RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8393
         (98 letters)



>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 61.7 bits (149), Expect = 2e-13
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 23 ALKQMMNFNEVQSK-----------LSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGV 71
          A+ +M+  N+  +             +  E +WK+LI D      IS VL  NDL + G+
Sbjct: 12 AILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGI 71

Query: 72 TLFL 75
          T+  
Sbjct: 72 TVHS 75


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
          (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 41 EPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             WK+LI D+    ++S     +++   G+TL  
Sbjct: 21 NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVE 55


>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 589

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 23 ALKQMMN---FNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
           LK ++     ++V  K+   +  WK+L+ D+    ++S      D+   G+T+  
Sbjct: 2  GLKAVVGEKIMHDVIKKVKK-KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVE 56


>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3,
          N-terminal domain {Bacillus stearothermophilus [TaxId:
          1422]}
          Length = 76

 Score = 24.3 bits (53), Expect = 1.5
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 5  IIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDR 51
          +I     Q G+   Q++  +    N + V    ++  PV +I+ + +
Sbjct: 16 LIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGK 62


>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 197

 Score = 24.5 bits (53), Expect = 2.4
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 1   MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKI--------LIFDRC 52
           ++ L++      +          L++    +E+     +  P+ KI        LI  R 
Sbjct: 97  IDTLVVVPKHVTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIALICARL 156

Query: 53  GQDIISPVLS---KNDLREL 69
            Q  +   L+   KN LR L
Sbjct: 157 DQPQVPLSLTLSDKNLLRNL 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,992
Number of extensions: 12771
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)