BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8393
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
+++ ALK+M+NFN K S EPVWK+LI+DR GQDIISP+LS +LR++G+TL L
Sbjct: 25 RQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 81
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 32.0 bits (71), Expect = 0.086, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 37 LSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
+ E +WK+LI D IS VL NDL + G+T+
Sbjct: 51 FNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITV 87
>pdb|3PTY|A Chain A, Crystal Structure Of The C-Terminal Extracellular Domain
Of Mycobacterium Tuberculosis Embc
Length = 406
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 42 PVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSA 78
P W+IL DR G + SPV+ N LG+T L A
Sbjct: 289 PKWRILP-DRFGAEANSPVMDHNGGGPLGITELLMRA 324
>pdb|2AR5|A Chain A, Crystal Structure Of The Mammalian C2alpha-Pi3 Kinase
Px-Domain
pdb|2REA|A Chain A, Crystal Structures Of C2alpha-Pi3 Kinase Px-Domain
Domain Indicate Conformational Change Associated With
Ligand Binding.
pdb|2RED|A Chain A, Crystal Structures Of C2alpha-pi3 Kinase Px-domain
Domain Indicate Conformational Change Associated With
Ligand Binding
Length = 121
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 18 IQKSYALKQMMNFNEVQSKLSSSEPVWKILIF 49
I+ S+ + F E+ +KLS P+WK+ F
Sbjct: 35 IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGF 66
>pdb|2IWL|X Chain X, Structure Of The Px Domain Of Phosphoinositide 3-Kinase-
C2alpha
Length = 140
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 18 IQKSYALKQMMNFNEVQSKLSSSEPVWKILIF 49
I+ S+ + F E+ +KLS P+WK+ F
Sbjct: 50 IEPSFVFRTFDEFQELHNKLSIIFPLWKLPGF 81
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 9 GQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRC-------GQDIISPVL 61
G +K + I+K LK N + + EP+ K+L F + G D + +
Sbjct: 46 GVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIF 105
Query: 62 SKNDLRELGVT 72
+K LR+ G+T
Sbjct: 106 AKYALRDAGIT 116
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 6 IGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKND 65
+ LG+ + GV ++ S AL+ + E+ SKL S D CG V+S ND
Sbjct: 80 LNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS----------DLCGT-----VMSTND 124
Query: 66 LRE 68
+ +
Sbjct: 125 VEK 127
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 44 WKILIFDRCGQDIISPVLSKNDLRELGVTL 73
WK+L+ D+ +IS +++ +LGVT+
Sbjct: 25 WKVLVVDKPALRMISECARMSEILDLGVTV 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,540,344
Number of Sequences: 62578
Number of extensions: 80519
Number of successful extensions: 225
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 11
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)