BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8397
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++LD +GL H LSGGQ +R++IA L P IM DEPT+ LD + +++
Sbjct: 121 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 180
Query: 97 LKALARGGRTIVCTIHQ 113
+K LA G T+V H+
Sbjct: 181 MKQLANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++LD +GL H LSGGQ +R++IA L P IM DEPT+ LD + +++
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 97 LKALARGGRTIVCTIHQ 113
+K LA G T+V H+
Sbjct: 202 MKQLANEGMTMVVVTHE 218
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
+LSGGQ++R++IA L +NPPI+ DEPT LDS + + +LK L G+T+V H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
+ F
Sbjct: 205 DINVARF 211
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
+LSGGQ++R++IA L +NPPI+ D+PT LDS + + + +LK L G+T+V H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
+ F
Sbjct: 205 DINVARF 211
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
+LSGGQ++R++IA L +NPPI+ D+PT LDS + + + +LK L G+T+V H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
+ F
Sbjct: 205 DINVARF 211
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S A L AR GRT + H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 113 QPS 115
+ S
Sbjct: 584 RLS 586
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGGQK+R++IA L+ P I+ LDE T+ LD+ S L AR GRT + H+
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
Query: 114 PS 115
S
Sbjct: 1230 LS 1231
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S A L AR GRT + H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 113 QPS 115
+ S
Sbjct: 584 RLS 586
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGGQK+R++IA L+ P I+ LDE T+ LD+ S L AR GRT + H+
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
Query: 114 PS 115
S
Sbjct: 1230 LS 1231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSGGQ++R+++A L+ +P ++ LDEP + LD+ + A++K + +R G T++ H
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 114 PSATIFEMVDHLGL 127
P A IF + D +G+
Sbjct: 201 P-ADIFAIADRVGV 213
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQ++R+SIA L P ++ DEPT+ LD + + +++ LA G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGGQK+RLSIA ++NPPI+ LDE T+ LD S + L L++ RT + H+
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 535
Query: 114 PS 115
S
Sbjct: 536 LS 537
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S L AR GRT + H+
Sbjct: 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
Query: 114 PSATIFEMVDHLGLDSNST 132
+ + D + + SN T
Sbjct: 1276 LNTVM--NADCIAVVSNGT 1292
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S L A+G TI+
Sbjct: 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSG Q++R+++A L+ +P ++ LDEP + LD+ + A++K + +R G T++ H
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 114 PSATIFEMVDHLGL 127
P A IF + D +G+
Sbjct: 201 P-ADIFAIADRVGV 213
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
++SGGQ++RL+IA + NP I+ LDE T LDS S + L +L + GRT + H+
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
Query: 114 PSATI 118
S +
Sbjct: 198 LSTIV 202
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGG+++R++IA L + P ++F DEPT LDS +T + + + + GG +IV H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ DE T+ LD +T +
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 95 AMLKALARG-GRTIVCTIHQ 113
+LK + R G TI+ H+
Sbjct: 181 ELLKDINRRLGLTILLITHE 200
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ D+ T+ LD +T +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 95 AMLKALARG-GRTIVCTIHQ 113
+LK + R G TI+ H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ D+ T+ LD +T +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 95 AMLKALARG-GRTIVCTIHQ 113
+LK + R G TI+ H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++ H+
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 115 S 115
S
Sbjct: 201 S 201
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++ H+
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 115 S 115
S
Sbjct: 201 S 201
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
+D I +D+ LDT V+ ++ + LSGGQ++R++IA L+ + PI+ LDE T+ LD+
Sbjct: 460 MDFINKMDNGLDT---VIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 89 STNQCVAMLKALARGGRTIVCTIHQPS 115
S A L L + RT + H+ S
Sbjct: 515 SERAIQAALDELQK-NRTSLVIAHRLS 540
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
+D I +D+ LDTI + ++ + LSGGQ++R++IA L+ + PI+ LDE T+ LD+
Sbjct: 460 MDFINKMDNGLDTI---IGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 89 STNQCVAMLKALARGGRTIVCTIHQPS 115
S A L L + RT + H+ S
Sbjct: 515 SERAIQAALDELQK-NRTSLVIAHRLS 540
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++ H+
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 198
Query: 115 S 115
S
Sbjct: 199 S 199
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++ H+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 115 S 115
S
Sbjct: 205 S 205
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 30 DTIGLVDDILDTIGLVLS--KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
D + LV ++ +GL K + LSGG+K+R++IA ++ P I+ LDEP GLD
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 88 NSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
+ +++ G+T++ H I
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVI 202
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 30 DTIGLVDDILDTIGLVLS--KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
D + LV ++ +GL K + LSGG+K+R++IA ++ P I+ LDEP GLD
Sbjct: 114 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 88 NSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
+ +++ G+T++ H I
Sbjct: 174 EGKTDLLRIVEKWKTLGKTVILISHDIETVI 204
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 15 ISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74
++A+ R++ ++ + + + + V+ + + LSGGQK+R++IA L+ NP
Sbjct: 448 VTAEEIQRVA--EVANAVAFIRNFPQGFNTVVGEKGVL--LSGGQKQRIAIARALLKNPK 503
Query: 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
I+ LDE T+ LD+ + L L GRT++ H+ S
Sbjct: 504 ILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLS 543
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQK+R++IA L+ NP I+ LDE T+ LD+ + L L GRT++ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHHL 573
Query: 115 S 115
S
Sbjct: 574 S 574
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L+ + P++ LDE T+ LD+ S A L L + +T++ H+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRL 539
Query: 115 S 115
S
Sbjct: 540 S 540
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L++NP I+ D+ T+ LD S + + + + + GRT++ H+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 115 S 115
S
Sbjct: 205 S 205
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 35 VDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
VD+ L G+ + K T C LS GQKKR++IA L+ P ++ LDEPT GLD ++
Sbjct: 124 VDNALKRTGIEHLKDKPTHC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181
Query: 93 CVAMLKALARG-GRTIVCTIH 112
+ +L + + G TI+ H
Sbjct: 182 IMKLLVEMQKELGITIIIATH 202
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 13 QIISAQYSHRISVDDILDTIGL--------VDDILDTIGLVLSKHTLCGRLSGGQKKRLS 64
QII A ++ L+ +GL + +L+ +GL LSGGQK+RL+
Sbjct: 93 QIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLA 150
Query: 65 IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
IA L + + LDEP + LD S + +L++L G+ I+ H+
Sbjct: 151 IASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+++R+++A L+ NP I+ LDEP + LD + ML L + + V I
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 115 SATIFEMVDHLGL 127
M D + +
Sbjct: 188 QTEARIMADRIAV 200
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVII 193
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + + GRT++
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVII 199
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 53 GR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
GR SGGQK+RLSIA L+ P ++ LD+ T+ +D + + + LK +G T + T
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 112 HQPSATI 118
P+A +
Sbjct: 537 KIPTALL 543
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
+LSGGQ++R++IA L+ P ++ LDEP + LD+ + A LK L + G T V H
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 113 QPSATIFEMVDHLGL 127
A M D + +
Sbjct: 193 D-QAEALAMADRIAV 206
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
S G ++L IA L+ NP + LDEPT+GLD + + +LK ++ G TI+ + H
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 116 ATIFEMVDHLGLDSNST 132
F + D + L N T
Sbjct: 208 EVEF-LCDRIALIHNGT 223
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Query: 20 SHRISVDDILDTIG------LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73
+ RIS D++ + L+D++LD K T +LSGGQ++R+++A L+ P
Sbjct: 102 ARRISKDEVEKRVVEIARKLLIDNLLD------RKPT---QLSGGQQQRVALARALVKQP 152
Query: 74 PIMFLDEPTTGLDSN 88
++ DEP + LD+N
Sbjct: 153 KVLLFDEPLSNLDAN 167
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++ + +GL + LSGGQ++R+++ ++ P + +DEP + LD+ +
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 95 AMLKALAR--GGRTIVCTIHQPSA 116
A LK L R G TI T Q A
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEA 203
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGG+++R++IA L+ +P I+ DE T+ LDS + ++ L R RT++ H+
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHR 213
Query: 114 PS 115
S
Sbjct: 214 LS 215
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGG+K+R++IA ++ P I+ LDE T+ LD+++ A L + RT + H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHR 248
Query: 114 PSATI 118
S +
Sbjct: 249 LSTVV 253
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++ + +GL + LSGGQ++R+++ +I P + DEP + LD+ +
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXR 182
Query: 95 AMLKALAR--GGRTIVCTIHQPSA 116
A LK L R G TI T Q A
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQVEA 206
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 39 LDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
LD + L L+K LSGGQ++ + IA + ++ LDEPT+ LD + + +++L
Sbjct: 113 LDYLNLTHLAKREFTS-LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 98 KALARG-GRTIVCTIHQPSATI 118
LA+ T+V T HQP+ +
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQVV 193
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
LSGGQ++R++I L+ P + LDEP + LD+ Q + L R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
LSGGQ++R++I L+ P + LDEP + LD+ Q + L R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
D G +++++ + L LSGG+ +R++IA L+ N F DEP++ LD
Sbjct: 134 DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 90 TNQCVAMLKALARGGRTIVCTIH 112
++ L+ G++++ H
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEH 216
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +G++ LSGG+ +R++IA L+ + I LDEP+ LD Q +A+
Sbjct: 384 ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD---VEQRLAV 440
Query: 97 LKAL 100
+A+
Sbjct: 441 SRAI 444
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 14 IISAQYSHRISVDDILDTI-GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
+IS + DI D I +L +G G LS G+K+R+ IA L
Sbjct: 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQ 179
Query: 73 PPIMFLDEPTTGLD 86
P ++ LDEP GLD
Sbjct: 180 PQVLILDEPAAGLD 193
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 22 RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
R+ + +I D +G + ++ LD + L S G LSGG+ +R+ +A ++ + L
Sbjct: 173 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 228
Query: 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
DEP+ GL ++ +A LK++ G T++ H
Sbjct: 229 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALEL---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + + LDEPTTGL + + + +L L G T++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 112 H 112
H
Sbjct: 604 H 604
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 22 RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
R+ + +I D +G + ++ LD + L S G LSGG+ +R+ +A ++ + L
Sbjct: 475 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 530
Query: 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
DEP+ GL ++ +A LK++ G T++ H
Sbjct: 531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALEL---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + + LDEPTTGL + + + +L L G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 112 H 112
H
Sbjct: 906 H 906
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
+LSGGQ++ +++A LI P ++ LD+ T+ LD+NS Q +L ++ R R+++
Sbjct: 154 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 213
Query: 113 QPSATIFEMVDHL 125
S + E DH+
Sbjct: 214 HLS--LVEQADHI 224
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
LSGGQ++R++I L+ P + LD+P + LD+ Q + L R GRT++ H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 45 VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
VL+ + L +LSGG K+R+ IAL L+ +P ++ LDEPT+ LD
Sbjct: 147 VLNSYPL--QLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 22 RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
R+ + +I D +G + ++ LD + L S G LSGG+ +R+ +A ++ + L
Sbjct: 475 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 530
Query: 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
DEP+ GL ++ +A LK+ G T++ H
Sbjct: 531 DEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALEL---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + + LDEPTTGL + + + +L L G T++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 112 H 112
H
Sbjct: 906 H 906
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
+LSGGQ++ +++A LI P ++ LD+ T+ LD+ + + +L ++ RT++ H
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Query: 113 QPSATIFEMVDH-LGLDSNSTNQCVAMLKALARGG--RTIV 150
Q S + E H L L S + L+ + RGG R++V
Sbjct: 216 QLS--LAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGG+ +R++IA L+ F DEP++ LD + +++ LA G+ ++ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +G++ LSGG+ +R++IA L+ + I LDEP+ LD Q +A+
Sbjct: 454 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD---VEQRLAV 510
Query: 97 LKAL 100
+A+
Sbjct: 511 SRAI 514
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGG+ +R++IA L+ F DEP++ LD + +++ LA G+ ++ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +G++ LSGG+ +R++IA L+ + I LDEP+ LD Q +A+
Sbjct: 440 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD---VEQRLAV 496
Query: 97 LKAL 100
+A+
Sbjct: 497 SRAI 500
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQ++R+++A ++ P ++ +DEP + LD+ A +K L + + V TI+
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--KLKVTTIY 198
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQ++R+++A ++ P ++ +DEP + LD+ A +K L + + V TI+
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--KLKVTTIY 197
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.9 bits (89), Expect = 0.002, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTN 91
LVD L+ + L S TL SGG+ +R+ +A ++ I LDEPT GL T
Sbjct: 448 LVDVGLEYLTLSRSATTL----SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTE 503
Query: 92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
+ + LK L G T++ H + DH+
Sbjct: 504 RLIKTLKKLRDLGNTVIVVEHDEE--VIRNADHI 535
Score = 36.6 bits (83), Expect = 0.009, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 55 LSGGQKKRLSIALELIDNPP---IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + LDEPT GL + V +L L G T++
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 112 HQPSATIFEMVDHL 125
H + + + DH+
Sbjct: 866 H--NLDVIKNADHI 877
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
RLSGG+++R+++A L+ P ++ LDEP + +D + + L+ + R
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
G LSGGQ K + I L+ NP ++ +DEP G+ + + L G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159
H+ + +DHL + N Q +A RG I + P
Sbjct: 211 HRLD-IVLNYIDHLYVMFNG--QIIAE----GRGEEEIKNVLSDPKVV 251
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
G LSGGQ K + I L+ NP ++ +DEP G+ + + L G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159
H+ + +DHL + N Q +A RG I + P
Sbjct: 211 HRLD-IVLNYIDHLYVMFNG--QIIAE----GRGEEEIKNVLSDPKVV 251
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 55 LSGGQKKRLSIALELID------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG+++R+ +A L P +FLDEPT+ LD + +L+ L R V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 109 CTI 111
C +
Sbjct: 202 CCV 204
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
LS GQ++ L+I + NP I+ LDE T+ +D+ + A + L G +I+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 55 LSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LS G+ +RL +A +L N + LDEP+ GL T ++ L+ L RGG ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 55 LSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + + LDEPTTGL + L L G T++
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 112 HQ 113
H+
Sbjct: 791 HK 792
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALELIDNPP---IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + LDEPTTGL + + + ++ L G T++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 112 H 112
H
Sbjct: 924 H 924
Score = 30.0 bits (66), Expect = 0.83, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 46 LSKHTLCGRLSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
LS LSGG+ +R+ +A ++ + LDEP+ GL + + L L
Sbjct: 513 LSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL 572
Query: 104 GRTIVCTIH 112
G T++ H
Sbjct: 573 GNTLIVVEH 581
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
H+ LSGGQK +L +A P ++ LDEPT LD +S LK GG I+
Sbjct: 890 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIII 948
Score = 36.6 bits (83), Expect = 0.010, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LSGG K +L++A ++ N I+ LDEPT LD+
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
H+ LSGGQK +L +A P ++ LDEPT LD +S LK GG I+
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIII 954
Score = 36.6 bits (83), Expect = 0.010, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LSGG K +L++A ++ N I+ LDEPT LD+
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
G LSGGQ K + I L+ NP ++ +D+P G+ + + L G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159
H+ + +DHL + N Q +A RG I + P
Sbjct: 211 HRLD-IVLNYIDHLYVMFNG--QIIAE----GRGEEEIKNVLSDPKVV 251
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
L G LSGG+++ L+I L P ++ DEP+ GL ++ +++ + + G TI+
Sbjct: 136 LGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
H+ LSGGQK +L +A P ++ LDEPT LD +S LK GG I+
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIII 954
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 24 SVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
++ D L G D++ I + +S LSGG K +L++A ++ N I+ LDEPT
Sbjct: 527 AIKDKLIEFGFTDEM---IAMPISA------LSGGWKMKLALARAVLRNADILLLDEPTN 577
Query: 84 GLDS 87
LD+
Sbjct: 578 HLDT 581
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L + L + LSGGQ++R+++A L P ++ DEP +D+ +
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 95 AMLKAL 100
++ +
Sbjct: 186 TFVRQV 191
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
+LSGGQ++ +++A LI P ++ LD T+ LD+ + + +L ++ RT++
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Query: 113 QPSATIFEMVDH-LGLDSNSTNQCVAMLKALARGG--RTIV 150
Q S + E H L L S + L+ + RGG R++V
Sbjct: 216 QLS--LAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 27 DILDTIGLVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEP 81
+ LD D + + I L+ L R SGG+KKR I + P + LDE
Sbjct: 113 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 82 TTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+GLD ++ + +L G R+ + H
Sbjct: 173 DSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 27 DILDTIGLVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEP 81
+ LD D + + I L+ L R SGG+KKR I + P + LDE
Sbjct: 132 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191
Query: 82 TTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+GLD ++ + +L G R+ + H
Sbjct: 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGG+ +R +I + + + DEP++ LD ++++L + ++C H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
LSGG+ +R++I L L I +DEP+ LDS C +++
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 15 ISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74
+ A+ + V + + ++LD LS++ G SGG+KKR I L+ P
Sbjct: 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG-FSGGEKKRNEILQLLVLEPT 163
Query: 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG 103
LDE +GLD ++ LK +ARG
Sbjct: 164 YAVLDETDSGLDIDA-------LKVVARG 185
>pdb|2LKP|A Chain A, Solution Structure Of Apo-Nmtr
pdb|2LKP|B Chain B, Solution Structure Of Apo-Nmtr
Length = 119
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCT-IHQPSATIFEMVDHLGLDSNSTNQCVA 137
+ P+ LDS + Q + L+ALA R ++ T + + ++ + +G++ ++ + +
Sbjct: 8 NRPSAPLDSQAAAQVASTLQALATPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLR 67
Query: 138 MLKALA-----RGGRTIVCTIH 154
+L+ L R GR+IV +++
Sbjct: 68 VLRNLGLVVGDRAGRSIVYSLY 89
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LSGGQK+R+S+A + N I D+P + +D+
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
Length = 152
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 43 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 96
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 97 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 141
>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
pdb|3M1N|B Chain B, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
Length = 175
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 59 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 112
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 113 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 157
>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3MXW|A Chain A, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 169
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 53 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 106
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 107 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 151
>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
Signalling Domain Of Sonic Hedgehog
Length = 162
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 49 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 102
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 103 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 147
>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 155
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 43 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 96
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 97 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 141
>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|B Chain B, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
Length = 168
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 61 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 114
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 115 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 159
>pdb|3N1R|A Chain A, Crystal Structure Of Shhn
Length = 160
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131
NP I+F DE TG D T +C L ALA + ++Q + + D +
Sbjct: 47 NPDIIFKDEENTGADRLMTQRCKDKLNALA------ISVMNQWPGVKLRVTEGWDEDGHH 100
Query: 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182
+ + +L GR + T + + M+ L V A VY S A
Sbjct: 101 SEE------SLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKA 145
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 4 SNHGTIWCWQIISAQYSHRISVDDILDTIGLVD-DILDTIGLVLSKHTLCGR----LSGG 58
SN + +++ A + DIL T G D D D G + K R LSGG
Sbjct: 225 SNFSRYFTGRVLEAVLKRTKAYLDIL-TNGRFDIDFDDEKGGFIIKDWGIERPARGLSGG 283
Query: 59 QKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
++ +SI+L + F+DE + LD+ + + ++LK L R + IV H
Sbjct: 284 ERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH 343
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 55 LSGGQK------KRLSIALELIDNP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
LSGG++ RL+IA LI N + LDEPT LD N + + + + + I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 108 VCTIHQPSATIFEMVDHLGLDSN 130
+ T H+ + +++ ++ D N
Sbjct: 341 IITHHRELEDVADVIINVKKDGN 363
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 4 SNHGTIWCWQIISAQYSHRISVDDILDTIGLVD-DILDTIGLVLSKHTLCGR----LSGG 58
SN + +++ A + DIL T G D D D G + K R LSGG
Sbjct: 225 SNFSRYFTGRVLEAVLKRTKAYLDIL-TNGRFDIDFDDEKGGFIIKDWGIERPARGLSGG 283
Query: 59 QKKRLSIAL-----ELIDNP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
++ +SI+L E+ F+DE + LD+ + + ++LK L R + IV H
Sbjct: 284 ERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH 343
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
+L+ GQ++ +++A LI P ++ LD T+ LD+ + + +L ++ RT++
Sbjct: 156 QLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Query: 113 QPSATIFEMVDH-LGLDSNSTNQCVAMLKALARGG--RTIV 150
Q S + E H L L S + L+ + RGG R++V
Sbjct: 216 QLS--LAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 23 ISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPT 82
+ D L+ DI + G + + R +K+R+ + + I N ++ P
Sbjct: 32 VEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRI-VRVGAIQNSIVIPTTAPI 90
Query: 83 TGLDSNSTNQCVAMLKALARGGRTIVCT 110
N+ M+KA A G IVCT
Sbjct: 91 EKQREAIWNKVKTMIKAAAEAGCNIVCT 118
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA--MLKALARGGRTIVCT 110
LSGGQ+ R+S+A + + + LD P LD + Q + K +A R +V +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ----CVAMLKA 99
LSGGQ+ R+S+A + + + LD P LD + Q CV L A
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ----CVAMLKA 99
LSGGQ+ R+S+A + + + LD P LD + Q CV L A
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ----CVAMLKA 99
LSGGQ+ R+S+A + + + LD P LD + Q CV L A
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG D T +C L +LA
Sbjct: 71 NPDIIFKDEKNTGADRLMTQRCKDRLNSLA 100
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ----CVAMLKA 99
LSGGQ+ R+S+A + + + LD P LD + Q CV L A
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG D T +C L +LA
Sbjct: 71 NPDIIFKDEENTGADRLMTQRCKDRLNSLA 100
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG D T +C L +LA
Sbjct: 71 NPDIIFKDEENTGADRLMTQRCKDRLNSLA 100
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ ++L IA L + LD+P++ LD +K + R + + I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 13 QIISAQYSHRI---SVDDIL---DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
+I +Y+ + +V++IL D G D++ + + + + LSGG +RL +A
Sbjct: 91 KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150
Query: 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
L+ + D+P++ LD ++ L + IV
Sbjct: 151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 170
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
GR++ G ++ + NP I+F DE +G D T +C + ALA
Sbjct: 46 GRVARGSERFRDLVPNY--NPDIIFKDEENSGADRLMTERCKERVNALA 92
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG D T +C L +LA
Sbjct: 62 NPDIIFKDEENTGADRLMTQRCKDRLNSLA 91
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 51 LCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGR 105
L GR LSGGQ++R ++A L +P ++ LDEP + LD Q M+ AL G+
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190
Query: 106 TIVCTIH 112
+ V H
Sbjct: 191 SAVFVSH 197
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 164
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
GR++ G ++ + NP I+F DE +G D T +C + ALA
Sbjct: 27 GRVARGSERFRDLVPNY--NPDIIFKDEENSGADRLMTERCKERVNALA 73
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
Human Dhh Without Calcium
pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
Human Dhh With Calcium
Length = 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
GR++ G ++ + NP I+F DE +G D T +C + ALA
Sbjct: 27 GRVARGSERFRDLVPNY--NPDIIFKDEENSGADRLMTERCKERVNALA 73
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 55 LSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LSGG++ RL+++L L ++ LDEPT LD + + +++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 107
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 55 LSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LSGG++ RL+++L L ++ LDEPT LD + + +++
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 298
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 55 LSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LSGG++ RL+++L L ++ LDEPT LD + + +++
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 318
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG + T +C L +LA
Sbjct: 71 NPDIIFKDEENTGAERLMTQRCKDRLNSLA 100
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 55 LSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LSGG++ RL+++L L ++ LDEPT LD + + +++
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 133
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 174
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 161
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P LD
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLD 162
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 55 LSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LSGG++ RL+++L L ++ LDEPT LD + + +++
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 138
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
R++ G RL+++L L ++ LDEPT LD + + +++
Sbjct: 59 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME 103
>pdb|1D5M|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1J8H|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 192
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|1BX2|B Chain B, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1BX2|E Chain E, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
Length = 191
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 142 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 179
>pdb|1YMM|B Chain B, TcrHLA-Dr2bMBP-Peptide Complex
Length = 198
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|2WBJ|B Chain B, Tcr Complex
pdb|2WBJ|F Chain F, Tcr Complex
Length = 200
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|1DLH|B Chain B, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|E Chain E, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|B Chain B, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
Length = 188
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 142 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 179
>pdb|1HXY|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1KLG|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|B Chain B, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1LO5|B Chain B, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|B Chain B, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|B Chain B, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|1R5I|B Chain B, Crystal Structure Of The Mam-Mhc Complex
pdb|1R5I|F Chain F, Crystal Structure Of The Mam-Mhc Complex
pdb|1SJE|B Chain B, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|B Chain B, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
pdb|1T5W|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|E Chain E, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5X|B Chain B, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
pdb|2G9H|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2OJE|B Chain B, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2OJE|F Chain F, Mycoplasma Arthritidis-Derived Mitogen Complexed With
Class Ii Mhc Molecule Hla-Dr1HA COMPLEX IN THE PRESENCE
OF EDTA
pdb|2IAM|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|G Chain G, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|L Chain L, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|Q Chain Q, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2ICW|B Chain B, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|E Chain E, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2IPK|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
pdb|2XN9|E Chain E, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3QXA|B Chain B, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|E Chain E, Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|B Chain B, F54c Hla-Dr1 Bound With Clip Peptide
pdb|3QXD|E Chain E, F54c Hla-Dr1 Bound With Clip Peptide
pdb|4E41|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|G Chain G, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 190
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|1FV1|B Chain B, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FV1|E Chain E, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1HQR|B Chain B, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
pdb|1H15|B Chain B, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1H15|E Chain E, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
Length = 190
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|1ZGL|B Chain B, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|E Chain E, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|H Chain H, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|K Chain K, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
Length = 192
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|2Q6W|B Chain B, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2Q6W|E Chain E, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
Length = 190
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|4AH2|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 229
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 175 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 212
>pdb|1SEB|B Chain B, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|F Chain F, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1FYT|B Chain B, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 192
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|3PDO|B Chain B, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|B Chain B, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|E Chain E, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AEN|B Chain B, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 199
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 145 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 182
>pdb|3L6F|B Chain B, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|B Chain B, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|E Chain E, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 193
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 145 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 182
>pdb|4FQX|B Chain B, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|B Chain B, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 208
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 150 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 187
>pdb|1AQD|B Chain B, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|E Chain E, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|H Chain H, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|K Chain K, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 198
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|4H1L|B Chain B, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|E Chain E, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 187
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 141 STGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 178
>pdb|2SEB|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
pdb|1D5X|B Chain B, X-ray Crystal Structure Of Hla-dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D5Z|B Chain B, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D6E|B Chain B, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
Length = 192
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLT 181
>pdb|3C5J|B Chain B, Crystal Structure Of Hla Dr52c
Length = 190
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 144 STGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 181
>pdb|1A6A|B Chain B, The Structure Of An Intermediate In Class Ii Mhc
Maturation: Clip Bound To Hla-dr3
Length = 187
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 140 STGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT 177
>pdb|3O6F|B Chain B, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|F Chain F, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|B Chain B, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 221
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 82 TTGLDSNS--TNQCVAMLKALARGGRTIVCTIHQPSAT 117
+TGL N T Q + ML+ + R G C + PS T
Sbjct: 173 STGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLT 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
+LS GQ + +L L P I+ LDEP +D+ + +K + G
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,950,067
Number of Sequences: 62578
Number of extensions: 220030
Number of successful extensions: 650
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 197
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)