Query psy8393
Match_columns 98
No_of_seqs 103 out of 192
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:29:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y9j_A SEC1 family domain cont 99.9 5.2E-23 1.8E-27 150.2 4.5 74 13-86 19-92 (159)
2 1mqs_A SLY1 protein, SLY1P; SM 99.7 3.4E-19 1.2E-23 149.5 3.9 82 9-90 12-106 (671)
3 3c98_A Syntaxin-binding protei 99.5 1.3E-15 4.4E-20 125.5 1.8 69 11-86 13-82 (606)
4 3puk_A Syntaxin-binding protei 99.4 6.1E-14 2.1E-18 117.0 2.5 67 13-86 7-74 (592)
5 2xhe_A UNC18; exocytosis, exoc 99.4 2E-13 6.7E-18 114.1 3.6 65 14-86 2-67 (650)
6 1dn1_A NSEC1, syntaxin binding 99.3 1.9E-13 6.4E-18 114.1 2.4 67 13-86 3-70 (594)
7 1epu_A S-SEC1; parallel beta-s 99.3 1.5E-13 5.1E-18 112.7 0.9 65 15-86 2-67 (591)
8 2ygr_A Uvrabc system protein A 44.1 23 0.00078 31.9 4.3 35 45-79 543-582 (993)
9 2r6f_A Excinuclease ABC subuni 38.5 31 0.0011 31.1 4.3 35 45-79 526-565 (972)
10 2ab1_A Hypothetical protein; H 37.5 19 0.00064 24.3 2.2 26 2-27 63-88 (122)
11 3ux8_A Excinuclease ABC, A sub 37.5 52 0.0018 27.0 5.2 36 45-80 566-606 (670)
12 2vf7_A UVRA2, excinuclease ABC 36.9 35 0.0012 29.9 4.3 52 17-78 383-439 (842)
13 3eag_A UDP-N-acetylmuramate:L- 35.8 51 0.0018 24.5 4.6 51 2-76 6-56 (326)
14 3fwz_A Inner membrane protein 35.2 51 0.0017 21.1 4.0 46 2-74 9-54 (140)
15 2vf7_A UVRA2, excinuclease ABC 32.8 49 0.0017 29.0 4.5 35 45-79 753-792 (842)
16 4gp7_A Metallophosphoesterase; 31.5 22 0.00076 23.6 1.8 51 17-79 87-158 (171)
17 2fvt_A Conserved hypothetical 27.1 27 0.00094 24.0 1.6 24 2-26 69-92 (135)
18 2o0a_A S.cerevisiae chromosome 27.0 42 0.0015 26.6 2.9 26 1-30 92-117 (298)
19 3guv_A Site-specific recombina 26.0 17 0.00058 24.4 0.4 35 44-78 76-113 (167)
20 3pih_A Uvrabc system protein A 25.6 93 0.0032 27.5 5.0 56 15-79 807-867 (916)
21 1gdt_A GD resolvase, protein ( 24.6 19 0.00064 24.6 0.4 29 49-77 66-94 (183)
22 2gm2_A Conserved hypothetical 23.6 45 0.0016 22.7 2.2 25 2-27 66-90 (132)
23 3l9w_A Glutathione-regulated p 23.5 62 0.0021 25.4 3.3 47 1-74 5-51 (413)
24 3tif_A Uncharacterized ABC tra 22.8 95 0.0033 22.0 3.9 37 44-80 164-206 (235)
25 3pkz_A Recombinase SIN; small 22.7 12 0.00042 24.2 -0.8 29 49-77 64-92 (124)
26 3g13_A Putative conjugative tr 22.2 12 0.00042 25.1 -0.9 33 46-78 79-113 (169)
27 1g6h_A High-affinity branched- 22.1 92 0.0031 22.4 3.7 36 45-80 173-213 (257)
28 3gfo_A Cobalt import ATP-bindi 21.3 1E+02 0.0035 22.7 4.0 35 45-79 163-203 (275)
29 1ye8_A Protein THEP1, hypothet 21.2 1.4E+02 0.0048 20.2 4.4 50 16-78 79-138 (178)
30 2f00_A UDP-N-acetylmuramate--L 21.0 1.3E+02 0.0044 23.6 4.6 49 2-75 21-69 (491)
31 2gm5_A Transposon gamma-delta 20.8 25 0.00086 23.3 0.4 29 49-77 65-93 (139)
32 2pcj_A ABC transporter, lipopr 20.6 1.1E+02 0.0038 21.4 3.8 36 44-79 159-199 (224)
33 1sgw_A Putative ABC transporte 20.3 1.1E+02 0.0038 21.6 3.8 35 44-79 152-192 (214)
34 3orq_A N5-carboxyaminoimidazol 20.1 75 0.0026 23.9 3.0 12 2-13 14-25 (377)
No 1
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.87 E-value=5.2e-23 Score=150.24 Aligned_cols=74 Identities=46% Similarity=0.712 Sum_probs=67.9
Q ss_pred cchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 13 KGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 13 ~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
+.+||++|+++|.+||++|++.+.+.+.++.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|.
T Consensus 19 ~~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~ 92 (159)
T 1y9j_A 19 AASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRD 92 (159)
T ss_dssp -CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCC
Confidence 36899999999999999998765555668899999999999999999999999999999999999999999873
No 2
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=99.75 E-value=3.4e-19 Score=149.50 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=68.5
Q ss_pred cccccchHHHHHHHHHHHhhcCCCcC--CcCCC---------CCCceEEEEEecCCCceeecccchhHHhhcCceEEEec
Q psy8393 9 GQTQKGVVIIQKSYALKQMMNFNEVQ--SKLSS---------SEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYS 77 (98)
Q Consensus 9 ~~~~~~~Lre~Q~~aL~~MLnlN~~~--~~~~~---------~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L 77 (98)
..+...+||++|+++|.+|||+|++. +.+.+ +++.|||||+|+.+++|||++++++||+++|||+|+.|
T Consensus 12 ~~~~~~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l 91 (671)
T 1mqs_A 12 ASRKDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLI 91 (671)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEET
T ss_pred hccCcccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeec
Confidence 45677899999999999999999862 22222 37899999999999999999999999999999999999
Q ss_pred cccchhhh--HHHHH
Q psy8393 78 AEVLDEEY--SALCL 90 (98)
Q Consensus 78 ~~~Rep~~--~a~~~ 90 (98)
+++|+|+| .|+|+
T Consensus 92 ~~~r~~~~~~~aIYf 106 (671)
T 1mqs_A 92 KQDRSPLPDVPAIYF 106 (671)
T ss_dssp TSCCCCEEEEEEEEE
T ss_pred cCCCCCCCCceEEEE
Confidence 99999986 44543
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=99.53 E-value=1.3e-15 Score=125.51 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred cccchHHHHHHHHH-HHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 11 TQKGVVIIQKSYAL-KQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 11 ~~~~~Lre~Q~~aL-~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
-+..+||+.+++.+ ..|+.-..+ +..|||||+|+.|++||||+++++|||++|||+|+.|+++|+|+|.
T Consensus 13 ~~p~~l~~~~~~~~l~~~i~~v~~-------~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~ 82 (606)
T 3c98_A 13 MAPIGLKAVVGEKIMHDVIKKVKK-------KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS 82 (606)
T ss_dssp ---CCHHHHHHHHHHHHTHHHHCB-------TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTT
T ss_pred cCcHHHHHHHHHHHHHHHHhccCC-------CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCC
Confidence 35678999988665 468874322 2359999999999999999999999999999999999999999985
No 4
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=99.40 E-value=6.1e-14 Score=116.97 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHHH-hhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 13 KGVVIIQKSYALKQ-MMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 13 ~~~Lre~Q~~aL~~-MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
+.+||+..++.|.. ||..-. .++.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|+
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~-------~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~ 74 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCR-------KEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQ 74 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGC-------CTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTT
T ss_pred ChhHHHHHHHHHHHHHHHhhc-------ccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCC
Confidence 68899999988876 888432 14689999999999999999999999999999999999999999884
No 5
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.37 E-value=2e-13 Score=114.12 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=57.9
Q ss_pred chHHHHHHHHHH-HhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 14 GVVIIQKSYALK-QMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 14 ~~Lre~Q~~aL~-~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
.+||+.+++.|. .+|.. .+ ++.|||||+|+.+++|||++++++||+++|||+|+.|+++|+|+|.
T Consensus 2 ~~l~~~~r~~ll~~~l~v-~~-------~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~ 67 (650)
T 2xhe_A 2 MSLKSAVKTVLTNSLRSV-AD-------GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ 67 (650)
T ss_dssp CCHHHHHHHHHHHHHTTC-CC-------CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTT
T ss_pred ccHHHHHHHHHHHHHhcc-cc-------CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCC
Confidence 579999999999 99932 21 2469999999999999999999999999999999999999999864
No 6
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=99.35 E-value=1.9e-13 Score=114.08 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHH-hhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 13 KGVVIIQKSYALKQ-MMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 13 ~~~Lre~Q~~aL~~-MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
..+||+..++.|.. ||..-++ .+.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|+
T Consensus 3 ~~~lk~~~~~~l~~~~l~~~~~-------~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~ 70 (594)
T 1dn1_A 3 PIGLKAVVGEKIMHDVIKKVKK-------KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS 70 (594)
T ss_dssp -CCHHHHHHHHHHHHTTGGGCC-------TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT
T ss_pred chhHHHHHHHHHHHHHHhhccc-------CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCC
Confidence 35788887777755 7874221 3579999999999999999999999999999999999999999986
No 7
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=99.33 E-value=1.5e-13 Score=112.71 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred hHHHHHHHHHH-HhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393 15 VVIIQKSYALK-QMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS 86 (98)
Q Consensus 15 ~Lre~Q~~aL~-~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~ 86 (98)
+||+.+++.+. .|++.-.+ .+.|||||+|+.+++|||++++++||+++|||+|+.|+++|+|+|.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~-------~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~ 67 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKK-------NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPL 67 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCS-------SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEE
T ss_pred ChHHHHHHHHHHHHHHhhcc-------CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCC
Confidence 68888888877 78873222 2469999999999999999999999999999999999999999863
No 8
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=44.14 E-value=23 Score=31.93 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=25.5
Q ss_pred EEEEEecCCCce----eecccch-hHHhhcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI----ISPVLSK-NDLRELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI----ISplLrV-~DLR~~GVTLHl~L~~ 79 (98)
++||+|+.|... ..-++.+ ..|++.|.|+.+-=|+
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 699999999766 3444443 6789999998764443
No 9
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.48 E-value=31 Score=31.06 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=24.9
Q ss_pred EEEEEecCCCce----eecccc-hhHHhhcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI----ISPVLS-KNDLRELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI----ISplLr-V~DLR~~GVTLHl~L~~ 79 (98)
++||+|+.|..+ ..-++. +..|++.|.|+.+-=|.
T Consensus 526 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 526 VLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 799999998765 233333 36789999998765444
No 10
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=37.50 E-value=19 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=19.4
Q ss_pred ceeEEeecccccchHHHHHHHHHHHh
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQM 27 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~M 27 (98)
..||||.|+...+.+-+.-++.+++.
T Consensus 63 evliiGtG~~~~~~~~~~~~~~l~~~ 88 (122)
T 2ab1_A 63 QTLVIGRGMSEALKVPSSTVEYLKKH 88 (122)
T ss_dssp SEEEEEECSSCCSCCCHHHHHHHHHT
T ss_pred CEEEECCCCCCccCCCHHHHHHHHHc
Confidence 36899999999986666666666543
No 11
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=37.47 E-value=52 Score=26.98 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=24.9
Q ss_pred EEEEEecCCCce----eeccc-chhHHhhcCceEEEecccc
Q psy8393 45 KILIFDRCGQDI----ISPVL-SKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 45 KVLI~D~~~qdI----ISplL-rV~DLR~~GVTLHl~L~~~ 80 (98)
|||++|+.+..+ ..-++ -+.+|++.|.|+.+--|..
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899999998765 11112 1457788899998766654
No 12
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=36.90 E-value=35 Score=29.91 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCce----eecccc-hhHHhhcCceEEEecc
Q psy8393 17 IIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDI----ISPVLS-KNDLRELGVTLFLYSA 78 (98)
Q Consensus 17 re~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdI----ISplLr-V~DLR~~GVTLHl~L~ 78 (98)
=|+|+-+|-+.|..+ +.=++||+|+.+... +.-++. +..|++.|.|+.+-=|
T Consensus 383 Ge~QRV~LA~aL~~~----------p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeH 439 (842)
T 2vf7_A 383 GELQRLRLATQLYSN----------LFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439 (842)
T ss_dssp HHHHHHHHHHHTTTC----------CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHHhhC----------CCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 355555555555532 111699999998765 223333 4678999999876433
No 13
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=35.83 E-value=51 Score=24.48 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=34.6
Q ss_pred ceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEe
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLY 76 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~ 76 (98)
+..+||+|-+--+ ++.++|.- .-++|-++|.... .| ....|++.||+++.-
T Consensus 6 ~i~~iGiGg~Gms--------~~A~~L~~-----------~G~~V~~~D~~~~---~~--~~~~L~~~gi~v~~g 56 (326)
T 3eag_A 6 HIHIIGIGGTFMG--------GLAAIAKE-----------AGFEVSGCDAKMY---PP--MSTQLEALGIDVYEG 56 (326)
T ss_dssp EEEEESCCSHHHH--------HHHHHHHH-----------TTCEEEEEESSCC---TT--HHHHHHHTTCEEEES
T ss_pred EEEEEEECHHHHH--------HHHHHHHh-----------CCCEEEEEcCCCC---cH--HHHHHHhCCCEEECC
Confidence 5688999966533 34455541 2389999998654 12 246799999999864
No 14
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=35.19 E-value=51 Score=21.06 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=28.3
Q ss_pred ceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEE
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLF 74 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLH 74 (98)
..+|+|+|..-.. +.+.|.- .-|.|.++|..-. ++.++++.|+...
T Consensus 9 ~viIiG~G~~G~~---------la~~L~~-----------~g~~v~vid~~~~-------~~~~~~~~g~~~i 54 (140)
T 3fwz_A 9 HALLVGYGRVGSL---------LGEKLLA-----------SDIPLVVIETSRT-------RVDELRERGVRAV 54 (140)
T ss_dssp CEEEECCSHHHHH---------HHHHHHH-----------TTCCEEEEESCHH-------HHHHHHHTTCEEE
T ss_pred CEEEECcCHHHHH---------HHHHHHH-----------CCCCEEEEECCHH-------HHHHHHHcCCCEE
Confidence 5789999965443 3333431 1377889987543 4566777777643
No 15
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=32.76 E-value=49 Score=29.01 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=25.2
Q ss_pred EEEEEecCCCce----eecccc-hhHHhhcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI----ISPVLS-KNDLRELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI----ISplLr-V~DLR~~GVTLHl~L~~ 79 (98)
+|||+|+.+..+ ..-++. +.+|.+.|.|+.+-=|.
T Consensus 753 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 899999999876 333333 45788889998765444
No 16
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.50 E-value=22 Score=23.61 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeec--------------------cc-chhHHhhcCceEEE
Q psy8393 17 IIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISP--------------------VL-SKNDLRELGVTLFL 75 (98)
Q Consensus 17 re~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISp--------------------lL-rV~DLR~~GVTLHl 75 (98)
-++|+-+|-+-|.. ..++|++|+.+...-.- +. -+.+|++.|.|+.+
T Consensus 87 g~~qrv~iAral~~------------~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~ 154 (171)
T 4gp7_A 87 ARKPLIEMAKDYHC------------FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVY 154 (171)
T ss_dssp HHHHHHHHHHHTTC------------EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEE
T ss_pred HHHHHHHHHHHcCC------------cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEE
Confidence 34666666666552 47899999987543322 01 13556677999887
Q ss_pred eccc
Q psy8393 76 YSAE 79 (98)
Q Consensus 76 ~L~~ 79 (98)
-.|.
T Consensus 155 vtH~ 158 (171)
T 4gp7_A 155 ILNS 158 (171)
T ss_dssp EECS
T ss_pred EeCC
Confidence 6665
No 17
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=27.09 E-value=27 Score=23.97 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=17.0
Q ss_pred ceeEEeecccccchHHHHHHHHHHH
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQ 26 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~ 26 (98)
..||||.|+.+.+ +-..-++.|++
T Consensus 69 evliiGTG~~~~~-l~p~l~~~l~~ 92 (135)
T 2fvt_A 69 DTLIVGTGADVWI-APRQLREALRG 92 (135)
T ss_dssp SEEEEECTTSCCC-CCHHHHHHHHT
T ss_pred CEEEEcCCCCCCc-CCHHHHHHHHH
Confidence 3689999999987 55555555543
No 18
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=27.03 E-value=42 Score=26.58 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.7
Q ss_pred CceeEEeecccccchHHHHHHHHHHHhhcC
Q psy8393 1 MNCLIIGLGQTQKGVVIIQKSYALKQMMNF 30 (98)
Q Consensus 1 ~~~~~~~~~~~~~~~Lre~Q~~aL~~MLnl 30 (98)
.||=||-+|||-++.+ ..++.+.++.
T Consensus 92 yNvcIfSyGQTGsGKT----~ral~q~f~~ 117 (298)
T 2o0a_A 92 KNFNLISLSTTPHGSL----RESLIKFLAE 117 (298)
T ss_dssp CCEEEEEECSSCCHHH----HHHHHHHHHS
T ss_pred CceEEEEECCCCCCcc----HHHHHHHHHH
Confidence 3899999999999999 6677777774
No 19
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=25.99 E-value=17 Score=24.39 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=26.2
Q ss_pred eEEEE---EecCCCceeecccchhHHhhcCceEEEecc
Q psy8393 44 WKILI---FDRCGQDIISPVLSKNDLRELGVTLFLYSA 78 (98)
Q Consensus 44 WKVLI---~D~~~qdIISplLrV~DLR~~GVTLHl~L~ 78 (98)
+.+|| +|..+++..--+--+..|+++||+++..=+
T Consensus 76 ~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~~~~ 113 (167)
T 3guv_A 76 VSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLICVED 113 (167)
T ss_dssp CSEEEESCGGGTCSSHHHHHHHHHHHHHTTCEEEETTT
T ss_pred ccEEEEEeCchhcCCHHHHHHHHHHHHHCCCEEEEeeC
Confidence 55555 377888876666677889999999997543
No 20
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=25.61 E-value=93 Score=27.54 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCce----eecccc-hhHHhhcCceEEEeccc
Q psy8393 15 VVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDI----ISPVLS-KNDLRELGVTLFLYSAE 79 (98)
Q Consensus 15 ~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdI----ISplLr-V~DLR~~GVTLHl~L~~ 79 (98)
|==|+|+-+|-+.|--++ ..=++||+|+.+..+ ..-++. +.+|++.|.|+.+--|.
T Consensus 807 SGGErQRV~LAraL~~~p---------~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 807 SGGEAQRIKLASELRKRD---------TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp CHHHHHHHHHHHHHTSCC---------CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CHHHHHHHHHHHHHhhCC---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 334566666666654321 123899999999765 112222 35677889998765443
No 21
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=24.60 E-value=19 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=23.9
Q ss_pred EecCCCceeecccchhHHhhcCceEEEec
Q psy8393 49 FDRCGQDIISPVLSKNDLRELGVTLFLYS 77 (98)
Q Consensus 49 ~D~~~qdIISplLrV~DLR~~GVTLHl~L 77 (98)
+|.++++..--+--+..|.++||+++..=
T Consensus 66 ldRl~R~~~~~~~~~~~l~~~gv~l~~~~ 94 (183)
T 1gdt_A 66 LDRLGRDTADMIQLIKEFDAQGVSIRFID 94 (183)
T ss_dssp GGGTCSSHHHHHHHHHHHHHTTCEEEEGG
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEec
Confidence 47889987777777889999999999753
No 22
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=23.64 E-value=45 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=17.0
Q ss_pred ceeEEeecccccchHHHHHHHHHHHh
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQM 27 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~M 27 (98)
..||||.|+.+.+ +-..-++.|++.
T Consensus 66 evliiGTG~~~~~-l~p~~~~~l~~~ 90 (132)
T 2gm2_A 66 AVILLGTGERQQF-PSTDVLAACLTR 90 (132)
T ss_dssp SEEEEECTTSCCC-CCHHHHHHHHHH
T ss_pred CEEEECCCCCCCc-CCHHHHHHHHHc
Confidence 3689999999984 444455555543
No 23
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.54 E-value=62 Score=25.37 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=28.2
Q ss_pred CceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEE
Q psy8393 1 MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLF 74 (98)
Q Consensus 1 ~~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLH 74 (98)
|..+|+|+|..-. .+.++|.- .-+.|.|+|..-. ++..+++.|+..+
T Consensus 5 ~~viIiG~Gr~G~---------~va~~L~~-----------~g~~vvvId~d~~-------~v~~~~~~g~~vi 51 (413)
T 3l9w_A 5 MRVIIAGFGRFGQ---------ITGRLLLS-----------SGVKMVVLDHDPD-------HIETLRKFGMKVF 51 (413)
T ss_dssp CSEEEECCSHHHH---------HHHHHHHH-----------TTCCEEEEECCHH-------HHHHHHHTTCCCE
T ss_pred CeEEEECCCHHHH---------HHHHHHHH-----------CCCCEEEEECCHH-------HHHHHHhCCCeEE
Confidence 4689999996443 34445541 1256888886533 3455666666543
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=22.80 E-value=95 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=23.4
Q ss_pred eEEEEEecCCCcee--ec--cc-chhHHhh-cCceEEEecccc
Q psy8393 44 WKILIFDRCGQDII--SP--VL-SKNDLRE-LGVTLFLYSAEV 80 (98)
Q Consensus 44 WKVLI~D~~~qdII--Sp--lL-rV~DLR~-~GVTLHl~L~~~ 80 (98)
=+||++|+.+..+= +- ++ -+.++++ .|.|+.+--|..
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 36999999987531 11 01 1356654 499998877764
No 25
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=22.72 E-value=12 Score=24.23 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.0
Q ss_pred EecCCCceeecccchhHHhhcCceEEEec
Q psy8393 49 FDRCGQDIISPVLSKNDLRELGVTLFLYS 77 (98)
Q Consensus 49 ~D~~~qdIISplLrV~DLR~~GVTLHl~L 77 (98)
+|..+++..--+--+..|+++||+++..=
T Consensus 64 ldRl~R~~~~~~~~~~~l~~~gv~l~~~~ 92 (124)
T 3pkz_A 64 IDRLGRNYNEVIHTVNYLKDKEVQLMITS 92 (124)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEec
Confidence 47888888777777889999999999753
No 26
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=22.22 E-value=12 Score=25.08 Aligned_cols=33 Identities=9% Similarity=0.296 Sum_probs=26.6
Q ss_pred EEE--EecCCCceeecccchhHHhhcCceEEEecc
Q psy8393 46 ILI--FDRCGQDIISPVLSKNDLRELGVTLFLYSA 78 (98)
Q Consensus 46 VLI--~D~~~qdIISplLrV~DLR~~GVTLHl~L~ 78 (98)
|+| +|..+++..--+--+..|+++||+++..-+
T Consensus 79 vvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~~~~ 113 (169)
T 3g13_A 79 VFTKSISRFARNTLDTLKYVRMLKERNIAVYFEDE 113 (169)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTTCEEEETTT
T ss_pred EEEEeccccccChHHHHHHHHHHHHcCCEEEEecC
Confidence 444 488999888877888899999999998543
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.08 E-value=92 Score=22.36 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=22.1
Q ss_pred EEEEEecCCCceeec----cc-chhHHhhcCceEEEecccc
Q psy8393 45 KILIFDRCGQDIISP----VL-SKNDLRELGVTLFLYSAEV 80 (98)
Q Consensus 45 KVLI~D~~~qdIISp----lL-rV~DLR~~GVTLHl~L~~~ 80 (98)
+||++|+.+..+=.. ++ -+.++.+.|.|+.+--|..
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 213 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 699999988653111 00 1245666699987765553
No 28
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=21.28 E-value=1e+02 Score=22.71 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=22.0
Q ss_pred EEEEEecCCCce--eec--cc-chhHHh-hcCceEEEeccc
Q psy8393 45 KILIFDRCGQDI--ISP--VL-SKNDLR-ELGVTLFLYSAE 79 (98)
Q Consensus 45 KVLI~D~~~qdI--ISp--lL-rV~DLR-~~GVTLHl~L~~ 79 (98)
+||++|+.+..+ .+- ++ -+.+|+ +.|.|+.+--+.
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 699999988753 111 11 145665 569998775554
No 29
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=21.20 E-value=1.4e+02 Score=20.17 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHh-----hcCCCcCCcCCCCCCceEEEEEec--CCCceeecccc--h-hHHhhcCceEEEecc
Q psy8393 16 VIIQKSYALKQM-----MNFNEVQSKLSSSEPVWKILIFDR--CGQDIISPVLS--K-NDLRELGVTLFLYSA 78 (98)
Q Consensus 16 Lre~Q~~aL~~M-----LnlN~~~~~~~~~e~~WKVLI~D~--~~qdIISplLr--V-~DLR~~GVTLHl~L~ 78 (98)
-=++|+-+|.+. |..+ -++||+|+ .+.. +.|..+ + .-|++.|.|+.+-.|
T Consensus 79 gG~~qr~~la~aa~~~~l~~~------------p~llilDEigp~~~-ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 79 YFEELAIPILERAYREAKKDR------------RKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT------------TCEEEECCCSTTGG-GCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHHHHHHHHHhhccccccccC------------CCEEEEeCCCCccc-CCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 346777777774 5422 26999999 3332 233221 1 223445776766665
No 30
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=20.96 E-value=1.3e+02 Score=23.63 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=32.6
Q ss_pred ceeEEeecccccchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEE
Q psy8393 2 NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75 (98)
Q Consensus 2 ~~~~~~~~~~~~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl 75 (98)
+.+|||+|-+-.+. +.++|.- .-++|.+.|.... |. ...|++.||+++.
T Consensus 21 ~v~viGiG~sG~s~--------~A~~l~~-----------~G~~V~~~D~~~~----~~--~~~l~~~gi~~~~ 69 (491)
T 2f00_A 21 HIHFVGIGGAGMGG--------IAEVLAN-----------EGYQISGSDLAPN----PV--TQQLMNLGATIYF 69 (491)
T ss_dssp EEEEETTTSTTHHH--------HHHHHHH-----------TTCEEEEECSSCC----HH--HHHHHHTTCEEES
T ss_pred EEEEEEcCHHHHHH--------HHHHHHh-----------CCCeEEEECCCCC----HH--HHHHHHCCCEEEC
Confidence 46899999766543 3344441 1378999998663 32 3578889998864
No 31
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=20.77 E-value=25 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.4
Q ss_pred EecCCCceeecccchhHHhhcCceEEEec
Q psy8393 49 FDRCGQDIISPVLSKNDLRELGVTLFLYS 77 (98)
Q Consensus 49 ~D~~~qdIISplLrV~DLR~~GVTLHl~L 77 (98)
+|..+++..--+--+..|.+.||+++..=
T Consensus 65 ldRL~R~~~d~~~~~~~l~~~gv~l~~~~ 93 (139)
T 2gm5_A 65 LDHLGRDTADMIQLIKEFDAQGVSIRFID 93 (139)
T ss_dssp GGGTSSSHHHHHHHHHHHHHTTCEEEETT
T ss_pred cccccCCHHHHHHHHHHHHhCCCEEEEec
Confidence 37888887776666789999999998753
No 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.59 E-value=1.1e+02 Score=21.44 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=23.1
Q ss_pred eEEEEEecCCCce--eecc--c-chhHHhhcCceEEEeccc
Q psy8393 44 WKILIFDRCGQDI--ISPV--L-SKNDLRELGVTLFLYSAE 79 (98)
Q Consensus 44 WKVLI~D~~~qdI--ISpl--L-rV~DLR~~GVTLHl~L~~ 79 (98)
=++|++|+.+..+ .+-- + -+.++++.|.|+.+--|.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3699999998643 2111 1 135666669998887665
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.27 E-value=1.1e+02 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=21.7
Q ss_pred eEEEEEecCCCceeeccc------chhHHhhcCceEEEeccc
Q psy8393 44 WKILIFDRCGQDIISPVL------SKNDLRELGVTLFLYSAE 79 (98)
Q Consensus 44 WKVLI~D~~~qdIISplL------rV~DLR~~GVTLHl~L~~ 79 (98)
-+||++|+.+..+ -|.- -+.++++.|.|+.+--+.
T Consensus 152 p~lllLDEPts~L-D~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 152 AEIYVLDDPVVAI-DEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp CSEEEEESTTTTS-CTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred CCEEEEECCCcCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4799999987653 1111 134566668888765554
No 34
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=20.13 E-value=75 Score=23.89 Aligned_cols=12 Identities=50% Similarity=0.429 Sum_probs=9.4
Q ss_pred ceeEEeeccccc
Q psy8393 2 NCLIIGLGQTQK 13 (98)
Q Consensus 2 ~~~~~~~~~~~~ 13 (98)
..+|+|.||...
T Consensus 14 ~IlIlG~G~lg~ 25 (377)
T 3orq_A 14 TIGIIGGGQLGK 25 (377)
T ss_dssp EEEEECCSHHHH
T ss_pred EEEEECCCHHHH
Confidence 479999998643
Done!