGVVY 57 (60)
T ss_dssp GSCCHHHHHHH--HHHHTCSBCTTTCCBC
T ss_pred hhhHHHHHHHH--HHhCCCCccCCCCCee
Confidence 49999998622 1112468999997654
No 77
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.34 E-value=1.2 Score=36.35 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=21.2
Q ss_pred CCCcceecccCCcCCC-CCCCCceecccCcchhccc
Q psy8390 374 CPYEWYHCECVGIAPD-NPPKGKWYCPLCLEKMAAS 408 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~-~~p~~~W~Cp~C~~~~k~r 408 (422)
|. .+||..|+..-.. ........||.|+.....+
T Consensus 61 C~-H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 61 CS-HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SC-CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CC-CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 54 4699999863210 1123467899999766543
No 78
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=58.75 E-value=1.1e+02 Score=27.79 Aligned_cols=121 Identities=14% Similarity=0.252 Sum_probs=62.6
Q ss_pred cHHHHHHHhhcChHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-hHHHHHHHHHHHH----H
Q psy8390 3 YLEDYIELVEILPQELRDRF--TEM-RLLDLQSQNSLDQLQNKVNQFYQMAASM------T-PEQRQREYENLLQ----E 68 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~l--tlI-RELD~~~q~~~~~ld~~~~kfl~~~~s~------~-~ee~~~~~~~I~~----~ 68 (422)
.+-+|++.+.+.=.+++..| +.| ++++....+.++.+...+..+.....-. . ...-.....+|.. .
T Consensus 32 ~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlEel 111 (191)
T 1nfn_A 32 RFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDV 111 (191)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888999888 777 9999999998888887666654322110 0 1111111112222 2
Q ss_pred HhhhhhchHHH---H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchhhhhhh
Q psy8390 69 YNKPMIDSEEK---I-----NLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123 (422)
Q Consensus 69 ~~ka~elaDEK---V-----~LA~q~ydLVDrhiRrLD~dL~kf~~ELEadn~GIte~lEkrs 123 (422)
-.++..+.+|= + .+=.++-=.++....+|+.++..|+.-|..---++-..|+...
T Consensus 112 r~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~v 174 (191)
T 1nfn_A 112 CGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGL 174 (191)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22223333221 1 1224444555666666677777776666654444444444433
No 79
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=58.42 E-value=81 Score=32.86 Aligned_cols=54 Identities=6% Similarity=0.264 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 57 QRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 57 e~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
..+..+.+..+++++=+.+-++||.---+-..+|..-|+.+=.+|.+|+..+.+
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666544455666666666666777666665544
No 80
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.11 E-value=9 Score=28.91 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=28.8
Q ss_pred hhcccccCCCceeeecCCCCCCcceecccCC-----cCCC--C---CCCCceecccCcchhccc
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHCECVG-----IAPD--N---PPKGKWYCPLCLEKMAAS 408 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVg-----i~~~--~---~p~~~W~Cp~C~~~~k~r 408 (422)
|..|+++..+..|.-.+ .. ||..|.. .+.. . ...++.||..|.......
T Consensus 8 C~~C~~~I~~~~v~a~~----~~-wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 8 CDSCEKYITGRVLEAGE----KH-YHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSSSCCCCSSCCBCCSS----CC-BCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cccCCCEecCeeEEeCC----CC-CCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 66666766666665553 24 5887744 1111 1 125679999998765443
No 81
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=57.44 E-value=2 Score=37.53 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=26.0
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
.|++|...-. +.+.+-. |. .+||..|+.-- ...+...||.|+...
T Consensus 56 ~C~IC~~~~~-~p~~~~~--Cg-H~fC~~Ci~~~---~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLK-NTMTTKE--CL-HRFCADCIITA---LRSGNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCS-SEEEETT--TC-CEEEHHHHHHH---HHTTCCBCTTTCCBC
T ss_pred CCcccChHhh-CcCEeCC--CC-ChhHHHHHHHH---HHhCcCCCCCCCCcC
Confidence 3556634333 3344432 64 56999998632 112357899998765
No 82
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.02 E-value=52 Score=27.09 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
.+..+...|.+-=.++|.+-. ..++.+ +.++|.+|..++.+|+.-|..
T Consensus 40 gl~Km~~vY~~nP~~GD~~s~-~~~L~e-~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 40 ALKKMKDVYEKTPQMGDPASL-EPQIAE-TLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHCGGGCCGGGS-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 455677788887888777665 334433 478888888888888876644
No 83
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=54.95 E-value=4.8 Score=39.67 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=10.0
Q ss_pred ceeeecCCCCCCccee
Q psy8390 365 VMVACDSKNCPYEWYH 380 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH 380 (422)
.++.|.. |..+|.+
T Consensus 207 R~l~Cs~--C~t~W~~ 220 (309)
T 2fiy_A 207 RYLSCSL--CACEWHY 220 (309)
T ss_dssp EEEEETT--TCCEEEC
T ss_pred EEEEeCC--CCCEEee
Confidence 5788985 6678844
No 84
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=54.63 E-value=79 Score=26.05 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q psy8390 15 PQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYT 94 (422)
Q Consensus 15 P~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhi 94 (422)
|.||++-..+|+.-=..+++.+..|..... .++ .+.+....+..+.|++.+..-..=+..|++-...+...|
T Consensus 8 peElr~Fa~~L~~F~d~Lq~~~~~L~~~f~-------~L~-sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i 79 (94)
T 3fx7_A 8 TEEVREFVGHLERFKELLREEVNSLSNHFH-------NLE-SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCC-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccc-hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHH
Confidence 677777766665544444444433333332 222 355555555555555554444444445555555566666
Q ss_pred HHHHHHH
Q psy8390 95 RKLEQDI 101 (422)
Q Consensus 95 RrLD~dL 101 (422)
|-|+.|.
T Consensus 80 ~vle~~~ 86 (94)
T 3fx7_A 80 RVLEEDY 86 (94)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 6666553
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.32 E-value=51 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8390 17 ELRDRFTEMRLLDLQS 32 (422)
Q Consensus 17 ELqR~ltlIRELD~~~ 32 (422)
|+...-.+|+.|..+.
T Consensus 457 e~~~~~~~i~~l~~~~ 472 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQ 472 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 86
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=53.87 E-value=65 Score=30.05 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 77 EEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 77 DEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
||--..-.++..|.|+|+.++|.-++.-+.||
T Consensus 175 De~k~~e~eiQklTd~~i~~iD~~l~~KEkEi 206 (209)
T 4gfq_A 175 DDLRGYTEDIQKETDKYIAKVDEIAKNKEKEI 206 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556667899999999999999998877665
No 87
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=3.3 Score=32.63 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=19.2
Q ss_pred cceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 377 EWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 377 ~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
.|||..|+.-= ....+...||.|+.....
T Consensus 42 h~fH~~Cl~~W--l~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 42 HFVHQACLQQW--IKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCEETTHHHHH--HHHHCCSBCSSSCCBCCC
T ss_pred CeeCHHHHHHH--HhhCCCCCCCCCCCeeec
Confidence 68999998621 111234689999876643
No 88
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=51.44 E-value=79 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-|+--..-.++..|.|+|+.++|.-++.-+.||
T Consensus 150 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1wqg_A 150 EDEVGRAEKDLDKTTHQYVTQIDELVKHKEGEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778999999999999999988876665
No 89
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=51.18 E-value=80 Score=28.82 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||--..-.++..|-|+|+.++|.-++.-+.||
T Consensus 150 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1dd5_A 150 EDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEI 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778899999999999999998876665
No 90
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=50.80 E-value=82 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||--..-.++..|.|+|+.++|.-++.-+.||
T Consensus 150 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1is1_A 150 EDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778899999999999999998876665
No 91
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.80 E-value=5.5 Score=30.80 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=34.5
Q ss_pred CCCCCCCCceeEeccccccccchhcccccC--CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 333 TGYGPDEPRYCRCNEQAHYNFYTIFCSQVA--FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 333 ~~~d~~e~~yCiC~~~~~~~~y~~~C~~~~--~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|..|.++..+-||.++.. -.|++|.... +...+.--. |.+ -||..|+..=... .-.||.|+....
T Consensus 9 w~~~~~~~~C~IC~~~~~--~~C~iC~~~~~~~~~~~~~~~--C~H-~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 9 WSWDVECDTCAICRVQVM--DACLRCQAENKQEDCVVVWGE--CNH-SFHNCCMSLWVKQ----NNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCCCSCBTTTTBCTT--SCCTTHHHHTCTTTCCEEEET--TSC-EEEHHHHHHHTTT----CCBCTTTCCBCC
T ss_pred eeecCCCCCCcccChhhh--ccCcccccccCCCceEEEeCC--CCC-ccChHHHHHHHHh----CCCCCCcCCCcc
Confidence 344444555667886422 2377774421 121222222 544 4999998632111 138999987654
No 92
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=50.09 E-value=83 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||--..-.++..|.|+|+.++|.-++.-+.||
T Consensus 150 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 182 (185)
T 1ise_A 150 EDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778899999999999999988876665
No 93
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.42 E-value=3.8 Score=33.95 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCceeEeccccccccchhcccc-----cCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 338 DEPRYCRCNEQAHYNFYTIFCSQ-----VAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 338 ~e~~yCiC~~~~~~~~y~~~C~~-----~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
++..+.||.+. ..-.|++|.. +..+..+.-- .|.+ -||..|+..=.. ....||.|+...
T Consensus 36 ~~d~CaIC~~~--~~~~c~~C~~~~~~~~~~~~~~~~~--~C~H-~FH~~Ci~~Wl~----~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNH--IMDLCIECQANQASATSEECTVAWG--VCNH-AFHFHCISRWLK----TRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSC--TTSCCTTHHHHTTCC---CCCEEEE--TTSC-EEEHHHHHHHHT----TCSBCSSSCSBC
T ss_pred CCCCCccCChh--HhCcCchhhccccccCCccceEeec--ccCc-EECHHHHHHHHH----cCCcCcCCCCcc
Confidence 34456679854 2234777732 1112122222 2654 499999863211 145799998764
No 94
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.29 E-value=2.1e+02 Score=28.42 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8390 93 YTRKLEQDIQKFKLELE 109 (422)
Q Consensus 93 hiRrLD~dL~kf~~ELE 109 (422)
.|..|+.++.++..+|+
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 95
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.69 E-value=2.1e+02 Score=29.64 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy8390 95 RKLEQDIQKFKLEL 108 (422)
Q Consensus 95 RrLD~dL~kf~~EL 108 (422)
..|...|.+|+..+
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 96
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.35 E-value=16 Score=29.70 Aligned_cols=35 Identities=26% Similarity=0.629 Sum_probs=27.2
Q ss_pred ceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 365 VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 365 ~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
.||.|..| -..=-|..|..+. .....|.|..|...
T Consensus 45 ~L~lC~~C--gs~gtH~~Cs~l~---~~~~~weC~~C~~v 79 (85)
T 1weq_A 45 RLILCATC--GSHGTHRDCSSLR---PNSKKWECNECLPA 79 (85)
T ss_dssp BCEECSSS--CCCEECSGGGTCC---TTCSCCCCTTTSCC
T ss_pred EEEeCccc--CCchhHHHHhCCc---CCCCCEECCcCccc
Confidence 89999975 3334899999875 45578999999853
No 97
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=48.05 E-value=8.6 Score=31.26 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=19.4
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|.+ -|+..|+.-- ...+...||.|+....
T Consensus 33 CgH-~fC~~Ci~~~---~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 33 CNH-TLCKPCFQST---VEKASLCCPFCRRRVS 61 (115)
T ss_dssp TSC-EECHHHHCCC---CCTTTSBCTTTCCBCH
T ss_pred CCC-HHhHHHHHHH---HhHCcCCCCCCCcccC
Confidence 644 4889998643 2234689999987643
No 98
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.48 E-value=16 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=20.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--. ........||.|+....
T Consensus 38 Cg-H~fC~~Ci~~~~-~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 38 CG-HNFCLKCITQIG-ETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp TC-CEEEHHHHHHHC-SSSCSCCCCSSSCCCCC
T ss_pred CC-ChhhHHHHHHHH-HcCCCCCCCCCCCCcCC
Confidence 64 459999986431 12235678999987654
No 99
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.21 E-value=2.5e+02 Score=29.15 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8390 85 QIQEFFNKYTRKLEQDIQK 103 (422)
Q Consensus 85 q~ydLVDrhiRrLD~dL~k 103 (422)
.+++-+...|.+|+..+..
T Consensus 175 ~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543
No 100
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=46.19 E-value=85 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||--..-.++..|.|+|+.++|.-++.-+.||
T Consensus 151 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 183 (185)
T 1eh1_A 151 EDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778899999999999999998876665
No 101
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.77 E-value=91 Score=32.40 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 73 MIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 73 ~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
......-|++-+.+++.+...|.+|+..+..++...
T Consensus 158 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334566788888888888888888888887765543
No 102
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=45.39 E-value=1.6e+02 Score=26.07 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 62 YENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 62 ~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
+.+-...|..-+....+|+.-|..-++..+|-+.+|+.++..++.+|..
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777778888899999999999999999999999888876
No 103
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=45.08 E-value=4.5 Score=34.35 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=1.6
Q ss_pred CCCCCceeEeccccccccchhccccc-----CCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 336 GPDEPRYCRCNEQAHYNFYTIFCSQV-----AFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 336 d~~e~~yCiC~~~~~~~~y~~~C~~~-----~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|.+...+.||.+. ...-|++|... .+...|.-- .|.+ .||..|+..=.. ..-.||.|+...
T Consensus 45 d~~~d~CaICl~~--~~~~c~~C~~~~~~~~~~~~~v~~~--~C~H-~FH~~CI~~Wl~----~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 45 DIVVDNCAICRNH--IMDLCIECQANQASATSEECTVAWG--VCNH-AFHFHCISRWLK----TRQVCPLDNREW 110 (117)
T ss_dssp CCCC-----------------------------------------------------------------------
T ss_pred cCCCCcCeECChh--hcCcChhhhcccccccccccccccC--CcCc-eEcHHHHHHHHH----cCCcCCCCCCee
Confidence 3344567789854 22246666321 111122111 2543 499999864211 135799998764
No 104
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.31 E-value=2.1e+02 Score=29.89 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q psy8390 92 KYTRKLEQDIQ 102 (422)
Q Consensus 92 rhiRrLD~dL~ 102 (422)
..|+|||.++.
T Consensus 146 skIQRLE~dI~ 156 (491)
T 1m1j_A 146 VEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 105
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.70 E-value=2e+02 Score=26.70 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=18.4
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 9 ELVEILPQELRDRFTEMRLLDLQSQNSLDQL 39 (422)
Q Consensus 9 E~IE~LP~ELqR~ltlIRELD~~~q~~~~~l 39 (422)
..+..||.+|...-.++..+..++..+...+
T Consensus 25 ~~~~~lp~el~~le~~~~~l~~~~~~~~~~l 55 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKEAKNKAILNLEEEK 55 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777776666666666555444443
No 106
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.58 E-value=1.9e+02 Score=30.11 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 89 FFNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 89 LVDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
.|...|..|+.++..++.++...--.||.++
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3556677788888887777776444444443
No 107
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.14 E-value=46 Score=29.46 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=21.3
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 65 LLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKL 106 (422)
Q Consensus 65 I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ 106 (422)
+.+.+..+.....+-+.-+.+.++-..+...|+-+.-.+++.
T Consensus 101 L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 101 LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555444444433
No 108
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=41.74 E-value=1.4e+02 Score=25.73 Aligned_cols=18 Identities=0% Similarity=0.005 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8390 85 QIQEFFNKYTRKLEQDIQ 102 (422)
Q Consensus 85 q~ydLVDrhiRrLD~dL~ 102 (422)
..+.-|+....++...|.
T Consensus 114 ~~l~~l~~e~~~v~~~L~ 131 (153)
T 3us6_A 114 RCLQQVKQEYLLVKNKLE 131 (153)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 109
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=41.13 E-value=1e+02 Score=28.89 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=57.8
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH-------HHHHHHHHHHhhhhhc
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQ-------REYENLLQEYNKPMID 75 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~-------~~~~~I~~~~~ka~el 75 (422)
-|+.|+..+..=|....+.|.-++.+=...+. | -.-.++.| +.....++++.. ..+..|.+.+...+.+
T Consensus 104 Ale~y~~ALq~~pp~~~~il~aLk~yirae~K--D-R~Hti~hy-~Hv~~~dpe~A~~~k~~v~~hL~~id~r~NqsL~l 179 (211)
T 3umh_A 104 ALENYITALQAVPPRPRHVFNMLKKYVRAEQK--D-RQHTLKHF-EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSL 179 (211)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH--H-HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--H-HHhHHHHH-HHHHcCCHHHHHhcchHHHHHHHHHHHHHhHhHHH
Confidence 37899999999999888888877763222111 1 11122222 222233333322 2345688888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFK 105 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~ 105 (422)
.+-==.|+..+.+.|+-.+.+.+.+...|+
T Consensus 180 L~~~P~l~~~i~~~~~e~l~~~~~~~~~~~ 209 (211)
T 3umh_A 180 LYNVPAVAEEIQDEVDELLQKEQNYSDDIE 209 (211)
T ss_dssp GGGSHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHHHHHHHHHHHHHHhccchhhc
Confidence 888888999999999999888888776553
No 110
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=41.09 E-value=1.5e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||.-.+-.++..|-|+||.++|.-++.=+.||
T Consensus 78 EDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI 110 (121)
T 3lf9_A 78 WFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888999999999999999988766554
No 111
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=41.07 E-value=56 Score=28.19 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=25.9
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQNSLDQLQNK 42 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~ 42 (422)
+.+||.+|+.....++.++...+.+..++...
T Consensus 4 m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 4 MAQNNKELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888888888777776665
No 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.93 E-value=7.5 Score=29.21 Aligned_cols=33 Identities=21% Similarity=0.554 Sum_probs=20.3
Q ss_pred CCCcceecccCCcCCC--CCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPD--NPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~--~~p~~~W~Cp~C~~~~k~ 407 (422)
|. ..||..|+.--.. ....+...||.|+.....
T Consensus 37 Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 37 CN-HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 54 3489999763100 112357899999876543
No 113
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=38.69 E-value=1.2e+02 Score=29.15 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=41.8
Q ss_pred HhhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q psy8390 10 LVEILPQELRDRFTE-MRLLDLQSQNSLDQLQNKVNQFYQMAAS----MTPEQRQREYENLLQEYNKPMIDSEEKINLAT 84 (422)
Q Consensus 10 ~IE~LP~ELqR~ltl-IRELD~~~q~~~~~ld~~~~kfl~~~~s----~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~ 84 (422)
..+.||.|+|..|.+ .++.-....+...+.++..-+.++..+- .++++++...+..+..+.+.. ++-....
T Consensus 253 ~~~~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~ 328 (365)
T 2hzl_A 253 AYEGLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGTQLRPFSPEILQACFEAANEVYAEME----ASNPAFK 328 (365)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHH----HHCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHH----ccCHHHH
Confidence 356899999999988 4666554444444444433333333221 223334433333333333221 1222455
Q ss_pred HHHHHHHHHHHHH
Q psy8390 85 QIQEFFNKYTRKL 97 (422)
Q Consensus 85 q~ydLVDrhiRrL 97 (422)
.+++.|..+++.+
T Consensus 329 ~~~~~~~~~~~~~ 341 (365)
T 2hzl_A 329 KIWDSIKAFRSEH 341 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666665544
No 114
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.55 E-value=30 Score=25.79 Aligned_cols=29 Identities=21% Similarity=0.579 Sum_probs=18.8
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|. ..||..|+.--. .....||.|+.....
T Consensus 36 C~-H~fc~~Ci~~~~----~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 36 CN-HLFHDSCIVPWL----EQHDSCPVCRKSLTG 64 (78)
T ss_dssp TS-CEEETTTTHHHH----TTTCSCTTTCCCCCC
T ss_pred CC-CeecHHHHHHHH----HcCCcCcCcCCccCC
Confidence 54 359999986321 122589999877653
No 115
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=37.42 E-value=8.6 Score=28.88 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=27.5
Q ss_pred cchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 353 FYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 353 ~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
+.|++|...-...++ .. |. ..|+..|+.-- ...+...||.|+....
T Consensus 9 ~~C~IC~~~~~~Pv~-~~---Cg-H~fc~~Ci~~~---~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCPISLELMKDPVI-VS---TG-QTYERSSIQKW---LDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCTTTSCCCSSEEE-ET---TT-EEEEHHHHHHH---HTTTCCBCTTTCCBCS
T ss_pred CCCCCccccccCCEE-cC---CC-CeecHHHHHHH---HHHCcCCCCCCcCCCC
Confidence 456666554334433 22 64 45899998632 1124678999987654
No 116
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.28 E-value=1.8e+02 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
|...|..|+.++..++.++..---.||.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 456677788888887777776444444433
No 117
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=35.14 E-value=91 Score=23.42 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=33.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 13 ILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQM 49 (422)
Q Consensus 13 ~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~ 49 (422)
+||.+=.|.|-+||.|=+..|.+..++....+.|+..
T Consensus 24 ~~P~~~~rTLLEi~KL~LEIQKL~~EL~glskefleh 60 (65)
T 2yf2_A 24 HVPTEDVKTLLEIRKLFLEIQKLKVELQGLSKEFLEH 60 (65)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 7999999999999999999999999999999988863
No 118
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=35.02 E-value=12 Score=31.69 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=17.8
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|.+ .||..|+.--. .....||.|+....
T Consensus 71 CgH-~fc~~Ci~~~~----~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 71 CAH-SFCSYCINEWM----KRKIECPICRKDIK 98 (138)
T ss_dssp TSC-EEEHHHHHHHT----TTCSBCTTTCCBCC
T ss_pred CCC-CccHHHHHHHH----HcCCcCCCCCCcCC
Confidence 543 69999975321 12356999987553
No 119
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=34.87 E-value=13 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.5
Q ss_pred CCceecccCcchh
Q psy8390 393 KGKWYCPLCLEKM 405 (422)
Q Consensus 393 ~~~W~Cp~C~~~~ 405 (422)
.|+|+|+.|....
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 4899999997653
No 120
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=34.04 E-value=6 Score=29.82 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=18.0
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|. ..||..|+.--. ...+...||.|+...
T Consensus 34 Cg-H~fC~~Ci~~~~--~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 34 CG-NSYCDECIRTAL--LESDEHTCPTCHQND 62 (74)
T ss_dssp SC-CEECTTHHHHHH--HHSSSSCCSSSCCSS
T ss_pred CC-CHHHHHHHHHHH--HhcCCCcCCCCCCcC
Confidence 53 459999985321 112346899998753
No 121
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=33.91 E-value=7 Score=31.31 Aligned_cols=46 Identities=15% Similarity=0.408 Sum_probs=26.6
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
.|++|... ....+.|-. |. ..||..|+..-. ......||.|+....
T Consensus 24 ~C~IC~~~-~~~p~~~~~--Cg-H~FC~~Ci~~~~---~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCFICMEK-LRDARLCPH--CS-KLCCFSCIRRWL---TEQRAQCPHCRAPLQ 69 (100)
T ss_dssp BCTTTCSB-CSSEEECTT--TC-CEEEHHHHHHHH---HHTCSBCTTTCCBCC
T ss_pred CCccCCcc-ccCccccCC--CC-ChhhHHHHHHHH---HHCcCCCCCCCCcCC
Confidence 46666443 334556553 64 349999986320 111278999987653
No 122
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=33.81 E-value=6.9 Score=32.34 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=19.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|.+ -||..|+..- .......||.|+.....
T Consensus 70 CgH-~fC~~Ci~~~---~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 70 CQH-NVCKDCLDRS---FRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TSC-EEEHHHHHHH---HHTTCCBCTTTCCBCCT
T ss_pred CCC-cccHHHHHHH---HhHCcCCCCCCCccCCC
Confidence 644 4899998532 11245689999876643
No 123
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=33.76 E-value=2e+02 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.354 Sum_probs=32.6
Q ss_pred HHHHHHHhhcChHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 4 LEDYIELVEILPQELRDRF--TEM-RLLDLQSQNSLDQLQNKVNQFYQM 49 (422)
Q Consensus 4 LEDyLE~IE~LP~ELqR~l--tlI-RELD~~~q~~~~~ld~~~~kfl~~ 49 (422)
+-+|+.-+...=.+....| +++ ++|+.++.+.++.+...+..+...
T Consensus 33 ~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~ 81 (165)
T 1gs9_A 33 FWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQ 81 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666665555555443 366 899999999999998888877653
No 124
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=33.06 E-value=1.6e+02 Score=26.85 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLEL 108 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~EL 108 (422)
-||--..-.++..|-|+|+.++|.-++.-+.||
T Consensus 149 eD~~k~~e~~iQkltd~~i~~id~~~~~KEkEi 181 (184)
T 1ge9_A 149 EDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888999999999999999998876665
No 125
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=32.95 E-value=17 Score=25.22 Aligned_cols=26 Identities=35% Similarity=0.737 Sum_probs=17.1
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
|. ..||..|+..-. .....||.|+..
T Consensus 27 C~-H~f~~~Ci~~w~----~~~~~CP~Cr~~ 52 (55)
T 1iym_A 27 CG-HGFHAECVDMWL----GSHSTCPLCRLT 52 (55)
T ss_dssp SC-CEECTTHHHHTT----TTCCSCSSSCCC
T ss_pred CC-CcccHHHHHHHH----HcCCcCcCCCCE
Confidence 53 459999986431 124579999754
No 126
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.82 E-value=3.3e+02 Score=27.39 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCchhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEADNSGITEIL 119 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEadn~GIte~l 119 (422)
|...|..|+.++..++.++...--.||.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 76 LGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455677777777777777776444444444
No 127
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=32.57 E-value=19 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCcceecccCCcCCCCC---CCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNP---PKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~---p~~~W~Cp~C~~~~k~ 407 (422)
|.+ .||..|+.--.... ..+...||.|+.....
T Consensus 30 CgH-~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 30 CGH-SLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSC-CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCC-HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 543 48999986331111 1346899999877643
No 128
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.41 E-value=7.5 Score=29.12 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=17.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+..-. .....||.|+....
T Consensus 44 C~-H~fh~~Ci~~w~----~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 44 CN-HEFHAKCVDKWL----KANRTCPICRADSG 71 (75)
T ss_dssp TT-EEEETTHHHHHH----HHCSSCTTTCCCCC
T ss_pred CC-CHhHHHHHHHHH----HcCCcCcCcCCcCC
Confidence 54 359999986321 01247999986543
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.33 E-value=79 Score=32.38 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=22.5
Q ss_pred HhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKL 106 (422)
Q Consensus 69 ~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ 106 (422)
|+..+.-.+.-|..-+.+++..+..|.+|...+..|+.
T Consensus 96 ~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 96 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666666666666666655444
No 130
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=31.86 E-value=19 Score=34.55 Aligned_cols=17 Identities=35% Similarity=0.896 Sum_probs=11.9
Q ss_pred CCCCCceecccCcchhc
Q psy8390 390 NPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 390 ~~p~~~W~Cp~C~~~~k 406 (422)
..|-.+||||.|...-.
T Consensus 51 N~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 51 NRPVADFYCNHCSEEFE 67 (257)
T ss_dssp --CCCEEECTTTCCEEE
T ss_pred CCcccccccCCcchhhe
Confidence 35667899999987543
No 131
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.72 E-value=22 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=14.4
Q ss_pred eecccCCcCCCCCCCCceecccCcchh
Q psy8390 379 YHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 379 fH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|+..|+.--.. ..||.|+...
T Consensus 45 fC~~Ci~~~~~------~~CP~Cr~~~ 65 (117)
T 1jm7_B 45 FCSNCVSDCIG------TGCPVCYTPA 65 (117)
T ss_dssp BCTTTGGGGTT------TBCSSSCCBC
T ss_pred HHHHHHHHHhc------CCCcCCCCcC
Confidence 88888754311 5799998754
No 132
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.37 E-value=13 Score=29.01 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=20.9
Q ss_pred eeecCCCCCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 367 VACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 367 I~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
+.|. .|... ||..|+.--. .....=.||.|+..-
T Consensus 29 ~~C~--~C~h~-fH~~Ci~kWl--~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 29 QSCE--TCGIR-MHLPCVAKYF--QSNAEPRCPHCNDYW 62 (74)
T ss_dssp EECS--SSCCE-ECHHHHHHHS--TTCSSCCCTTTCSCC
T ss_pred CccC--CCCch-hhHHHHHHHH--HhcCCCCCCCCcCcC
Confidence 4566 47655 9999987221 111225699998653
No 133
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.29 E-value=1.4e+02 Score=31.09 Aligned_cols=29 Identities=3% Similarity=0.063 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCch
Q psy8390 89 FFNKYTRKLEQDIQKFKLELEADNSGITE 117 (422)
Q Consensus 89 LVDrhiRrLD~dL~kf~~ELEadn~GIte 117 (422)
.|...|..|+.++..++.++..---.||.
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566777777777777777663333333
No 134
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.26 E-value=17 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|. ..||..|+.--. .....||.|+.....
T Consensus 33 Cg-H~fC~~Ci~~~~----~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 33 CK-HVFCYLCVKGAS----WLGKRCALCRQEIPE 61 (71)
T ss_dssp TT-EEEEHHHHHHCT----TCSSBCSSSCCBCCH
T ss_pred CC-CHHHHHHHHHHH----HCCCcCcCcCchhCH
Confidence 64 459999986321 123689999887653
No 135
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.08 E-value=9.9 Score=28.93 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=19.7
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--. ........||.|+....
T Consensus 37 Cg-H~fC~~Ci~~~~-~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 37 CG-HTICRQCLEKLL-ASSINGVRCPFCSKITR 67 (88)
T ss_dssp SS-CEEEHHHHHHHH-HHCSSCBCCTTTCCCBC
T ss_pred CC-ChhhHHHHHHHH-HcCCCCcCCCCCCCccc
Confidence 64 469999986321 11124589999987654
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.67 E-value=2.1e+02 Score=22.93 Aligned_cols=96 Identities=14% Similarity=0.228 Sum_probs=52.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCChHHHHHHHHH-----HHHHHhhhhhchHHHHH
Q psy8390 13 ILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQ------MAASMTPEQRQREYEN-----LLQEYNKPMIDSEEKIN 81 (422)
Q Consensus 13 ~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~------~~~s~~~ee~~~~~~~-----I~~~~~ka~elaDEKV~ 81 (422)
+||.+++..+..+..+-.+++.+..++...-...-. .....+++.+ .|.- |......++..-++++.
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~--vy~~iG~vfv~~~~~ea~~~L~~~~e 80 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAV--VYKTVGTLIVKTTKDKAVAELKEKIE 80 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCC--EEEEETTEEEEECHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--hHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 688899888888888888888777666654332211 1111111100 0000 11122334444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 82 LATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 82 LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
-.....+-+++.+..|...+..++..|.+
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677777777777777766654
No 137
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.92 E-value=1.2e+02 Score=24.66 Aligned_cols=75 Identities=12% Similarity=0.288 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q psy8390 30 LQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLAT-----QIQEFFNKYTRKLEQDIQKF 104 (422)
Q Consensus 30 ~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~-----q~ydLVDrhiRrLD~dL~kf 104 (422)
..+..+..+|...+..+ .....+++...+..|...+.+|.++-+. |.|-. ..---+...+|.--.+|.+|
T Consensus 12 ~df~~l~~~i~~kl~~i----~~~~geerk~~i~~ie~~l~EA~ell~q-MelE~r~~p~~~R~~~~~klr~Yk~dL~~l 86 (102)
T 1vcs_A 12 QDFAVLTAEITSKIARV----PRLPPDEKKQMVANVEKQLEEARELLEQ-MDLEVREIPPQSRGMYSNRMRSYKQEMGKL 86 (102)
T ss_dssp HHHHHHHHHHHHHHHHG----GGSCTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----hccCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555544432 1223355555566666655555554432 22211 11123334445555555555
Q ss_pred HHHHh
Q psy8390 105 KLELE 109 (422)
Q Consensus 105 ~~ELE 109 (422)
+.++.
T Consensus 87 k~elk 91 (102)
T 1vcs_A 87 ETDFK 91 (102)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 55553
No 138
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=29.86 E-value=7.9 Score=26.89 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=23.5
Q ss_pred chhcccccC--CCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 354 YTIFCSQVA--FGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 354 y~~~C~~~~--~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
.|++|...- .+..+..-. |. ..||..|+.--.. ....||.|+..
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~--Cg-H~fc~~Ci~~~~~----~~~~CP~Cr~~ 52 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLP--CG-HLLHRTCYEEMLK----EGYRCPLCSGP 52 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECT--TS-CEEETTHHHHHHH----HTCCCTTSCCS
T ss_pred cCcccChhhcCCCcCeEecC--CC-CcccHHHHHHHHH----cCCcCCCCCCc
Confidence 355664432 222333332 54 4699999863200 11679999764
No 139
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=29.82 E-value=20 Score=28.75 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=21.9
Q ss_pred hhcccccCCCceeeecCCCCCCcceecccCCcC
Q psy8390 355 TIFCSQVAFGVMVACDSKNCPYEWYHCECVGIA 387 (422)
Q Consensus 355 ~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~ 387 (422)
|.+|+....+++-.|.. |... +|..|+..+
T Consensus 50 C~~C~~~~~~~~Y~C~~--C~f~-lH~~Ca~~p 79 (89)
T 1v5n_A 50 CDKCEEEGTIWSYHCDE--CDFD-LHAKCALNE 79 (89)
T ss_dssp CTTTSCCCCSCEEECTT--TCCC-CCHHHHHCS
T ss_pred eCCCCCcCCCcEEEcCC--CCCe-EcHHhcCCC
Confidence 55565656678888985 7654 999998765
No 140
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=29.64 E-value=35 Score=26.41 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=19.0
Q ss_pred CceeeecCCCCCCcceecccCCcCCCCCCCCceecc
Q psy8390 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCP 399 (422)
Q Consensus 364 g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp 399 (422)
...|+||+..| ..|=-+. .++.... -.++|||-
T Consensus 16 ~~WVQCd~p~C-~KWR~LP-~~~~~~~-lpd~W~C~ 48 (69)
T 2e61_A 16 LVWVQCSFPNC-GKWRRLC-GNIDPSV-LPDNWSCD 48 (69)
T ss_dssp CCEEECSSTTT-CCEEECC-SSCCTTT-SCTTCCGG
T ss_pred CeEEEeCcccc-CcccCCc-ccccccc-CCCcCEeC
Confidence 47899995558 4774431 1122112 23689995
No 141
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.50 E-value=11 Score=27.48 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=17.4
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--.. ....||.|+....
T Consensus 35 C~-H~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 35 CM-HLFHQVCVDQWLI----TNKKCPICRVDIE 62 (69)
T ss_dssp TS-CEEEHHHHHHHHH----HCSBCTTTCSBSC
T ss_pred CC-CHHHHHHHHHHHH----cCCCCcCcCcccc
Confidence 64 4599999863100 1235999987654
No 142
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=29.13 E-value=6.3 Score=30.62 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=17.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|.+ -|+..|+.-- -...+...||.|+...
T Consensus 32 CgH-~fC~~Ci~~~--~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 32 CGN-SYCDECIRTA--LLESDEHTCPTCHQND 60 (92)
T ss_dssp TCC-EECHHHHHHH--HHHCTTCCCTTTCCSS
T ss_pred CCC-HHHHHHHHHH--HHhcCCCcCcCCCCcC
Confidence 533 3788887522 1112347899998764
No 143
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=12 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.0
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|.+ -||..|+.--. .....||.|+.....
T Consensus 34 CgH-~fC~~Ci~~~~----~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 34 CLH-TFCKSCIVRHF----YYSNRCPKCNIVVHQ 62 (72)
T ss_dssp SCC-EECHHHHHHHH----HHCSSCTTTCCCCCS
T ss_pred CCC-HHHHHHHHHHH----HcCCcCCCcCcccCc
Confidence 533 48999985320 013579999887654
No 144
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=28.86 E-value=2.7e+02 Score=23.62 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8390 85 QIQEFFNKYTRKLEQDI 101 (422)
Q Consensus 85 q~ydLVDrhiRrLD~dL 101 (422)
.+++.|.....++-..|
T Consensus 115 ~~l~~l~~e~~~~~~~L 131 (149)
T 1yvi_A 115 MALAVVRNDFYDLRNKF 131 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 145
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.48 E-value=2.6e+02 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCchh
Q psy8390 88 EFFNKYTRKLEQDIQKFKLELEADNSGITEI 118 (422)
Q Consensus 88 dLVDrhiRrLD~dL~kf~~ELEadn~GIte~ 118 (422)
..|...|..|+.++..++.++...--.||.+
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 144 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3556677777777777777776644444433
No 146
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=28.15 E-value=27 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=13.9
Q ss_pred chhcccccCCCceeeecCCCCCCcceecccCCc
Q psy8390 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGI 386 (422)
Q Consensus 354 y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi 386 (422)
|+++|+++-... | +|..+||--.|...
T Consensus 4 yD~~C~KPC~T~----D--DCS~gw~CqaC~nf 30 (38)
T 4cpa_I 4 ADPICNKPCKTH----D--DCSGAWFCQACWNS 30 (38)
T ss_dssp SCTTTTCBCSSS----S--SSCCCSSCCEEETT
T ss_pred cccccCCCccCc----c--ccccchHHHHHHhh
Confidence 667775532210 2 35556666666544
No 147
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.99 E-value=35 Score=24.18 Aligned_cols=21 Identities=19% Similarity=0.585 Sum_probs=15.0
Q ss_pred eecccCCcCCCCCCCCceecccCcchhc
Q psy8390 379 YHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 379 fH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|+..|+.- ....||.|+....
T Consensus 28 fC~~Ci~~-------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 28 LCSGCLEA-------SGMQCPICQAPWP 48 (56)
T ss_dssp SBTTTCSS-------SSSSCSSCCSSSS
T ss_pred ccHHHHcc-------CCCCCCcCCcEee
Confidence 77888743 3568999987654
No 148
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=4.8 Score=29.24 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=17.4
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|.+ .||..|+.--.. ....||.|+....
T Consensus 40 CgH-~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 40 CGH-VFCSQCLRDSLK----NANTCPTCRKKIN 67 (69)
T ss_dssp SSC-EEEHHHHHHHHH----HCSSCTTTCCCCC
T ss_pred CCC-hhcHHHHHHHHH----cCCCCCCCCCccC
Confidence 543 599999853100 1347999987654
No 149
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.35 E-value=18 Score=34.02 Aligned_cols=33 Identities=24% Similarity=0.595 Sum_probs=22.1
Q ss_pred eeecCCCCCCcceecccCCcCCCCCCCCceecccCcch
Q psy8390 367 VACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404 (422)
Q Consensus 367 I~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~ 404 (422)
+.|.+ |... ||..|+.-- -...+.--||.|...
T Consensus 194 ~~C~~--C~~~-~H~~C~~~~--~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 194 QSCET--CGIR-MHLPCVAKY--FQSNAEPRCPHCNDY 226 (238)
T ss_dssp EECSS--SCCE-ECHHHHHHH--TTTCSSCBCTTTCCB
T ss_pred cccCc--cChH-HHHHHHHHH--HHhCCCCCCCCCCCC
Confidence 67886 7655 899998632 112245679999764
No 150
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=26.99 E-value=19 Score=28.40 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=17.9
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--.. ....||.|+....
T Consensus 41 Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 41 CS-HNYCSLCIRKFLS----YKTQCPTCCVTVT 68 (99)
T ss_dssp TC-CEEEHHHHHHHHT----TCCBCTTTCCBCC
T ss_pred CC-CHhhHHHHHHHHH----CCCCCCCCCCcCC
Confidence 54 3599999853211 2368999987554
No 151
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=7 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=20.0
Q ss_pred CCCcceecccCCcCCCC--CCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDN--PPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~--~p~~~W~Cp~C~~~~k~ 407 (422)
|. ..||..|+..-... ...+...||.|+.....
T Consensus 37 Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 37 CG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp SS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 53 45899998531001 12346889999876553
No 152
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=26.84 E-value=15 Score=29.55 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=26.4
Q ss_pred cchhcccccCCCceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 353 FYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 353 ~y~~~C~~~~~g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
+.|++|...-.. .+.... |. ..||..|+.--.. ....||.|+....
T Consensus 16 ~~C~IC~~~~~~-p~~~~~--Cg-H~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIE--CL-HSFCKTCIVRYLE----TSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSS-EEEETT--TC-CEEEHHHHHHHHT----SCSBCTTTCCBSC
T ss_pred CCCccCChHHhC-cCEeCC--CC-ChhhHHHHHHHHH----hCCcCcCCCcccc
Confidence 457777443333 344322 64 4599999853211 1268999987654
No 153
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.78 E-value=1.4e+02 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=23.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 74 IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 74 elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
...|-|+.-+..-.+-++..|..|+++|+....+++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455545555566677777777777777766654
No 154
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.75 E-value=13 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=19.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--. ....+.+.||.|+....
T Consensus 39 Cg-H~fC~~Ci~~~~-~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 39 CD-HIFCKFCMLKLL-NQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TS-CCCCSHHHHHHH-HSSSSSCCCTTTSCCCC
T ss_pred CC-CHHHHHHHHHHH-HhCCCCCCCcCCCCcCC
Confidence 64 458999976221 11234578999987654
No 155
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=26.49 E-value=22 Score=23.52 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=10.8
Q ss_pred CCCceecccCcchh
Q psy8390 392 PKGKWYCPLCLEKM 405 (422)
Q Consensus 392 p~~~W~Cp~C~~~~ 405 (422)
..++|.|+.|....
T Consensus 3 ~~gDW~C~~C~~~N 16 (33)
T 2k1p_A 3 SANDWQCKTCSNVN 16 (33)
T ss_dssp SSSSCBCSSSCCBC
T ss_pred CCCCcccCCCCCcc
Confidence 35899999997654
No 156
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=26.48 E-value=14 Score=28.95 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=17.6
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchh
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~ 405 (422)
|. ..||..|+..-. .....||.|+...
T Consensus 61 C~-H~Fh~~Ci~~wl----~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 61 CH-HYFHKPCVSIWL----QKSGTCPVCRCMF 87 (91)
T ss_dssp TT-EEEEHHHHHHHH----TTTCBCTTTCCBS
T ss_pred CC-ChHHHHHHHHHH----HcCCcCcCcCccC
Confidence 64 469999986321 1234899998654
No 157
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.40 E-value=8.3 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=18.9
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+..-.. ....||.|+....
T Consensus 32 Cg-H~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 32 CA-HSFCQKCIDKWSD----RHRNCPICRLQMT 59 (70)
T ss_dssp TT-EEECHHHHHHSSC----CCSSCHHHHHCTT
T ss_pred CC-CcccHHHHHHHHH----CcCcCCCcCCccc
Confidence 53 4499999864311 4678999987654
No 158
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=26.28 E-value=4.4e+02 Score=27.84 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy8390 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMA--ASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKY 93 (422)
Q Consensus 16 ~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~--~s~~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrh 93 (422)
.++++.+..+.++=.++..++++=.+..+.|++.- ++..++++..+-..|++.++.+.+.-=+=+.++..++++++.-
T Consensus 389 ~~m~~i~~~~~~l~~~Ll~LiDeDaeAF~~vm~AykLPK~TeEEK~~R~~aiq~Alk~Aa~VPL~ia~~~~e~l~l~~~l 468 (541)
T 1tt9_A 389 STMRRLIPPFHAASAQLTSLVDADARAFAACLGAIKLPKNTPEERDRRTCALQEGLRQAVAVPLKLAETVSQLWPALQEL 468 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556666655555555555444444444454422 2344677777778999999988877655555555555555543
No 159
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.28 E-value=3.1e+02 Score=24.00 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q psy8390 41 NKVNQFYQMAASM--TPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKL 97 (422)
Q Consensus 41 ~~~~kfl~~~~s~--~~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrL 97 (422)
+.++.++...+.. .+++..+.+.++.++...+-+-..++|.-+....+.|+.-++.+
T Consensus 71 kqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554443 35555566677777777777666777777766666666555543
No 160
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=26.14 E-value=3.8e+02 Score=24.49 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--C--------------C--hHHHHHHHHHHHHHHhhhhhchHHHHHHHH---
Q psy8390 26 RLLDLQSQNSLDQLQNKVNQFYQMAAS--M--------------T--PEQRQREYENLLQEYNKPMIDSEEKINLAT--- 84 (422)
Q Consensus 26 RELD~~~q~~~~~ld~~~~kfl~~~~s--~--------------~--~ee~~~~~~~I~~~~~ka~elaDEKV~LA~--- 84 (422)
..+|..+.+.+..+|...+..+...+. . + ...-.+.+..+.+.+..++....+=+.+|.
T Consensus 83 e~fee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s~i~e~~~g~~~~~emL~~ll~~e~~~i~~~re~i~~aee~D 162 (211)
T 2c2j_A 83 ELLQDHYEGISKFADDVAERQLSVGASSDGRAITIVAASRLPEIPGGFLDDAQVIQFFTYQYETVGQRIHQRVGDVEKVD 162 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHTCCSCCCCCSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455777777776677666655432211 0 0 012233444444444444444444444444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8390 85 -QIQEFFNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 85 -q~ydLVDrhiRrLD~dL~kf~~ELEa 110 (422)
-+.||++..++.+|..+--|+..|+.
T Consensus 163 ~~T~dLl~~il~~~EkhiW~L~a~L~~ 189 (211)
T 2c2j_A 163 PTTANLLQEVEHIIEKYQWQMRAFLQN 189 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788888888888888777766653
No 161
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=25.79 E-value=3.4e+02 Score=23.86 Aligned_cols=86 Identities=7% Similarity=0.058 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CC-h--H----HHHHHHHHHHHHHhhhhhchHHHHHHHH-
Q psy8390 26 RLLDLQSQNSLDQLQNKVNQFYQMAAS-------------MT-P--E----QRQREYENLLQEYNKPMIDSEEKINLAT- 84 (422)
Q Consensus 26 RELD~~~q~~~~~ld~~~~kfl~~~~s-------------~~-~--e----e~~~~~~~I~~~~~ka~elaDEKV~LA~- 84 (422)
..+|..+.+.+..++...+..+...+. .+ . + ...+.+..+.+.+..+...-.+=+.+|.
T Consensus 61 ~~f~~~~~ee~~haD~iaERI~~LGg~p~~~~~~~~~~s~I~~e~~~~~~~~~~e~l~~~l~~e~~v~~~~~~~i~~A~e 140 (188)
T 2clb_A 61 EIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYG 140 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHCSSCCCCCCTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhccCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777776666666555432211 11 1 1 2334555555555555555555555554
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8390 85 ---QIQEFFNKYTRKLEQDIQKFKLELEAD 111 (422)
Q Consensus 85 ---q~ydLVDrhiRrLD~dL~kf~~ELEad 111 (422)
.+.++++.+++..+.+..-|..-|+.+
T Consensus 141 ~D~~T~dlL~~~l~e~ee~~~~l~~~L~~~ 170 (188)
T 2clb_A 141 KDPRTYDLAQRILQEEIEHEAWFLELLYGR 170 (188)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 367888999999888888888877654
No 162
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.77 E-value=1.4e+02 Score=30.36 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 76 SEEKINLATQIQEFFNKYTRKLEQDIQ 102 (422)
Q Consensus 76 aDEKV~LA~q~ydLVDrhiRrLD~dL~ 102 (422)
.++.|+..+.+++-.+..|..|...+.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 163
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.42 E-value=11 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=18.8
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|. ..||..|+.--. ......||.|+....
T Consensus 33 Cg-H~fC~~Ci~~~~---~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 33 CG-HRFCESCMAALL---SSSSPKCTACQESIV 61 (66)
T ss_dssp SS-CCCCHHHHHHHH---TTSSCCCTTTCCCCC
T ss_pred CC-CHHHHHHHHHHH---HhCcCCCCCCCcCCC
Confidence 54 349999986331 134567999987654
No 164
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=25.05 E-value=2.3e+02 Score=23.85 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=39.2
Q ss_pred cHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh----hhchHH
Q psy8390 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKP----MIDSEE 78 (422)
Q Consensus 3 YLEDyLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka----~elaDE 78 (422)
+|+.|++-...+=..|...+..+.. +..-.+.+..+-.....+-+.++..--..-...-..+...+..+ .....+
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~-~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~~ 83 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEK-NPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSD 83 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5666666544433333333322211 00001233444444555544444433333333333444333222 234445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8390 79 KINLATQIQEFFNKYTRKL 97 (422)
Q Consensus 79 KV~LA~q~ydLVDrhiRrL 97 (422)
-+.+....+|.|...+..+
T Consensus 84 l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 84 LLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 165
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=25.02 E-value=2.4e+02 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8390 81 NLATQIQEFFNKYTRKLEQDI 101 (422)
Q Consensus 81 ~LA~q~ydLVDrhiRrLD~dL 101 (422)
.+++++...|++|+++|=..|
T Consensus 169 ~~~~~~~~~i~~~v~~m~~~l 189 (341)
T 3swh_A 169 VFATSFQPHIEECVRQMGDIL 189 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666654433
No 166
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=24.26 E-value=47 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.0
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 11 VEILPQELRDRFTEMRLLDLQSQNSLDQLQNK 42 (422)
Q Consensus 11 IE~LP~ELqR~ltlIRELD~~~q~~~~~ld~~ 42 (422)
|++||.||+..+.-|=+-|-.......++-+.
T Consensus 9 L~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 9 LDELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 78999999999988888888877766665554
No 167
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=24.05 E-value=17 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|.+. |+..|+.-- ...+.+.||.|+.....
T Consensus 33 CGH~-fC~~Cl~~~---~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQ-ICRFCWHRI---RTDENGLCPACRKPYPE 62 (78)
T ss_dssp TSCC-CCHHHHHHH---TTSSCSBCTTTCCBCSS
T ss_pred CCCC-cCHHHHHHH---HhcCCCCCCCCCCccCC
Confidence 6443 788887532 11256899999987653
No 168
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=23.98 E-value=16 Score=31.75 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=19.2
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|. -.|+..|+.-- ...+...||.|+.....
T Consensus 96 Cg-H~fC~~Ci~~~---~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 96 CF-HNVCKDCLQRS---FKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TS-CEEEHHHHHHH---HHTTCCBCTTTCCBCCT
T ss_pred CC-CchhHHHHHHH---HHhCCCcCCCCCccCCC
Confidence 64 35899997532 11245689999876543
No 169
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.41 E-value=5.9e+02 Score=25.74 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 14 LPQELRDRFTEMRLLDLQSQNSLDQLQNKVN 44 (422)
Q Consensus 14 LP~ELqR~ltlIRELD~~~q~~~~~ld~~~~ 44 (422)
+..+++..-.++...+...+....+++++..
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444444444444444444444444444333
No 170
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=58 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=22.4
Q ss_pred ccCCCceeeecCCCCCCcceecccCCcCC---------CCCCCCceecccCcchh
Q psy8390 360 QVAFGVMVACDSKNCPYEWYHCECVGIAP---------DNPPKGKWYCPLCLEKM 405 (422)
Q Consensus 360 ~~~~g~MI~CD~c~C~~~WfH~~CVgi~~---------~~~p~~~W~Cp~C~~~~ 405 (422)
+...+..|.-.+ .. ||..|..=.. --...++.||..|....
T Consensus 23 ~~I~~~~~~a~~----~~-~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 72 (79)
T 1x62_A 23 TGIVGVFVKLRD----RH-RHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72 (79)
T ss_dssp CCCCSSCEECSS----CE-ECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred CCccCcEEEECc----ce-eCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 444555565553 24 5887754110 01225778999887543
No 171
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=23.30 E-value=14 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=17.5
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMA 406 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k 406 (422)
|.+ .||..|+..-. .....||.|+....
T Consensus 24 C~H-~fc~~Ci~~~~----~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 24 CLH-AFCYVCITRWI----RQNPTCPLCKVPVE 51 (68)
T ss_dssp TTE-EESTTHHHHHH----HHSCSTTTTCCCCC
T ss_pred CCC-eeHHHHHHHHH----hCcCcCcCCChhhH
Confidence 543 49999985310 11257999987654
No 172
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.24 E-value=76 Score=20.18 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy8390 89 FFNKYTRKLEQDIQKFKLELE 109 (422)
Q Consensus 89 LVDrhiRrLD~dL~kf~~ELE 109 (422)
.+|..++||+.+.-+++-|..
T Consensus 5 kldanvkrlekevgklegeva 25 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHhhhhhhhh
Confidence 468889999999999887753
No 173
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.97 E-value=3.6e+02 Score=23.05 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhhhhchH------HHHHHHHH---HH
Q psy8390 19 RDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASM--TPEQRQREYENLLQEYNKPMIDSE------EKINLATQ---IQ 87 (422)
Q Consensus 19 qR~ltlIRELD~~~q~~~~~ld~~~~kfl~~~~s~--~~ee~~~~~~~I~~~~~ka~elaD------EKV~LA~q---~y 87 (422)
+..++.+..|+..++.++..-+++.++--..+.+. .-.+....+..|.+.+.++.+..+ +==.|+.+ ++
T Consensus 5 ~~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~ 84 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 44567777888888877776666644432221110 011222234455555555544333 22233333 23
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8390 88 EFFNKYTRKLEQDIQKFKL 106 (422)
Q Consensus 88 dLVDrhiRrLD~dL~kf~~ 106 (422)
--||+-|+....-|..|+.
T Consensus 85 ~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 85 KKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544
No 174
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.58 E-value=3e+02 Score=22.04 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhchHH----HHHH--HHHHHHHHHHHHHHHHH
Q psy8390 26 RLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEE----KINL--ATQIQEFFNKYTRKLEQ 99 (422)
Q Consensus 26 RELD~~~q~~~~~ld~~~~kfl~~~~s~~~ee~~~~~~~I~~~~~ka~elaDE----KV~L--A~q~ydLVDrhiRrLD~ 99 (422)
...+..+..+..+|...+..+ .....+++...+..|...+.++.++-+. .-.+ -...--.+...+|.--.
T Consensus 4 ~~YE~df~~~~~~i~~~l~~~----~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~ 79 (97)
T 3onj_A 4 ISYESDFKTTLEQAKASLAEA----PSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344555666666666666543 2445677777788887777777666542 2223 11222344455555556
Q ss_pred HHHH-HHHHHh
Q psy8390 100 DIQK-FKLELE 109 (422)
Q Consensus 100 dL~k-f~~ELE 109 (422)
+|.+ |+.++.
T Consensus 80 dl~~~lk~~lk 90 (97)
T 3onj_A 80 TIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6666 665554
No 175
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=22.44 E-value=7.3e+02 Score=26.47 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 33 QNSLDQLQNKVNQFYQMAASMT--PEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKL 106 (422)
Q Consensus 33 q~~~~~ld~~~~kfl~~~~s~~--~ee~~~~~~~I~~~~~ka~elaDEKV~LA~q~ydLVDrhiRrLD~dL~kf~~ 106 (422)
.+++.+|......|... ++.. ..+++..+..|...|....++.. ++.-..+-|.=+...+.+|..+...|-.
T Consensus 629 ~~ll~~i~~~~~~f~~~-~~~~~~~~~re~~~~~l~~ay~~y~el~~-~l~eG~~FY~~L~~~~~~~~~~~~df~~ 702 (704)
T 2xs1_A 629 EGLLKNIQVSHQEFSKM-KQSNNEANLREEVLKNLATAYDNFVELVA-NLKEGTKFYNELTEILVRFQNKCSDIVF 702 (704)
T ss_dssp HHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666677653 3333 45677788899999988887765 5888999999999999999999888854
No 176
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=22.18 E-value=2.2e+02 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=20.3
Q ss_pred HhhcChHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy8390 10 LVEILPQELRDRFTE-MRLLDLQSQNSLDQLQN 41 (422)
Q Consensus 10 ~IE~LP~ELqR~ltl-IRELD~~~q~~~~~ld~ 41 (422)
..+.||.|+|..|.. .++.-....+...+.++
T Consensus 260 ~~~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~ 292 (361)
T 2zzv_A 260 RWRSLPKPLQERFIAAVHEYSWIHYAGIQKANL 292 (361)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346899999999888 45554444444443333
No 177
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.15 E-value=60 Score=26.35 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=9.2
Q ss_pred CceecccCcch
Q psy8390 394 GKWYCPLCLEK 404 (422)
Q Consensus 394 ~~W~Cp~C~~~ 404 (422)
++|.||.|...
T Consensus 67 ddW~CPvCga~ 77 (87)
T 1s24_A 67 DDWCCPDCGAT 77 (87)
T ss_dssp TTCCCSSSCCC
T ss_pred CCCCCCCCCCC
Confidence 57999999864
No 178
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.80 E-value=14 Score=31.11 Aligned_cols=52 Identities=13% Similarity=0.316 Sum_probs=31.2
Q ss_pred hhcccccCC--CceeeecCCCCCCcceecccCCcCCCCCCCCceecccCcchhccc
Q psy8390 355 TIFCSQVAF--GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAAS 408 (422)
Q Consensus 355 ~~~C~~~~~--g~MI~CD~c~C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~r 408 (422)
|++|+..-. ...-.||. |.++-|...||--.....-.+-|||.+|....|.|
T Consensus 32 C~iCDs~Vrp~~~VrICde--Cs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lEKDR 85 (109)
T 2k0a_A 32 CPICDSYVRPKRKVRVCEN--CSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDK 85 (109)
T ss_dssp CTTTCCCCCCCEECEEEHH--HHTSSTTSBCTTTSSSBCCEECEECHHHHHHTSTT
T ss_pred ccccCCccCCcceEEECCc--CCCCCcCCceEEcCCCCCcccceehHhhhhhhccc
Confidence 777744211 23334884 76666778887533112234679999999776644
No 179
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=21.58 E-value=1.1e+02 Score=30.86 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8390 7 YIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQ 40 (422)
Q Consensus 7 yLE~IE~LP~ELqR~ltlIRELD~~~q~~~~~ld 40 (422)
|-+.++.||.++++++..|++|..++..+-.+..
T Consensus 40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~ 73 (359)
T 3fs3_A 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFE 73 (359)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999988777765554443
No 180
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.56 E-value=55 Score=25.22 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=22.0
Q ss_pred ccCCCceeeecCCCCCCcceecccCCcC-----CCC----CCCCceecccCcchh
Q psy8390 360 QVAFGVMVACDSKNCPYEWYHCECVGIA-----PDN----PPKGKWYCPLCLEKM 405 (422)
Q Consensus 360 ~~~~g~MI~CD~c~C~~~WfH~~CVgi~-----~~~----~p~~~W~Cp~C~~~~ 405 (422)
+...+..|.-.+ .. ||..|..=. ... ...++.||..|....
T Consensus 33 ~~I~~~~~~a~~----~~-~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 33 SGIVGAVVKARD----KY-RHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CBCCSCCEESSS----CE-ECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CEecccEEEECC----ce-ECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 445555555553 23 588774411 111 125678999887543
No 181
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.64 E-value=87 Score=24.19 Aligned_cols=13 Identities=23% Similarity=0.746 Sum_probs=10.1
Q ss_pred CCceecccCcchh
Q psy8390 393 KGKWYCPLCLEKM 405 (422)
Q Consensus 393 ~~~W~Cp~C~~~~ 405 (422)
.++|.||.|....
T Consensus 38 Pddw~CP~Cga~K 50 (70)
T 1dx8_A 38 SDSFMCPACRSPK 50 (70)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCCCCCCCH
Confidence 3579999998743
No 182
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.52 E-value=21 Score=25.84 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=18.8
Q ss_pred CCCcceecccCCcCCCCCCCCceecccCcchhcc
Q psy8390 374 CPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA 407 (422)
Q Consensus 374 C~~~WfH~~CVgi~~~~~p~~~W~Cp~C~~~~k~ 407 (422)
|.+. ||..|+.-- ...+...||.|+....+
T Consensus 26 CgH~-fC~~Ci~~~---~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 26 CGHT-LCESCVDLL---FVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCC-EEHHHHHHH---HHTTSSSCTTTCCCCSS
T ss_pred CCCH-hHHHHHHHH---HHcCCCcCCCCCCcccc
Confidence 5433 999998532 01235689999876643
No 183
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.48 E-value=1.4e+02 Score=30.29 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8390 90 FNKYTRKLEQDIQKFKLELEA 110 (422)
Q Consensus 90 VDrhiRrLD~dL~kf~~ELEa 110 (422)
|...|..|+.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 80 LKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766665
No 184
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.43 E-value=71 Score=25.56 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.7
Q ss_pred CceecccCcchh
Q psy8390 394 GKWYCPLCLEKM 405 (422)
Q Consensus 394 ~~W~Cp~C~~~~ 405 (422)
++|.||.|....
T Consensus 59 ddW~CPvCga~K 70 (81)
T 2kn9_A 59 DDWSCPDCGAAK 70 (81)
T ss_dssp TTCCCTTTCCCG
T ss_pred CCCcCCCCCCCH
Confidence 589999998643
No 185
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.23 E-value=5e+02 Score=26.48 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy8390 61 EYENLLQEYNKPMIDSEEKINLATQIQE 88 (422)
Q Consensus 61 ~~~~I~~~~~ka~elaDEKV~LA~q~yd 88 (422)
.+..|+..+.+.+....+.+.++.+=..
T Consensus 60 ~v~~ik~~~~~~q~~~~~n~~~~~q~Sk 87 (411)
T 3ghg_C 60 LIKAIQLTYNPDESSKPNMIDAATLKSR 87 (411)
T ss_dssp HHHHHHHHHCTTTCCCTTCHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCcchhhHHHHHH
Confidence 3445555555555555555555544444
No 186
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.18 E-value=75 Score=24.19 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.7
Q ss_pred CCceecccCcchh
Q psy8390 393 KGKWYCPLCLEKM 405 (422)
Q Consensus 393 ~~~W~Cp~C~~~~ 405 (422)
+++.||..|....
T Consensus 63 ~g~~yC~~~y~~~ 75 (82)
T 2co8_A 63 DGHFYCLQHLPQT 75 (82)
T ss_dssp TCCCEETTTCCCC
T ss_pred CCEEEChHHHHhh
Confidence 5788999887543
Done!