RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8390
(422 letters)
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour
suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Length = 104
Score = 98.4 bits (245), Expect = 2e-25
Identities = 28/101 (27%), Positives = 56/101 (55%)
Query: 1 MLYLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQR 60
+YLE Y++ +E LP EL+ F MR LD ++++ ++ ++ A S++ E++
Sbjct: 3 GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLA 62
Query: 61 EYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDI 101
+ + + Y K ++K+ LA Q E +K+ R+L+ D+
Sbjct: 63 LLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDL 103
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 95.3 bits (237), Expect = 1e-24
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWY 397
YC C+QV++G MV CD+++CP EW+H CVG+ PKGKWY
Sbjct: 4 GSSGYC-------------ICNQVSYGEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWY 48
Query: 398 CPLCLEKMAASKANHYGGSSR 418
CP C M + H G S
Sbjct: 49 CPQCTAAMKRRGSRHKSGPSS 69
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 93.4 bits (232), Expect = 5e-24
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 331 MDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDN 390
MD P+EP YC C QV++G M+ CD+ +C EW+H CVG+
Sbjct: 1 MDMPVDPNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFHFACVGL--TT 45
Query: 391 PPKGKWYCPLCLEK 404
P+GKW+CP C ++
Sbjct: 46 KPRGKWFCPRCSQE 59
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 93.5 bits (232), Expect = 6e-24
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 19/90 (21%)
Query: 321 GSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYH 380
GS+ +G+ +D P+EP YC C QV++G M+ CD+ +C EW+H
Sbjct: 1 GSSGSSGDMPVD----PNEPTYC-------------LCHQVSYGEMIGCDNPDCSIEWFH 43
Query: 381 CECVGIAPDNPPKGKWYCPLCLEKMAASKA 410
CVG+ P+GKW+CP C ++ S
Sbjct: 44 FACVGL--TTKPRGKWFCPRCSQESGPSSG 71
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 91.3 bits (226), Expect = 6e-23
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 307 GSTSAAAPMEDLAAGSALGAGEEEM--DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFG 364
GS+ ++ E G+ D P+EP YC C+ QV++G
Sbjct: 1 GSSGSSGSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCH-------------QVSYG 47
Query: 365 VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKA 410
M+ CD+ +C EW+H CVG+ P+GKW+CP C ++ S
Sbjct: 48 EMIGCDNPDCSIEWFHFACVGL--TTKPRGKWFCPRCSQESGPSSG 91
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 91.0 bits (225), Expect = 7e-23
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 328 EEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIA 387
+ ++ G E YC FC V++G MVACD+ CP+EW+H CVG+
Sbjct: 14 QGDVTEGNNNQEEVYC-------------FCRNVSYGPMVACDNPACPFEWFHYGCVGL- 59
Query: 388 PDNPPKGKWYCPLCLEKMAASKANHYGGSSRKHRK 422
PKGKWYC +++A ++ +K RK
Sbjct: 60 -KQAPKGKWYCSKDCKEIANQRS---KSKRQKRRK 90
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 89.5 bits (222), Expect = 1e-22
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 15/69 (21%)
Query: 336 GPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGK 395
G +EP YC C QV++G M+ CD+ +CP EW+H CV + PKGK
Sbjct: 5 GSNEPTYC-------------LCHQVSYGEMIGCDNPDCPIEWFHFACVDL--TTKPKGK 49
Query: 396 WYCPLCLEK 404
W+CP C+++
Sbjct: 50 WFCPRCVQE 58
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 88.8 bits (220), Expect = 2e-22
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 19/80 (23%)
Query: 326 AGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVG 385
E +D P+EP YC C+QV++G M+ CD++ CP EW+H CV
Sbjct: 1 GSEFAID----PNEPTYC-------------LCNQVSYGEMIGCDNEQCPIEWFHFSCVS 43
Query: 386 IAPDNPPKGKWYCPLCLEKM 405
+ PKGKWYCP C
Sbjct: 44 L--TYKPKGKWYCPKCRGDN 61
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 81.0 bits (200), Expect = 2e-19
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 321 GSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFG-VMVACDSKNCPYEWY 379
GS + D ++ C C++ G M+ CD +C +WY
Sbjct: 1 GSHMAMAYVIRDEW--GNQIWICPG------------CNKPDDGSPMIGCD--DCD-DWY 43
Query: 380 HCECVGIAPDNPPKGKWYCPLCLEKMAASKAN 411
H CVGI P + +W+CP C K+ K +
Sbjct: 44 HWPCVGIMAAPPEEMQWFCPKCANKIKKDKKH 75
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 61.5 bits (149), Expect = 2e-12
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 24/89 (26%)
Query: 321 GSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYH 380
GS+ +GE E+ YC C Q H N M+ CD C EW+H
Sbjct: 1 GSSGSSGECEVYD----PNALYCICR-QPHNN-----------RFMICCD--RC-EEWFH 41
Query: 381 CECVGIAPD-----NPPKGKWYCPLCLEK 404
+CVGI+ + CP C
Sbjct: 42 GDCVGISEARGRLLERNGEDYICPNCTIL 70
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 59.0 bits (142), Expect = 2e-11
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 18/82 (21%)
Query: 325 GAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECV 384
G+ + + P+ C C + + M+ C+ C W H CV
Sbjct: 1 GSSGSSGEDPFQPEIKVRCVCG------------NSLETDSMIQCEDPRCH-VWQHVGCV 47
Query: 385 GIAPDNPPKG-----KWYCPLC 401
+ +YC +C
Sbjct: 48 ILPDKPMDGNPPLPESFYCEIC 69
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 56.1 bits (135), Expect = 9e-11
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLC 401
V CD C EW+H CVG++P+ + C C
Sbjct: 18 WVQCD-GGC-DEWFHQVCVGVSPEMAENEDYICINC 51
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 56.0 bits (135), Expect = 1e-10
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
M+ C+ C + W H C I N P+ + C C +
Sbjct: 31 RPMIECN--EC-HTWIHLSCAKIRKSNVPE-VFVCQKCRDS 67
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 55.1 bits (133), Expect = 2e-10
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLE 403
M+ C+ C + W H C I N P+ + C C +
Sbjct: 16 RPMIECNE--C-HTWIHLSCAKIRKSNVPE-VFVCQKCRD 51
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 54.9 bits (132), Expect = 4e-10
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAP-DNPPKGKW 396
P YC C M+ CD C +W+H CVG+ + P +
Sbjct: 8 TVPVYCVCRLPYDVT-----------RFMIECD--AC-KDWFHGSCVGVEEEEAPDIDIY 53
Query: 397 YCPLCLEKMAASK 409
+CP C + S
Sbjct: 54 HCPNCEKTHGKST 66
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 53.5 bits (128), Expect = 1e-09
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 25/81 (30%)
Query: 327 GEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGI 386
G + P+ C C+ S + M+ C+ + C W H CV I
Sbjct: 1 GSDSFQ----PEAKVRCICS------------STMVNDSMIQCEDQRC-QVWQHLNCVLI 43
Query: 387 ------APDNPPKGKWYCPLC 401
+ + PP +YC LC
Sbjct: 44 PDKPGESAEVPP--VFYCELC 62
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 53.4 bits (128), Expect = 2e-09
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 338 DEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPK-GKW 396
P YC C + + N M+ C C +W+H CVGI +N +
Sbjct: 10 LVPVYCLCRQPYNVN-----------HFMIECG--LC-QDWFHGSCVGIEEENAVDIDIY 55
Query: 397 YCPLCLEKMAAS 408
+CP C S
Sbjct: 56 HCPDCEAVFGPS 67
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 51.6 bits (124), Expect = 4e-09
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
G ++ CD C YH +C+ PKG W CP C ++
Sbjct: 19 GQLLMCD--TCSRV-YHLDCLDPPLKTIPKGMWICPRCQDQ 56
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 51.2 bits (123), Expect = 5e-09
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASK 409
G ++ CD CP YH C+ P G+W CP C K
Sbjct: 19 GELLCCD--TCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 50.6 bits (121), Expect = 1e-08
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKA 410
M+ACD C W+H C+GI + K+ C C+E S
Sbjct: 31 MLACDG--C-GVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 50.2 bits (120), Expect = 1e-08
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPK-GKWYCPLCLEKMAASKA 410
+ CD C W+H +CV I P ++ CP C K S
Sbjct: 22 WICCDL--CE-MWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSSG 64
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 49.3 bits (118), Expect = 3e-08
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
G ++ CD CP YH C+ + P+GKW CP C ++
Sbjct: 21 GEIILCD--TCPRA-YHMVCLDPDMEKAPEGKWSCPHCEKE 58
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 49.0 bits (117), Expect = 4e-08
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
G ++ CD CP +H C+ P G W C CL+
Sbjct: 18 GELICCD--GCPRA-FHLACLSPPLREIPSGTWRCSSCLQA 55
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 48.2 bits (115), Expect = 6e-08
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405
G ++ CD C YH +C+ PKG W CP C ++M
Sbjct: 15 GQLLMCD--TCSRV-YHLDCLDPPLKTIPKGMWICPRCQDQM 53
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 48.9 bits (116), Expect = 1e-07
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKA 410
++ CD C YH C+ PP+G W C LC E + +
Sbjct: 73 LLFCDD--CDRG-YHMYCLNPPVAEPPEGSWSCHLCWELLKEKAS 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 1e-07
Identities = 69/474 (14%), Positives = 139/474 (29%), Gaps = 161/474 (33%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVN---QFYQMAASMTPEQRQREYENLLQEYNKP 72
+L+++F ++ + + D+ +F +S+ + +++ +L
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN----- 85
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKR---------- 122
+ EF N Y DI +L +N T +++ +
Sbjct: 86 -----------LCLTEFENCYLE--GNDIHALAAKLLQEND--TTLVKTKELIKNYITAR 130
Query: 123 -VTDSQQKENQRSNLV-AARSKM-----------NT------LRNL-RSELPNATDKRSV 162
+ + S L A NT LR+L ++ D
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 163 ASSALTQEYKYSN-----FNSGV--------ASSAGNN----AINYSLSNIGAGGMAITA 205
++ L++ + + F G+ S+ + +I S IG +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-----VIQ 245
Query: 206 AASQAIAATQQMKQGRRTASLKASYEAIHGGAGSSADIISKELAGAAQTAIAAIQ--DTH 263
A + A G L++ + G G S +++ A AIA ++
Sbjct: 246 LAHYVVTAKLL---GFTPGELRSY---LKGATGHSQGLVT-----AV--AIAETDSWESF 292
Query: 264 KKNKKKSV------GGSSNLSMGTINMNTTSSALHSLMMETSSSNSKLHGSTSAAAPMED 317
+ +K++ G + ++L ++E S N+ G S PM
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPN-------TSLPPSILEDSLENN--EGVPS---PM-- 338
Query: 318 LA-AGSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPY 376
L+ + ++ ++ + N QV + N
Sbjct: 339 LSISNLTQEQVQDYVN-----------KTNSHLPAG------KQVEISL------VN--- 372
Query: 377 EWYHCECVGIAPDN-----PPKGKWYCPLCLEKMAA------SKANHYGGSSRK 419
N PP+ + L L K A S+ S RK
Sbjct: 373 ----------GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF---SERK 413
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 47.6 bits (113), Expect = 2e-07
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHYG 414
++ CD C YH C+ P+G W CP C+ +G
Sbjct: 31 LLFCDG--CDDN-YHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFG 76
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 46.6 bits (110), Expect = 7e-07
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
M+ CDS C +H EC PKG W C +C +
Sbjct: 77 MLFCDS--CDRG-FHMECCDPPLTRMPKGMWICQICRPR 112
Score = 33.1 bits (75), Expect = 0.045
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 366 MVACDSKNCPYEWYHCECVGIAP---DNPPKGKWYCPLC 401
+++C C H C+ +P +W C C
Sbjct: 26 LISCAD--CG-NSGHPSCLKFSPELTVRVKALRWQCIEC 61
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 45.3 bits (107), Expect = 1e-06
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKAN 411
G +V C+ C + +H +C A + P +W C LC + +
Sbjct: 35 GDLVMCN--QCEFC-FHLDCHLPALQDVPGEEWSCSLCHVLPDLKEED 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 45.7 bits (108), Expect = 1e-06
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402
M+ CD+ C YH C+ + P W C C
Sbjct: 69 MLVCDT--CDKG-YHTFCLQPVMKSVPTNGWKCKNCR 102
Score = 40.0 bits (93), Expect = 2e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCP 399
C + C + YH C+ IA + W CP
Sbjct: 22 QFFCTT--CG-QHYHGMCLDIAVTPLKRAGWQCP 52
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 48.1 bits (113), Expect = 3e-06
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 15/116 (12%)
Query: 307 GSTSAAAPMEDLAAGSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVM 366
+ + AA AA +A+ + P P YC C + N M
Sbjct: 4 AAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVN-----------RFM 52
Query: 367 VACDSKNCPYEWYHCECVGIAPDNPPK-GKWYCPLCLEKMAASKANHYGGSSRKHR 421
+ CD C +W+H CVG+ + ++CP C +S R
Sbjct: 53 IECDI--CK-DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDY 105
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 42.9 bits (101), Expect = 5e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEK 404
++ CD C H EC G P+G+W C CL+
Sbjct: 33 ILFCD--MCNLA-VHQECYG--VPYIPEGQWLCRHCLQS 66
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 47.0 bits (110), Expect = 7e-06
Identities = 22/130 (16%), Positives = 32/130 (24%), Gaps = 20/130 (15%)
Query: 294 LMMETSSSNSKLHGSTSAAAPMEDLAAGSALGAGEEEMDTGYGPDEPRYCRCNEQAHYNF 353
ME + ED +E E + H+
Sbjct: 2 FHMEQKTPKESDRCGGCGKFTHEDDLIALEEEKKKE--------KEKPLMSKKKSHHHKK 53
Query: 354 YTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAP-DNPPKGKWYCPLCLEKMAASKANH 412
+ CDS C WYH C G+ + K++CP C+ S
Sbjct: 54 NDFQ--------WIGCDS--CQ-TWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYK 102
Query: 413 YGGSSRKHRK 422
R
Sbjct: 103 VVAPHRYRWY 112
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 41.9 bits (99), Expect = 8e-06
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCL 402
++ CD C +H C+ A P G+W CP C
Sbjct: 15 LILCDE--CNKA-FHLFCLRPALYEVPDGEWQCPACQ 48
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 42.0 bits (98), Expect = 1e-05
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 21/77 (27%)
Query: 334 GYGPDEPRY--CRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPD-- 389
G+ +P Y C + + + I C +C +W+H C G+
Sbjct: 1 GHSSSDPVYPCGICTNEVNDDQDAILCE-------ASCQ------KWFHRICTGMTETAY 47
Query: 390 ----NPPKGKWYCPLCL 402
W C C+
Sbjct: 48 GLLTAEASAVWGCDTCM 64
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 41.8 bits (98), Expect = 1e-05
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 366 MVACDSKNCPYEWYHCECVG---IAPDNPPKGKWYCPLCLEKMAASK 409
MV CD Y H C + KW C C+ +
Sbjct: 23 MVICDKCGQGY---HQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 66
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 42.3 bits (99), Expect = 1e-05
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 365 VMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHY 413
V++ CD C H EC G P+G+W C CL+ A H+
Sbjct: 41 VILFCD--MCNLA-VHQECYG--VPYIPEGQWLCRHCLQSRARPALEHH 84
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 44.6 bits (104), Expect = 4e-05
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 339 EPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPK-GKWY 397
P YC C M+ CD C +W+H CVG+ + ++
Sbjct: 4 VPVYCLCRLPYDVT-----------RFMIECDM--CQ-DWFHGSCVGVEEEKAADIDLYH 49
Query: 398 CPLCLEKMAASKANHYGGSSRKHRK 422
CP C S GSS+ H
Sbjct: 50 CPNCEVLHGPSIMKKRRGSSKGHDT 74
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 41.4 bits (96), Expect = 5e-05
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 19/68 (27%)
Query: 343 CRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPD------NPPKGKW 396
C + + + I C +C +W+H EC G+ W
Sbjct: 7 GACRSEVNDDQDAILCE-------ASCQ------KWFHRECTGMTESAYGLLTTEASAVW 53
Query: 397 YCPLCLEK 404
C LCL+
Sbjct: 54 ACDLCLKT 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-05
Identities = 36/231 (15%), Positives = 68/231 (29%), Gaps = 68/231 (29%)
Query: 4 LEDYIEL-VEIL-PQELRDRF---------------------------TEMRLLDLQSQN 34
L IE + +L P E R F M +++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 35 SLDQLQNKVNQFY----QMAASMTPEQRQREYENLLQEYN-----------KPMIDS--- 76
SL + Q K + + + E + +++ YN P +D
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 77 ------EEKINLATQIQEFFNKYT--RKLEQDIQKFKLELEADNSGITEIL------EKR 122
+ I ++ F + R LEQ I+ A + I L +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA-SGSILNTLQQLKFYKPY 533
Query: 123 VTDSQQKENQRSNLVAARSKMNTLRNLRSELPNATDKRSVASSALTQEYKY 173
+ D+ K + N + ++ L + L + + AL E +
Sbjct: 534 ICDNDPKYERLVNAI-----LDFLPKIEENLICSKYTDLL-RIALMAEDEA 578
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 42.5 bits (99), Expect = 6e-05
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHY 413
G +V C+ C +H +C A + P +W C LC + +
Sbjct: 12 GDLVMCNQ--CE-FCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGS 58
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 40.1 bits (93), Expect = 1e-04
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 366 MVACDSKNCPYEWYHCEC----VGIAPDNPPKGKWYCPLCLEKMAASKANH 412
+V C C YH +C V N P+ WYC C +M +
Sbjct: 33 LVECQ--ECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKN 80
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 39.0 bits (91), Expect = 1e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 364 GVMVACDSKNCPYEWYHCECVG-IAPDNPPKGKWYCPLCLEK 404
+ CD C +H C+ P + +WYCP C
Sbjct: 31 DKQLMCDE--CDMA-FHIYCLDPPLSSVPSEDEWYCPECRND 69
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 39.1 bits (91), Expect = 2e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 364 GVMVACDSKNCPYEWYHCECVG-IAPDNPPKGKWYCPLC 401
+ CD C +H C+ P + +WYCP C
Sbjct: 39 DKQLMCDE--CDMA-FHIYCLDPPLSSVPSEDEWYCPEC 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 40.1 bits (93), Expect = 3e-04
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 364 GVMVACDSKNCPYEWYHCECV------GIAPDNPPKGKWYCPLCLEK 404
++ C + NC + ECV G A + W C +C K
Sbjct: 89 REVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 39.0 bits (90), Expect = 0.001
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 364 GVMVACDSKNCPYEWYHCECVG-IAPDNPPKGKWYCPLCLEK 404
+ CD C +H C+ P + +WYCP C
Sbjct: 187 DKQLMCDE--CDMA-FHIYCLDPPLSSVPSEDEWYCPECRND 225
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 366 MVACDSKNCPYEWYHCECVGIAPDNPPKG-KWYCPLC 401
+ CD C YH C+ D P+ WYCP C
Sbjct: 41 QLLCDE--CNVA-YHIYCLNPPLDKVPEEEYWYCPSC 74
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 37.5 bits (87), Expect = 0.003
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 364 GVMVACDSKNCPYEWYHCECVGI-APDNPPKGKWYCPLC 401
+ CD C WYH CVGI + ++ CP C
Sbjct: 21 KFYIGCDR--CQ-NWYHGRCVGILQSEAELIDEYVCPQC 56
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 36.7 bits (84), Expect = 0.003
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNP-------PKGKWYCPLCLEKM 405
G ++ CD C + +C+ +WYC +C +
Sbjct: 73 GNLICCD--FCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 36.3 bits (83), Expect = 0.004
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 364 GVMVACDSKNCPYEWYHCECV-------GIAPDNPPKGKWYCPLCLEKM 405
G ++ CD C + +C+ ++ +WYC +C +
Sbjct: 67 GNLICCDF--CHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 36.9 bits (85), Expect = 0.005
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKM 405
G ++ C+ CP +H C N P G+W C C +
Sbjct: 14 GELLCCE--KCPK-VFHLSCHVPTLTNFPSGEWICTFCRDLS 52
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.9 bits (88), Expect = 0.007
Identities = 25/183 (13%), Positives = 66/183 (36%), Gaps = 20/183 (10%)
Query: 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYE 63
L + +E + + E + + Q + L+ ++ + + + + +
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKM----QQQMLDLEEQLEEEEAARQKL--QLEKVTAD 982
Query: 64 NLLQEYNKPMIDSEEKINLATQ----IQEFFNKYTRKLE------QDIQKFKLELEADNS 113
+++ ++ E++ N T+ ++E + T L +++ K K + E+ S
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Query: 114 GITEILEKRVTDSQQKENQRSNLVA----ARSKMNTLRNLRSELPNATDKRSVASSALTQ 169
+ L+K Q+ E + L ++ L+ +EL K+ A
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Query: 170 EYK 172
+
Sbjct: 1103 RLE 1105
Score = 35.6 bits (82), Expect = 0.038
Identities = 23/150 (15%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
Query: 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYE 63
L E + EL R + + + +L+ + + ++ A + + + E +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL--QAQIAELK 1087
Query: 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123
L + + + + ++ T + K R+LE I + +LE++ + + +++
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
Query: 124 TDSQQKENQRSNLVAARSKMNTLRNLRSEL 153
S++ E ++ L T + LR
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 34.8 bits (80), Expect = 0.066
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 1/118 (0%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQR-EYENLLQEYNKPMI 74
E D ++ L Q QL K + A + E Q+ ++E +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 75 DSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQKENQ 132
D +E + + K R L ++++ K ELE E R +D + +++
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 28.3 bits (63), Expect = 7.1
Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 9/145 (6%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYN----- 70
L+++ L +++ +L K + ++ M E R E E Q+
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM--EARIEEEEERSQQLQAEKKK 952
Query: 71 --KPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQ 128
+ M+D EE++ ++ + I+K + ++ ++ ++R ++
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 129 KENQRSNLVAARSKMNTLRNLRSEL 153
+ +NL K L L+++
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKH 1037
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 36.3 bits (83), Expect = 0.010
Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQ--RE 61
Y + + EL + R L+ + + L Q + + + E +
Sbjct: 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78
Query: 62 YENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEI--- 118
E+ + K + E+ ++ I+E +KY R+LEQ + A + +
Sbjct: 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138
Query: 119 ----LEKRVTDSQQKENQRSNLVAARSKMNTLRNLRSEL 153
+E+ + + + S LV+ + + R+LR EL
Sbjct: 139 LNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQEL 177
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 37.1 bits (85), Expect = 0.011
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 330 EMDTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPD 389
+ D G DE RC + + CS F C S C + + C+ D
Sbjct: 149 DPDCEDGSDEWP-QRCRGLYVFQGDSSPCSAFEF----HCLSGECIHSSWRCDGGPDCKD 203
Query: 390 NPPKGKWYCPLC 401
+ C
Sbjct: 204 KSDEENCAVATC 215
Score = 33.2 bits (75), Expect = 0.18
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 332 DTGYGPDEPRY-CRCNEQAHYNFYTIF-CSQVAFGVMVACDSKNCPYEWYHCECVGIAPD 389
D DEP C NE N C+ + G C CE + D
Sbjct: 280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 339
Query: 390 NPPKGKWYCPLC 401
+ L
Sbjct: 340 PDTCSQLCVNLE 351
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 36.9 bits (84), Expect = 0.012
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 364 GVMVACDSKNCPYEWYHCECV------GIAPDNPPKGKWYCPLC 401
++ C + +C Y ECV G + W C LC
Sbjct: 103 ETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.019
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 55 PEQRQREYENL--LQEYNKPMI---DSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELE 109
++ +E E++ +E + + D+ K ++ +K K +LE
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASK---------------VMEQEWREKAKKDLE 121
Query: 110 ADNSGITEILEKRVTDSQQKENQ 132
N +E +EK +++ +
Sbjct: 122 EWNQRQSEQVEKNKINNRIADKA 144
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 35.0 bits (79), Expect = 0.024
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDN-------PPKGKWYCPLCLEKMAASKANHY 413
M+ C C W H +C ++ + P + C C E+ A
Sbjct: 19 SKMMQCGK--CD-RWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWRLAL 72
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 35.3 bits (80), Expect = 0.035
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 3/150 (2%)
Query: 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYE 63
+ E V + QE+ + +E R L + +++ + Q++ A + +
Sbjct: 414 IRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK-QDEAAAALLAATTPQHHHVAERAD 472
Query: 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123
N SE + + ++ + + ++
Sbjct: 473 TDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCD 532
Query: 124 TDSQQKENQ--RSNLVAARSKMNTLRNLRS 151
+ ++ R N+ R K TLR +R
Sbjct: 533 ETKETAMDKIHRENVRQGRDKYKTLREIRK 562
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.4 bits (78), Expect = 0.072
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 56 EQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFN-KYTRKLEQDIQKFKLELEADNSG 114
Q+ + +E D+E ++ Q QE+F +Y Q+ + + +
Sbjct: 11 SQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQY-----QESLRIQAQFAQLGQL 65
Query: 115 ITEILEKRVTDSQQKENQRSNLVAARSKMNTLRNLRSEL 153
+ R T QQK+ + + TL+ R EL
Sbjct: 66 NPQERMSRETALQQKQVSLETWLQR--EAQTLQQYRVEL 102
Score = 34.0 bits (77), Expect = 0.094
Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQF---YQMAASMTPEQRQREYENLLQEYNKP 72
++ RF E+RL+ ++N L +LQ F YQ + + + Q N + ++
Sbjct: 15 LQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRE 74
Query: 73 MIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQKENQ 132
+++++L T +Q + + +K + + + + D + + +
Sbjct: 75 TALQQKQVSLETWLQREAQTLQQYRVELAEKHQ-----KTLQLLRKQQTIILDDELIQWK 129
Query: 133 RS 134
R
Sbjct: 130 RR 131
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 32.6 bits (74), Expect = 0.088
Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 14/121 (11%)
Query: 4 LEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYE 63
+ + L E + R +E+ Q LQ K+ + M A + +++
Sbjct: 18 VAQKTGVSNTLENEFKGRASEL-------QRMETDLQAKMKKLQSMKAGSDRTKLEKDVM 70
Query: 64 NLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRV 123
Q + + E+ + E K +++ ++ A++ I +++
Sbjct: 71 AQRQTFAQKAQAFEQDRA--RRSNEERGKLVTRIQTAVKSV-----ANSQDIDLVVDANA 123
Query: 124 T 124
Sbjct: 124 V 124
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 32.9 bits (74), Expect = 0.11
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 364 GVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAASKANHY 413
G ++ C+ CP +H C + P G W C C +
Sbjct: 17 GDLLCCEK--CPK-VFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDC 63
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix
bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Length = 196
Score = 32.6 bits (74), Expect = 0.14
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 18 LRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQR------EYENL----LQ 67
LR EM+ L Q+Q+ +++ ++ R Y ++
Sbjct: 29 LRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIR 88
Query: 68 EY---NKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITE 117
++ + + ++A + E+FN Y R L ++ + D + +
Sbjct: 89 ALRWEYGSILPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMK 141
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 32.9 bits (74), Expect = 0.21
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 332 DTGYGPDEPRYCRCNEQAHYNFYTIFCSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNP 391
D G DE RC + + CS F C S C + + C+ D
Sbjct: 169 DCEDGSDEWP-QRCRGLYVFQGDSSPCSAFEF----HCLSGECIHSSWRCDGGPDCKDKS 223
Score = 29.0 bits (64), Expect = 3.3
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 332 DTGYGPDEPRY-CRCNEQAHYNFYTIF-CSQVAFGVMVACDSKNCPYEWYHCECVGIAPD 389
D DEP C NE N C+ + G C CE + D
Sbjct: 298 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 357
Query: 390 NPPKGKWYCPLC 401
+ L
Sbjct: 358 PDTCSQLCVNLE 369
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 32.8 bits (75), Expect = 0.22
Identities = 9/70 (12%), Positives = 23/70 (32%)
Query: 62 YENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEK 121
+E + + + + + + + EQ I + K + + I ++
Sbjct: 322 FEEFFTDKETLDMARFDNLGIIKNDSLYQQELLELFEQKIGQMKTDRQWTKEEIVQLFFI 381
Query: 122 RVTDSQQKEN 131
+ D KE
Sbjct: 382 MIPDFGHKET 391
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 32.6 bits (73), Expect = 0.27
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMID 75
Q M LQ+ +L + + ++ A E Q + L + K
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA-----ESAQASAKMLHEMQRKNEQM 516
Query: 76 SEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQKENQR 133
E+K QE + T K+E D + E E + + E+ + + QKE++
Sbjct: 517 MEQKER---SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 571
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 32.0 bits (72), Expect = 0.33
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 12/90 (13%)
Query: 3 YLEDYIELVEILPQELRDRFT------EMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPE 56
+Y + P + E L S+ +L QN V + M+ ++ E
Sbjct: 263 CNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAE 322
Query: 57 ------QRQREYENLLQEYNKPMIDSEEKI 80
R +Y ++++ Y + + E I
Sbjct: 323 MNHFHSNRIYDYNSVIRLYLEQQVQFYETI 352
>3pr7_A USPA1; beta-roll and coiled-coil, adhesin, extracellular, membrane;
2.94A {Moraxella catarrhalis}
Length = 311
Score = 31.1 bits (70), Expect = 0.66
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 8/137 (5%)
Query: 177 NSGVASSAGNNAINYSLSNIGAGGMAITAAASQAIAATQQMKQGRRTASLKASYEAIHGG 236
G ++ AGG A + + A + Q S A +
Sbjct: 117 IENSTVGGGGYNQAKGRNSTVAGGYNNEATGTDSTIAGGRKNQATGKGSFAAGIDNKANA 176
Query: 237 AGSSADIISKELAGAAQTAIAAIQDTHKKNKKKSVGGSSNLSMGTINMNTTSSALHSLMM 296
+ A + G AI + N G + +G+ T + S+++
Sbjct: 177 DNAVALGNKNTIEGENSVAIGS-------NNTVKKGQQNVFILGSNTDTTNAQNG-SVLL 228
Query: 297 ETSSSNSKLHGSTSAAA 313
+++ SA
Sbjct: 229 GHNTAGKAATIVNSAEV 245
Score = 30.8 bits (69), Expect = 0.87
Identities = 19/170 (11%), Positives = 41/170 (24%), Gaps = 6/170 (3%)
Query: 164 SSALTQEYKYSNFNSGVASSAGNNAINYSLSNIGAGGMAITAAASQAIAATQQMKQGRRT 223
+ +Y + N S IG+GG I + +
Sbjct: 30 LTIGGGDYNKTKGRYSTIGGGLFNEATNEYSTIGSGGYNKAKGRYSTIGGGGYNEATNQY 89
Query: 224 ASLKASYEAIHGGAGSSADIISKELAGAAQTAIAAIQDTHKKNKKKSVGGSSNL------ 277
+++ G S+ A + + K + +V G N
Sbjct: 90 STIGGGDNNTAKGRYSTIGGGGYNEATIENSTVGGGGYNQAKGRNSTVAGGYNNEATGTD 149
Query: 278 SMGTINMNTTSSALHSLMMETSSSNSKLHGSTSAAAPMEDLAAGSALGAG 327
S ++ S + + + + A+G+
Sbjct: 150 STIAGGRKNQATGKGSFAAGIDNKANADNAVALGNKNTIEGENSVAIGSN 199
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc
finger, acetylation, cytoplasm, GTP-binding, HOST-virus
interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB:
3gj4_B*
Length = 92
Score = 29.1 bits (64), Expect = 0.69
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 358 CSQVAFGVMVACDSKNCPYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAAS 408
C+ G++ A S + P C+G+ P+G W C +CL + A
Sbjct: 28 CTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKAD 78
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.9 bits (67), Expect = 0.93
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 23 TEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINL 82
E R + +++ +L+ ++ S+ E + +Y +Y + + +K+
Sbjct: 33 AEERAELSEGKSA--ELEEELKTVTNNLKSL--EAQAEKYSQKEDKYEEEIKVLSDKLKE 88
Query: 83 ATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQKENQRSNLVAARSK 142
A EF + KLE+ I + EL A I E+ + E S ++
Sbjct: 89 AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148
Query: 143 MNTLRNL 149
+ L+ L
Sbjct: 149 VARLKKL 155
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 1.2
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 22/92 (23%)
Query: 183 SAGNNAINYSLSNIGAGGMAITAAASQAIAATQQMKQGRRTASLKASYEAIHGG------ 236
SA N + S S G + A A+ + + S+ E I G
Sbjct: 1085 SAWVNMLLISSS--GPIKTPVGACAT----SVE---------SVDIGVETILSGKARICI 1129
Query: 237 AGSSADIISKELAG-AAQTAIAAIQDTHKKNK 267
G D + A + + + +
Sbjct: 1130 VGGYDDFQEEGSFEFGNMKATSNTLEEFEHGR 1161
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 30.4 bits (69), Expect = 1.3
Identities = 18/166 (10%), Positives = 54/166 (32%), Gaps = 34/166 (20%)
Query: 16 QELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPM-- 73
+ L + ++ L+ + + +RQ++ LLQ+YN+ +
Sbjct: 832 IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE--LKRQKKIAVLLQKYNRILKK 889
Query: 74 --------------IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEIL 119
++ + I + + + + + +L + + +TE+
Sbjct: 890 LENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 949
Query: 120 EKRVTDSQQK----------------ENQRSNLVAARSKMNTLRNL 149
V + ++ E ++ L+A ++ + +L
Sbjct: 950 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 273 GSSNLSMGTINMNTTSSALHS---LMMETSSSNSKLH 306
G+ N + NMN+ SS H+ + +++ + +S+++
Sbjct: 202 GTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMN 238
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 30.0 bits (67), Expect = 1.4
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 55 PEQRQREYENLLQEYNKPMIDSEEKI--NLATQIQEFFNKYTRKLEQDIQKFKLELEADN 112
P + E+E L++ Y+ P+ + EE+I L ++ R+L + + + E + ++
Sbjct: 163 PPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPES 222
Query: 113 SGITEILEKRVTDSQQKENQRSNLVAARSKM 143
SGI + + V + + E V R ++
Sbjct: 223 SGIYSLWSRVVVNIEYDERTAKRHVKRRDRL 253
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H
helix, HHH motif, three helix bundle, methanopyrus
kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP:
a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB:
2csd_A
Length = 519
Score = 29.7 bits (66), Expect = 2.1
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 55 PEQRQREYENLLQEYNKPMIDSEEKI--NLATQIQEFFNKYTRKLEQDIQKFKLELEADN 112
P + E+E L++ Y+ P+ + EE+I L ++ R+L + + + E + ++
Sbjct: 163 PPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPES 222
Query: 113 SGITEILEKRVTDSQQKENQRSNLVAARSKM 143
SGI + + V + + E V R ++
Sbjct: 223 SGIYSLWSRVVVNIEYDERTAKRHVKRRDRL 253
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 195
Score = 29.0 bits (65), Expect = 2.4
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 232 AIHGGAGSSADIISKELAGAAQTAI-AAIQDTHKKNKKKSVGGSS 275
A+HGGAG + E + + +Q + K
Sbjct: 10 ALHGGAGDIPFSLPPERRKPREEGLRHCLQIGVEALKA---QKPP 51
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 29.5 bits (66), Expect = 2.5
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 198 AGGMAITAAASQAIAATQQMKQGRRTASLKASYE---AIHGGAGSSADIISKELAGAAQT 254
+ G + + +SQ A K+ S K +H GAG S+ A +
Sbjct: 8 SSGEGLPSRSSQVSAGKITAKELETKQSYKEKRGGFVLVHAGAGY----HSESKAKEYKH 63
Query: 255 AI-AAIQDTHKKNKKKSVGGSS 275
A Q +K + G +
Sbjct: 64 VCKRACQKAIEKLQA---GALA 82
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 2.7
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 29 DLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKI-NLATQIQ 87
D + + + + K N+F E RQ + ++E + ++E+++ +++
Sbjct: 314 DSKPFSLQETYEAKRNEFLGELQKKEEEMRQM-FVQRVKEKEAELKEAEKELHEKFDRLK 372
Query: 88 EFFNKYTRKLEQDIQKFKLELEADNSGITEILEKRVTDSQQKENQ 132
+ +KLE + E+ A T + SQ +Q
Sbjct: 373 KLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQ 417
Score = 27.8 bits (61), Expect = 8.0
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 16 QELRDRFTEMRLLDLQSQNSLD----QLQNKVNQFYQMAASMTPEQRQREYENLLQEYNK 71
+EL ++F ++ L + L+ L ++VN F Q + Q Q Q +
Sbjct: 362 KELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKR 421
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 3.0
Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 22/158 (13%)
Query: 16 QELRDRFTEM--RLLDLQSQNS-----LDQLQNKVNQFYQMAASMTPEQRQREYENLLQE 68
L ++ ++ ++ + + ++ L+ + + S +R R E +
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD--VERLRMSEEEAKN 981
Query: 69 YNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEI---------- 118
++ +E+I + + +E+ K+K E E S + E
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
Query: 119 LEKRVTD--SQQKENQRSNLVAARSKMNT-LRNLRSEL 153
L +R+ D + E LV ++ L + R
Sbjct: 1042 LNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold,
UDP sugar pyrophospho transferase; 2.03A {Leishmania
major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Length = 630
Score = 29.1 bits (64), Expect = 3.5
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 63 ENLLQEYNKPM-IDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGI 115
+L + + + + +E +I L T + F N Y + Q I+ L ++ +
Sbjct: 24 GHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEV 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.8
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 21/47 (44%)
Query: 78 EKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNS----GITEILE 120
EK Q +KL+ L+L AD+S I +E
Sbjct: 18 EK-------QAL-----KKLQAS-----LKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 4.5
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 304 KLHGSTSAAAPMEDLAAGSALGAGEE 329
KL S A D A A+ A E
Sbjct: 24 KLQASLKLYAD--DSAPALAIKATME 47
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 28.5 bits (63), Expect = 4.3
Identities = 16/120 (13%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 29 DLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREYENLLQEYNKPMIDSEEKINLATQIQE 88
+ ++S++ + ++ ++Q + + REY+ L +EY + + +++ + E
Sbjct: 6 QVVKEDSVEAVGAQLKVYHQQY-----QDKSREYDQLYEEYTR----TSQELQMKRTAIE 56
Query: 89 FFNKYTRKLEQDIQKF--KLELEADNSGITEILEKRVTDSQQKENQRSNLVAARSKMNTL 146
FN+ + E+ Q + + ++ E +S + L
Sbjct: 57 AFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKL 116
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 28.3 bits (63), Expect = 5.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 359 SQVAFGVMVACDSKNCPYEWYHCECVGIAPD 389
S+VA+ + EW CE + + D
Sbjct: 392 SEVAYKP----RRGSADGEWIQCEVLKVVAD 418
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 28.1 bits (63), Expect = 5.8
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 375 PYEWYHCECVGIAPDNPPKGKWYCPLCLEK------MAASKANHYGGSS 417
PY CE P G+ P C + + HYG +S
Sbjct: 165 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNS 213
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 28.3 bits (62), Expect = 5.9
Identities = 15/100 (15%), Positives = 41/100 (41%)
Query: 54 TPEQRQREYENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNS 113
++Q+ E LQ+ K + D E+K+ + +Q+ F+ + L+ L +
Sbjct: 10 VVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSV 69
Query: 114 GITEILEKRVTDSQQKENQRSNLVAARSKMNTLRNLRSEL 153
++ + + + +RS + ++ + ++ L
Sbjct: 70 TRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTL 109
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein
structure initiative, midwest center for structural
genomics, kinase; 2.30A {Pseudomonas syringae PV}
Length = 228
Score = 27.7 bits (62), Expect = 6.2
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 6 DYIELVEILPQELRDRFTE 24
+ L+++ P+EL +R +
Sbjct: 157 FDLVLIDLPPRELLERLRD 175
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.1 bits (62), Expect = 6.4
Identities = 11/70 (15%), Positives = 27/70 (38%)
Query: 273 GSSNLSMGTINMNTTSSALHSLMMETSSSNSKLHGSTSAAAPMEDLAAGSALGAGEEEMD 332
S+ + +++ + S ++++ S+++ G T+ A GE
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS 1532
Query: 333 TGYGPDEPRY 342
G+G P +
Sbjct: 1533 PGFGVSSPGF 1542
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 27.9 bits (61), Expect = 7.5
Identities = 26/151 (17%), Positives = 58/151 (38%), Gaps = 13/151 (8%)
Query: 3 YLEDYIELVEILPQELRDRFTEMRLLDLQSQNSLDQLQNKVNQFYQMAASMTPEQRQREY 62
YL ++E + F +R DL L QL ++ ++F + ++
Sbjct: 33 YLAQWLEKQDWEHAANDVSFATIRFHDL-----LSQLDDQYSRFSLENNFLLQHNIRKSK 87
Query: 63 ENLLQEYNKPMIDSEEKINLATQIQEFFNKYTRKLEQDIQKFKLELEADNSGITEILEKR 122
NL + E+ I ++ I + + LE + + + S T +L+K+
Sbjct: 88 RNLQDNF------QEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQS--TVMLDKQ 139
Query: 123 VTDSQQKENQRSNLVAARSKMNTLRNLRSEL 153
+ N + ++ ++ +L +L+ E
Sbjct: 140 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEY 170
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 27.6 bits (62), Expect = 7.6
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 375 PYEWYHCECVGIAPDNPPKGKWYCPLCLEKMAA------SKANHYGGSS 417
PY CE P G+ P C + + HYG +S
Sbjct: 108 PYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNS 156
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase,
autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia
coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Length = 177
Score = 27.0 bits (60), Expect = 9.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 232 AIHGGAGS-SADIISKELAGAAQTAI-AAIQDTHKKNKKKSVGGSS 275
AIHGGAG+ S +S + A+ A ++ K + G S+
Sbjct: 6 AIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEA---GESA 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.125 0.348
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,979,120
Number of extensions: 350793
Number of successful extensions: 1026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 152
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)