Query psy8393
Match_columns 98
No_of_seqs 103 out of 192
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 17:29:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1301|consensus 99.9 2.3E-28 5.1E-33 208.5 6.4 77 13-89 9-88 (621)
2 COG5158 SEC1 Proteins involved 99.4 4.7E-13 1E-17 115.2 4.6 66 14-86 2-67 (582)
3 PF00995 Sec1: Sec1 family; I 99.0 5.3E-11 1.2E-15 96.5 -1.6 48 44-91 1-50 (564)
4 KOG1300|consensus 98.6 3.7E-08 8.1E-13 85.5 3.2 48 42-89 22-71 (593)
5 KOG1299|consensus 87.7 0.74 1.6E-05 40.5 3.9 55 21-84 8-63 (549)
6 COG3845 ABC-type uncharacteriz 48.7 29 0.00062 30.6 4.2 52 18-82 145-202 (501)
7 PF04432 FrhB_FdhB_C: Coenzyme 47.6 24 0.00053 25.1 3.1 48 18-72 13-61 (161)
8 cd03234 ABCG_White The White s 47.3 32 0.00069 25.1 3.7 39 45-85 163-208 (226)
9 PF02254 TrkA_N: TrkA-N domain 43.4 25 0.00054 22.6 2.4 24 44-74 22-45 (116)
10 PF11121 DUF2639: Protein of u 40.7 13 0.00029 22.5 0.7 13 63-75 9-21 (40)
11 cd03246 ABCC_Protease_Secretio 37.5 38 0.00083 23.8 2.8 51 16-80 99-156 (173)
12 cd00248 Mth938-like Mth938-lik 37.2 28 0.0006 23.8 2.0 24 2-26 54-77 (109)
13 cd01477 vWA_F09G8-8_type VWA F 35.2 35 0.00075 25.3 2.3 31 42-75 130-166 (193)
14 cd05560 Xcc1710_like Xcc1710_l 35.2 37 0.00081 23.2 2.3 23 3-26 55-77 (109)
15 PF13021 DUF3885: Domain of un 33.1 22 0.00047 21.0 0.8 12 48-59 3-14 (38)
16 PF07985 SRR1: SRR1; InterPro 32.6 1.1E+02 0.0024 18.7 4.0 42 2-51 1-42 (56)
17 COG0410 LivF ABC-type branched 32.2 85 0.0018 25.2 4.2 31 44-75 155-192 (237)
18 PRK06886 hypothetical protein; 32.0 34 0.00073 27.8 2.0 26 58-83 260-285 (329)
19 PF14090 HTH_39: Helix-turn-he 31.9 25 0.00053 22.1 0.9 21 53-73 24-44 (70)
20 PF09324 DUF1981: Domain of un 31.4 11 0.00024 24.8 -0.8 23 10-32 28-50 (86)
21 PF04430 DUF498: Protein of un 29.3 39 0.00085 22.8 1.7 24 2-26 55-78 (110)
22 cd03217 ABC_FeS_Assembly ABC-t 29.1 78 0.0017 22.8 3.3 53 15-81 106-165 (200)
23 PRK13643 cbiO cobalt transport 28.0 79 0.0017 24.3 3.3 34 45-80 164-204 (288)
24 COG2274 SunT ABC-type bacterio 27.6 64 0.0014 29.1 3.1 26 18-55 614-639 (709)
25 PF13809 Tubulin_2: Tubulin li 27.3 1.1E+02 0.0024 24.5 4.2 43 4-54 1-43 (345)
26 cd01473 vWA_CTRP CTRP for CS 26.1 65 0.0014 23.5 2.5 31 45-75 112-144 (192)
27 COG1129 MglA ABC-type sugar tr 25.9 1.2E+02 0.0026 26.7 4.3 35 44-78 164-203 (500)
28 COG1748 LYS9 Saccharopine dehy 25.5 37 0.0008 28.7 1.2 18 1-18 2-19 (389)
29 cd03262 ABC_HisP_GlnQ_permease 24.8 1.1E+02 0.0024 21.7 3.4 32 45-78 155-193 (213)
30 COG4598 HisP ABC-type histidin 24.4 1.1E+02 0.0025 24.7 3.7 46 19-76 158-208 (256)
31 PRK10982 galactose/methyl gala 24.4 1.8E+02 0.004 23.9 5.0 38 44-81 410-452 (491)
32 PRK13651 cobalt transporter AT 23.8 90 0.002 24.5 3.0 33 45-79 185-224 (305)
33 PRK11124 artP arginine transpo 23.5 86 0.0019 23.0 2.7 38 43-80 159-201 (242)
34 PTZ00393 protein tyrosine phos 23.4 72 0.0016 25.5 2.4 37 42-80 90-126 (241)
35 KOG4549|consensus 23.3 51 0.0011 24.8 1.5 25 44-75 41-65 (144)
36 COG1132 MdlB ABC-type multidru 23.2 99 0.0021 25.9 3.3 33 12-56 464-496 (567)
37 PRK09580 sufC cysteine desulfu 22.3 1.8E+02 0.0038 21.3 4.1 37 45-81 165-206 (248)
38 PHA02773 hypothetical protein; 22.1 97 0.0021 22.2 2.6 27 8-34 13-39 (112)
39 TIGR02633 xylG D-xylose ABC tr 22.1 1.9E+02 0.0041 23.8 4.7 36 45-80 423-463 (500)
40 PF04851 ResIII: Type III rest 22.1 51 0.0011 22.0 1.2 17 13-29 1-17 (184)
41 cd03238 ABC_UvrA The excision 22.0 1.8E+02 0.0039 21.2 4.1 56 15-80 89-149 (176)
42 PRK10619 histidine/lysine/argi 21.6 1.8E+02 0.0039 21.6 4.1 35 45-79 172-211 (257)
43 PF00239 Resolvase: Resolvase, 21.5 28 0.0006 23.1 -0.2 35 44-78 60-97 (141)
44 cd03213 ABCG_EPDR ABCG transpo 20.8 1.5E+02 0.0032 21.3 3.4 51 17-81 115-172 (194)
45 PF07247 AATase: Alcohol acety 20.6 1.6E+02 0.0035 23.9 3.9 13 41-53 124-136 (480)
46 PRK00421 murC UDP-N-acetylmura 20.6 2.4E+02 0.0051 23.1 4.9 49 2-75 9-57 (461)
47 PRK13634 cbiO cobalt transport 20.6 1.6E+02 0.0035 22.6 3.8 36 43-80 163-206 (290)
48 cd03770 SR_TndX_transposase Se 20.1 40 0.00087 23.3 0.3 28 49-76 77-105 (140)
49 COG0569 TrkA K+ transport syst 20.0 49 0.0011 25.0 0.8 18 1-18 1-18 (225)
No 1
>KOG1301|consensus
Probab=99.95 E-value=2.3e-28 Score=208.50 Aligned_cols=77 Identities=43% Similarity=0.631 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHHhhcCCCcCCcCCC-CCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHH
Q psy8393 13 KGVVIIQKSYALKQMMNFNEVQSKLSS-SEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALC 89 (98)
Q Consensus 13 ~~~Lre~Q~~aL~~MLnlN~~~~~~~~-~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~ 89 (98)
-.+|||||+.||++|||||+|..++.. .|++|||||||++||+||||+++|+||||+|||+|++|++.|+|+|. |+|
T Consensus 9 ~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAVY 88 (621)
T KOG1301|consen 9 AASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAVY 88 (621)
T ss_pred hhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeEE
Confidence 468999999999999999999777654 49999999999999999999999999999999999999999999874 555
No 2
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=99.36 E-value=4.7e-13 Score=115.22 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 14 GVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 14 ~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
++|+|.|++.|.++++.++|.+ .|||||+|+.+..|||+++++++|+++|||+|..|++.|+|+++
T Consensus 2 ~dl~e~q~~~i~~~i~~v~~~n-------~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~ 67 (582)
T COG5158 2 MDLLELQKNKILDEIFLVQPAN-------IWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISD 67 (582)
T ss_pred ccHHHHHHHHHHHHHHhcCCCc-------ceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCC
Confidence 5899999999999999987743 79999999999999999999999999999999999999999664
No 3
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=98.96 E-value=5.3e-11 Score=96.46 Aligned_cols=48 Identities=35% Similarity=0.497 Sum_probs=39.8
Q ss_pred eEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHHHH
Q psy8393 44 WKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALCLM 91 (98)
Q Consensus 44 WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~~~ 91 (98)
|||||+|+.+.+|||++++++||+++|||++..|++.|+|+|+ |+|+.
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i 50 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFI 50 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEE
Confidence 9999999999999999999999999999999999999999998 77754
No 4
>KOG1300|consensus
Probab=98.56 E-value=3.7e-08 Score=85.51 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=45.0
Q ss_pred CceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHH
Q psy8393 42 PVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALC 89 (98)
Q Consensus 42 ~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~ 89 (98)
..|||||+|+.+..|+|+.+++.|+++.|||+...|+++|||+|| |+|
T Consensus 22 g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY 71 (593)
T KOG1300|consen 22 GEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIY 71 (593)
T ss_pred CeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEE
Confidence 389999999999999999999999999999999999999999984 544
No 5
>KOG1299|consensus
Probab=87.66 E-value=0.74 Score=40.51 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccc-cchhh
Q psy8393 21 SYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAE-VLDEE 84 (98)
Q Consensus 21 ~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~-~Rep~ 84 (98)
+.-+.+|... .++.-|||.+|+.|+-|+|-++.=++|.+.-|-|...|++ .||.+
T Consensus 8 k~yi~~m~~~---------~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~ 63 (549)
T KOG1299|consen 8 KKYIEKMIQE---------SGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERI 63 (549)
T ss_pred HHHHHHHHHh---------cCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHh
Confidence 4456677662 2356899999999999999999999999999999999999 56554
No 6
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=48.65 E-value=29 Score=30.62 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecc------cchhHHhhcCceEEEeccccch
Q psy8393 18 IQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPV------LSKNDLRELGVTLFLYSAEVLD 82 (98)
Q Consensus 18 e~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISpl------LrV~DLR~~GVTLHl~L~~~Re 82 (98)
++|+=.|.+.|-.+ =++||||+. +.+++|. =.+..|++.|-|+.+--|+-.|
T Consensus 145 ~qQRVEIlKaLyr~------------a~iLILDEP-TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 145 EQQRVEILKALYRG------------ARLLILDEP-TAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred hhHHHHHHHHHhcC------------CCEEEEcCC-cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 45665566666543 368999999 4678883 3456899999999886666544
No 7
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=47.61 E-value=24 Score=25.06 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhh-cCce
Q psy8393 18 IQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRE-LGVT 72 (98)
Q Consensus 18 e~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~-~GVT 72 (98)
.-|+++|.+|+..+... ..+.++++|=+|..+.||-.--.-|.+ .|+.
T Consensus 13 PCqi~al~~~~~~~~~~-------~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~ 61 (161)
T PF04432_consen 13 PCQIAALRKLLKRNYEN-------RDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIK 61 (161)
T ss_pred cHHHHHHHHHHhhCccc-------CcceEEEEeEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999976542 246999999999999999887677776 3544
No 8
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=47.29 E-value=32 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=26.3
Q ss_pred EEEEEecCCC-------ceeecccchhHHhhcCceEEEeccccchhhh
Q psy8393 45 KILIFDRCGQ-------DIISPVLSKNDLRELGVTLFLYSAEVLDEEY 85 (98)
Q Consensus 45 KVLI~D~~~q-------dIISplLrV~DLR~~GVTLHl~L~~~Rep~~ 85 (98)
++|++|+.+. +.+..+++ ++.+.|.|+.+--++.++.+.
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~--~~~~~~~tiii~sh~~~~~~~ 208 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLS--QLARRNRIVILTIHQPRSDLF 208 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHH--HHHHCCCEEEEEecCCCHHHH
Confidence 8999999873 33444433 566679999887777655443
No 9
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=43.44 E-value=25 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.3
Q ss_pred eEEEEEecCCCceeecccchhHHhhcCceEE
Q psy8393 44 WKILIFDRCGQDIISPVLSKNDLRELGVTLF 74 (98)
Q Consensus 44 WKVLI~D~~~qdIISplLrV~DLR~~GVTLH 74 (98)
|+|.++|..-.. +..+++.|+..+
T Consensus 22 ~~vvvid~d~~~-------~~~~~~~~~~~i 45 (116)
T PF02254_consen 22 IDVVVIDRDPER-------VEELREEGVEVI 45 (116)
T ss_dssp SEEEEEESSHHH-------HHHHHHTTSEEE
T ss_pred CEEEEEECCcHH-------HHHHHhcccccc
Confidence 899999987654 677888886644
No 10
>PF11121 DUF2639: Protein of unknown function (DUF2639); InterPro: IPR022580 This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.
Probab=40.74 E-value=13 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=12.1
Q ss_pred hhHHhhcCceEEE
Q psy8393 63 KNDLRELGVTLFL 75 (98)
Q Consensus 63 V~DLR~~GVTLHl 75 (98)
|.+|++.||+-|.
T Consensus 9 V~eLKk~GI~~h~ 21 (40)
T PF11121_consen 9 VKELKKLGIRRHE 21 (40)
T ss_pred HHHHHHhCccccc
Confidence 7899999999987
No 11
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=37.51 E-value=38 Score=23.76 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCC-------ceeecccchhHHhhcCceEEEecccc
Q psy8393 16 VIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQ-------DIISPVLSKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 16 Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~q-------dIISplLrV~DLR~~GVTLHl~L~~~ 80 (98)
-=++|+-+|.+.|-.+ -+||++|+.+. +.+..++ .++++.|.|+.+--++.
T Consensus 99 ~G~~qrv~la~al~~~------------p~~lllDEPt~~LD~~~~~~l~~~l--~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 99 GGQRQRLGLARALYGN------------PRILVLDEPNSHLDVEGERALNQAI--AALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHHHHHhcC------------CCEEEEECCccccCHHHHHHHHHHH--HHHHhCCCEEEEEeCCH
Confidence 3456777777777632 37899998874 4444444 36677799987766654
No 12
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=37.24 E-value=28 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceeEEeecccccchHHHHHHHHHHH
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQ 26 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~ 26 (98)
..+|||.|+++.+ +.+..++.+.+
T Consensus 54 eiliiGTG~~~~~-~~~~~~~~l~~ 77 (109)
T cd00248 54 DILLIGTGAEIAF-LPRALRAALRA 77 (109)
T ss_pred CEEEEcCCCCCCc-CCHHHHHHHHH
Confidence 3689999999954 66666666665
No 13
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=35.24 E-value=35 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=20.1
Q ss_pred CceEEEEE--ecC---C-CceeecccchhHHhhcCceEEE
Q psy8393 42 PVWKILIF--DRC---G-QDIISPVLSKNDLRELGVTLFL 75 (98)
Q Consensus 42 ~~WKVLI~--D~~---~-qdIISplLrV~DLR~~GVTLHl 75 (98)
.+=||+|+ |.. + .+..+ -..+|++.|||+|.
T Consensus 130 ~v~kvvIllTDg~~~~~~~~~~~---~a~~l~~~GI~i~t 166 (193)
T cd01477 130 NYKKVVIVFASDYNDEGSNDPRP---IAARLKSTGIAIIT 166 (193)
T ss_pred CCCeEEEEEecCccCCCCCCHHH---HHHHHHHCCCEEEE
Confidence 35687776 742 2 23333 36789999999985
No 14
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=35.17 E-value=37 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=16.8
Q ss_pred eeEEeecccccchHHHHHHHHHHH
Q psy8393 3 CLIIGLGQTQKGVVIIQKSYALKQ 26 (98)
Q Consensus 3 ~~~~~~~~~~~~~Lre~Q~~aL~~ 26 (98)
.+|||.|+++.+- -...++.+.+
T Consensus 55 iliiGTG~~~~~~-~~~~~~~l~~ 77 (109)
T cd05560 55 VILLGTGERQRFP-PPALLAPLLA 77 (109)
T ss_pred EEEEecCCCCCcC-CHHHHHHHHH
Confidence 6899999999876 4555555555
No 15
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=33.13 E-value=22 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.8
Q ss_pred EEecCCCceeec
Q psy8393 48 IFDRCGQDIISP 59 (98)
Q Consensus 48 I~D~~~qdIISp 59 (98)
+||++|-+|+|.
T Consensus 3 ~YDDRGcdvia~ 14 (38)
T PF13021_consen 3 LYDDRGCDVIAN 14 (38)
T ss_pred cccCCCcEEeeC
Confidence 699999999985
No 16
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=32.63 E-value=1.1e+02 Score=18.65 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=31.0
Q ss_pred ceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEec
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDR 51 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~ 51 (98)
++..+|+|--+...---.|.+.+..+.+.-+ .+..+|-+||.
T Consensus 1 ~ivclGLGsf~~~~~a~~QLA~ll~l~~~l~--------~~~~~v~~yDP 42 (56)
T PF07985_consen 1 KIVCLGLGSFSSSRSARYQLALLLLLKEELS--------IPRDQVSIYDP 42 (56)
T ss_pred CEEEEEecCccccccHHHHHHHHHHHHHHhC--------CCCCcEEEECC
Confidence 3567899988877777789999988887322 12378999984
No 17
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=32.18 E-value=85 Score=25.19 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=23.5
Q ss_pred eEEEEEecCCCceeeccc------chhHHhhc-CceEEE
Q psy8393 44 WKILIFDRCGQDIISPVL------SKNDLREL-GVTLFL 75 (98)
Q Consensus 44 WKVLI~D~~~qdIISplL------rV~DLR~~-GVTLHl 75 (98)
=|+|++|+.+.- |||.+ .+.+|++. |+|+.+
T Consensus 155 PklLLLDEPs~G-LaP~iv~~I~~~i~~l~~~~g~tIlL 192 (237)
T COG0410 155 PKLLLLDEPSEG-LAPKIVEEIFEAIKELRKEGGMTILL 192 (237)
T ss_pred CCEEEecCCccC-cCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 489999999876 46765 36889966 777654
No 18
>PRK06886 hypothetical protein; Validated
Probab=32.00 E-value=34 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.4
Q ss_pred ecccchhHHhhcCceEEEeccccchh
Q psy8393 58 SPVLSKNDLRELGVTLFLYSAEVLDE 83 (98)
Q Consensus 58 SplLrV~DLR~~GVTLHl~L~~~Rep 83 (98)
.++-.|.+|++.||++.+--+..|+|
T Consensus 260 rGv~pv~eL~~aGV~V~lGtDnv~D~ 285 (329)
T PRK06886 260 NALTPADEMIPEGITVALGTDNICDY 285 (329)
T ss_pred CCCCCHHHHHHCCCeEEEecCCCccc
Confidence 46778999999999999999999976
No 19
>PF14090 HTH_39: Helix-turn-helix domain
Probab=31.86 E-value=25 Score=22.14 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.3
Q ss_pred CCceeecccchhHHhhcCceE
Q psy8393 53 GQDIISPVLSKNDLRELGVTL 73 (98)
Q Consensus 53 ~qdIISplLrV~DLR~~GVTL 73 (98)
--+|..|-=+|.|||+.|.-+
T Consensus 24 ~~gi~~~~aRI~eLR~~G~~I 44 (70)
T PF14090_consen 24 ELGIMRLAARISELRKKGYPI 44 (70)
T ss_pred HcCCCCHHHHHHHHHHcCCee
Confidence 346888999999999999743
No 20
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=31.35 E-value=11 Score=24.78 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=19.3
Q ss_pred ccccchHHHHHHHHHHHhhcCCC
Q psy8393 10 QTQKGVVIIQKSYALKQMMNFNE 32 (98)
Q Consensus 10 ~~~~~~Lre~Q~~aL~~MLnlN~ 32 (98)
.+++...|+.+.+++.+|++.+.
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~ 50 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRG 50 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhH
Confidence 34678899999999999999654
No 21
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=29.33 E-value=39 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=15.3
Q ss_pred ceeEEeecccccchHHHHHHHHHHH
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQ 26 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~ 26 (98)
..+|||.|+. ...+.+..++.+.+
T Consensus 55 e~liiGtG~~-~~~~~~~~~~~l~~ 78 (110)
T PF04430_consen 55 EVLIIGTGKR-QLFLPPELREYLRK 78 (110)
T ss_dssp SEEEEEETTS--SECTHHHHHHHHT
T ss_pred cEEEEccCCc-cccCCHHHHHHHHH
Confidence 3689999999 44455555555543
No 22
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=29.13 E-value=78 Score=22.78 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCce-------eecccchhHHhhcCceEEEeccccc
Q psy8393 15 VVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDI-------ISPVLSKNDLRELGVTLFLYSAEVL 81 (98)
Q Consensus 15 ~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdI-------ISplLrV~DLR~~GVTLHl~L~~~R 81 (98)
|-=++|+-+|.+.|-.++ ++|++|+.+..+ +..+++ ++.+.|.|+.+--+...
T Consensus 106 S~G~~qrv~laral~~~p------------~illlDEPt~~LD~~~~~~l~~~L~--~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 106 SGGEKKRNEILQLLLLEP------------DLAILDEPDSGLDIDALRLVAEVIN--KLREEGKSVLIITHYQR 165 (200)
T ss_pred CHHHHHHHHHHHHHhcCC------------CEEEEeCCCccCCHHHHHHHHHHHH--HHHHCCCEEEEEecCHH
Confidence 334677777777776432 589999887433 323332 45566888887666543
No 23
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.97 E-value=79 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=22.4
Q ss_pred EEEEEecCCCce-------eecccchhHHhhcCceEEEecccc
Q psy8393 45 KILIFDRCGQDI-------ISPVLSKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 45 KVLI~D~~~qdI-------ISplLrV~DLR~~GVTLHl~L~~~ 80 (98)
+||++|+.+... +.-++ .++.+.|.|+.+--++.
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l--~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLF--ESIHQSGQTVVLVTHLM 204 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHH--HHHHHCCCEEEEEecCH
Confidence 799999887433 33332 46666799987766553
No 24
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=27.64 E-value=64 Score=29.10 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCc
Q psy8393 18 IQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQD 55 (98)
Q Consensus 18 e~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qd 55 (98)
+||+=+|-|.|.-+ =||||+|+.|..
T Consensus 614 QrQrlalARaLl~~------------P~ILlLDEaTSa 639 (709)
T COG2274 614 QRQRLALARALLSK------------PKILLLDEATSA 639 (709)
T ss_pred HHHHHHHHHHhccC------------CCEEEEeCcccc
Confidence 58888899988854 379999998865
No 25
>PF13809 Tubulin_2: Tubulin like
Probab=27.33 E-value=1.1e+02 Score=24.45 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=28.8
Q ss_pred eEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCC
Q psy8393 4 LIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQ 54 (98)
Q Consensus 4 ~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~q 54 (98)
||||+|=|-+..|...=+....++-.+ +..+.|..|.+|....
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~--------~~~~~v~Fl~iDt~~~ 43 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGL--------ELPPCVQFLYIDTDEN 43 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCc--------CCCCcEEEEEEEcCcc
Confidence 689999998877765533333333222 1246799999998877
No 26
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=26.14 E-value=65 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEEecCCCceee-cccc-hhHHhhcCceEEE
Q psy8393 45 KILIFDRCGQDIIS-PVLS-KNDLRELGVTLFL 75 (98)
Q Consensus 45 KVLI~D~~~qdIIS-plLr-V~DLR~~GVTLHl 75 (98)
=||+-|-.+++--. .+.+ ..+||+.||+++.
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~ 144 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLV 144 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEE
Confidence 35556777765422 2323 4589999999875
No 27
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=25.90 E-value=1.2e+02 Score=26.68 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=25.2
Q ss_pred eEEEEEecCCCceee----ccc-chhHHhhcCceEEEecc
Q psy8393 44 WKILIFDRCGQDIIS----PVL-SKNDLRELGVTLFLYSA 78 (98)
Q Consensus 44 WKVLI~D~~~qdIIS----plL-rV~DLR~~GVTLHl~L~ 78 (98)
=||||+|+.|...=. -++ -|.+||+.||++.+=-|
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 479999999865321 122 36789999999987555
No 28
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.46 E-value=37 Score=28.69 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=13.9
Q ss_pred CceeEEeecccccchHHH
Q psy8393 1 MNCLIIGLGQTQKGVVII 18 (98)
Q Consensus 1 ~~~~~~~~~~~~~~~Lre 18 (98)
||+||||+|+.-+...+.
T Consensus 2 ~~ilviGaG~Vg~~va~~ 19 (389)
T COG1748 2 MKILVIGAGGVGSVVAHK 19 (389)
T ss_pred CcEEEECCchhHHHHHHH
Confidence 799999999876655444
No 29
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=24.80 E-value=1.1e+02 Score=21.75 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEecCCCce-------eecccchhHHhhcCceEEEecc
Q psy8393 45 KILIFDRCGQDI-------ISPVLSKNDLRELGVTLFLYSA 78 (98)
Q Consensus 45 KVLI~D~~~qdI-------ISplLrV~DLR~~GVTLHl~L~ 78 (98)
++|++|+.+..+ +.-+ +.++++.|.|+.+--+
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~--l~~~~~~~~tvi~~sh 193 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDV--MKDLAEEGMTMVVVTH 193 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHH--HHHHHHcCCEEEEEeC
Confidence 799999987543 2222 2356667988766444
No 30
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.40 E-value=1.1e+02 Score=24.69 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCce----eecccc-hhHHhhcCceEEEe
Q psy8393 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDI----ISPVLS-KNDLRELGVTLFLY 76 (98)
Q Consensus 19 ~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdI----ISplLr-V~DLR~~GVTLHl~ 76 (98)
.|+.+|.+-|..++ +|+.||+.|... +--+|+ +.||-+.|=|+.+-
T Consensus 158 QQR~aIARaLameP------------~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~V 208 (256)
T COG4598 158 QQRVAIARALAMEP------------EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVV 208 (256)
T ss_pred HHHHHHHHHHhcCC------------ceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 47888889888642 589999998753 333444 47999999998764
No 31
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=24.38 E-value=1.8e+02 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=25.1
Q ss_pred eEEEEEecCCCce--eeccc---chhHHhhcCceEEEeccccc
Q psy8393 44 WKILIFDRCGQDI--ISPVL---SKNDLRELGVTLFLYSAEVL 81 (98)
Q Consensus 44 WKVLI~D~~~qdI--ISplL---rV~DLR~~GVTLHl~L~~~R 81 (98)
=+||++|+.+..+ -+--. .+.+|.+.|.|+.+--|...
T Consensus 410 p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 410 PEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred CCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 3899999987643 22211 25677888999877666543
No 32
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=23.84 E-value=90 Score=24.51 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEEecCCCce-------eecccchhHHhhcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI-------ISPVLSKNDLRELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI-------ISplLrV~DLR~~GVTLHl~L~~ 79 (98)
++|++|+.+... +.-+ +.++++.|.|+.+--++
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~--l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEI--FDNLNKQGKTIILVTHD 224 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH--HHHHHHCCCEEEEEeeC
Confidence 899999987543 2222 24666779997664443
No 33
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=23.48 E-value=86 Score=23.00 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCce-eecccc----hhHHhhcCceEEEecccc
Q psy8393 43 VWKILIFDRCGQDI-ISPVLS----KNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 43 ~WKVLI~D~~~qdI-ISplLr----V~DLR~~GVTLHl~L~~~ 80 (98)
.-++||+|+.+..+ ....-. +.++++.|.|+.+--+..
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34899999987543 111111 345666798876655543
No 34
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.45 E-value=72 Score=25.52 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCceeecccchhHHhhcCceEEEecccc
Q psy8393 42 PVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 42 ~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~ 80 (98)
..-|.||+|..+.+-+. --+.+|+++|||-.+.+...
T Consensus 90 ~~~rfLi~~~P~~~~~~--~yl~eLk~~gV~~lVrlcE~ 126 (241)
T PTZ00393 90 GKIKILILDAPTNDLLP--LYIKEMKNYNVTDLVRTCER 126 (241)
T ss_pred CceeEEEeCCCCHHHHH--HHHHHHHHcCCCEEEECCCC
Confidence 35699999999988652 34488999999988877553
No 35
>KOG4549|consensus
Probab=23.35 E-value=51 Score=24.76 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.3
Q ss_pred eEEEEEecCCCceeecccchhHHhhcCceEEE
Q psy8393 44 WKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75 (98)
Q Consensus 44 WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl 75 (98)
.-.-+||+..+- ..||++.|||+..
T Consensus 41 ~e~~fY~Di~rI-------L~dLk~~GVtl~~ 65 (144)
T KOG4549|consen 41 EEMIFYDDIRRI-------LVDLKKLGVTLIH 65 (144)
T ss_pred ceeeeccchhHH-------HHHHHhcCcEEEE
Confidence 445566665543 4799999999853
No 36
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=23.22 E-value=99 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCce
Q psy8393 12 QKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDI 56 (98)
Q Consensus 12 ~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdI 56 (98)
..-|-=|||+=+|-|.|=-| + +|||+|+.|..+
T Consensus 464 ~~LSgGQrQrlaiARall~~----------~--~ILILDEaTSal 496 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRN----------P--PILILDEATSAL 496 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcC----------C--CEEEEecccccc
Confidence 34566688888888877643 2 799999998765
No 37
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=22.26 E-value=1.8e+02 Score=21.30 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=23.8
Q ss_pred EEEEEecCCCce-eecccc----hhHHhhcCceEEEeccccc
Q psy8393 45 KILIFDRCGQDI-ISPVLS----KNDLRELGVTLFLYSAEVL 81 (98)
Q Consensus 45 KVLI~D~~~qdI-ISplLr----V~DLR~~GVTLHl~L~~~R 81 (98)
+||++|+.+..+ ....-. +.++++.|.|+.+--|+..
T Consensus 165 ~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 165 ELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 899999988654 111112 2367778999877666644
No 38
>PHA02773 hypothetical protein; Provisional
Probab=22.10 E-value=97 Score=22.19 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=22.8
Q ss_pred ecccccchHHHHHHHHHHHhhcCCCcC
Q psy8393 8 LGQTQKGVVIIQKSYALKQMMNFNEVQ 34 (98)
Q Consensus 8 ~~~~~~~~Lre~Q~~aL~~MLnlN~~~ 34 (98)
..|+..-+||.+|++.|.+...+.+..
T Consensus 13 ms~e~qi~lr~kqkell~rffeiae~d 39 (112)
T PHA02773 13 MSEEKQIKLRPKQKELLIRFFEIAEKD 39 (112)
T ss_pred hchhhceeechhhHHHHHHHHHHheec
Confidence 568888899999999999999876543
No 39
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=22.07 E-value=1.9e+02 Score=23.82 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=23.4
Q ss_pred EEEEEecCCCceeeccc-----chhHHhhcCceEEEecccc
Q psy8393 45 KILIFDRCGQDIISPVL-----SKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 45 KVLI~D~~~qdIISplL-----rV~DLR~~GVTLHl~L~~~ 80 (98)
+||++|+.+..+=...- -+.++++.|.|+.+--|+.
T Consensus 423 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 79999998764311111 2357888899977665543
No 40
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=22.06 E-value=51 Score=21.97 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=12.9
Q ss_pred cchHHHHHHHHHHHhhc
Q psy8393 13 KGVVIIQKSYALKQMMN 29 (98)
Q Consensus 13 ~~~Lre~Q~~aL~~MLn 29 (98)
+..||+-|.+++.++++
T Consensus 1 ~~~lr~~Q~~ai~~i~~ 17 (184)
T PF04851_consen 1 KYKLRPYQQEAIARIIN 17 (184)
T ss_dssp --EE-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46799999999999997
No 41
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.05 E-value=1.8e+02 Score=21.19 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeeccc-----chhHHhhcCceEEEecccc
Q psy8393 15 VVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVL-----SKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 15 ~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplL-----rV~DLR~~GVTLHl~L~~~ 80 (98)
|-=++|+-+|.+.|-.+.| =++|++|+.+..+=...- .+.++.+.|.|+.+--+..
T Consensus 89 SgGq~qrl~laral~~~~~----------p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 89 SGGELQRVKLASELFSEPP----------GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred CHHHHHHHHHHHHHhhCCC----------CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3345677777777764311 269999998764322111 1345666799987755443
No 42
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=21.59 E-value=1.8e+02 Score=21.63 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEEecCCCce-eecccch----hHHhhcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI-ISPVLSK----NDLRELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI-ISplLrV----~DLR~~GVTLHl~L~~ 79 (98)
+||++|+.+..+ ....-.+ .++++.|.|+.+--++
T Consensus 172 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 699999987654 2222222 2466779998765554
No 43
>PF00239 Resolvase: Resolvase, N terminal domain; InterPro: IPR006119 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA, and a C-terminal helix-turn-helix DNA-binding domain IPR006120 from INTERPRO. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 3PLO_X 3BVP_B 2RSL_C 1ZR2_A 2GM4_B 2GM5_D 1ZR4_A 1GDT_B 1HX7_A 1GHT_A ....
Probab=21.54 E-value=28 Score=23.07 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=25.4
Q ss_pred eEEEEE---ecCCCceeecccchhHHhhcCceEEEecc
Q psy8393 44 WKILIF---DRCGQDIISPVLSKNDLRELGVTLFLYSA 78 (98)
Q Consensus 44 WKVLI~---D~~~qdIISplLrV~DLR~~GVTLHl~L~ 78 (98)
..++|. |.++++.-.-+--+..|+++||++|..=+
T Consensus 60 ~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gv~l~~~~~ 97 (141)
T PF00239_consen 60 GDVIVVYDLDRLGRDPRELLELLEQLRKKGVRLHSVDE 97 (141)
T ss_dssp EEEEEESSHHHCSSSHHHHHHHHHHHHHTTEEEEETTT
T ss_pred cceEEEEecccccccccccccccccccccccceeeccc
Confidence 355554 46777755555567899999999998764
No 44
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.78 E-value=1.5e+02 Score=21.27 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCc-------eeecccchhHHhhcCceEEEeccccc
Q psy8393 17 IIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQD-------IISPVLSKNDLRELGVTLFLYSAEVL 81 (98)
Q Consensus 17 re~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qd-------IISplLrV~DLR~~GVTLHl~L~~~R 81 (98)
=++|+-+|-+.|-.+ -+||++|+.+.. .+.-+++ ++++.|.|+.+--++..
T Consensus 115 G~~qrv~laral~~~------------p~illlDEP~~~LD~~~~~~l~~~l~--~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 115 GERKRVSIALELVSN------------PSLLFLDEPTSGLDSSSALQVMSLLR--RLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHcC------------CCEEEEeCCCcCCCHHHHHHHHHHHH--HHHhCCCEEEEEecCch
Confidence 356666666666532 368999988743 3333333 56667999887777654
No 45
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=20.62 E-value=1.6e+02 Score=23.88 Aligned_cols=13 Identities=15% Similarity=0.894 Sum_probs=11.4
Q ss_pred CCceEEEEEecCC
Q psy8393 41 EPVWKILIFDRCG 53 (98)
Q Consensus 41 e~~WKVLI~D~~~ 53 (98)
.|.||++|++..+
T Consensus 124 ~P~Wrl~vl~~~~ 136 (480)
T PF07247_consen 124 KPLWRLIVLPNED 136 (480)
T ss_pred CCCeEEEEECCCC
Confidence 4999999999984
No 46
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.59 E-value=2.4e+02 Score=23.10 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=32.9
Q ss_pred ceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEE
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl 75 (98)
..+|+|+|-+-. .++.++|.- .-++|.++|....+ ...+|.+.||+++.
T Consensus 9 ~v~viG~G~sG~--------s~~a~~L~~-----------~G~~V~~~D~~~~~------~~~~l~~~gi~~~~ 57 (461)
T PRK00421 9 RIHFVGIGGIGM--------SGLAEVLLN-----------LGYKVSGSDLKESA------VTQRLLELGAIIFI 57 (461)
T ss_pred EEEEEEEchhhH--------HHHHHHHHh-----------CCCeEEEECCCCCh------HHHHHHHCCCEEeC
Confidence 468999996443 335556662 24789999976542 35678888998874
No 47
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.58 E-value=1.6e+02 Score=22.64 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCce-------eecccchhHHhh-cCceEEEecccc
Q psy8393 43 VWKILIFDRCGQDI-------ISPVLSKNDLRE-LGVTLFLYSAEV 80 (98)
Q Consensus 43 ~WKVLI~D~~~qdI-------ISplLrV~DLR~-~GVTLHl~L~~~ 80 (98)
.-+||++|+.+... +-.+ +.++.+ .|.|+.+--++.
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~--L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEM--FYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHH--HHHHHHhcCCEEEEEeCCH
Confidence 45899999987432 1122 346654 499987655543
No 48
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=20.07 E-value=40 Score=23.32 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=22.3
Q ss_pred EecCCCceeecccchhHHhhc-CceEEEe
Q psy8393 49 FDRCGQDIISPVLSKNDLREL-GVTLFLY 76 (98)
Q Consensus 49 ~D~~~qdIISplLrV~DLR~~-GVTLHl~ 76 (98)
+|.++++..--+--+..|++. ||.++..
T Consensus 77 ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 77 MSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred cchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 588899976666667888887 9999983
No 49
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.02 E-value=49 Score=25.00 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=13.2
Q ss_pred CceeEEeecccccchHHH
Q psy8393 1 MNCLIIGLGQTQKGVVII 18 (98)
Q Consensus 1 ~~~~~~~~~~~~~~~Lre 18 (98)
|..+|||+||--...-+.
T Consensus 1 m~iiIiG~G~vG~~va~~ 18 (225)
T COG0569 1 MKIIIIGAGRVGRSVARE 18 (225)
T ss_pred CEEEEECCcHHHHHHHHH
Confidence 678999999876654443
Done!