Query psy8397
Match_columns 203
No_of_seqs 325 out of 1213
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:35:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 6.2E-34 1.4E-38 240.5 13.8 134 7-185 78-224 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.5E-31 1.2E-35 227.6 14.5 137 6-186 75-227 (254)
3 COG1135 AbcC ABC-type metal io 100.0 2.5E-31 5.5E-36 234.2 12.3 132 9-185 86-230 (339)
4 KOG0061|consensus 100.0 3.2E-31 6.9E-36 253.6 12.9 146 16-203 112-277 (613)
5 COG1131 CcmA ABC-type multidru 100.0 2.8E-30 6.1E-35 227.3 14.5 136 8-188 80-228 (293)
6 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-30 5.6E-35 221.7 12.9 138 6-186 79-228 (235)
7 PLN03211 ABC transporter G-25; 100.0 4.4E-30 9.6E-35 247.4 15.8 152 8-203 142-313 (659)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.3E-29 2.9E-34 216.9 14.7 134 7-185 86-234 (263)
9 TIGR00955 3a01204 The Eye Pigm 100.0 9.8E-30 2.1E-34 243.0 15.4 152 8-203 101-273 (617)
10 COG4555 NatA ABC-type Na+ tran 100.0 2.9E-30 6.2E-35 216.7 9.8 124 19-185 86-221 (245)
11 COG1120 FepC ABC-type cobalami 100.0 1.5E-29 3.2E-34 219.4 14.1 125 32-199 116-244 (258)
12 PRK13537 nodulation ABC transp 100.0 3.5E-29 7.6E-34 221.0 15.1 135 6-185 80-226 (306)
13 COG1125 OpuBA ABC-type proline 100.0 2.5E-29 5.3E-34 217.3 11.6 133 8-185 77-224 (309)
14 COG1124 DppF ABC-type dipeptid 100.0 4.7E-29 1E-33 213.6 12.6 138 5-185 81-230 (252)
15 PRK13651 cobalt transporter AT 100.0 2.6E-28 5.7E-33 215.6 16.8 147 6-196 105-267 (305)
16 COG1136 SalX ABC-type antimicr 100.0 1.7E-28 3.7E-33 209.1 14.4 123 7-175 84-220 (226)
17 TIGR01188 drrA daunorubicin re 100.0 1.9E-28 4.1E-33 215.4 14.9 133 8-185 68-212 (302)
18 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-28 5.1E-33 219.6 15.3 135 6-185 82-229 (343)
19 PRK13536 nodulation factor exp 100.0 3.4E-28 7.4E-33 218.1 15.6 135 6-185 114-260 (340)
20 PRK13643 cbiO cobalt transport 100.0 6.6E-28 1.4E-32 210.8 16.8 147 7-197 85-247 (288)
21 TIGR03258 PhnT 2-aminoethylpho 100.0 3.1E-28 6.8E-33 220.1 15.1 135 6-185 79-227 (362)
22 PRK11650 ugpC glycerol-3-phosp 100.0 4.3E-28 9.3E-33 218.6 15.5 135 6-185 76-223 (356)
23 PRK13634 cbiO cobalt transport 100.0 7.1E-28 1.5E-32 210.8 16.3 135 7-185 86-234 (290)
24 TIGR03265 PhnT2 putative 2-ami 100.0 4.5E-28 9.8E-33 218.3 15.0 135 6-185 76-223 (353)
25 PRK11432 fbpC ferric transport 100.0 5.4E-28 1.2E-32 217.7 14.8 135 6-185 78-225 (351)
26 cd03261 ABC_Org_Solvent_Resist 100.0 7.5E-28 1.6E-32 203.4 14.8 134 7-185 78-225 (235)
27 COG4175 ProV ABC-type proline/ 100.0 1.3E-28 2.9E-33 217.8 10.6 135 6-185 106-253 (386)
28 COG1116 TauB ABC-type nitrate/ 100.0 5.8E-28 1.3E-32 207.5 14.0 109 5-115 71-192 (248)
29 PRK13637 cbiO cobalt transport 100.0 1.5E-27 3.3E-32 208.5 16.9 136 6-185 83-233 (287)
30 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-27 2.6E-32 201.7 15.3 133 7-184 76-230 (236)
31 TIGR01186 proV glycine betaine 100.0 1.1E-27 2.3E-32 216.9 15.5 136 5-185 70-218 (363)
32 PRK13647 cbiO cobalt transport 100.0 1.7E-27 3.7E-32 206.8 16.2 146 7-196 80-239 (274)
33 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-27 2.5E-32 210.6 15.3 134 7-185 78-223 (303)
34 PRK13641 cbiO cobalt transport 100.0 2E-27 4.2E-32 207.6 16.3 135 7-185 86-233 (287)
35 PRK13631 cbiO cobalt transport 100.0 2.6E-27 5.6E-32 210.7 17.0 146 7-196 117-278 (320)
36 PRK15079 oligopeptide ABC tran 100.0 1.5E-27 3.2E-32 213.2 15.4 137 6-185 98-250 (331)
37 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-27 2.7E-32 245.6 16.8 153 7-203 837-1015(1394)
38 COG3839 MalK ABC-type sugar tr 100.0 5.3E-28 1.1E-32 216.6 12.3 137 4-185 73-222 (338)
39 PRK15093 antimicrobial peptide 100.0 1.9E-27 4.1E-32 212.0 15.5 136 7-185 90-247 (330)
40 COG0444 DppD ABC-type dipeptid 100.0 1.5E-27 3.2E-32 211.1 14.5 137 6-185 88-242 (316)
41 PRK10851 sulfate/thiosulfate t 100.0 1.9E-27 4.2E-32 214.2 15.5 135 6-185 74-225 (353)
42 PRK11308 dppF dipeptide transp 100.0 2.4E-27 5.1E-32 211.5 15.6 136 7-185 93-243 (327)
43 cd03256 ABC_PhnC_transporter A 100.0 2.6E-27 5.7E-32 200.0 15.1 134 7-185 79-233 (241)
44 PRK09452 potA putrescine/sperm 100.0 2E-27 4.2E-32 215.9 15.2 135 6-185 86-233 (375)
45 COG0411 LivG ABC-type branched 99.9 1.7E-27 3.6E-32 204.1 13.7 136 5-185 78-238 (250)
46 cd03265 ABC_DrrA DrrA is the A 99.9 2.8E-27 6.1E-32 198.0 14.7 133 7-184 74-219 (220)
47 PRK11022 dppD dipeptide transp 99.9 2.9E-27 6.4E-32 210.7 15.7 136 7-185 90-242 (326)
48 PRK13650 cbiO cobalt transport 99.9 3.7E-27 8E-32 205.1 15.8 145 7-196 82-242 (279)
49 PRK13636 cbiO cobalt transport 99.9 4.7E-27 1E-31 204.8 16.3 146 7-196 83-244 (283)
50 cd03259 ABC_Carb_Solutes_like 99.9 3.5E-27 7.6E-32 196.3 14.7 128 7-179 73-213 (213)
51 PRK13646 cbiO cobalt transport 99.9 4E-27 8.7E-32 205.6 15.8 136 6-185 85-234 (286)
52 PRK11000 maltose/maltodextrin 99.9 2.8E-27 6.2E-32 214.0 15.3 134 7-185 76-222 (369)
53 PLN03140 ABC transporter G fam 99.9 4.4E-27 9.5E-32 242.2 18.7 153 7-203 954-1133(1470)
54 TIGR03522 GldA_ABC_ATP gliding 99.9 2.4E-27 5.3E-32 208.4 14.5 134 7-186 76-221 (301)
55 cd03296 ABC_CysA_sulfate_impor 99.9 3.8E-27 8.3E-32 199.7 14.9 134 7-185 75-225 (239)
56 COG3638 ABC-type phosphate/pho 99.9 1E-27 2.2E-32 204.9 11.4 134 8-186 83-237 (258)
57 PRK11153 metN DL-methionine tr 99.9 3.5E-27 7.6E-32 211.4 15.4 134 7-185 83-229 (343)
58 cd03218 ABC_YhbG The ABC trans 99.9 4.2E-27 9.1E-32 197.9 14.9 134 7-185 76-221 (232)
59 TIGR00960 3a0501s02 Type II (G 99.9 3.8E-27 8.2E-32 196.5 14.3 124 7-175 81-216 (216)
60 cd03266 ABC_NatA_sodium_export 99.9 4.1E-27 8.8E-32 196.3 14.5 128 7-179 79-218 (218)
61 TIGR00956 3a01205 Pleiotropic 99.9 1.9E-27 4.2E-32 244.2 15.2 152 8-203 140-317 (1394)
62 PRK09536 btuD corrinoid ABC tr 99.9 3.5E-27 7.5E-32 216.0 15.2 134 7-185 78-227 (402)
63 TIGR02315 ABC_phnC phosphonate 99.9 3.9E-27 8.5E-32 199.4 14.4 133 8-185 81-234 (243)
64 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.6E-27 1.2E-31 202.9 15.5 134 7-185 103-249 (269)
65 PRK11607 potG putrescine trans 99.9 3.7E-27 7.9E-32 214.1 14.9 135 6-185 91-238 (377)
66 TIGR01187 potA spermidine/putr 99.9 5.1E-27 1.1E-31 208.8 15.5 134 7-185 43-189 (325)
67 PRK13639 cbiO cobalt transport 99.9 9.5E-27 2.1E-31 202.0 16.7 146 7-196 79-239 (275)
68 cd03226 ABC_cobalt_CbiO_domain 99.9 6.4E-27 1.4E-31 193.9 14.8 126 7-176 72-205 (205)
69 COG1123 ATPase components of v 99.9 2.3E-27 4.9E-32 222.5 13.5 137 6-185 367-518 (539)
70 PRK13644 cbiO cobalt transport 99.9 9.5E-27 2.1E-31 202.1 16.3 134 7-185 78-223 (274)
71 PRK09473 oppD oligopeptide tra 99.9 7.2E-27 1.6E-31 208.6 15.9 137 6-185 97-250 (330)
72 PRK11144 modC molybdate transp 99.9 5.3E-27 1.1E-31 210.9 15.1 135 6-185 76-217 (352)
73 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.6E-27 2.1E-31 194.8 15.6 131 7-182 74-219 (220)
74 COG1118 CysA ABC-type sulfate/ 99.9 2.5E-27 5.5E-32 208.8 12.6 135 6-185 77-226 (345)
75 COG3842 PotA ABC-type spermidi 99.9 1.1E-27 2.3E-32 215.7 10.3 135 6-185 77-225 (352)
76 COG1123 ATPase components of v 99.9 3.2E-27 7E-32 221.5 13.9 139 5-186 90-244 (539)
77 PRK11264 putative amino-acid A 99.9 9.1E-27 2E-31 198.2 15.3 134 7-185 86-232 (250)
78 TIGR02142 modC_ABC molybdenum 99.9 7E-27 1.5E-31 210.1 15.4 135 6-185 75-220 (354)
79 cd03268 ABC_BcrA_bacitracin_re 99.9 7.2E-27 1.6E-31 193.8 14.2 128 7-179 73-208 (208)
80 cd03258 ABC_MetN_methionine_tr 99.9 8.4E-27 1.8E-31 196.5 14.4 133 7-184 83-228 (233)
81 PRK13652 cbiO cobalt transport 99.9 1E-26 2.2E-31 202.0 15.4 135 7-185 79-226 (277)
82 cd03260 ABC_PstB_phosphate_tra 99.9 1.2E-26 2.6E-31 194.8 15.2 131 7-184 82-227 (227)
83 cd03235 ABC_Metallic_Cations A 99.9 1.3E-26 2.9E-31 192.8 14.9 103 33-179 111-213 (213)
84 TIGR02769 nickel_nikE nickel i 99.9 1.9E-26 4.1E-31 198.8 16.3 136 7-185 89-239 (265)
85 PRK10771 thiQ thiamine transpo 99.9 1.3E-26 2.8E-31 195.7 14.8 135 6-185 71-218 (232)
86 COG4598 HisP ABC-type histidin 99.9 2.5E-27 5.4E-32 196.9 10.2 131 10-185 97-240 (256)
87 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-26 3E-31 196.2 15.0 133 7-185 78-230 (242)
88 TIGR03415 ABC_choXWV_ATP choli 99.9 1.2E-26 2.7E-31 211.2 15.5 135 6-185 106-253 (382)
89 TIGR01184 ntrCD nitrate transp 99.9 1.3E-26 2.7E-31 196.1 14.5 131 9-184 57-202 (230)
90 PRK11300 livG leucine/isoleuci 99.9 1.2E-26 2.6E-31 197.9 14.5 110 33-185 132-242 (255)
91 COG1137 YhbG ABC-type (unclass 99.9 4.1E-27 8.9E-32 197.5 11.2 137 5-186 78-228 (243)
92 PRK11831 putative ABC transpor 99.9 1.5E-26 3.3E-31 199.9 15.1 134 7-185 85-232 (269)
93 PRK10070 glycine betaine trans 99.9 1.4E-26 3.1E-31 211.8 15.7 134 7-185 107-253 (400)
94 TIGR02770 nickel_nikD nickel i 99.9 1.7E-26 3.6E-31 195.0 14.9 136 7-185 63-214 (230)
95 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-26 4.1E-31 191.6 14.8 128 7-179 73-213 (213)
96 TIGR03771 anch_rpt_ABC anchore 99.9 2.4E-26 5.3E-31 193.5 15.6 109 33-185 92-200 (223)
97 PRK11231 fecE iron-dicitrate t 99.9 1.8E-26 3.9E-31 197.5 15.0 134 7-185 77-226 (255)
98 PRK13633 cobalt transporter AT 99.9 2.7E-26 5.8E-31 199.7 16.1 134 7-185 86-232 (280)
99 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.6E-26 3.5E-31 196.2 14.4 133 7-184 76-223 (242)
100 PRK09493 glnQ glutamine ABC tr 99.9 1.9E-26 4.1E-31 195.4 14.8 134 7-185 78-224 (240)
101 PRK13649 cbiO cobalt transport 99.9 4.2E-26 9E-31 197.9 16.6 135 7-185 86-233 (280)
102 cd03224 ABC_TM1139_LivF_branch 99.9 1.9E-26 4E-31 192.6 13.9 133 7-184 76-219 (222)
103 PRK13638 cbiO cobalt transport 99.9 2E-26 4.3E-31 199.3 14.5 121 33-196 115-238 (271)
104 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.1E-26 6.8E-31 190.3 15.1 128 7-179 71-211 (211)
105 PLN03140 ABC transporter G fam 99.9 6E-27 1.3E-31 241.2 13.2 127 35-203 312-444 (1470)
106 cd03269 ABC_putative_ATPase Th 99.9 2.6E-26 5.7E-31 190.7 14.6 128 7-179 71-210 (210)
107 cd03297 ABC_ModC_molybdenum_tr 99.9 3.3E-26 7.1E-31 190.9 15.1 128 7-179 76-214 (214)
108 PRK10619 histidine/lysine/argi 99.9 3.7E-26 8E-31 195.8 15.8 134 7-185 93-240 (257)
109 PRK11614 livF leucine/isoleuci 99.9 1.9E-26 4.1E-31 195.0 13.6 134 7-185 81-225 (237)
110 COG4172 ABC-type uncharacteriz 99.9 1.6E-26 3.5E-31 210.0 13.9 139 4-185 361-515 (534)
111 PRK13635 cbiO cobalt transport 99.9 4.2E-26 9.1E-31 198.7 16.1 134 7-185 82-228 (279)
112 PRK10895 lipopolysaccharide AB 99.9 2.6E-26 5.5E-31 194.7 14.3 134 7-185 79-225 (241)
113 PRK11124 artP arginine transpo 99.9 3.2E-26 6.9E-31 194.2 14.9 133 7-184 83-228 (242)
114 TIGR03005 ectoine_ehuA ectoine 99.9 3.5E-26 7.6E-31 195.2 15.1 135 6-185 87-235 (252)
115 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.8E-26 6E-31 191.3 14.1 107 7-115 83-202 (218)
116 PRK11701 phnK phosphonate C-P 99.9 4.7E-26 1E-30 195.3 15.7 136 7-185 90-240 (258)
117 PRK09984 phosphonate/organopho 99.9 3.3E-26 7.2E-31 196.6 14.5 133 7-184 87-240 (262)
118 PRK13640 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 197.7 16.2 134 7-185 85-231 (282)
119 cd03264 ABC_drug_resistance_li 99.9 3.7E-26 8.1E-31 189.9 14.1 127 7-179 73-211 (211)
120 cd03263 ABC_subfamily_A The AB 99.9 3.9E-26 8.4E-31 190.7 14.2 131 8-184 77-219 (220)
121 COG3840 ThiQ ABC-type thiamine 99.9 1.6E-26 3.5E-31 191.8 11.7 124 19-185 82-218 (231)
122 TIGR02323 CP_lyasePhnK phospho 99.9 5.4E-26 1.2E-30 194.0 15.3 111 32-185 125-237 (253)
123 cd03225 ABC_cobalt_CbiO_domain 99.9 4.1E-26 8.9E-31 189.4 14.1 123 8-174 77-211 (211)
124 PRK10253 iron-enterobactin tra 99.9 4.8E-26 1E-30 196.3 15.1 134 7-185 82-232 (265)
125 TIGR02673 FtsE cell division A 99.9 4.3E-26 9.4E-31 189.6 13.9 123 7-174 80-214 (214)
126 TIGR01277 thiQ thiamine ABC tr 99.9 8E-26 1.7E-30 188.6 15.6 129 7-180 71-212 (213)
127 cd03257 ABC_NikE_OppD_transpor 99.9 7.1E-26 1.5E-30 189.5 15.3 130 7-179 83-228 (228)
128 PRK15439 autoinducer 2 ABC tra 99.9 5.2E-26 1.1E-30 212.6 16.0 134 7-185 87-228 (510)
129 PRK13548 hmuV hemin importer A 99.9 6.7E-26 1.5E-30 194.9 15.3 134 7-185 77-229 (258)
130 PRK10261 glutathione transport 99.9 4.4E-26 9.6E-31 218.1 15.7 136 7-185 402-552 (623)
131 PRK10762 D-ribose transporter 99.9 6.5E-26 1.4E-30 211.3 16.2 134 7-185 80-229 (501)
132 PRK11247 ssuB aliphatic sulfon 99.9 8.8E-26 1.9E-30 195.0 15.8 131 7-182 82-219 (257)
133 TIGR03740 galliderm_ABC gallid 99.9 6.4E-26 1.4E-30 190.2 14.5 132 7-183 71-210 (223)
134 TIGR03873 F420-0_ABC_ATP propo 99.9 7.3E-26 1.6E-30 193.9 15.1 133 8-185 77-225 (256)
135 PRK15112 antimicrobial peptide 99.9 6E-26 1.3E-30 196.1 14.6 136 7-185 88-238 (267)
136 PRK13645 cbiO cobalt transport 99.9 5.8E-26 1.3E-30 198.2 14.6 135 7-185 91-239 (289)
137 PRK13549 xylose transporter AT 99.9 5.9E-26 1.3E-30 211.8 15.5 109 33-184 383-492 (506)
138 PRK10261 glutathione transport 99.9 4.3E-26 9.3E-31 218.2 14.9 136 7-185 105-257 (623)
139 PRK10575 iron-hydroxamate tran 99.9 6.6E-26 1.4E-30 195.4 14.6 134 7-185 86-236 (265)
140 PRK09700 D-allose transporter 99.9 7E-26 1.5E-30 211.3 16.0 134 7-185 81-233 (510)
141 PRK11629 lolD lipoprotein tran 99.9 1.4E-25 3E-30 189.5 16.3 129 7-181 88-229 (233)
142 PRK13549 xylose transporter AT 99.9 8.1E-26 1.8E-30 210.9 16.2 134 7-185 83-231 (506)
143 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.9E-26 1.9E-30 191.0 15.0 133 7-185 75-220 (236)
144 cd03299 ABC_ModC_like Archeal 99.9 1E-25 2.2E-30 190.9 15.4 134 7-185 72-218 (235)
145 TIGR01978 sufC FeS assembly AT 99.9 1.1E-25 2.4E-30 190.3 15.5 109 33-184 121-232 (243)
146 PRK13648 cbiO cobalt transport 99.9 1.8E-25 4E-30 193.0 17.0 145 7-196 84-244 (269)
147 PRK15134 microcin C ABC transp 99.9 6.3E-26 1.4E-30 212.7 15.2 136 7-185 363-514 (529)
148 PRK10418 nikD nickel transport 99.9 1.2E-25 2.5E-30 192.6 15.5 136 7-185 80-229 (254)
149 PRK10938 putative molybdenum t 99.9 5.3E-26 1.1E-30 211.0 14.3 121 22-185 99-223 (490)
150 cd03292 ABC_FtsE_transporter F 99.9 8.1E-26 1.8E-30 187.8 13.7 124 7-175 79-214 (214)
151 PRK15134 microcin C ABC transp 99.9 8.9E-26 1.9E-30 211.6 15.3 135 7-184 93-244 (529)
152 PRK13642 cbiO cobalt transport 99.9 2.2E-25 4.7E-30 193.7 16.6 135 6-185 81-228 (277)
153 TIGR02211 LolD_lipo_ex lipopro 99.9 1.6E-25 3.5E-30 187.0 15.1 107 7-115 84-203 (221)
154 PRK14247 phosphate ABC transpo 99.9 1.5E-25 3.3E-30 190.9 15.2 133 7-185 83-233 (250)
155 TIGR03269 met_CoM_red_A2 methy 99.9 1.2E-25 2.5E-30 210.3 15.7 135 8-186 111-258 (520)
156 PRK14268 phosphate ABC transpo 99.9 1.6E-25 3.4E-30 192.2 15.0 132 7-185 94-241 (258)
157 PRK10908 cell division protein 99.9 1.7E-25 3.6E-30 187.5 14.7 126 7-177 80-217 (222)
158 cd03262 ABC_HisP_GlnQ_permease 99.9 1.3E-25 2.9E-30 186.3 14.0 124 7-175 77-213 (213)
159 PRK13632 cbiO cobalt transport 99.9 2.9E-25 6.2E-30 192.2 16.5 134 7-185 84-230 (271)
160 PRK10762 D-ribose transporter 99.9 1.4E-25 2.9E-30 209.1 15.4 136 7-185 328-483 (501)
161 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-25 2.8E-30 210.0 15.2 134 8-186 367-517 (520)
162 PRK10419 nikE nickel transport 99.9 2.2E-25 4.7E-30 192.8 15.3 136 7-185 90-240 (268)
163 PRK15439 autoinducer 2 ABC tra 99.9 1.3E-25 2.8E-30 210.0 15.0 110 33-185 381-491 (510)
164 PRK15056 manganese/iron transp 99.9 2.3E-25 5.1E-30 192.8 15.5 110 32-185 120-229 (272)
165 PRK10584 putative ABC transpor 99.9 2.7E-25 5.8E-30 186.8 15.3 125 7-177 89-226 (228)
166 PRK11288 araG L-arabinose tran 99.9 1.4E-25 3E-30 209.1 14.9 110 33-185 374-484 (501)
167 COG2884 FtsE Predicted ATPase 99.9 1.8E-25 3.8E-30 186.3 13.8 130 7-181 80-221 (223)
168 cd03300 ABC_PotA_N PotA is an 99.9 2.9E-25 6.3E-30 187.6 15.1 135 6-185 72-219 (232)
169 TIGR00972 3a0107s01c2 phosphat 99.9 1.5E-25 3.2E-30 190.8 13.3 132 7-185 83-231 (247)
170 PRK11248 tauB taurine transpor 99.9 3E-25 6.6E-30 190.9 15.3 129 8-181 72-215 (255)
171 TIGR03410 urea_trans_UrtE urea 99.9 1.9E-25 4.1E-30 187.9 13.7 134 7-185 76-220 (230)
172 PRK14242 phosphate transporter 99.9 3E-25 6.5E-30 189.3 15.0 132 7-185 88-236 (253)
173 PRK10982 galactose/methyl gala 99.9 3E-25 6.6E-30 206.2 16.1 134 7-185 74-222 (491)
174 PRK09700 D-allose transporter 99.9 2.7E-25 5.8E-30 207.4 15.8 107 33-182 387-494 (510)
175 COG1117 PstB ABC-type phosphat 99.9 5.6E-26 1.2E-30 192.2 10.0 132 7-185 89-236 (253)
176 PRK03695 vitamin B12-transport 99.9 4.3E-25 9.3E-30 188.9 15.3 133 8-185 71-221 (248)
177 cd03234 ABCG_White The White s 99.9 6.7E-25 1.4E-29 184.6 16.1 129 7-179 82-226 (226)
178 TIGR00968 3a0106s01 sulfate AB 99.9 3.8E-25 8.2E-30 187.7 14.7 135 6-185 72-219 (237)
179 PRK14267 phosphate ABC transpo 99.9 4.7E-25 1E-29 188.1 14.8 133 7-185 86-236 (253)
180 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.2E-25 6.9E-30 187.1 13.4 118 19-179 95-224 (224)
181 PRK14250 phosphate ABC transpo 99.9 2.9E-25 6.3E-30 188.8 13.2 133 7-185 78-220 (241)
182 TIGR02633 xylG D-xylose ABC tr 99.9 6.2E-25 1.4E-29 204.3 16.3 133 7-184 79-228 (500)
183 PRK10744 pstB phosphate transp 99.9 6.1E-25 1.3E-29 188.7 14.7 132 7-185 95-243 (260)
184 CHL00131 ycf16 sulfate ABC tra 99.9 6.7E-25 1.5E-29 186.9 14.5 108 33-183 128-238 (252)
185 PRK14239 phosphate transporter 99.9 8.2E-25 1.8E-29 186.3 15.0 132 7-185 87-235 (252)
186 PRK14256 phosphate ABC transpo 99.9 1E-24 2.2E-29 186.2 15.4 133 7-185 86-235 (252)
187 PRK14245 phosphate ABC transpo 99.9 4.3E-25 9.4E-30 188.3 13.0 132 7-185 85-233 (250)
188 PRK14273 phosphate ABC transpo 99.9 4.4E-25 9.5E-30 188.6 12.9 132 7-185 89-237 (254)
189 PRK13547 hmuV hemin importer A 99.9 7.6E-25 1.6E-29 190.6 14.5 110 33-185 124-243 (272)
190 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-25 1.5E-29 204.1 15.0 109 33-184 381-490 (500)
191 PRK14241 phosphate transporter 99.9 1.1E-24 2.4E-29 186.8 15.0 133 7-185 86-241 (258)
192 PRK14258 phosphate ABC transpo 99.9 1.3E-24 2.9E-29 186.9 15.3 132 8-185 90-244 (261)
193 PRK09544 znuC high-affinity zi 99.9 8.4E-25 1.8E-29 188.0 13.7 119 23-185 84-208 (251)
194 cd03267 ABC_NatA_like Similar 99.9 7.4E-25 1.6E-29 186.0 13.1 118 19-179 106-236 (236)
195 PRK11288 araG L-arabinose tran 99.9 1.4E-24 3E-29 202.3 16.1 130 7-181 80-224 (501)
196 PRK14272 phosphate ABC transpo 99.9 1.7E-24 3.8E-29 184.3 15.3 133 7-185 86-235 (252)
197 COG4161 ArtP ABC-type arginine 99.9 5.1E-25 1.1E-29 180.7 11.3 121 21-184 95-228 (242)
198 PRK09580 sufC cysteine desulfu 99.9 1.9E-24 4.1E-29 183.5 14.8 110 32-184 121-233 (248)
199 COG0410 LivF ABC-type branched 99.9 1.2E-24 2.7E-29 185.2 13.0 137 5-186 77-226 (237)
200 PRK14244 phosphate ABC transpo 99.9 1.2E-24 2.6E-29 185.6 13.0 132 7-185 87-236 (251)
201 PRK14262 phosphate ABC transpo 99.9 2.7E-24 5.9E-29 183.2 15.1 133 6-185 84-233 (250)
202 PRK14269 phosphate ABC transpo 99.9 1.3E-24 2.8E-29 185.1 13.1 132 7-185 80-229 (246)
203 PRK14251 phosphate ABC transpo 99.9 2.5E-24 5.4E-29 183.5 14.5 133 6-185 85-234 (251)
204 PRK14274 phosphate ABC transpo 99.9 1.5E-24 3.4E-29 186.0 13.1 108 34-185 131-242 (259)
205 cd03214 ABC_Iron-Siderophores_ 99.9 1.5E-24 3.2E-29 177.0 12.3 103 34-179 77-180 (180)
206 COG4152 ABC-type uncharacteriz 99.9 6.4E-25 1.4E-29 189.0 10.5 125 19-186 83-219 (300)
207 PRK14259 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 186.3 14.2 132 7-185 95-252 (269)
208 TIGR01257 rim_protein retinal- 99.9 1.5E-24 3.3E-29 227.7 15.2 137 7-188 2013-2161(2272)
209 PRK14260 phosphate ABC transpo 99.9 3.8E-24 8.2E-29 183.7 14.7 132 7-185 89-242 (259)
210 PRK14248 phosphate ABC transpo 99.9 1.8E-24 3.8E-29 186.6 12.8 132 7-185 103-251 (268)
211 PRK14235 phosphate transporter 99.9 2.1E-24 4.5E-29 186.5 13.2 132 7-185 101-250 (267)
212 PRK14270 phosphate ABC transpo 99.9 2.2E-24 4.8E-29 184.0 13.1 133 6-185 85-234 (251)
213 COG4148 ModC ABC-type molybdat 99.9 4.9E-25 1.1E-29 192.8 9.1 134 7-185 77-217 (352)
214 PRK14240 phosphate transporter 99.9 2.7E-24 5.8E-29 183.2 13.3 132 7-185 85-233 (250)
215 TIGR03608 L_ocin_972_ABC putat 99.9 5.4E-24 1.2E-28 175.9 14.3 107 7-115 77-195 (206)
216 PRK14254 phosphate ABC transpo 99.9 5.4E-24 1.2E-28 186.1 14.9 132 7-185 121-268 (285)
217 PRK14255 phosphate ABC transpo 99.9 6.3E-24 1.4E-28 181.1 14.8 132 7-185 87-235 (252)
218 PRK13546 teichoic acids export 99.9 4.3E-24 9.4E-29 185.2 14.0 125 19-186 96-232 (264)
219 PRK14263 phosphate ABC transpo 99.9 8.2E-24 1.8E-28 182.5 15.2 133 6-185 89-244 (261)
220 PRK10982 galactose/methyl gala 99.9 3.4E-24 7.3E-29 199.2 13.6 110 32-184 368-478 (491)
221 PRK14257 phosphate ABC transpo 99.9 7.5E-24 1.6E-28 189.2 15.0 133 6-185 163-312 (329)
222 cd03252 ABCC_Hemolysin The ABC 99.9 3.5E-24 7.5E-29 181.0 12.1 98 43-185 127-224 (237)
223 TIGR02982 heterocyst_DevA ABC 99.9 7.9E-24 1.7E-28 177.4 14.2 124 6-175 82-219 (220)
224 COG4181 Predicted ABC-type tra 99.9 5.1E-24 1.1E-28 175.7 12.7 125 7-177 89-226 (228)
225 PRK14265 phosphate ABC transpo 99.9 8.3E-24 1.8E-28 183.7 14.7 132 7-185 102-257 (274)
226 PRK14249 phosphate ABC transpo 99.9 5.5E-24 1.2E-28 181.6 13.1 133 6-185 85-234 (251)
227 PRK14275 phosphate ABC transpo 99.9 4.6E-24 9.9E-29 186.5 12.8 132 7-185 121-269 (286)
228 PRK13545 tagH teichoic acids e 99.9 5E-24 1.1E-28 200.6 13.8 125 19-186 96-232 (549)
229 PRK14253 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 180.8 13.1 131 7-184 84-231 (249)
230 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.2E-23 2.5E-28 180.7 14.7 130 21-193 74-218 (246)
231 PRK14236 phosphate transporter 99.9 6.5E-24 1.4E-28 183.8 13.1 133 6-185 106-255 (272)
232 PRK14246 phosphate ABC transpo 99.9 1.9E-23 4E-28 180.0 15.2 133 7-185 91-240 (257)
233 cd03289 ABCC_CFTR2 The CFTR su 99.9 5.5E-24 1.2E-28 185.9 12.0 132 7-186 78-225 (275)
234 cd03251 ABCC_MsbA MsbA is an e 99.9 6.4E-24 1.4E-28 178.8 11.8 105 36-185 118-224 (234)
235 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 7.7E-24 1.7E-28 178.9 12.1 99 43-186 128-226 (238)
236 cd03245 ABCC_bacteriocin_expor 99.9 8.3E-24 1.8E-28 176.6 12.1 125 7-179 79-220 (220)
237 COG4172 ABC-type uncharacteriz 99.9 1.1E-23 2.4E-28 191.6 13.8 137 6-185 93-246 (534)
238 PRK14237 phosphate transporter 99.9 1.2E-23 2.6E-28 181.7 13.4 132 7-185 102-250 (267)
239 TIGR01166 cbiO cobalt transpor 99.9 1.3E-23 2.8E-28 172.2 12.8 109 7-116 69-189 (190)
240 TIGR01257 rim_protein retinal- 99.9 1.2E-23 2.6E-28 220.9 15.8 134 7-186 1004-1149(2272)
241 PRK15064 ABC transporter ATP-b 99.9 1.2E-23 2.7E-28 197.2 14.1 131 8-184 384-523 (530)
242 PRK14243 phosphate transporter 99.9 1.3E-23 2.8E-28 181.3 12.9 132 7-185 92-247 (264)
243 COG4608 AppF ABC-type oligopep 99.9 7.5E-24 1.6E-28 184.0 11.4 113 30-185 84-198 (268)
244 cd03270 ABC_UvrA_I The excisio 99.9 2.5E-23 5.4E-28 176.2 14.3 100 36-179 118-226 (226)
245 PRK14238 phosphate transporter 99.9 1.1E-23 2.3E-28 182.6 12.2 132 7-185 106-254 (271)
246 PRK14261 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 179.5 12.5 132 7-185 88-236 (253)
247 PRK14252 phosphate ABC transpo 99.9 2.9E-23 6.4E-28 178.8 14.6 109 33-185 136-248 (265)
248 PRK14266 phosphate ABC transpo 99.9 1.6E-23 3.4E-28 178.4 12.8 133 6-185 84-233 (250)
249 cd03244 ABCC_MRP_domain2 Domai 99.9 2.1E-23 4.5E-28 174.3 13.0 126 7-180 79-220 (221)
250 PRK14271 phosphate ABC transpo 99.9 1.8E-23 4E-28 181.8 13.2 132 7-185 102-250 (276)
251 COG4559 ABC-type hemin transpo 99.9 2.3E-23 5.1E-28 176.3 13.2 135 17-194 84-241 (259)
252 cd03213 ABCG_EPDR ABCG transpo 99.9 4.7E-23 1E-27 170.4 14.5 111 8-179 84-194 (194)
253 PRK13543 cytochrome c biogenes 99.9 4.5E-23 9.8E-28 172.5 14.4 106 8-115 84-198 (214)
254 cd03271 ABC_UvrA_II The excisi 99.9 5.8E-23 1.3E-27 178.6 15.6 117 21-181 129-261 (261)
255 cd03232 ABC_PDR_domain2 The pl 99.9 5.4E-23 1.2E-27 169.6 14.6 112 7-179 80-192 (192)
256 PRK10938 putative molybdenum t 99.9 2.1E-23 4.7E-28 193.6 13.5 104 33-179 379-485 (490)
257 cd03254 ABCC_Glucan_exporter_l 99.9 1.9E-23 4.1E-28 175.4 11.9 98 43-185 128-225 (229)
258 KOG0065|consensus 99.9 8.4E-25 1.8E-29 219.2 4.2 130 32-203 903-1043(1391)
259 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.6E-23 7.8E-28 171.6 13.2 93 52-188 102-195 (200)
260 cd03215 ABC_Carb_Monos_II This 99.9 3.1E-23 6.8E-28 169.5 12.4 106 7-175 76-182 (182)
261 PRK15177 Vi polysaccharide exp 99.9 4.3E-23 9.2E-28 173.2 13.5 130 18-191 59-197 (213)
262 cd03253 ABCC_ATM1_transporter 99.9 2.3E-23 5.1E-28 175.6 11.8 98 43-185 126-223 (236)
263 COG4604 CeuD ABC-type enteroch 99.9 8.6E-24 1.9E-28 177.5 8.8 117 31-190 112-231 (252)
264 TIGR02324 CP_lyasePhnL phospho 99.9 6.7E-23 1.5E-27 171.8 14.0 106 7-114 91-209 (224)
265 PRK10247 putative ABC transpor 99.9 6E-23 1.3E-27 172.9 13.6 106 7-115 82-199 (225)
266 PRK13538 cytochrome c biogenes 99.9 5.7E-23 1.2E-27 170.5 13.1 97 19-115 85-190 (204)
267 PRK14264 phosphate ABC transpo 99.9 3.5E-23 7.6E-28 182.5 12.6 108 34-185 176-288 (305)
268 cd03233 ABC_PDR_domain1 The pl 99.9 1.5E-22 3.1E-27 168.4 15.2 118 7-179 84-202 (202)
269 cd03231 ABC_CcmA_heme_exporter 99.9 8.9E-23 1.9E-27 169.2 13.7 107 7-115 74-186 (201)
270 PRK15064 ABC transporter ATP-b 99.9 7.6E-23 1.6E-27 191.9 14.8 107 33-185 133-241 (530)
271 COG1129 MglA ABC-type sugar tr 99.9 6.4E-23 1.4E-27 191.3 14.1 137 3-184 80-233 (500)
272 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.2E-22 2.7E-27 168.5 14.1 124 6-181 82-207 (207)
273 PRK13409 putative ATPase RIL; 99.9 8.5E-23 1.8E-27 194.9 14.5 132 20-195 412-558 (590)
274 COG4586 ABC-type uncharacteriz 99.9 3.9E-23 8.5E-28 180.1 10.8 113 31-186 133-246 (325)
275 PRK11174 cysteine/glutathione 99.9 1E-22 2.2E-27 192.6 13.1 131 7-185 424-571 (588)
276 PRK10535 macrolide transporter 99.9 3.1E-22 6.7E-27 192.5 16.7 134 6-185 86-231 (648)
277 cd03238 ABC_UvrA The excision 99.9 2.3E-22 4.9E-27 165.5 13.5 80 36-115 68-150 (176)
278 cd03230 ABC_DR_subfamily_A Thi 99.9 1.7E-22 3.7E-27 163.9 12.3 78 55-175 96-173 (173)
279 cd03248 ABCC_TAP TAP, the Tran 99.9 1E-22 2.2E-27 170.9 11.2 80 35-115 129-210 (226)
280 cd03288 ABCC_SUR2 The SUR doma 99.9 1.6E-22 3.4E-27 173.7 12.3 98 43-185 145-242 (257)
281 PRK11819 putative ABC transpor 99.9 2.4E-22 5.2E-27 189.9 14.6 103 34-183 144-247 (556)
282 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.6E-22 3.5E-27 174.7 12.1 84 32-115 117-200 (255)
283 PRK10636 putative ABC transpor 99.9 2.1E-22 4.5E-27 193.5 13.4 109 32-186 407-517 (638)
284 PRK13539 cytochrome c biogenes 99.9 2.6E-22 5.6E-27 167.1 12.2 98 19-116 84-189 (207)
285 cd03247 ABCC_cytochrome_bd The 99.9 3.6E-22 7.8E-27 162.5 12.8 83 52-179 96-178 (178)
286 TIGR01842 type_I_sec_PrtD type 99.9 4.8E-22 1E-26 186.9 15.0 99 43-185 443-541 (544)
287 PRK11160 cysteine/glutathione 99.9 4.2E-22 9.2E-27 188.7 14.3 131 7-185 415-561 (574)
288 cd03216 ABC_Carb_Monos_I This 99.9 2.9E-22 6.3E-27 161.6 11.3 80 55-177 83-162 (163)
289 PRK10790 putative multidrug tr 99.9 4.2E-22 9E-27 188.7 14.0 131 7-185 416-562 (592)
290 cd03246 ABCC_Protease_Secretio 99.9 4E-22 8.7E-27 161.7 11.8 60 55-114 97-156 (173)
291 TIGR01189 ccmA heme ABC export 99.9 5.8E-22 1.3E-26 163.6 12.9 107 8-116 75-189 (198)
292 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.5E-22 7.6E-27 192.4 13.3 129 7-185 528-672 (686)
293 COG1132 MdlB ABC-type multidru 99.9 3.9E-22 8.4E-27 188.2 12.9 119 23-186 417-552 (567)
294 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.7E-22 1E-26 192.0 13.1 130 7-186 554-700 (710)
295 KOG0059|consensus 99.9 1.6E-22 3.4E-27 200.6 9.9 137 4-143 638-786 (885)
296 cd03229 ABC_Class3 This class 99.9 5.2E-22 1.1E-26 161.7 11.3 77 55-174 101-178 (178)
297 PRK11819 putative ABC transpor 99.9 1.2E-21 2.6E-26 185.2 15.0 130 9-185 390-532 (556)
298 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.3E-21 2.7E-26 184.7 15.1 131 8-185 387-530 (552)
299 cd03290 ABCC_SUR1_N The SUR do 99.9 1.3E-21 2.9E-26 163.5 13.5 106 7-115 80-203 (218)
300 TIGR03375 type_I_sec_LssB type 99.9 6.2E-22 1.3E-26 190.9 13.1 133 7-187 540-689 (694)
301 COG2274 SunT ABC-type bacterio 99.9 3.4E-22 7.4E-27 193.9 11.2 92 50-186 605-696 (709)
302 PRK11176 lipid transporter ATP 99.9 8.4E-22 1.8E-26 185.9 13.3 130 8-185 419-566 (582)
303 PRK13540 cytochrome c biogenes 99.9 1.7E-21 3.6E-26 161.3 12.7 107 8-116 76-189 (200)
304 TIGR01193 bacteriocin_ABC ABC- 99.9 1.6E-21 3.4E-26 188.5 13.8 131 7-186 549-697 (708)
305 COG4987 CydC ABC-type transpor 99.9 9.4E-22 2E-26 183.5 11.6 110 32-186 441-561 (573)
306 PRK10636 putative ABC transpor 99.9 1.1E-21 2.4E-26 188.4 12.3 106 33-184 127-234 (638)
307 PRK10789 putative multidrug tr 99.9 2.4E-21 5.2E-26 183.3 14.0 131 7-185 390-537 (569)
308 PRK13409 putative ATPase RIL; 99.9 1.8E-21 3.9E-26 185.8 13.2 91 24-115 179-272 (590)
309 COG4988 CydD ABC-type transpor 99.9 1.3E-21 2.9E-26 183.7 12.0 130 8-185 397-542 (559)
310 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-21 3.2E-26 184.3 12.3 105 33-184 141-246 (552)
311 cd03291 ABCC_CFTR1 The CFTR su 99.9 7.3E-21 1.6E-25 166.7 15.5 129 9-185 101-246 (282)
312 TIGR02203 MsbA_lipidA lipid A 99.9 1.6E-21 3.6E-26 183.2 12.1 120 21-185 418-555 (571)
313 PRK13541 cytochrome c biogenes 99.9 3.2E-21 6.9E-26 159.0 12.3 98 19-116 81-185 (195)
314 PRK11147 ABC transporter ATPas 99.9 1.9E-21 4.1E-26 186.6 12.5 104 32-183 136-240 (635)
315 COG4525 TauB ABC-type taurine 99.9 2.6E-21 5.7E-26 162.5 11.6 122 18-182 84-220 (259)
316 COG1119 ModF ABC-type molybden 99.9 2.3E-21 5E-26 166.6 11.5 107 31-180 148-256 (257)
317 KOG0055|consensus 99.9 1.9E-21 4.1E-26 194.7 12.3 121 21-186 439-576 (1228)
318 PLN03073 ABC transporter F fam 99.9 2.6E-21 5.7E-26 188.3 12.8 109 32-186 604-714 (718)
319 TIGR01192 chvA glucan exporter 99.9 5.9E-21 1.3E-25 181.4 14.7 96 45-185 462-557 (585)
320 TIGR02204 MsbA_rel ABC transpo 99.9 4.1E-21 8.9E-26 180.9 13.5 131 7-185 415-562 (576)
321 COG4674 Uncharacterized ABC-ty 99.9 1.7E-21 3.6E-26 163.5 9.5 134 6-185 81-234 (249)
322 cd03228 ABCC_MRP_Like The MRP 99.9 3.7E-21 8E-26 155.8 11.1 60 55-115 97-156 (171)
323 COG3845 ABC-type uncharacteriz 99.9 3.9E-21 8.4E-26 177.8 12.4 133 3-180 76-223 (501)
324 TIGR00958 3a01208 Conjugate Tr 99.9 4E-21 8.7E-26 186.3 12.9 129 8-186 557-702 (711)
325 TIGR01846 type_I_sec_HlyB type 99.9 4.7E-21 1E-25 185.0 13.1 130 8-185 533-679 (694)
326 PRK13657 cyclic beta-1,2-gluca 99.9 8.3E-21 1.8E-25 179.9 14.5 131 7-185 410-557 (588)
327 PRK11147 ABC transporter ATPas 99.9 7.7E-21 1.7E-25 182.4 14.2 130 8-184 384-526 (635)
328 PLN03073 ABC transporter F fam 99.8 6.5E-21 1.4E-25 185.5 12.7 106 32-183 321-428 (718)
329 PRK00349 uvrA excinuclease ABC 99.8 7.3E-21 1.6E-25 189.3 12.9 109 32-185 467-584 (943)
330 cd03250 ABCC_MRP_domain1 Domai 99.8 8.3E-21 1.8E-25 157.2 10.5 70 46-115 119-189 (204)
331 TIGR01194 cyc_pep_trnsptr cycl 99.8 2E-20 4.3E-25 176.7 13.9 104 31-178 441-551 (555)
332 cd03223 ABCD_peroxisomal_ALDP 99.8 2.8E-20 6.1E-25 150.4 12.3 61 51-114 88-148 (166)
333 cd03222 ABC_RNaseL_inhibitor T 99.8 2E-20 4.2E-25 154.1 11.2 88 55-185 72-162 (177)
334 COG0396 sufC Cysteine desulfur 99.8 7.1E-20 1.5E-24 156.3 14.9 143 6-195 81-242 (251)
335 KOG0055|consensus 99.8 8E-21 1.7E-25 190.3 10.6 117 23-186 1091-1213(1228)
336 TIGR00630 uvra excinuclease AB 99.8 2.4E-20 5.3E-25 185.2 13.9 104 38-185 470-582 (924)
337 PRK10522 multidrug transporter 99.8 3.9E-20 8.4E-25 174.2 14.1 104 32-179 422-531 (547)
338 PTZ00265 multidrug resistance 99.8 1.9E-20 4.2E-25 193.4 12.6 131 8-185 1298-1451(1466)
339 PLN03232 ABC transporter C fam 99.8 2.9E-20 6.4E-25 192.5 13.0 130 8-185 1312-1457(1495)
340 COG4107 PhnK ABC-type phosphon 99.8 5.7E-20 1.2E-24 152.5 11.5 113 30-185 126-240 (258)
341 KOG0058|consensus 99.8 2.2E-20 4.8E-25 178.9 10.4 99 43-186 589-691 (716)
342 PLN03130 ABC transporter C fam 99.8 4.5E-20 9.7E-25 192.2 13.3 118 23-185 1327-1460(1622)
343 PRK00349 uvrA excinuclease ABC 99.8 1.1E-19 2.4E-24 180.8 15.2 119 23-185 792-926 (943)
344 PTZ00265 multidrug resistance 99.8 5.2E-20 1.1E-24 190.3 12.7 83 33-115 547-641 (1466)
345 TIGR00957 MRP_assoc_pro multi 99.8 6.9E-20 1.5E-24 190.0 13.4 119 23-186 1374-1508(1522)
346 COG1129 MglA ABC-type sugar tr 99.8 7.8E-20 1.7E-24 170.7 12.2 109 32-183 378-487 (500)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 6.8E-20 1.5E-24 145.3 9.7 76 53-174 69-144 (144)
348 TIGR00630 uvra excinuclease AB 99.8 2.2E-19 4.7E-24 178.5 15.2 119 22-184 789-923 (924)
349 PRK00635 excinuclease ABC subu 99.8 1.7E-19 3.7E-24 187.3 14.3 108 33-185 788-905 (1809)
350 TIGR01271 CFTR_protein cystic 99.8 1.4E-19 3.1E-24 187.4 13.5 131 7-185 1293-1439(1490)
351 TIGR00954 3a01203 Peroxysomal 99.8 2.4E-19 5.1E-24 173.0 13.8 103 7-115 516-640 (659)
352 PTZ00243 ABC transporter; Prov 99.8 1.6E-19 3.4E-24 187.7 13.4 130 8-185 1386-1532(1560)
353 KOG0057|consensus 99.8 9.8E-20 2.1E-24 170.3 10.7 110 32-186 454-574 (591)
354 PLN03232 ABC transporter C fam 99.8 2.3E-19 5E-24 185.9 13.8 131 7-185 680-827 (1495)
355 cd00267 ABC_ATPase ABC (ATP-bi 99.8 2E-19 4.3E-24 143.3 10.3 61 55-115 81-141 (157)
356 cd03279 ABC_sbcCD SbcCD and ot 99.8 2E-19 4.3E-24 150.7 10.5 77 39-115 108-194 (213)
357 COG1134 TagH ABC-type polysacc 99.8 3.8E-19 8.3E-24 152.7 12.4 133 15-190 96-240 (249)
358 KOG0065|consensus 99.8 6.6E-20 1.4E-24 184.3 7.5 128 34-203 235-368 (1391)
359 COG1101 PhnK ABC-type uncharac 99.8 4.1E-19 8.8E-24 150.9 11.0 129 8-179 82-231 (263)
360 TIGR02857 CydD thiol reductant 99.8 4.8E-19 1E-23 165.7 12.2 105 7-115 397-518 (529)
361 PRK00635 excinuclease ABC subu 99.8 7.3E-19 1.6E-23 182.7 14.4 104 38-185 459-571 (1809)
362 PLN03130 ABC transporter C fam 99.8 7.1E-19 1.5E-23 183.3 14.2 131 7-185 680-827 (1622)
363 PTZ00243 ABC transporter; Prov 99.8 1.5E-18 3.3E-23 180.4 15.4 131 8-185 723-869 (1560)
364 COG0488 Uup ATPase components 99.8 7E-19 1.5E-23 166.2 11.1 105 33-184 133-238 (530)
365 cd03278 ABC_SMC_barmotin Barmo 99.8 1.2E-18 2.6E-23 145.1 10.8 96 7-114 77-176 (197)
366 TIGR01271 CFTR_protein cystic 99.8 2E-18 4.4E-23 178.9 14.8 130 8-185 489-635 (1490)
367 TIGR00957 MRP_assoc_pro multi 99.8 2.4E-18 5.1E-23 178.7 14.4 131 8-185 701-849 (1522)
368 cd03273 ABC_SMC2_euk Eukaryoti 99.8 2.7E-18 5.8E-23 147.0 12.3 83 31-114 123-229 (251)
369 COG4167 SapF ABC-type antimicr 99.8 2.9E-18 6.2E-23 143.3 11.7 133 10-185 91-238 (267)
370 COG4619 ABC-type uncharacteriz 99.8 2.2E-18 4.7E-23 142.1 9.9 101 32-175 110-212 (223)
371 TIGR02868 CydC thiol reductant 99.8 2.5E-18 5.4E-23 160.8 11.4 104 7-114 409-529 (529)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.8 3.1E-18 6.7E-23 144.9 10.9 66 47-113 151-220 (243)
373 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2.6E-18 5.6E-23 143.2 10.1 81 32-115 90-177 (198)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.8 5.1E-18 1.1E-22 145.3 10.6 83 32-114 111-219 (247)
375 COG4618 ArpD ABC-type protease 99.7 4.4E-18 9.6E-23 158.3 10.3 103 43-189 457-563 (580)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.7 7.9E-18 1.7E-22 141.8 8.6 77 36-113 109-189 (212)
377 COG5265 ATM1 ABC-type transpor 99.7 1.5E-17 3.2E-22 152.1 8.5 98 44-186 385-486 (497)
378 cd03240 ABC_Rad50 The catalyti 99.7 5.6E-17 1.2E-21 135.7 9.8 66 49-114 110-183 (204)
379 KOG0054|consensus 99.7 2.6E-16 5.7E-21 160.5 12.6 132 8-186 584-731 (1381)
380 COG4133 CcmA ABC-type transpor 99.7 8.1E-16 1.8E-20 128.2 10.5 95 21-115 88-191 (209)
381 COG0488 Uup ATPase components 99.6 5.9E-16 1.3E-20 146.4 10.7 115 22-183 400-522 (530)
382 COG4136 ABC-type uncharacteriz 99.6 4.4E-16 9.5E-21 126.8 8.3 101 16-116 85-197 (213)
383 cd03277 ABC_SMC5_euk Eukaryoti 99.6 4.7E-16 1E-20 131.2 8.8 70 46-115 118-193 (213)
384 KOG0056|consensus 99.6 6.4E-16 1.4E-20 144.0 10.5 100 42-186 658-761 (790)
385 COG4138 BtuD ABC-type cobalami 99.6 3.7E-17 8.1E-22 135.8 2.0 120 31-193 102-231 (248)
386 COG4778 PhnL ABC-type phosphon 99.6 5.8E-16 1.3E-20 128.1 7.0 95 31-126 128-223 (235)
387 COG1245 Predicted ATPase, RNas 99.6 1.3E-15 2.9E-20 140.7 9.8 91 24-114 180-273 (591)
388 COG3845 ABC-type uncharacteriz 99.6 1.5E-15 3.2E-20 141.0 10.1 112 30-184 378-490 (501)
389 KOG0927|consensus 99.6 1.1E-15 2.5E-20 143.1 9.1 109 32-185 198-308 (614)
390 cd03239 ABC_SMC_head The struc 99.6 3.6E-15 7.9E-20 122.5 10.7 60 55-114 95-158 (178)
391 COG0178 UvrA Excinuclease ATPa 99.6 7E-15 1.5E-19 142.9 12.9 120 23-186 784-919 (935)
392 COG4170 SapD ABC-type antimicr 99.6 7.1E-16 1.5E-20 131.5 5.1 112 31-185 132-247 (330)
393 COG1245 Predicted ATPase, RNas 99.6 8.2E-15 1.8E-19 135.5 11.9 105 8-114 403-516 (591)
394 TIGR00618 sbcc exonuclease Sbc 99.6 5.7E-15 1.2E-19 148.8 11.0 71 45-115 941-1021(1042)
395 cd03241 ABC_RecN RecN ATPase i 99.6 5E-15 1.1E-19 128.9 9.1 60 54-114 170-233 (276)
396 cd03280 ABC_MutS2 MutS2 homolo 99.6 5E-15 1.1E-19 122.9 7.9 97 38-179 75-172 (200)
397 KOG0054|consensus 99.6 1.3E-14 2.8E-19 148.3 11.5 89 53-186 1274-1362(1381)
398 KOG0062|consensus 99.6 1.2E-14 2.6E-19 135.6 9.8 105 32-182 459-565 (582)
399 PHA02562 46 endonuclease subun 99.5 1.3E-14 2.9E-19 136.3 8.9 64 49-114 463-537 (562)
400 cd03227 ABC_Class2 ABC-type Cl 99.5 3.7E-14 8E-19 114.2 9.1 63 53-115 76-142 (162)
401 TIGR00634 recN DNA repair prot 99.5 3E-14 6.5E-19 135.5 9.5 61 53-114 439-503 (563)
402 PF00005 ABC_tran: ABC transpo 99.5 4.9E-14 1.1E-18 108.8 7.8 73 8-83 61-137 (137)
403 KOG0062|consensus 99.5 4E-14 8.7E-19 132.1 8.0 86 37-126 180-266 (582)
404 KOG0927|consensus 99.5 2.6E-14 5.7E-19 134.0 6.6 80 32-114 486-566 (614)
405 PRK10869 recombination and rep 99.5 1.6E-13 3.5E-18 130.5 10.4 60 54-114 430-493 (553)
406 PRK03918 chromosome segregatio 99.5 2E-13 4.3E-18 134.6 10.0 67 48-114 782-854 (880)
407 PRK10246 exonuclease subunit S 99.4 3.8E-13 8.2E-18 136.0 10.4 66 48-113 943-1016(1047)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.4 3.7E-13 8E-18 114.3 6.0 73 36-113 74-152 (222)
409 PRK01156 chromosome segregatio 99.4 3.9E-12 8.5E-17 126.2 13.3 81 34-114 765-870 (895)
410 TIGR02168 SMC_prok_B chromosom 99.4 1.4E-12 2.9E-17 130.2 7.9 68 47-115 1082-1153(1179)
411 COG0178 UvrA Excinuclease ATPa 99.4 8.2E-12 1.8E-16 121.8 12.8 105 38-186 464-577 (935)
412 COG4178 ABC-type uncharacteriz 99.3 2.6E-12 5.7E-17 122.7 8.0 83 32-115 487-575 (604)
413 KOG0066|consensus 99.3 3.7E-12 8.1E-17 118.0 8.2 79 32-113 681-760 (807)
414 KOG2355|consensus 99.3 9.7E-12 2.1E-16 105.9 8.3 133 5-182 92-233 (291)
415 TIGR00606 rad50 rad50. This fa 99.3 5.8E-12 1.3E-16 129.9 8.3 68 49-116 1194-1272(1311)
416 cd03242 ABC_RecF RecF is a rec 99.3 1.1E-11 2.3E-16 107.7 7.7 58 52-113 181-247 (270)
417 cd03243 ABC_MutS_homologs The 99.3 1.4E-11 3.1E-16 102.2 8.0 71 43-114 80-151 (202)
418 TIGR02169 SMC_prok_A chromosom 99.2 1.8E-11 3.8E-16 122.8 8.6 66 48-114 1068-1137(1164)
419 KOG0066|consensus 99.2 3.1E-12 6.7E-17 118.6 2.0 81 32-115 389-470 (807)
420 smart00534 MUTSac ATPase domai 99.2 8.1E-12 1.8E-16 102.7 4.3 79 36-115 43-123 (185)
421 PRK02224 chromosome segregatio 99.2 6.5E-11 1.4E-15 117.2 9.3 64 51-114 778-854 (880)
422 COG4615 PvdE ABC-type sideroph 99.2 5.2E-11 1.1E-15 109.2 6.7 104 32-179 421-530 (546)
423 PRK00064 recF recombination pr 99.1 1.3E-10 2.8E-15 105.2 8.5 62 51-115 270-340 (361)
424 TIGR00611 recf recF protein. A 99.0 4.1E-10 8.8E-15 102.3 6.9 59 54-115 275-342 (365)
425 cd03282 ABC_MSH4_euk MutS4 hom 99.0 6.1E-10 1.3E-14 93.6 5.8 79 36-115 73-152 (204)
426 TIGR02680 conserved hypothetic 99.0 1.2E-09 2.5E-14 113.4 7.8 66 47-115 1240-1317(1353)
427 COG0419 SbcC ATPase involved i 98.9 4.2E-09 9E-14 105.4 10.2 64 50-113 811-882 (908)
428 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.2E-08 2.7E-13 85.0 11.2 75 32-113 120-198 (220)
429 PF13304 AAA_21: AAA domain; P 98.9 6.3E-09 1.4E-13 83.6 7.8 66 50-115 232-300 (303)
430 KOG0060|consensus 98.9 8.2E-09 1.8E-13 98.1 8.8 80 32-114 537-627 (659)
431 COG2401 ABC-type ATPase fused 98.8 1.1E-08 2.3E-13 94.7 8.1 82 34-115 485-569 (593)
432 cd01124 KaiC KaiC is a circadi 98.8 1.6E-08 3.4E-13 81.5 8.3 75 41-115 58-141 (187)
433 PRK14079 recF recombination pr 98.8 1.2E-08 2.5E-13 92.2 8.0 47 54-100 263-318 (349)
434 KOG0063|consensus 98.8 1E-08 2.3E-13 94.9 7.2 83 33-115 192-274 (592)
435 cd03284 ABC_MutS1 MutS1 homolo 98.8 1E-08 2.2E-13 86.7 5.5 59 54-114 85-153 (216)
436 PRK00409 recombination and DNA 98.8 1.4E-08 3E-13 100.5 7.0 67 48-115 384-451 (782)
437 cd03283 ABC_MutS-like MutS-lik 98.7 4E-08 8.7E-13 82.1 7.6 56 61-116 92-150 (199)
438 TIGR01069 mutS2 MutS2 family p 98.7 1.8E-08 3.9E-13 99.5 5.8 68 47-115 378-446 (771)
439 KOG0063|consensus 98.7 2.2E-08 4.7E-13 92.9 5.7 91 23-113 417-516 (592)
440 cd03281 ABC_MSH5_euk MutS5 hom 98.6 7.7E-08 1.7E-12 81.2 7.0 60 57-116 93-156 (213)
441 KOG0064|consensus 98.6 6.5E-08 1.4E-12 91.6 5.4 93 22-117 568-672 (728)
442 PF13558 SbcCD_C: Putative exo 98.5 1.5E-07 3.2E-12 69.4 5.6 52 48-99 26-90 (90)
443 PTZ00132 GTP-binding nuclear p 98.5 5.7E-07 1.2E-11 74.7 7.4 50 53-102 149-205 (215)
444 PRK13695 putative NTPase; Prov 98.4 8.8E-07 1.9E-11 71.6 6.7 82 49-178 73-156 (174)
445 PRK13830 conjugal transfer pro 98.3 8.1E-07 1.8E-11 88.4 5.4 77 70-180 650-727 (818)
446 TIGR02858 spore_III_AA stage I 98.2 5.7E-06 1.2E-10 72.6 8.0 87 60-185 182-268 (270)
447 cd03286 ABC_MSH6_euk MutS6 hom 98.1 1E-05 2.2E-10 68.8 6.6 57 59-115 96-154 (218)
448 PF13175 AAA_15: AAA ATPase do 98.0 2.2E-05 4.9E-10 70.2 7.3 66 49-114 336-412 (415)
449 cd01125 repA Hexameric Replica 97.9 1.2E-05 2.6E-10 68.4 4.9 82 30-114 55-159 (239)
450 cd01128 rho_factor Transcripti 97.9 4.5E-06 9.8E-11 72.4 2.1 75 54-176 129-212 (249)
451 cd03287 ABC_MSH3_euk MutS3 hom 97.9 4.4E-05 9.5E-10 65.1 7.3 57 59-115 97-155 (222)
452 TIGR03185 DNA_S_dndD DNA sulfu 97.8 6.4E-05 1.4E-09 73.0 7.1 61 51-115 548-615 (650)
453 PRK08533 flagellar accessory p 97.7 8.4E-05 1.8E-09 63.4 6.9 60 54-113 95-162 (230)
454 PRK06067 flagellar accessory p 97.7 0.00027 5.8E-09 59.7 9.3 62 54-115 100-166 (234)
455 PRK13891 conjugal transfer pro 97.6 0.00012 2.6E-09 73.4 6.1 53 65-117 680-733 (852)
456 COG3910 Predicted ATPase [Gene 97.5 0.00026 5.7E-09 59.9 5.8 66 49-115 124-189 (233)
457 cd01120 RecA-like_NTPases RecA 97.4 0.00092 2E-08 51.3 7.6 63 53-115 66-138 (165)
458 COG1196 Smc Chromosome segrega 97.4 0.00035 7.7E-09 72.1 6.7 64 51-115 1063-1130(1163)
459 KOG0964|consensus 97.4 9.7E-05 2.1E-09 73.9 2.3 62 52-114 1095-1160(1200)
460 COG4637 Predicted ATPase [Gene 97.3 0.00065 1.4E-08 61.3 6.9 61 54-115 270-332 (373)
461 PF13166 AAA_13: AAA domain 97.2 0.0016 3.5E-08 63.3 8.5 64 52-115 498-572 (712)
462 PRK07721 fliI flagellum-specif 97.1 0.0013 2.8E-08 61.6 7.1 86 53-183 222-340 (438)
463 TIGR02655 circ_KaiC circadian 96.9 8.2E-05 1.8E-09 70.0 -3.0 67 39-115 100-168 (484)
464 COG0497 RecN ATPase involved i 96.8 0.0054 1.2E-07 58.9 8.7 60 54-114 431-494 (557)
465 PRK13873 conjugal transfer ATP 96.8 0.0021 4.6E-08 64.1 5.8 48 69-116 632-680 (811)
466 TIGR02788 VirB11 P-type DNA tr 96.6 0.0017 3.7E-08 57.6 3.5 47 62-115 208-254 (308)
467 TIGR00152 dephospho-CoA kinase 96.5 0.0011 2.4E-08 54.2 1.3 83 57-141 60-143 (188)
468 KOG0962|consensus 96.5 0.0052 1.1E-07 63.6 6.3 61 53-113 1182-1253(1294)
469 PRK05399 DNA mismatch repair p 96.5 0.0091 2E-07 60.1 7.8 62 52-115 664-731 (854)
470 PRK13898 type IV secretion sys 96.4 0.0054 1.2E-07 61.1 6.0 49 68-116 638-687 (800)
471 KOG0933|consensus 96.3 0.0021 4.6E-08 64.8 2.3 60 51-111 1079-1142(1174)
472 PRK06793 fliI flagellum-specif 96.0 0.0073 1.6E-07 56.5 4.0 107 50-180 217-334 (432)
473 PRK08699 DNA polymerase III su 95.9 0.017 3.6E-07 52.0 6.0 63 76-139 116-181 (325)
474 COG1195 RecF Recombinational D 95.3 0.052 1.1E-06 49.8 6.6 56 54-113 275-339 (363)
475 COG4694 Uncharacterized protei 95.1 0.066 1.4E-06 51.7 7.1 65 49-113 523-596 (758)
476 cd01131 PilT Pilus retraction 95.0 0.063 1.4E-06 44.5 6.0 55 64-127 66-120 (198)
477 KOG0996|consensus 94.6 0.034 7.3E-07 57.2 3.7 53 49-101 1190-1246(1293)
478 smart00382 AAA ATPases associa 94.5 0.43 9.3E-06 34.5 8.8 63 51-113 57-125 (148)
479 KOG0018|consensus 94.4 0.043 9.3E-07 56.0 4.1 61 48-111 1045-1109(1141)
480 PF00488 MutS_V: MutS domain V 94.4 0.22 4.8E-06 42.7 8.0 62 54-115 102-167 (235)
481 PF13514 AAA_27: AAA domain 94.0 0.12 2.5E-06 53.5 6.4 63 51-113 1022-1092(1111)
482 TIGR03880 KaiC_arch_3 KaiC dom 93.9 0.14 3E-06 42.8 5.7 44 71-114 106-154 (224)
483 PF09818 ABC_ATPase: Predicted 93.8 0.19 4.2E-06 47.2 6.8 94 53-174 321-415 (448)
484 cd00561 CobA_CobO_BtuR ATP:cor 93.5 0.15 3.3E-06 41.5 5.1 65 60-125 81-149 (159)
485 TIGR01420 pilT_fam pilus retra 93.1 0.23 5E-06 44.8 6.1 54 63-125 186-239 (343)
486 PRK14088 dnaA chromosomal repl 93.0 0.24 5.2E-06 46.3 6.3 45 71-115 193-239 (440)
487 PRK00454 engB GTP-binding prot 93.0 0.35 7.7E-06 38.6 6.4 64 35-102 127-194 (196)
488 COG3044 Predicted ATPase of th 92.4 0.69 1.5E-05 43.6 8.2 98 49-176 315-412 (554)
489 TIGR01070 mutS1 DNA mismatch r 91.5 0.57 1.2E-05 47.4 7.2 61 55-115 652-716 (840)
490 PRK04863 mukB cell division pr 91.5 0.15 3.3E-06 54.4 3.2 56 52-111 1363-1435(1486)
491 TIGR03881 KaiC_arch_4 KaiC dom 90.8 0.4 8.7E-06 40.0 4.6 43 72-114 121-166 (229)
492 PRK13764 ATPase; Provisional 89.9 1.2 2.6E-05 43.5 7.6 81 68-183 320-402 (602)
493 TIGR02903 spore_lon_C ATP-depe 89.8 0.54 1.2E-05 45.9 5.1 49 34-99 243-291 (615)
494 COG4938 Uncharacterized conser 89.7 0.59 1.3E-05 42.2 4.8 50 63-113 251-301 (374)
495 PRK07414 cob(I)yrinic acid a,c 89.6 1.3 2.9E-05 36.8 6.6 55 60-115 101-159 (178)
496 PRK06893 DNA replication initi 89.4 0.78 1.7E-05 38.8 5.3 45 70-114 89-134 (229)
497 PRK05986 cob(I)alamin adenolsy 89.3 0.82 1.8E-05 38.4 5.2 65 60-125 101-169 (191)
498 PTZ00454 26S protease regulato 88.9 1.7 3.7E-05 40.3 7.5 52 64-115 230-295 (398)
499 cd00009 AAA The AAA+ (ATPases 88.1 1.3 2.9E-05 32.4 5.2 54 61-115 73-131 (151)
500 PRK04296 thymidine kinase; Pro 88.0 2.7 5.8E-05 34.5 7.4 42 70-115 76-117 (190)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-34 Score=240.52 Aligned_cols=134 Identities=24% Similarity=0.397 Sum_probs=120.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
.+.++||.++ +++.+||-|+.. .++++.++|+.+||.++++.++.+|||||||||+|||||+++|
T Consensus 78 ~vGmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 78 KVGMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred hcCeeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 3557788766 457799999763 3667889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+++|+|||||+|||....++++.+++|+++|.|.|++||++.
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-------------------------------------- 197 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-------------------------------------- 197 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH--------------------------------------
Confidence 999999999999999999999999999988888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++.+.+|||++|++|+++..|+|++++
T Consensus 198 -----FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 198 -----FAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred -----HHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 578899999999999999999998876
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=227.65 Aligned_cols=137 Identities=28% Similarity=0.444 Sum_probs=123.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
....|.+|-.+..+..++||.|...+ ++.++++|+.+|+.+++++++++|||||+|||.|||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 46789999777777888999997643 47899999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||+|+|+.++..++++|++++++|+||+++|||++
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~---------------------------------- 200 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG---------------------------------- 200 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH----------------------------------
Confidence 9999999999999999999999999999999988889998888875
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+..+||+|+.+++ ++++.|+++++..
T Consensus 201 ---------~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 201 ---------LVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred ---------HhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 37889999999875 6889999998874
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=234.24 Aligned_cols=132 Identities=29% Similarity=0.435 Sum_probs=115.0
Q ss_pred eEEEeeecccccCCCCHhHHH------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 9 IWCWQIISAQYSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
.+-||-|. +....||.++. +.++||.++|+.+||.++.++++.+|||||||||+|||||+.+|+||
T Consensus 86 GMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL 163 (339)
T COG1135 86 GMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL 163 (339)
T ss_pred cEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence 44555554 33557777765 34779999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|+|||||+|||.+.+.+++.|++++++ |.||+++||.|+
T Consensus 164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~---------------------------------------- 203 (339)
T COG1135 164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME---------------------------------------- 203 (339)
T ss_pred EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH----------------------------------------
Confidence 999999999999999999999999875 777777777653
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++|||+.||.+|+++..|+..+++
T Consensus 204 ---Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 204 ---VVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred ---HHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 588999999999999999999998876
No 4
>KOG0061|consensus
Probab=99.97 E-value=3.2e-31 Score=253.56 Aligned_cols=146 Identities=46% Similarity=0.831 Sum_probs=131.4
Q ss_pred cccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhcCCCE
Q psy8397 16 SAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCG-----RLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 16 ~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~-----~LSgGqrqrl~iA~aL~~~P~v 75 (203)
...+.+.+||+|.+. .+++|+++++.+||.+++|+.++ .+||||||||+||..|+++|+|
T Consensus 112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i 191 (613)
T KOG0061|consen 112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI 191 (613)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE
Confidence 444667899998652 46789999999999999999997 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.++..+.+.|++++++|+|||+|.|+|+
T Consensus 192 LflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs---------------------------------------- 231 (613)
T KOG0061|consen 192 LFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS---------------------------------------- 231 (613)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc----------------------------------------
Confidence 9999999999999999999999999976666666666654
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d 203 (203)
..+.+++|++++|.+|+++|.|+++++.++|.+.|++||.+.||+|
T Consensus 232 --s~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npad 277 (613)
T KOG0061|consen 232 --SELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPAD 277 (613)
T ss_pred --HHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHH
Confidence 5689999999999999999999999999999999999999999997
No 5
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.8e-30 Score=227.26 Aligned_cols=136 Identities=29% Similarity=0.461 Sum_probs=119.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..|.+|... +++.+|+.|+++. .++++++++.+||.+..++++++||+|||||++||+||+++|++
T Consensus 80 igy~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 80 IGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred eEEEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 556665433 6788999998754 35788999999999877999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
|||||||+||||.++..+++.|++++++| +||++|||+++
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~--------------------------------------- 198 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE--------------------------------------- 198 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH---------------------------------------
Confidence 99999999999999999999999999876 78899888875
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL 188 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 188 (203)
++..+||+|++|++|++++.|+++++...+
T Consensus 199 ----e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 199 ----EAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred ----HHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 367889999999999999999888865443
No 6
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=221.70 Aligned_cols=138 Identities=29% Similarity=0.405 Sum_probs=119.6
Q ss_pred CceeEEEeeecccccCCCCHhHHH-----------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDIL-----------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
....+.||.+..+++...-.+|+. +.++++.++++.+|+.+++++++.+|||||||||+||.+|+++|+
T Consensus 79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 346788888887776554444422 357789999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|+|||||+|||+.+++.+++.++++.++ |.|+|++||+++
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-------------------------------------- 200 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-------------------------------------- 200 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH--------------------------------------
Confidence 99999999999999999999999999976 577777777764
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+..+||++++|++|+++++|+|.+++.
T Consensus 201 -----~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 201 -----LVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred -----HHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 4788999999999999999999987764
No 7
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=4.4e-30 Score=247.39 Aligned_cols=152 Identities=34% Similarity=0.628 Sum_probs=131.0
Q ss_pred eeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccc-----cCCCCCHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHT-----LCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~-----~v~~LSgGqrqrl~iA~ 67 (203)
..+++|. ..+...+||.|++.. .++++++++.+||.+..++ .+++||||||||++||+
T Consensus 142 i~yv~Q~--~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 142 TGFVTQD--DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred eEEECcc--cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 4555553 234566899987632 2357889999999887765 45679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~------------------------------- 268 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS------------------------------- 268 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH-------------------------------
Confidence 9999999999999999999999999999999998778888888888752
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d 203 (203)
.+.+++|++++|++|++++.|+++++.++|+++|+.||.++||||
T Consensus 269 -----------~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpAD 313 (659)
T PLN03211 269 -----------RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313 (659)
T ss_pred -----------HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHH
Confidence 367899999999999999999999999999999999999999997
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.3e-29 Score=216.90 Aligned_cols=134 Identities=26% Similarity=0.411 Sum_probs=116.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
....+||. .+ ++..+||.||... ++.+..-|+.+||... .+.++++|||||++|++||||++.+
T Consensus 86 r~GvlFQ~-gA-LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 86 RMGVLFQQ-GA-LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred heeEEeec-cc-cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 35567763 43 5688999998642 4456677899999877 8999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|+++|+||||+||||.+...+-++|+++++. |.|++++|||++
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~------------------------------------ 207 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD------------------------------------ 207 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH------------------------------------
Confidence 9999999999999999999999999999976 778888888764
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++.+|+|++.|+++++.
T Consensus 208 -------s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 208 -------SLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred -------HHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 478899999999999999999999886
No 9
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=9.8e-30 Score=243.01 Aligned_cols=152 Identities=41% Similarity=0.749 Sum_probs=133.2
Q ss_pred eeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCC------CCCHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCG------RLSGGQKKRLSIA 66 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~------~LSgGqrqrl~iA 66 (203)
..+++|. ..+.+.+||.|++. ..++++++++.+||.+..|++++ .||||||||++||
T Consensus 101 i~yv~Q~--~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia 178 (617)
T TIGR00955 101 SAYVQQD--DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFA 178 (617)
T ss_pred ceeeccc--cccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHH
Confidence 3555653 23556789998763 23468999999999999999988 4999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|+++
T Consensus 179 ~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~------------------------------- 227 (617)
T TIGR00955 179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS------------------------------- 227 (617)
T ss_pred HHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-------------------------------
Confidence 9999999999999999999999999999999999876778888777764
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d 203 (203)
..+.++||++++|++|++++.|+++++.++|++.|+.||+..||||
T Consensus 228 -----------~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 273 (617)
T TIGR00955 228 -----------SELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273 (617)
T ss_pred -----------HHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 2478899999999999999999999999999999999999999986
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-30 Score=216.72 Aligned_cols=124 Identities=25% Similarity=0.435 Sum_probs=114.5
Q ss_pred ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
++.++|++|++. .++++.++.+.|+|.+++|+++++||.||||||+|||||+++|++++|||||+|||
T Consensus 86 lY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 86 LYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 568899999764 36788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
..+++.+.+.+++++.+|++||++||.++ ++..+||+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-------------------------------------------EvealCDr 202 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-------------------------------------------EVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-------------------------------------------HHHHhhhe
Confidence 99999999999999988888888888875 47889999
Q ss_pred EEEEeCCeEEeeCCcccch
Q psy8397 167 LYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~ 185 (203)
++++++|++++.|+++++.
T Consensus 203 vivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 203 VIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred EEEEecCcEEEcCCHHHHH
Confidence 9999999999999998764
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=1.5e-29 Score=219.39 Aligned_cols=125 Identities=29% Similarity=0.505 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEE
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~ 110 (203)
.+.+.++|+.+|+.+++++++.+||||||||+.|||||+++|++|||||||++||+..+.++++.+++++++ |.|||++
T Consensus 116 ~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~v 195 (258)
T COG1120 116 EEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV 195 (258)
T ss_pred HHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 447889999999999999999999999999999999999999999999999999999999999999999954 7777777
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh--HH
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP--YL 188 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~~ 188 (203)
+||++ .+.++||++++|++|++++.|+|++++. .+
T Consensus 196 lHDlN-------------------------------------------~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 196 LHDLN-------------------------------------------LAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred ecCHH-------------------------------------------HHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 77764 4789999999999999999999998873 34
Q ss_pred -HhcCCCCCCCC
Q psy8397 189 -QTIGLHCPQYH 199 (203)
Q Consensus 189 -~~~g~~~p~~~ 199 (203)
+-+|+.+....
T Consensus 233 ~~Vygv~~~~~~ 244 (258)
T COG1120 233 REVYGVDADVIE 244 (258)
T ss_pred HHHhCCceEEEE
Confidence 34677654333
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=3.5e-29 Score=221.04 Aligned_cols=135 Identities=31% Similarity=0.417 Sum_probs=118.0
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+++|.. .+++.+|+.|++.. .+++.++++.++|.+..++++++||||||||++||+||+++|
T Consensus 80 ~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 80 QRVGVVPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred hcEEEEeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 3467777653 35677899997642 245678899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.+++.+++.|++++++|.|||++||+++
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-------------------------------------- 199 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-------------------------------------- 199 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------------------------------------
Confidence 999999999999999999999999999877888888888874
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|++++.|+++++.
T Consensus 200 -----e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 200 -----EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred -----HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999998775
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=217.26 Aligned_cols=133 Identities=27% Similarity=0.425 Sum_probs=116.0
Q ss_pred eeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
..|.-|.. -+++.+||.++.. .+++++++++.+||.+ ++++++.+|||||+|||.+||||+.+|
T Consensus 77 IGYviQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 77 IGYVIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 34554433 3567789988763 4778999999999974 899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++||+|||+++|||.+|..+-+.++++.++ |+|||++|||++
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid------------------------------------- 197 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID------------------------------------- 197 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999999876 777777777765
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..++|||.+|++|+++..++|+++.
T Consensus 198 ------EA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 198 ------EALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred ------HHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 468999999999999999999999876
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.7e-29 Score=213.59 Aligned_cols=138 Identities=28% Similarity=0.410 Sum_probs=120.3
Q ss_pred CCceeEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
.+-..+.||.....++++.||++++. ..+++.++|+.+||. ..+++++.+|||||+||++|||||+.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 45567889988888889999999763 244589999999996 5789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++||||||||+||+..+..+++.+.+++++ +.|.|++|||+
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-------------------------------------- 202 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-------------------------------------- 202 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH--------------------------------------
Confidence 999999999999999999999999999864 56666666664
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
. .+..+|||++||++|+++..++..++.
T Consensus 203 ----~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 203 ----A-LVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred ----H-HHHHHhhheeeeeCCeEEEeechhhhh
Confidence 3 478899999999999999999888765
No 15
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-28 Score=215.64 Aligned_cols=147 Identities=21% Similarity=0.350 Sum_probs=121.1
Q ss_pred CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
....|.||....+++. .||.|++. ..+++.++++.+||. +..++++.+||||||||++||++|+.+
T Consensus 105 ~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 105 RRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred hceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 3467888865444443 58887653 245688999999996 689999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
|++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~------------------------------------- 226 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD------------------------------------- 226 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-------------------------------------
Confidence 9999999999999999999999999999877888888888864
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+.++||++++|++|++++.|+++++.. .+...++..|
T Consensus 227 ------~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 227 ------NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred ------HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 3678999999999999999999988652 3334454433
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.7e-28 Score=209.14 Aligned_cols=123 Identities=28% Similarity=0.494 Sum_probs=106.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKH-TLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~-~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+.||.+. +-+.+|+.|++. ..+++.++++.+||.+..+ ++|.+|||||||||+|||||+.+|
T Consensus 84 ~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 84 KIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred hEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 3567777554 468899999876 2557788999999997766 889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
+++|.||||.+||+.+.+.+++++++++++ |+|||++|||+
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~-------------------------------------- 203 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP-------------------------------------- 203 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--------------------------------------
Confidence 999999999999999999999999999865 77888888774
Q ss_pred ecCchhHHHhhcCEEEEEeCCeE
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i 175 (203)
.+..+|||++.+.+|++
T Consensus 204 ------~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 204 ------ELAKYADRVIELKDGKI 220 (226)
T ss_pred ------HHHHhCCEEEEEeCCee
Confidence 36789999999999984
No 17
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.9e-28 Score=215.40 Aligned_cols=133 Identities=27% Similarity=0.404 Sum_probs=115.5
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..|++|.. .++..+|+.|++.. .+++.++++.+||.+..++++++||||||||++||+||+++|++
T Consensus 68 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 68 IGIVPQYA--SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred cEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 55666642 35567899887642 23578899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.+++.+++.|++++++|.|||++||+++
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~---------------------------------------- 185 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME---------------------------------------- 185 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH----------------------------------------
Confidence 9999999999999999999999999877888888888864
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 186 ---~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 186 ---EADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred ---HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999988764
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=2.3e-28 Score=219.57 Aligned_cols=135 Identities=27% Similarity=0.384 Sum_probs=116.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.+. +++..||.|++.. .+++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus 82 ~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 82 RQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred cCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 35677777643 4566888886532 346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||++||+.++..+++.|++++++ |.|||++||+++
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~------------------------------------- 202 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD------------------------------------- 202 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999865 778888887764
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|++++++
T Consensus 203 ------~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 203 ------VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999987764
No 19
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=3.4e-28 Score=218.08 Aligned_cols=135 Identities=28% Similarity=0.391 Sum_probs=117.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+++|. ..++..+|+.|++.. .+++.++++.++|.+..++++++||||||||++||+||+++|
T Consensus 114 ~~ig~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 114 ARIGVVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred ccEEEEeCC--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 346677764 335567899987642 234668899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+||||.++..+++.|++++++|.|||++||+++
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-------------------------------------- 233 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-------------------------------------- 233 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------------------------------------
Confidence 999999999999999999999999999877888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|++++.|+++++.
T Consensus 234 -----e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 234 -----EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998764
No 20
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.6e-28 Score=210.85 Aligned_cols=147 Identities=24% Similarity=0.386 Sum_probs=120.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+.+|....+++. .|+.|++.. .+++.++++.+||. ...++++.+||||||||++||++|+.+|
T Consensus 85 ~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 85 KVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred hEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 456777754333433 477776532 34578889999996 5789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-------------------------------------- 205 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-------------------------------------- 205 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------------------------------------
Confidence 999999999999999999999999999866888888888863
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCPQ 197 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p~ 197 (203)
.+..+||++++|++|++++.|+++++.. .++..|+.+|.
T Consensus 206 -----~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 206 -----DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred -----HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 3678999999999999999999988753 45566776664
No 21
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=3.1e-28 Score=220.08 Aligned_cols=135 Identities=25% Similarity=0.388 Sum_probs=117.7
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....++||... +++.+||.+++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 79 r~ig~vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 79 RGLALLFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred CCEEEEECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35677887543 5577999997742 346889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG--GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 157 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~------------------------------------ 200 (362)
T TIGR03258 157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD------------------------------------ 200 (362)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH------------------------------------
Confidence 999999999999999999999999999865 678888888754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 201 -------ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 201 -------DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred -------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998774
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-28 Score=218.64 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=118.0
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....++||.. .+++.+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 76 r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 76 RDIAMVFQNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred CCEEEEeCCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4577888754 35567999997642 346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||++||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~------------------------------------- 196 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV------------------------------------- 196 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999998865 788888888764
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 197 ------ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 197 ------EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred ------HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 478899999999999999999998774
No 23
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.1e-28 Score=210.84 Aligned_cols=135 Identities=24% Similarity=0.324 Sum_probs=114.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...++||.....++ ..|+.+++.. .+++.++++.+||. ...++++.+||||||||++||+||+.+|
T Consensus 86 ~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 86 KVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 46788886543444 3588776531 34678899999997 6789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~------------------------------------- 207 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME------------------------------------- 207 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999764 778888887753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 208 ------~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 208 ------DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred ------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999988764
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=4.5e-28 Score=218.26 Aligned_cols=135 Identities=26% Similarity=0.409 Sum_probs=117.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....++||... +++.+||.|++.. .++++++++.+||.++.++++.+|||||||||+|||||+.+|
T Consensus 76 r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35678887543 4567999997742 357889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||++||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~------------------------------------- 196 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE------------------------------------- 196 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence 999999999999999999999999998865 778888888754
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 197 ------ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 197 ------EALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 468899999999999999999998765
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.4e-28 Score=217.71 Aligned_cols=135 Identities=22% Similarity=0.357 Sum_probs=117.7
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....++||... +++.+||.|++.. .+++.++++.+||.++.++++.+|||||||||+|||||+.+|
T Consensus 78 r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 78 RDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred CCEEEEeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45678887543 4567899987642 357788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+.+.|+++.++ |.|+|++||+++
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~------------------------------------- 198 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS------------------------------------- 198 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence 999999999999999999999999999765 788888888764
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 199 ------e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 199 ------EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998764
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.5e-28 Score=203.36 Aligned_cols=134 Identities=25% Similarity=0.374 Sum_probs=112.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...|.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++++|||||||||+||+||+.+|
T Consensus 78 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 78 RMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred ceEEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 455666643 34456788886532 235677899999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~------------------------------------- 198 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD------------------------------------- 198 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999999864 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 199 ------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 199 ------TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred ------HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 367899999999999999999887654
No 27
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=217.85 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=118.8
Q ss_pred CceeEEEeeecccccCCCCHhHHH------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+-+..+||.|. +.+..||.|+. ++++++.++|+.+||..+.++++.+|||||||||.|||||+.+|
T Consensus 106 ~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~ 183 (386)
T COG4175 106 KKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP 183 (386)
T ss_pred hhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCC
Confidence 34556777554 34557888765 35778999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
+|||+|||+|+|||--+.++.+-|.+|.++ .+|||++|||++|
T Consensus 184 ~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE------------------------------------ 227 (386)
T COG4175 184 DILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE------------------------------------ 227 (386)
T ss_pred CEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH------------------------------------
Confidence 999999999999999999999999999876 7888888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+.++.|||.+|++|+|+..|+|+++.
T Consensus 228 -------AlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 228 -------ALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred -------HHhccceEEEecCCeEEEeCCHHHHH
Confidence 68999999999999999999999886
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.8e-28 Score=207.50 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=94.4
Q ss_pred CCceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.....+.||... +.+..||.+|.. ..+++.++|+.+||..+.++++.+|||||||||+|||||+.+
T Consensus 71 ~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 71 GPDIGYVFQEDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred CCCEEEEeccCc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence 456678887544 568899999763 345799999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
|++|+||||+++||..++..+.+.+.++.++ ++||+++|||++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 9999999999999999999999999998754 677777777764
No 29
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=208.45 Aligned_cols=136 Identities=26% Similarity=0.395 Sum_probs=114.0
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~--~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
....+++|.....+ ...|+.|++.. .+++.++++.+||. +..++++.+||||||||++||+||+.
T Consensus 83 ~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 83 KKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 34567777643233 24688876532 24678899999997 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~----------------------------------- 206 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME----------------------------------- 206 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999864 788888888754
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 --------~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 207 --------DVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred --------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 366889999999999999999988764
No 30
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=1.2e-27 Score=201.74 Aligned_cols=133 Identities=25% Similarity=0.452 Sum_probs=113.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLS 64 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~ 64 (203)
+..|.+|.. .++..+|+.|++.. .+++.++++.+|+....++++.+||||||||++
T Consensus 76 ~i~~v~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 76 GIGRTFQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred CEEEEeccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence 456667653 34566788876431 235678899999998899999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhh
Q psy8397 65 IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR 144 (203)
Q Consensus 65 iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (203)
||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~----------------------------- 204 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD----------------------------- 204 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-----------------------------
Confidence 999999999999999999999999999999999999867888888888864
Q ss_pred CCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 145 ~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||+++++++|+++..|+++++
T Consensus 205 --------------~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 205 --------------VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred --------------HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 36788999999999999999988765
No 31
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.1e-27 Score=216.87 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=118.2
Q ss_pred CCceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.+...++||.+ .+++.+||.|++.. .+++.++++.+||....++++.+|||||||||+|||||+.+
T Consensus 70 r~~i~~v~Q~~--~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~ 147 (363)
T TIGR01186 70 RKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAE 147 (363)
T ss_pred hCcEEEEECCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 35678888753 35677899887532 35688899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+.+.+.++.++ |+|||++||+++
T Consensus 148 p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~------------------------------------ 191 (363)
T TIGR01186 148 PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD------------------------------------ 191 (363)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999754 778888888764
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 192 -------ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 192 -------EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred -------HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 367899999999999999999988764
No 32
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-27 Score=206.77 Aligned_cols=146 Identities=25% Similarity=0.309 Sum_probs=118.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.....+ ...|+.+++.. .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus 80 ~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 80 KVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3566776543233 34688776642 2457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~--------------------------------------- 199 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD--------------------------------------- 199 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999866888888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch--hHHHhcCCCCC
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI--PYLQTIGLHCP 196 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~--~~~~~~g~~~p 196 (203)
.+.++||++++|++|++++.|+++.+. ..++..++..|
T Consensus 200 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 200 ----LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred ----HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 367899999999999999999986542 23444555544
No 33
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=1.1e-27 Score=210.57 Aligned_cols=134 Identities=28% Similarity=0.388 Sum_probs=114.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .+++.+|+.|++.. .+++.++++.++|.+..++++++||||||||++||+||+.+|+
T Consensus 78 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 78 AIGVVPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred cEEEEeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 455666643 34566888887642 2346678999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~--------------------------------------- 196 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME--------------------------------------- 196 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH---------------------------------------
Confidence 99999999999999999999999999877888888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 197 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 197 ----EAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred ----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999988764
No 34
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=207.64 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=114.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+..+.+|.....++ .+|+.|++.. .+++.++++.+||. ...++++++||||||||++||+||+.+|
T Consensus 86 ~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 86 KVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred ceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 56677776432333 4688886532 34578899999997 6889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+.+.|+++.++|.|||++||+++
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-------------------------------------- 206 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-------------------------------------- 206 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 207 -----DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 467899999999999999999988654
No 35
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-27 Score=210.69 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=118.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+++|....+++. .|+.|++. ..+++.++++.+||. ...++++.+||||||||++|||||+.+|
T Consensus 117 ~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p 195 (320)
T PRK13631 117 RVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195 (320)
T ss_pred cEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356777765333433 47777542 234678899999997 6789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 196 ~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-------------------------------------- 237 (320)
T PRK13631 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-------------------------------------- 237 (320)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------------------------------------
Confidence 999999999999999999999999999866888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+..+||++++|++|+++..|+++++.. .++..++..|
T Consensus 238 -----~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 238 -----HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 3678999999999999999999987642 3444455444
No 36
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=1.5e-27 Score=213.17 Aligned_cols=137 Identities=26% Similarity=0.388 Sum_probs=116.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
....+.||.....+++.+|+.+++. ..+++.++++.+||. ...++++.+||||||||++||+||+
T Consensus 98 ~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~ 177 (331)
T PRK15079 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI 177 (331)
T ss_pred CceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3577888876444667788888642 134577899999995 5789999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||++
T Consensus 178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~---------------------------------- 223 (331)
T PRK15079 178 LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA---------------------------------- 223 (331)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 778888888763
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 224 ---------~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 224 ---------VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred ---------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999987764
No 37
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=1.3e-27 Score=245.57 Aligned_cols=153 Identities=34% Similarity=0.596 Sum_probs=131.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccCC----CCCHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIAL 67 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v~----~LSgGqrqrl~iA~ 67 (203)
.+.+++|.. .+...+||.|++.. .++++++++.+||.+.+|+.++ +||||||||++||+
T Consensus 837 ~i~yv~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 837 SIGYVQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred ceeeecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 345666542 24566899987642 2457899999999999999998 79999999999999
Q ss_pred HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 68 ELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 68 aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
+|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|+++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~------------------------------ 964 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA------------------------------ 964 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH------------------------------
Confidence 9999997 999999999999999999999999998778888888888753
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCC-eEEeeCCc----ccchhHHHhcCC-CCCCCCCCCC
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEG-HCVYKGSS----ANTIPYLQTIGL-HCPQYHNPAD 203 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G-~i~~~g~~----~~~~~~~~~~g~-~~p~~~~~~d 203 (203)
.+.+.||++++|++| ++++.|++ .++.+||+..|. .||+..||||
T Consensus 965 ------------~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd 1015 (1394)
T TIGR00956 965 ------------ILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015 (1394)
T ss_pred ------------HHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHH
Confidence 356789999999987 99999997 457899999996 9999999997
No 38
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5.3e-28 Score=216.62 Aligned_cols=137 Identities=22% Similarity=0.348 Sum_probs=123.0
Q ss_pred CCCceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 4 SNHGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
.+.+..++||... +++.|||.|++. ..++|.++.+.++|.+..++++.+|||||||||+|||||+.
T Consensus 73 ~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 73 EKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred hHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 3467888998644 457799999763 46789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|+++|||||+|+||...+..+...|+++.++ |.|+|++|||..
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~----------------------------------- 195 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV----------------------------------- 195 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-----------------------------------
Confidence 99999999999999999999999999999876 888888888853
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..++|||.+|++|++...|+|.++.
T Consensus 196 --------EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 196 --------EAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred --------HHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 478899999999999999999999886
No 39
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=211.98 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=113.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSI 65 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~i 65 (203)
...+.||.....+++.+++.+.+. ..+++.++++.+||.+ ..++++.+|||||||||+|
T Consensus 90 ~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~i 169 (330)
T PRK15093 90 NVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMI 169 (330)
T ss_pred CEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence 466788765544556677765432 1246788999999974 4589999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhh
Q psy8397 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR 144 (203)
Q Consensus 66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (203)
|+||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 170 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~----------------------------- 220 (330)
T PRK15093 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ----------------------------- 220 (330)
T ss_pred HHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-----------------------------
Confidence 99999999999999999999999999999999999864 778888888753
Q ss_pred CCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 145 ~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+|++.|+++++.
T Consensus 221 --------------~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 221 --------------MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred --------------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999987764
No 40
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=211.08 Aligned_cols=137 Identities=25% Similarity=0.394 Sum_probs=117.9
Q ss_pred CceeEEEeeecccccCCCCHhHHH--------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDIL--------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~a 68 (203)
+-..+.||.....+++-+++.+-+ +.++++.++|+.+||.+ ..+.++.+|||||||||.||.|
T Consensus 88 ~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAma 167 (316)
T COG0444 88 KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMA 167 (316)
T ss_pred ceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHH
Confidence 345677888887788878877632 12346888999999975 5699999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
|+.+|++||.||||++||...+.+++++|++++++ |.|+|++|||+.
T Consensus 168 la~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-------------------------------- 215 (316)
T COG0444 168 LALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-------------------------------- 215 (316)
T ss_pred HhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------
Confidence 99999999999999999999999999999999963 777777777753
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||||+||+.|+|++.|+.++++
T Consensus 216 -----------vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 216 -----------VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred -----------HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 478999999999999999999999886
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=214.15 Aligned_cols=135 Identities=24% Similarity=0.346 Sum_probs=116.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
....++||.. .+++.+|+.|++.. .+++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 74 r~i~~v~Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 74 RKVGFVFQHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CCEEEEecCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 3567788753 35566888887642 24678899999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~--------------------------------- 198 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE--------------------------------- 198 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---------------------------------
Confidence 9999999999999999999999999999999865 778888888764
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 199 ----------ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 199 ----------EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred ----------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 468899999999999999999988764
No 42
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-27 Score=211.48 Aligned_cols=136 Identities=25% Similarity=0.374 Sum_probs=115.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...+.||.....+++.+++.+++. .++++.++++.+||. ...++++.+||||||||++||+||+.+
T Consensus 93 ~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~ 172 (327)
T PRK11308 93 KIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLD 172 (327)
T ss_pred CEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcC
Confidence 467888876545667778876542 235688999999996 467999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++||+||||+|||+.++..+++.|++++++ |.|+|++||++.
T Consensus 173 P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~------------------------------------ 216 (327)
T PRK11308 173 PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS------------------------------------ 216 (327)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999864 777888777753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|++++++
T Consensus 217 -------~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 217 -------VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred -------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 367799999999999999999987765
No 43
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-27 Score=199.98 Aligned_cols=134 Identities=28% Similarity=0.431 Sum_probs=112.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA 66 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+++.+..++++.+||||||||++||
T Consensus 79 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH
Confidence 455666543 24456788876531 23567889999999889999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG 145 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (203)
+||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~------------------------------ 206 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD------------------------------ 206 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------
Confidence 9999999999999999999999999999999999754 788888888764
Q ss_pred CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 -------------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 207 -------------LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred -------------HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 367799999999999999999887753
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=2e-27 Score=215.85 Aligned_cols=135 Identities=25% Similarity=0.325 Sum_probs=117.6
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
.+..++||.. .+++.+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 86 r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 86 RHVNTVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred CCEEEEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4567788754 35677899997642 346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~------------------------------------- 206 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE------------------------------------- 206 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999864 788888888754
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..++|++++|++|+++..|+++++.
T Consensus 207 ------ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 207 ------EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999988764
No 45
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=204.06 Aligned_cols=136 Identities=25% Similarity=0.411 Sum_probs=119.7
Q ss_pred CCceeEEEeeecccccCCCCHhHHHhH------------------------HHHHHHHHHHcCCcccccccCCCCCHHHH
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILDT------------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQK 60 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqr 60 (203)
..|..+.||+.. .++.+||-|+... .+++.++|+.+||.+.++++.++||+|||
T Consensus 78 r~Gi~RTFQ~~r--lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 78 RLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred hccceeeccccc--ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 457899999764 5788999987532 34678899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHH
Q psy8397 61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAML 139 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (203)
||+.|||||+.+|++|+||||++||.+....++.+.|++++++ |.||+++.|+|.
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~------------------------ 211 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK------------------------ 211 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH------------------------
Confidence 9999999999999999999999999999999999999999963 466666666653
Q ss_pred HHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 140 KALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 140 ~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||||+||+.|+++++|+|+++.
T Consensus 212 -------------------~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 212 -------------------LVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred -------------------HHhhhccEEEeccCCcCcccCCHHHHh
Confidence 588999999999999999999999886
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.8e-27 Score=198.01 Aligned_cols=133 Identities=27% Similarity=0.437 Sum_probs=112.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.. .+.+.+|+.+++.. .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 74 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 355666643 34566788776532 2357889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-------------------------------------- 193 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-------------------------------------- 193 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999865 778888888754
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|.+|+++..|+++++
T Consensus 194 -----~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 194 -----EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred -----HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 36788999999999999998887653
No 47
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-27 Score=210.69 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=114.2
Q ss_pred ceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.||.....+++.+++.+.+ +..+++.++++.+||.+ ..++++.+|||||||||+||+||+
T Consensus 90 ~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~ 169 (326)
T PRK11022 90 EVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA 169 (326)
T ss_pred CEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 46778876654466667776432 12356789999999964 568999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++||+||||+|||+.++..+++.|++++++ |.|+|++||+++
T Consensus 170 ~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~---------------------------------- 215 (326)
T PRK11022 170 CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA---------------------------------- 215 (326)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999863 778888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+|++|++|++++.|++++++
T Consensus 216 ---------~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 216 ---------LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred ---------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 367899999999999999999988775
No 48
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.7e-27 Score=205.13 Aligned_cols=145 Identities=25% Similarity=0.341 Sum_probs=117.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|..... ....|+.|++.. .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus 82 ~i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 82 KIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hceEEEcChHHh-cccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 456777754322 345688876532 3467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-------------------------------------- 202 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-------------------------------------- 202 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999864 788888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+ ..||++++|++|+++..|+++++.. .++..|+..|
T Consensus 203 -----~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 203 -----EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred -----HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 24 4799999999999999999887652 3444455433
No 49
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-27 Score=204.85 Aligned_cols=146 Identities=28% Similarity=0.396 Sum_probs=118.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.....+ ...|+.|++.. .+++.++++.+||....++++.+||||||||++|||||+.+|+
T Consensus 83 ~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 83 SVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4567777543222 34678776532 3467888999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-------------------------------------- 203 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-------------------------------------- 203 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999865 778888888764
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+..+||++++|++|++++.|+++++.. .+...++..|
T Consensus 204 -----~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 204 -----IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 3667899999999999999999987653 2334455444
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.5e-27 Score=196.33 Aligned_cols=128 Identities=27% Similarity=0.400 Sum_probs=107.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 73 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 73 NIGMVFQDY--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred cEEEEcCch--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 355666543 24456788776532 2356789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------------------------- 192 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-------------------------------------- 192 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999763 788888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+.++||++++|++|++++.|
T Consensus 193 -----~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 193 -----EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred -----HHHHhcCEEEEEECCEEEecC
Confidence 367899999999999998765
No 51
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4e-27 Score=205.56 Aligned_cols=136 Identities=26% Similarity=0.352 Sum_probs=113.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
....++||.....++. .|+.|++. ..+++.++++.+||. +..++++.+||||||||++|||||+.+
T Consensus 85 ~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 85 KRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred hheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 3567888764333333 37776553 234678899999997 688999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++
T Consensus 164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~------------------------------------ 207 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN------------------------------------ 207 (286)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------------------------
Confidence 999999999999999999999999999975 3788888888754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 208 -------~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 208 -------EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred -------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 367889999999999999999988765
No 52
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-27 Score=214.03 Aligned_cols=134 Identities=23% Similarity=0.367 Sum_probs=115.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .+++.+|+.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 456777653 34567899887642 3467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-------------------------------------- 195 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-------------------------------------- 195 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999998764 778888888754
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 196 -----~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 196 -----EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999988764
No 53
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=4.4e-27 Score=242.18 Aligned_cols=153 Identities=37% Similarity=0.611 Sum_probs=130.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLC-----GRLSGGQKKRLSIA 66 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v-----~~LSgGqrqrl~iA 66 (203)
.+.|++|.. .+.+.+||.|.+.. .++++++++.+||.+..|+++ +.|||||||||+||
T Consensus 954 ~igyv~Q~d--~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa 1031 (1470)
T PLN03140 954 ISGYCEQND--IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031 (1470)
T ss_pred heEEEcccc--ccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHH
Confidence 356777642 34567899987642 234788999999999999987 48999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++.
T Consensus 1032 ~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~------------------------------ 1081 (1470)
T PLN03140 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI------------------------------ 1081 (1470)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH------------------------------
Confidence 99999999999999999999999999999999998778888888888752
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeC-CeEEeeCCc----ccchhHHHhc-CC-CCCCCCCCCC
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAE-GHCVYKGSS----ANTIPYLQTI-GL-HCPQYHNPAD 203 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~-G~i~~~g~~----~~~~~~~~~~-g~-~~p~~~~~~d 203 (203)
.+.+.||++++|++ |++++.|++ +++++||+.+ |. .||+..||||
T Consensus 1082 ------------~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd 1133 (1470)
T PLN03140 1082 ------------DIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133 (1470)
T ss_pred ------------HHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchh
Confidence 36788999999996 899999996 5788999997 55 5999999997
No 54
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=2.4e-27 Score=208.44 Aligned_cols=134 Identities=25% Similarity=0.399 Sum_probs=116.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|++|.. .++..+|+.|++.. .++++++++.+||.+..+++++.||||||||++||+||+++|+
T Consensus 76 ~ig~~~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 456666643 35677899997642 3467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.+++.+++.|+++++ +.|||++||+++
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~--------------------------------------- 193 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ--------------------------------------- 193 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH---------------------------------------
Confidence 9999999999999999999999999864 688888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
++.++||++++|++|++++.|+++++..
T Consensus 194 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 194 ----EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred ----HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 3788999999999999999999987643
No 55
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.8e-27 Score=199.70 Aligned_cols=134 Identities=23% Similarity=0.334 Sum_probs=112.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++||+||+
T Consensus 75 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 455666542 34456788876532 234678899999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.+++.+++.|++++++ |+|||++||+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~---------------------------------- 198 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE---------------------------------- 198 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 778888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 199 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 199 ---------EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred ---------HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 367889999999999999999887653
No 56
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=204.86 Aligned_cols=134 Identities=25% Similarity=0.418 Sum_probs=113.2
Q ss_pred eeEEEeeecccccCCCCHhHHHh--------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD--------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~ 67 (203)
+.+-||.+. +-+++||-++.. .+..+-++|+.+|+.+++.+++++|||||+|||+|||
T Consensus 83 iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 83 IGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred ceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 445565444 457788877652 3556788999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
||+++|+++|-|||+++|||.+.+.+++.|++++++ |.|||++.|++
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-------------------------------- 208 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-------------------------------- 208 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH--------------------------------
Confidence 999999999999999999999999999999999853 55555555554
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ .+.++|||++-|++|+|+++|++.++-.
T Consensus 209 ----------d-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 209 ----------D-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred ----------H-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 4 4789999999999999999999988753
No 57
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.5e-27 Score=211.39 Aligned_cols=134 Identities=29% Similarity=0.415 Sum_probs=114.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|... ++..+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+++|+
T Consensus 83 ~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 83 QIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred CEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4566676433 4566888887542 2467789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-------------------------------------- 202 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-------------------------------------- 202 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999764 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 203 -----~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 203 -----VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999887664
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=4.2e-27 Score=197.93 Aligned_cols=134 Identities=23% Similarity=0.418 Sum_probs=114.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 76 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 76 GIGYLPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred cEEEecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 456677643 34566788876532 2356788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~--------------------------------------- 194 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR--------------------------------------- 194 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999867788888888764
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 195 ----~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 195 ----ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred ----HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 367899999999999999999887654
No 59
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=3.8e-27 Score=196.50 Aligned_cols=124 Identities=23% Similarity=0.371 Sum_probs=105.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (216)
T TIGR00960 81 HIGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP 158 (216)
T ss_pred hceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 355666643 34556788887542 3467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~--------------------------------------- 199 (216)
T TIGR00960 159 LLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN--------------------------------------- 199 (216)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999766788888888764
Q ss_pred CchhHHHhhcCEEEEEeCCeE
Q psy8397 155 QPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i 175 (203)
.+..+||++++|++|++
T Consensus 200 ----~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 200 ----LVETYRHRTLTLSRGRL 216 (216)
T ss_pred ----HHHHhCCEEEEEeCCcC
Confidence 36778999999999974
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=4.1e-27 Score=196.32 Aligned_cols=128 Identities=25% Similarity=0.459 Sum_probs=109.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|++|.. .++..+|+.|++.. .+++.++++.+|+.+..++++++||||||||++|||||+.+|+
T Consensus 79 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 456667653 35566888887532 3467789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|+|||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------------------------------------- 197 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ--------------------------------------- 197 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999866888888888853
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||++++|++|++++.|
T Consensus 198 ----~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 198 ----EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred ----HHHHhcCEEEEEECCEEeecC
Confidence 367889999999999998654
No 61
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=1.9e-27 Score=244.22 Aligned_cols=152 Identities=28% Similarity=0.425 Sum_probs=129.2
Q ss_pred eeEEEeeecccccCCCCHhHHHhHH-------------------HH-HHHHHHHcCCcccccccC-----CCCCHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDTI-------------------GL-VDDILDTIGLVLSKHTLC-----GRLSGGQKKR 62 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-v~~~L~~~~L~~~~~~~v-----~~LSgGqrqr 62 (203)
..+++|. ..+.+.+||.|.+... ++ ++++++.+||.+.+++++ +.||||||||
T Consensus 140 i~yv~Q~--d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 140 VVYNAET--DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred eEEeccc--cccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence 4566653 2345668998876421 12 356799999998888776 5699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHH
Q psy8397 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA 141 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (203)
|+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|++.
T Consensus 218 vsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~-------------------------- 271 (1394)
T TIGR00956 218 VSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS-------------------------- 271 (1394)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------------------------
Confidence 99999999999999999999999999999999999999864 777777777764
Q ss_pred hhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397 142 LARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203 (203)
Q Consensus 142 ~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d 203 (203)
..+.+++|++++|++|++++.|+++++.+||+++|+.||+..||||
T Consensus 272 ----------------~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aD 317 (1394)
T TIGR00956 272 ----------------QDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317 (1394)
T ss_pred ----------------HHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 2578899999999999999999999999999999999999999987
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=3.5e-27 Score=216.03 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=115.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHh----------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD----------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .++..+|+.|++. ..++++++++.+|+.+..++++.+||||||||++|||||+
T Consensus 78 ~ig~v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 78 RVASVPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred ceEEEccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 455666543 3445678877652 2346889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
++|++|||||||+|||+.++.+++++|++++++|.|||++||+++
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~----------------------------------- 200 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD----------------------------------- 200 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-----------------------------------
Confidence 999999999999999999999999999999877888888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|++++++
T Consensus 201 --------~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 201 --------LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred --------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 467899999999999999999998764
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=3.9e-27 Score=199.37 Aligned_cols=133 Identities=24% Similarity=0.376 Sum_probs=111.5
Q ss_pred eeEEEeeecccccCCCCHhHHHh--------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD--------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~ 67 (203)
..+.+|.. .+++.+|+.+++. ..+++.++++.+|+....++++.+||||||||++||+
T Consensus 81 i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 81 IGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred eEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 45566542 2445578777652 1346788899999998899999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~------------------------------- 207 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD------------------------------- 207 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------
Confidence 999999999999999999999999999999998754 778888888764
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 208 ------------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 208 ------------LAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred ------------HHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 367899999999999999999887753
No 64
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.6e-27 Score=202.88 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=113.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .++..+|+.|++.. .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus 103 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 103 KISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 466777643 34556888887642 2457789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-------------------------------------- 222 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-------------------------------------- 222 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999998754 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 223 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 223 -----EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred -----HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887764
No 65
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.7e-27 Score=214.15 Aligned_cols=135 Identities=20% Similarity=0.316 Sum_probs=116.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....++||... +++.+||.|++.. .+++.++++.++|.+..++++.+|||||||||+|||||+.+|
T Consensus 91 r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 91 RPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35678887543 5677999998742 346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||++||+..+..+.+.|+++.++ |.|+|++||+++
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~------------------------------------- 211 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE------------------------------------- 211 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence 999999999999999999999999998754 777777777754
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 212 ------ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 212 ------EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred ------HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 467899999999999999999988764
No 66
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=5.1e-27 Score=208.83 Aligned_cols=134 Identities=24% Similarity=0.325 Sum_probs=114.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.||.. .++..+|+.+++.. .+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 43 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 43 HINMVFQSY--ALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred CEEEEecCc--cccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 456777653 34567899887642 2467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~-------------------------------------- 162 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-------------------------------------- 162 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999998764 778888888754
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 163 -----e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 163 -----EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 367899999999999999999988764
No 67
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.5e-27 Score=202.01 Aligned_cols=146 Identities=28% Similarity=0.399 Sum_probs=120.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.....++ ..|+.|++.. .+++.++++.+||.+..++++++|||||+||++|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 79 TVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred heEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 45677776432333 3588876532 2457789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+++|||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~--------------------------------------- 198 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD--------------------------------------- 198 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH---------------------------------------
Confidence 99999999999999999999999999866888888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+..+||++++|++|++++.|+++++.. .++..++..|
T Consensus 199 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 199 ----LVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred ----HHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 3677899999999999999999987653 3445555444
No 68
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=6.4e-27 Score=193.92 Aligned_cols=126 Identities=27% Similarity=0.396 Sum_probs=105.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL 78 (203)
...|.+|.....+ ...|+.|++.. .+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||
T Consensus 72 ~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 150 (205)
T cd03226 72 SIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150 (205)
T ss_pred ceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3556666532222 34688887642 23678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
||||+|||+.+++.+++.|++++++|.|||++||+++
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~------------------------------------------- 187 (205)
T cd03226 151 DEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE------------------------------------------- 187 (205)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------
Confidence 9999999999999999999999867888888888864
Q ss_pred HHHhhcCEEEEEeCCeEE
Q psy8397 159 TIFEMVDHLYVIAEGHCV 176 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i~ 176 (203)
.+..+||++++|++|+++
T Consensus 188 ~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 188 FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCEEEEEECCEEC
Confidence 367789999999999874
No 69
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=2.3e-27 Score=222.46 Aligned_cols=137 Identities=28% Similarity=0.411 Sum_probs=120.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
......||.+...+++++||.+++. .++++.++++.+||.. ..++++.+||||||||++|||||+.
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL 446 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc
Confidence 3456677877777899999999653 2457899999999986 7999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|++||||+.||+..+..+.+.|++++++ |.|.|++|||+.
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~----------------------------------- 491 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA----------------------------------- 491 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999975 777777777753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||||.||++|+|+..|+.++++
T Consensus 492 --------vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 492 --------VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred --------HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 588999999999999999999887776
No 70
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.5e-27 Score=202.09 Aligned_cols=134 Identities=28% Similarity=0.340 Sum_probs=112.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.....+ ...|+.+++.. .+++.++++.+||....++++.+||||||||++||+||+.+|+
T Consensus 78 ~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 78 LVGIVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred heEEEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4566776543223 34677776532 3457888999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~--------------------------------------- 197 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE--------------------------------------- 197 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH---------------------------------------
Confidence 99999999999999999999999999867888888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||+++++++|++++.|+++++.
T Consensus 198 ----~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 198 ----EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred ----HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 24 469999999999999999987764
No 71
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=7.2e-27 Score=208.61 Aligned_cols=137 Identities=22% Similarity=0.335 Sum_probs=114.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
....+.||.....+++.+++.+.+. ..+++.++++.+||.+ ..++++.+|||||+||++||+||
T Consensus 97 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL 176 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 176 (330)
T ss_pred CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 3577888876545667788766431 1346788899999964 34789999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+.
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~--------------------------------- 223 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG--------------------------------- 223 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH---------------------------------
Confidence 9999999999999999999999999999999864 778888887763
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 224 ----------~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 224 ----------VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred ----------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 367799999999999999999988775
No 72
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.3e-27 Score=210.88 Aligned_cols=135 Identities=24% Similarity=0.372 Sum_probs=116.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
....++||.. .+++.+|+.+++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|++||||
T Consensus 76 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 76 RRIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CCEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3566777653 34566899987642 356889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
|||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~------------------------------------------- 190 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD------------------------------------------- 190 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-------------------------------------------
Confidence 999999999999999999999865 778888888753
Q ss_pred HHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 159 TIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 191 ~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 191 EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 467899999999999999999888764
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.6e-27 Score=194.79 Aligned_cols=131 Identities=23% Similarity=0.333 Sum_probs=108.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++++||||||||++||+||+.+|+
T Consensus 74 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 74 DRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 345666543 24455788876532 2457789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++||||||+|||+.++..+++.|+++.+ .|.|||++||+++
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-------------------------------------- 193 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-------------------------------------- 193 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH--------------------------------------
Confidence 9999999999999999999999999864 4778888888753
Q ss_pred cCchhHHHhhcCEEEEEe--CCeEEeeCCcc
Q psy8397 154 HQPSATIFEMVDHLYVIA--EGHCVYKGSSA 182 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~--~G~i~~~g~~~ 182 (203)
.+..+||++++|+ +|+++..++.+
T Consensus 194 -----~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 194 -----EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred -----HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 3678999999999 79999887653
No 74
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=208.83 Aligned_cols=135 Identities=24% Similarity=0.364 Sum_probs=119.1
Q ss_pred CceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
....+.||-.. ++..|||.++.. .+.++.++|+.+.|+...++++.+|||||||||++||||+.
T Consensus 77 R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 77 RKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred cceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 45678887644 456699998763 46789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++||||||+++||...++++..-|+++..+ |.|+|++|||++
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e----------------------------------- 199 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE----------------------------------- 199 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999998865 777777777753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++.++||||++|++|+|...|+|+++.
T Consensus 200 --------ea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 200 --------EALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred --------HHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 478999999999999999999999874
No 75
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=215.66 Aligned_cols=135 Identities=26% Similarity=0.400 Sum_probs=118.8
Q ss_pred CceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
..+.++||... +++.+||.|+. +.+++|.++|+.++|.++.++++.+|||||||||+|||||+.+
T Consensus 77 R~ig~VFQ~YA--LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYA--LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcc--cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 44567776533 46779999984 2456899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++||||||.++||.+-|..+..-++++.++ |.|.|++|||.+
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe------------------------------------ 198 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE------------------------------------ 198 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH------------------------------------
Confidence 9999999999999999999999999998865 888888888754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..++|||.+|++|+|...|+|+++-
T Consensus 199 -------EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 199 -------EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred -------HHhhhccceEEccCCceeecCCHHHHh
Confidence 468899999999999999999999874
No 76
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=221.46 Aligned_cols=139 Identities=24% Similarity=0.412 Sum_probs=120.0
Q ss_pred CCceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccc--cCCCCCHHHHHHHHHHHHH
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHT--LCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~--~v~~LSgGqrqrl~iA~aL 69 (203)
.+-+.+.||.....|++-+++.+-+ +.++++.++|+.+||.+...+ ++.+|||||||||.||+||
T Consensus 90 g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmAL 169 (539)
T COG1123 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169 (539)
T ss_pred cccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHH
Confidence 3556788898888888878887633 246678899999999876655 9999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
+.+|++||+||||++||+..+.++++.|+++.++ |.++|++||||.
T Consensus 170 a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~--------------------------------- 216 (539)
T COG1123 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG--------------------------------- 216 (539)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH---------------------------------
Confidence 9999999999999999999999999999999853 667777777653
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+.++||||+||++|++++.|++++++.
T Consensus 217 ----------Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 217 ----------VVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred ----------HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 5789999999999999999999999873
No 77
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=9.1e-27 Score=198.16 Aligned_cols=134 Identities=25% Similarity=0.381 Sum_probs=112.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+..+.+|.. .++...|+.|++.. .+++.++++.+|+....++++++||||||||++||+||+.+|
T Consensus 86 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 86 HVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 455666543 34456788776531 235678899999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-------------------------------------- 205 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-------------------------------------- 205 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866788888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 206 -----~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 206 -----FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred -----HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 367889999999999999999887653
No 78
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=7e-27 Score=210.11 Aligned_cols=135 Identities=24% Similarity=0.396 Sum_probs=115.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
....+.+|.. .++..+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus 75 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 75 RRIGYVFQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred CCeEEEecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3456777653 34566899887642 23578899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~--------------------------------------- 193 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ--------------------------------------- 193 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH---------------------------------------
Confidence 9999999999999999999999999865 778888888764
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 194 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 194 ----EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred ----HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 367889999999999999999887664
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=7.2e-27 Score=193.78 Aligned_cols=128 Identities=28% Similarity=0.421 Sum_probs=108.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL 78 (203)
...+++|.. .++..+|+.|++.. .+++.++++.+++.+..++++++||||||||++||+||+.+|+++||
T Consensus 73 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 73 RIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred hEEEecCCC--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 345666542 34556899887632 34678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
||||+|||+.+++.+++.|++++++|.|+|++||+++
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~------------------------------------------- 187 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS------------------------------------------- 187 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------
Confidence 9999999999999999999999867788888888853
Q ss_pred HHHhhcCEEEEEeCCeEEeeC
Q psy8397 159 TIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||++++|++|++++.|
T Consensus 188 ~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 188 EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 367789999999999998765
No 80
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.4e-27 Score=196.47 Aligned_cols=133 Identities=28% Similarity=0.405 Sum_probs=112.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+.+.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 83 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 83 RIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred heEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 456666543 34456888886532 2356788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++||||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-------------------------------------- 202 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-------------------------------------- 202 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999764 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|++++.|+++++
T Consensus 203 -----~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 203 -----VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred -----HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 36789999999999999999987654
No 81
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-26 Score=202.02 Aligned_cols=135 Identities=29% Similarity=0.407 Sum_probs=113.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.....++ ..|+.+++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 79 FVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred heEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 35666665432233 4677776532 2357889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.++++.++ |.|||++||+++
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-------------------------------------- 199 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-------------------------------------- 199 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999865 788888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.+.||++++|++|++++.|++++++
T Consensus 200 -----~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 200 -----LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred -----HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 367899999999999999999998775
No 82
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=1.2e-26 Score=194.80 Aligned_cols=131 Identities=26% Similarity=0.285 Sum_probs=109.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccccccc--CCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTL--CGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~--v~~LSgGqrqrl~iA~aL~~ 71 (203)
...|.+|... ++ .+|+.|++.. .+++.++++.+|+.+..+++ +.+||||||||++||+||+.
T Consensus 82 ~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 82 RVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 3556666432 34 5788886532 24577889999998877777 59999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++.++ .|||++||+++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~------------------------------------ 201 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ------------------------------------ 201 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH------------------------------------
Confidence 99999999999999999999999999999866 78888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|.+|++++.|+++++
T Consensus 202 -------~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 202 -------QAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred -------HHHHhCCEEEEEeCCEEEEecCcccC
Confidence 36789999999999999999988753
No 83
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1.3e-26 Score=192.83 Aligned_cols=103 Identities=31% Similarity=0.577 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||
T Consensus 111 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH 190 (213)
T cd03235 111 AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190 (213)
T ss_pred HHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46788999999998899999999999999999999999999999999999999999999999999999867788888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
+++ .+.++||++++|++| +++.|
T Consensus 191 ~~~-------------------------------------------~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 191 DLG-------------------------------------------LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CHH-------------------------------------------HHHHhcCEEEEEcCc-EeecC
Confidence 864 367889999999886 55544
No 84
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=1.9e-26 Score=198.82 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=113.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...|.+|.....+...+|+.|++. ..+++.++++.+|+. ...++++.+||||||||++|||||+.+
T Consensus 89 ~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~ 168 (265)
T TIGR02769 89 DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVK 168 (265)
T ss_pred ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 466777654323455678877541 134678899999996 678999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 169 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~------------------------------------ 212 (265)
T TIGR02769 169 PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR------------------------------------ 212 (265)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999864 778888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 213 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 213 -------LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred -------HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 367799999999999999999988775
No 85
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=195.70 Aligned_cols=135 Identities=21% Similarity=0.350 Sum_probs=113.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
.+..+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++||+|++.+|
T Consensus 71 ~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 71 RPVSMLFQEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred ccEEEEeccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3456667643 34556788876531 235788999999998999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
+++||||||+|||+.+++.+++.|+++.++ |.|||++||+++
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~------------------------------------- 191 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE------------------------------------- 191 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-------------------------------------
Confidence 999999999999999999999999998754 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||+++++.+|++++.|+++++.
T Consensus 192 ------~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 192 ------DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred ------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887665
No 86
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.5e-27 Score=196.85 Aligned_cols=131 Identities=25% Similarity=0.459 Sum_probs=114.5
Q ss_pred EEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 10 WCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
++||-++. ++ .+|+-|+. +..++++.+|..+|+.+..+.++..|||||+||++|||||+++|+++
T Consensus 97 mVFQ~FNL-Ws-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 97 MVFQHFNL-WS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred Hhhhhcch-hH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence 45555552 43 37777754 24667889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
++||||++|||.-..++++.++.|+++|+|.+++||.+.
T Consensus 175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~----------------------------------------- 213 (256)
T COG4598 175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG----------------------------------------- 213 (256)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-----------------------------------------
Confidence 999999999999999999999999988888888888764
Q ss_pred hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 157 SATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++...+.+++++.+|.|-.+|+|++++
T Consensus 214 --FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 214 --FARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred --HHHhhhhheEEeecceecccCChHHHh
Confidence 467889999999999999999999886
No 87
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.4e-26 Score=196.15 Aligned_cols=133 Identities=28% Similarity=0.446 Sum_probs=112.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA 66 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++++|||||+||++||
T Consensus 78 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 78 GIGRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred CeeEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 456666543 34566788876532 34678899999999889999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
|||+.+|++|+|||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~------------------------------- 203 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME------------------------------- 203 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-------------------------------
Confidence 999999999999999999999999999999999875 678888888754
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++++|++++.|+++++.
T Consensus 204 ------------~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 204 ------------FVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred ------------HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 367899999999999999999887764
No 88
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.2e-26 Score=211.20 Aligned_cols=135 Identities=21% Similarity=0.354 Sum_probs=117.3
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+...+.||.+. +++.+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 106 ~~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 106 HRVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CCEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 46778887543 4567899887642 346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|.++.++ |+|||++||+++
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~------------------------------------- 226 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD------------------------------------- 226 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999864 778888888764
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++.++||++++|++|+++..|+++++.
T Consensus 227 ------e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 227 ------EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 467899999999999999999998764
No 89
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=1.3e-26 Score=196.13 Aligned_cols=131 Identities=21% Similarity=0.330 Sum_probs=108.9
Q ss_pred eEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
.+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++++||||||||++||++|+.+|+
T Consensus 57 ~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 134 (230)
T TIGR01184 57 MVVFQNY--SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK 134 (230)
T ss_pred eEEecCc--ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3455432 34456788876532 2246788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.+++.+++.|+++.++ |.|||++||+++
T Consensus 135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------------------------- 176 (230)
T TIGR01184 135 VLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-------------------------------------- 176 (230)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999998764 777888877753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|+++..|++.++
T Consensus 177 -----~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 177 -----EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred -----HHHHhcCEEEEEeCCcEecccCceec
Confidence 36789999999999999998876554
No 90
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=197.89 Aligned_cols=110 Identities=25% Similarity=0.472 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEe
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~t 111 (203)
+++.++++.+|+.+..++++++||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|
T Consensus 132 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 132 DRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred HHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 35677899999998999999999999999999999999999999999999999999999999999999865 78888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
|+++ .+.++||+++++++|++++.|+++++.
T Consensus 212 H~~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 212 HDMK-------------------------------------------LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CCHH-------------------------------------------HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 8753 367899999999999999999987654
No 91
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.1e-27 Score=197.55 Aligned_cols=137 Identities=25% Similarity=0.413 Sum_probs=119.6
Q ss_pred CCceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..|..|.+|..| .+..+||+|++.. +.+++++|+.|++.+.++++..+||||||+|+.|||||+
T Consensus 78 rlGigYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 78 RLGIGYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred hcCcccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 356777777665 4688999997631 335779999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++++||||++|+||.+...+.++++.|+..|..|++|-|+..
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR----------------------------------- 200 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR----------------------------------- 200 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-----------------------------------
Confidence 999999999999999999999999999999977777777777743
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+...+|||.+++.+|+++++|+|+++..
T Consensus 201 --------EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 201 --------ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred --------HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 3578999999999999999999998863
No 92
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=1.5e-26 Score=199.95 Aligned_cols=134 Identities=24% Similarity=0.331 Sum_probs=112.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+.+|.. .++..+|+.|++.. ..++.++++.+|+.+..++++++||||||||++||+||+.+|
T Consensus 85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 355666643 34566788886532 124667899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~------------------------------------- 205 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP------------------------------------- 205 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999999764 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 206 ------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 206 ------EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred ------HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 467889999999999999999887654
No 93
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-26 Score=211.83 Aligned_cols=134 Identities=25% Similarity=0.313 Sum_probs=115.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .+++.+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 107 ~igyv~Q~~--~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 107 KIAMVFQSF--ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred CEEEEECCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 567777753 35567899887642 2467789999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.+ .|+|||++||+++
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-------------------------------------- 226 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-------------------------------------- 226 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH--------------------------------------
Confidence 9999999999999999999999999975 4778888888754
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++.++||++++|++|+++..|+++++.
T Consensus 227 -----~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 227 -----EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred -----HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 367899999999999999999887764
No 94
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=1.7e-26 Score=194.96 Aligned_cols=136 Identities=24% Similarity=0.358 Sum_probs=111.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc---ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV---LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~---~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|.....+...+|+.++.. ..+++.++++.+++. +..++++++|||||||||+|||||+.
T Consensus 63 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~ 142 (230)
T TIGR02770 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL 142 (230)
T ss_pred eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc
Confidence 455666654322444567655421 134578899999997 56799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 143 ~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~----------------------------------- 187 (230)
T TIGR02770 143 EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG----------------------------------- 187 (230)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999764 778888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 188 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 188 --------VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred --------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 467899999999999999999987764
No 95
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1.9e-26 Score=191.64 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=107.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++...|+.+++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 73 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 73 DIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred eEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 455666543 24456788776532 3356788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-------------------------------------- 192 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-------------------------------------- 192 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999864 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||+++++.+|++++.|
T Consensus 193 -----~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 193 -----EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred -----HHHHhcCeEEEEECCEEEecC
Confidence 367889999999999998765
No 96
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=2.4e-26 Score=193.55 Aligned_cols=109 Identities=29% Similarity=0.500 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+++.++++.+++.+..++++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++|.|+|++||
T Consensus 92 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH 171 (223)
T TIGR03771 92 AAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171 (223)
T ss_pred HHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45788999999998899999999999999999999999999999999999999999999999999999866888888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+++ .+.++||+++++ +|++++.|+++++.
T Consensus 172 ~~~-------------------------------------------~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 172 DLA-------------------------------------------QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred CHH-------------------------------------------HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 853 367899999999 89999999988764
No 97
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-26 Score=197.55 Aligned_cols=134 Identities=26% Similarity=0.401 Sum_probs=112.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .+++.+|+.|+... .+++.++++.+|+.+..++++.+|||||+||++||+||+
T Consensus 77 ~i~~~~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 77 RLALLPQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred heEEecccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 355666543 24455677776432 235778899999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~----------------------------------- 199 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN----------------------------------- 199 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-----------------------------------
Confidence 999999999999999999999999999999866788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||+++++++|+++..|+++++.
T Consensus 200 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 200 --------QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred --------HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 467899999999999999999887764
No 98
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=199.68 Aligned_cols=134 Identities=28% Similarity=0.366 Sum_probs=111.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...++||....++. ..++.+++. ..+++.++++.+||.+..++++++||||||||++||++|+.+|+
T Consensus 86 ~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 164 (280)
T PRK13633 86 KAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE 164 (280)
T ss_pred heEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 45667765432232 346665442 13567889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-------------------------------------- 206 (280)
T PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-------------------------------------- 206 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH--------------------------------------
Confidence 99999999999999999999999999764 888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.. ||++++|++|++++.|+++++.
T Consensus 207 -----~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 207 -----EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred -----HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 2444 9999999999999999988765
No 99
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=196.20 Aligned_cols=133 Identities=26% Similarity=0.429 Sum_probs=111.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+++.. ..++++.+||||||||++|||||+.+
T Consensus 76 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 76 KIGYVIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred ceEEEccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 455666542 34556788877532 235778999999986 78999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~------------------------------------ 197 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID------------------------------------ 197 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------------------------
Confidence 9999999999999999999999999999864 788888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|++++.|+++++
T Consensus 198 -------~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 198 -------EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred -------HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 36789999999999999999987765
No 100
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=1.9e-26 Score=195.36 Aligned_cols=134 Identities=25% Similarity=0.358 Sum_probs=112.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|
T Consensus 78 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 78 EAGMVFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred ceEEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 456666543 34456788776532 235678999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++++|||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-------------------------------------- 197 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-------------------------------------- 197 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866888888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 198 -----~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 198 -----FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred -----HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 367889999999999999999887653
No 101
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.2e-26 Score=197.90 Aligned_cols=135 Identities=28% Similarity=0.372 Sum_probs=110.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...|.+|.....++. .|+.+++.. .+++.++++.+||. ...++++.+||||||||++||+||+.+|
T Consensus 86 ~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (280)
T PRK13649 86 KVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEP 164 (280)
T ss_pred heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356667653222333 577776532 23467788999997 4679999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.+++.+++.|++++++|.|||++||+++
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-------------------------------------- 206 (280)
T PRK13649 165 KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-------------------------------------- 206 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH--------------------------------------
Confidence 999999999999999999999999999866788888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 -----~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 207 -----DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 367889999999999999999887764
No 102
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=1.9e-26 Score=192.57 Aligned_cols=133 Identities=25% Similarity=0.429 Sum_probs=110.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
...|.+|.. .++..+|+.+++.. .+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++
T Consensus 76 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 76 GIGYVPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred CeEEecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 456667643 34566788876532 23456778888 578888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~---------------------------------------- 193 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR---------------------------------------- 193 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH----------------------------------------
Confidence 9999999999999999999999999867788888888853
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|+++..|+++++
T Consensus 194 ---~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 194 ---FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred ---HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 36789999999999999999887654
No 103
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-26 Score=199.26 Aligned_cols=121 Identities=30% Similarity=0.510 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+++.++++.+|+.+..++++.+||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||
T Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 194 (271)
T PRK13638 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSH 194 (271)
T ss_pred HHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45678899999998899999999999999999999999999999999999999999999999999999866788888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHH
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQ 189 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~ 189 (203)
+++ .+..+||++++|.+|++++.|+++++.. .++
T Consensus 195 ~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 231 (271)
T PRK13638 195 DID-------------------------------------------LIYEISDAVYVLRQGQILTHGAPGEVFACTEAME 231 (271)
T ss_pred CHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCHHHHhcChhHHH
Confidence 864 3678899999999999999999877642 334
Q ss_pred hcCCCCC
Q psy8397 190 TIGLHCP 196 (203)
Q Consensus 190 ~~g~~~p 196 (203)
..|...|
T Consensus 232 ~~~~~~~ 238 (271)
T PRK13638 232 QAGLTQP 238 (271)
T ss_pred hcCCCCC
Confidence 4454433
No 104
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.1e-26 Score=190.34 Aligned_cols=128 Identities=22% Similarity=0.383 Sum_probs=107.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++. ..+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 71 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 71 PVSMLFQEN--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred cEEEEeccc--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 456677653 3455678888653 13367889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------------------------- 190 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-------------------------------------- 190 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999754 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+.++||++++|++|+++..|
T Consensus 191 -----~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 191 -----DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred -----HHHhhhCEEEEEECCEEeecC
Confidence 367889999999999988654
No 105
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=6e-27 Score=241.18 Aligned_cols=127 Identities=31% Similarity=0.619 Sum_probs=114.7
Q ss_pred HHHHHHHcCCcccccc-----cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEE
Q psy8397 35 VDDILDTIGLVLSKHT-----LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIV 108 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~-----~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi 108 (203)
++++++.+||.+++|+ .++.|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|+|
T Consensus 312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi 391 (1470)
T PLN03140 312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL 391 (1470)
T ss_pred HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3568899999887754 5578999999999999999999999999999999999999999999999986 377777
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL 188 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 188 (203)
+++|++. .++.++||+|++|++|++++.|+++++.+||
T Consensus 392 is~Hqp~------------------------------------------~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF 429 (1470)
T PLN03140 392 MSLLQPA------------------------------------------PETFDLFDDIILLSEGQIVYQGPRDHILEFF 429 (1470)
T ss_pred EEecCCC------------------------------------------HHHHHHhheEEEeeCceEEEeCCHHHHHHHH
Confidence 7777764 2478899999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCC
Q psy8397 189 QTIGLHCPQYHNPAD 203 (203)
Q Consensus 189 ~~~g~~~p~~~~~~d 203 (203)
+++|+.||+..||||
T Consensus 430 ~~lGf~cP~~~n~AD 444 (1470)
T PLN03140 430 ESCGFKCPERKGTAD 444 (1470)
T ss_pred HHcCCCCCCCCChHH
Confidence 999999999999997
No 106
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.6e-26 Score=190.66 Aligned_cols=128 Identities=23% Similarity=0.379 Sum_probs=107.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+|+....++++.+||||||||++||+||+.+|+
T Consensus 71 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 71 RIGYLPEER--GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred cEEEeccCC--cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 345556543 34456788886532 3457789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+++|||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~--------------------------------------- 189 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME--------------------------------------- 189 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH---------------------------------------
Confidence 99999999999999999999999998866788888888753
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+.++||++++|++|++++.|
T Consensus 190 ----~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 190 ----LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred ----HHHHhhhEEEEEeCCEEEecC
Confidence 367889999999999998654
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.3e-26 Score=190.85 Aligned_cols=128 Identities=27% Similarity=0.382 Sum_probs=107.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+....++++.+||||||||++||+||+.+|+++
T Consensus 76 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 76 KIGLVFQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cEEEEecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 455666543 34556788876532 235778999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|||||+|||+.+++.+++.|++++++ |.|||++||+++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~---------------------------------------- 193 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS---------------------------------------- 193 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH----------------------------------------
Confidence 999999999999999999999999764 778888887753
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||++++|++|++++.|
T Consensus 194 ---~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 194 ---EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred ---HHHHhcCEEEEEECCEEEecC
Confidence 367889999999999998765
No 108
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=3.7e-26 Score=195.80 Aligned_cols=134 Identities=22% Similarity=0.340 Sum_probs=112.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSK-HTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~-~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...|.+|.. .+...+|+.|++.. .+++.++++.+|+.... ++++.+||||||||++|||||+.+
T Consensus 93 ~i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (257)
T PRK10619 93 RLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170 (257)
T ss_pred ceEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 456666543 24455788887532 24577899999998764 889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
|++|||||||+|||+.+++.+++.|++++++|.|||++||+++
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~------------------------------------- 213 (257)
T PRK10619 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG------------------------------------- 213 (257)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 9999999999999999999999999999867888888888853
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++++|++++.|+++++.
T Consensus 214 ------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 ------FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred ------HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 367789999999999999999887654
No 109
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=195.03 Aligned_cols=134 Identities=22% Similarity=0.352 Sum_probs=111.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
+..+.+|.. .++..+|+.+++.. .+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++
T Consensus 81 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 81 AVAIVPEGR--RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred CEEEeccCc--ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 455666543 24456788876532 23456677877 577778889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~---------------------------------------- 198 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN---------------------------------------- 198 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH----------------------------------------
Confidence 9999999999999999999999999877888888888864
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 199 ---~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 199 ---QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ---HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 367899999999999999999988764
No 110
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=210.04 Aligned_cols=139 Identities=25% Similarity=0.416 Sum_probs=122.9
Q ss_pred CCCceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHH
Q psy8397 4 SNHGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
..+.+..+||.+...+++++||.++.. +.+++.++|+.+||. ..+++++.++|||||||++||||
T Consensus 361 lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARA 440 (534)
T COG4172 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARA 440 (534)
T ss_pred hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHH
Confidence 345677889999999999999999763 467899999999997 56899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
|+.+|++++||||||+||-..+..+.++|+.|+++ |.+-+++|||+
T Consensus 441 liLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL--------------------------------- 487 (534)
T COG4172 441 LILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL--------------------------------- 487 (534)
T ss_pred HhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH---------------------------------
Confidence 99999999999999999999999999999999864 55666666664
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
. .+..+|++|+||++|+|++.|+.++++
T Consensus 488 ---------~-VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 488 ---------A-VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred ---------H-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 3 578899999999999999999999886
No 111
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.2e-26 Score=198.67 Aligned_cols=134 Identities=25% Similarity=0.318 Sum_probs=112.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.... +....|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 82 ~i~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 82 QVGMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred heEEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 45677765432 2344688876532 3457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-------------------------------------- 202 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-------------------------------------- 202 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999865 778888888764
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+. .||+++++++|++++.|+++++.
T Consensus 203 -----~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 203 -----EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred -----HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 244 59999999999999999987764
No 112
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-26 Score=194.65 Aligned_cols=134 Identities=24% Similarity=0.417 Sum_probs=113.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+..+++|.. .++..+|+.|++.. ..++.++++.+|+.+..++++++||||||||++||+||+.+|
T Consensus 79 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 79 GIGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred CeEEeccCC--cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 455666543 24455788775431 235788999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.+++++++|.|||++||+++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-------------------------------------- 198 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-------------------------------------- 198 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH--------------------------------------
Confidence 999999999999999999999999999867888888888863
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 199 -----~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 199 -----ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred -----HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 367899999999999999999988764
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-26 Score=194.17 Aligned_cols=133 Identities=26% Similarity=0.381 Sum_probs=112.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+|+....++++.+||||||||++|||||+.+|
T Consensus 83 ~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 83 NVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred heEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 455666543 34566788886531 335778899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+++||||||+|||+.++..+++.|+++.++|.|+|++||+++
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-------------------------------------- 202 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-------------------------------------- 202 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866888888888853
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+.++||++++|.+|++++.|+++++
T Consensus 203 -----~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 203 -----VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred -----HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 35678999999999999999987764
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=3.5e-26 Score=195.21 Aligned_cols=135 Identities=24% Similarity=0.342 Sum_probs=113.7
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
....+.+|.. .++...|+.+++.. .+++.++++.+|+.+..++.+.+||||||||++||+||+.+
T Consensus 87 ~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 87 NKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred hCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence 3566777643 34556788776542 23567889999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~------------------------------------ 208 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG------------------------------------ 208 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999998764 788888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 209 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 209 -------FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred -------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 367889999999999999999887654
No 115
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=2.8e-26 Score=191.30 Aligned_cols=107 Identities=28% Similarity=0.484 Sum_probs=90.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 83 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 83 HIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred cEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 456666643 34566788886532 2467889999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCC
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPS 115 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~ 115 (203)
+|||||||+|||+.++..+++.|+++.+ +|+|||++||+++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 9999999999999999999999999986 4788888888753
No 116
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=4.7e-26 Score=195.27 Aligned_cols=136 Identities=25% Similarity=0.392 Sum_probs=110.0
Q ss_pred ceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...|.+|.....+...+++.+++ ....++.++++.+++. ...++++.+||||||||++|||||+.+
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 45666765432334445554432 1234677889999997 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~------------------------------------ 213 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA------------------------------------ 213 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999998764 778888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++++|++++.|+++++.
T Consensus 214 -------~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 214 -------VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred -------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 366789999999999999999887764
No 117
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=3.3e-26 Score=196.59 Aligned_cols=133 Identities=28% Similarity=0.448 Sum_probs=112.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA 66 (203)
...|.+|.. .++..+|+.+++.. ..++.++++.+|+.+..++++++||||||||++||
T Consensus 87 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 87 NTGYIFQQF--NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred heEEEcccc--ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 356667643 34456788776531 23678899999999889999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG 145 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (203)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~------------------------------ 214 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD------------------------------ 214 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------
Confidence 9999999999999999999999999999999999753 788888888763
Q ss_pred CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||+++++.+|++++.|+++++
T Consensus 215 -------------~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 215 -------------YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred -------------HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 36789999999999999999998775
No 118
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.3e-26 Score=197.68 Aligned_cols=134 Identities=28% Similarity=0.409 Sum_probs=112.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.....+ ...|+.|++.. .+++.++++.+||.+..++++.+|||||+||++||+||+.+|+
T Consensus 85 ~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 85 KVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred heEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4567776543223 45788886632 2457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-------------------------------------- 205 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-------------------------------------- 205 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999864 778888888764
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 206 -----~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 206 -----EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred -----HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 24 479999999999999999988765
No 119
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.7e-26 Score=189.89 Aligned_cols=127 Identities=27% Similarity=0.460 Sum_probs=106.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 73 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 345666543 34566788876532 2456788999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
++||||||+|||+.++..+++.|+++++ +.|||++||+++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~--------------------------------------- 190 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE--------------------------------------- 190 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH---------------------------------------
Confidence 9999999999999999999999999875 478888888753
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+.++||++++|++|++++.|
T Consensus 191 ----~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 191 ----DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred ----HHHHhCCEEEEEECCEEEecC
Confidence 366789999999999998765
No 120
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=3.9e-26 Score=190.67 Aligned_cols=131 Identities=28% Similarity=0.469 Sum_probs=109.6
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..+.+|. +.++...|+.+++.. .+++.++++.++|.+..++++.+||||||||++||+||+.+|++
T Consensus 77 i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCc--CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4556653 234456788776532 24567889999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.+++.+++.|+++++ +.|||++||+++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~---------------------------------------- 193 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD---------------------------------------- 193 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH----------------------------------------
Confidence 999999999999999999999999875 478888888763
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||+++++++|++++.|+++++
T Consensus 194 ---~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 194 ---EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred ---HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 36778999999999999999987653
No 121
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.6e-26 Score=191.85 Aligned_cols=124 Identities=25% Similarity=0.426 Sum_probs=109.6
Q ss_pred ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
++..+||.++.. .+++++.++..+||..+.++.+++|||||||||++||+|+.+-+||+||||+++||
T Consensus 82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence 345588888653 47789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397 87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d 165 (203)
|.-|.++...+.++..+ +.|++|+||.++ .+..+++
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-------------------------------------------Da~~ia~ 198 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMVTHHPE-------------------------------------------DAARIAD 198 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-------------------------------------------HHHHhhh
Confidence 99999999999999854 666666666654 3788999
Q ss_pred EEEEEeCCeEEeeCCcccch
Q psy8397 166 HLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 166 ~v~vl~~G~i~~~g~~~~~~ 185 (203)
+++++++|+|.+.|+.+++.
T Consensus 199 ~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 199 RVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred ceEEEeCCEEEeeccHHHHh
Confidence 99999999999999988765
No 122
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.94 E-value=5.4e-26 Score=193.95 Aligned_cols=111 Identities=27% Similarity=0.479 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC 109 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~ 109 (203)
..++.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ |.|||+
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35678899999997 4789999999999999999999999999999999999999999999999999998754 778888
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+||+++ .+..+||++++|++|++++.|+++++.
T Consensus 205 vsH~~~-------------------------------------------~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 205 VTHDLG-------------------------------------------VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred EeCCHH-------------------------------------------HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 888753 367789999999999999999877653
No 123
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=4.1e-26 Score=189.41 Aligned_cols=123 Identities=30% Similarity=0.435 Sum_probs=101.5
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..|.+|.... +....|+.+++.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 77 i~~~~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 77 VGLVFQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ceEEecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 4566654321 2345788776532 23567789999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.++..+++.|++++++|+|||++||+++
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~---------------------------------------- 195 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD---------------------------------------- 195 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------------
Confidence 9999999999999999999999999866788888888753
Q ss_pred chhHHHhhcCEEEEEeCCe
Q psy8397 156 PSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~ 174 (203)
.+..+||++++|++|+
T Consensus 196 ---~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 196 ---LLLELADRVIVLEDGK 211 (211)
T ss_pred ---HHHHhCCEEEEEeCCC
Confidence 3677899999999885
No 124
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-26 Score=196.27 Aligned_cols=134 Identities=27% Similarity=0.375 Sum_probs=112.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+++|.. .++..+++.++... .+++.++++.+|+.+..++++.+||||||||++|||||+
T Consensus 82 ~i~~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 82 RIGLLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred heEEeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 355666643 23445677775431 235778999999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~---------------------------------- 205 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN---------------------------------- 205 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 778888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|.+|++++.|+++++.
T Consensus 206 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 206 ---------QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 478899999999999999999988764
No 125
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=4.3e-26 Score=189.63 Aligned_cols=123 Identities=24% Similarity=0.422 Sum_probs=103.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 80 RIGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred heEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 345556542 34556788886532 3467789999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------------------------------------- 198 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS--------------------------------------- 198 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999998866788888888864
Q ss_pred CchhHHHhhcCEEEEEeCCe
Q psy8397 155 QPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~ 174 (203)
.+..+||++++|++|+
T Consensus 199 ----~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 199 ----LVDRVAHRVIILDDGR 214 (214)
T ss_pred ----HHHHhcCEEEEecCCC
Confidence 3677899999999885
No 126
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=8e-26 Score=188.58 Aligned_cols=129 Identities=24% Similarity=0.338 Sum_probs=109.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .++..+|+.|+... .+++.++++.+|+.+..++++.+||||||||++||++|+.+|+
T Consensus 71 ~i~~v~q~~--~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 71 PVSMLFQEN--NLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred ceEEEeccC--ccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 455666643 34566788876531 2357789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+++|||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-------------------------------------- 190 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-------------------------------------- 190 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999998754 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
.+.++||++++|++|++++.|+
T Consensus 191 -----~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 191 -----DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred -----HHHhhcCeEEEEECCeEEEecC
Confidence 3677899999999999998875
No 127
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=7.1e-26 Score=189.52 Aligned_cols=130 Identities=27% Similarity=0.373 Sum_probs=105.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------H---HH-HHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------I---GL-VDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~-v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...|.+|.....+...+|+.+++.. . +. +.++++.+++. ...++++.+||||||||++|||||+.
T Consensus 83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL 162 (228)
T ss_pred cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence 4566676543234556888876531 0 11 24678899995 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~----------------------------------- 207 (228)
T cd03257 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG----------------------------------- 207 (228)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999865 788888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||++++|++|+++..|
T Consensus 208 --------~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 208 --------VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred --------HHHHhcCeEEEEeCCEEEecC
Confidence 366789999999999998654
No 128
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=5.2e-26 Score=212.65 Aligned_cols=134 Identities=22% Similarity=0.332 Sum_probs=115.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL 78 (203)
+..|.+|.. .++..+|+.|++. ..+++.++++.+||....++++++|||||||||+||+||+.+|++|||
T Consensus 87 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 87 GIYLVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred CEEEEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 455777643 3456789988753 245788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~------------------------------------------- 201 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP------------------------------------------- 201 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------
Confidence 9999999999999999999999877888888888864
Q ss_pred HHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 159 TIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 202 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 202 EIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHhCCEEEEEECCEEEEecChHHcC
Confidence 367899999999999999999987764
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=6.7e-26 Score=194.87 Aligned_cols=134 Identities=24% Similarity=0.368 Sum_probs=112.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI---- 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~---- 70 (203)
...+.+|... +...+|+.|++.. .+++.++++.+|+.+..++++++||||||||++||+||+
T Consensus 77 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 77 RRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred heEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 3556666432 3355788886532 235778999999998899999999999999999999999
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 71 --DNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 71 --~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
.+|++|||||||+|||+.++..+.+.|+++. ++|.|||++||+++
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-------------------------------- 202 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-------------------------------- 202 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------------------------------
Confidence 5999999999999999999999999999997 56888888888864
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 203 -----------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 203 -----------LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred -----------HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 367899999999999999999987764
No 130
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-26 Score=218.13 Aligned_cols=136 Identities=24% Similarity=0.324 Sum_probs=115.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...|.||.....+++.+|+.+++.. .+++.++++.+||. ...++++.+|||||||||+|||||+.+
T Consensus 402 ~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~ 481 (623)
T PRK10261 402 DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALN 481 (623)
T ss_pred CeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 4667777643335667888876421 24677899999996 678999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 482 p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~------------------------------------ 525 (623)
T PRK10261 482 PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA------------------------------------ 525 (623)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999864 778888887754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|++++++
T Consensus 526 -------~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 526 -------VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred -------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 467899999999999999999988764
No 131
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=6.5e-26 Score=211.31 Aligned_cols=134 Identities=25% Similarity=0.376 Sum_probs=114.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .++..+|+.|++.. ++++.++++.+||.+..++++++||||||||++||+||+
T Consensus 80 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 80 GIGIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred CEEEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 456777653 34566788875421 246788999999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~----------------------------------- 202 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK----------------------------------- 202 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-----------------------------------
Confidence 999999999999999999999999999999866788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 203 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 203 --------EIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred --------HHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 467899999999999999999988764
No 132
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=8.8e-26 Score=194.97 Aligned_cols=131 Identities=26% Similarity=0.322 Sum_probs=110.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE 80 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE 80 (203)
...|.+|.. .++..+|+.|++.. .+++.++++.+||.+..++++.+||||||||++|||+|+.+|++|||||
T Consensus 82 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 82 DTRLMFQDA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred ceEEEecCc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 345666643 34456789887642 4567889999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397 81 PTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159 (203)
Q Consensus 81 Pt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~ 159 (203)
||+|||+.++..+.+.|+++.+ .|.|||++||+++ .
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-------------------------------------------~ 196 (257)
T PRK11247 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-------------------------------------------E 196 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------------------H
Confidence 9999999999999999999865 4778888887753 3
Q ss_pred HHhhcCEEEEEeCCeEEeeCCcc
Q psy8397 160 IFEMVDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 160 i~~~~d~v~vl~~G~i~~~g~~~ 182 (203)
+..+||++++|.+|++++.|+.+
T Consensus 197 ~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 197 AVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhCCEEEEEECCEEEeecccc
Confidence 67889999999999999887643
No 133
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=6.4e-26 Score=190.16 Aligned_cols=132 Identities=24% Similarity=0.413 Sum_probs=111.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL 78 (203)
...+.+|.. .++..+|+.++... ..++.++++.+|+.+..++++.+|||||+||++||||++.+|++|+|
T Consensus 71 ~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll 148 (223)
T TIGR03740 71 KIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL 148 (223)
T ss_pred cEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344555532 34456788887542 34678899999999989999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~------------------------------------------- 185 (223)
T TIGR03740 149 DEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS------------------------------------------- 185 (223)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------
Confidence 9999999999999999999999866788888888853
Q ss_pred HHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397 159 TIFEMVDHLYVIAEGHCVYKGSSAN 183 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i~~~g~~~~ 183 (203)
.+..+||++++|++|++++.|++.+
T Consensus 186 ~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 186 EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHhcCEEEEEeCCEEEEecChhh
Confidence 3678999999999999999998764
No 134
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=7.3e-26 Score=193.85 Aligned_cols=133 Identities=26% Similarity=0.406 Sum_probs=111.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..+.+|.. .+...+|+.+++.. .+++.++++.+++.+..++++.+||||||||++||+||+.
T Consensus 77 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 77 VALVEQDS--DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred eEEecccC--ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 44555543 23345677776521 2356788999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|+++||||||+|||+.++..+.+.|+++.++|.|||++||+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~------------------------------------ 198 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN------------------------------------ 198 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence 99999999999999999999999999999866788888888864
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 199 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 199 -------LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred -------HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 367899999999999999999988764
No 135
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=6e-26 Score=196.06 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=110.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...+++|.....+...+|+.+++. ..+++.++++.+|+. ...++++.+||||||||++||+||+.+
T Consensus 88 ~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (267)
T PRK15112 88 RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILR 167 (267)
T ss_pred cEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhC
Confidence 456667654322344456655432 124577899999994 677889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++
T Consensus 168 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~------------------------------------ 211 (267)
T PRK15112 168 PKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG------------------------------------ 211 (267)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999764 778888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 212 -------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 212 -------MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred -------HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 367889999999999999999877654
No 136
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.8e-26 Score=198.17 Aligned_cols=135 Identities=22% Similarity=0.324 Sum_probs=109.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...|.+|.....++ ..|+.+++.. .+++.++++.++|. ...++++++||||||||++|||||+.+|
T Consensus 91 ~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p 169 (289)
T PRK13645 91 EIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDG 169 (289)
T ss_pred cEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 45666765322222 3477765432 23567789999994 6789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 170 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~------------------------------------- 212 (289)
T PRK13645 170 NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD------------------------------------- 212 (289)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999998754 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 213 ------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 213 ------QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred ------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 367899999999999999999887764
No 137
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.9e-26 Score=211.80 Aligned_cols=109 Identities=24% Similarity=0.380 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+++. +..++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|
T Consensus 383 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 383 KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred HHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 3577899999996 578999999999999999999999999999999999999999999999999999987788888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
|+++ .+.++||++++|.+|++++.|+++++
T Consensus 463 Hd~~-------------------------------------------~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 463 SELP-------------------------------------------EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEeccccC
Confidence 8864 46789999999999999999988876
No 138
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.3e-26 Score=218.20 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=114.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.....++..+||.+++.. ++++.++++.+||.+ ..++++.+|||||||||+||+||+
T Consensus 105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~ 184 (623)
T PRK10261 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184 (623)
T ss_pred CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 4567777654345566888886531 246788999999953 578999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++
T Consensus 185 ~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~---------------------------------- 230 (623)
T PRK10261 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG---------------------------------- 230 (623)
T ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH----------------------------------
Confidence 999999999999999999999999999999854 778888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+|++|++|++++.|+++++.
T Consensus 231 ---------~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 231 ---------VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred ---------HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 467899999999999999999887653
No 139
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.6e-26 Score=195.43 Aligned_cols=134 Identities=23% Similarity=0.405 Sum_probs=111.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .+...+|+.+++.. .+++.++++.+++.+..++++++||||||||++||+||+
T Consensus 86 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 86 KVAYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred heEEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 345556542 23455777775431 235788999999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~---------------------------------- 209 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN---------------------------------- 209 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999764 788888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|.+|++++.|+++++.
T Consensus 210 ---------~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 210 ---------MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred ---------HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 367899999999999999999887764
No 140
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7e-26 Score=211.31 Aligned_cols=134 Identities=22% Similarity=0.305 Sum_probs=113.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~ 67 (203)
+..+.+|.. .++..+|+.|++. ..+++.++++.+||.+..++++++|||||||||+||+
T Consensus 81 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 81 GIGIIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158 (510)
T ss_pred CeEEEeecc--cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 355666643 2345577776542 1346788999999998899999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-------------------------------- 206 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-------------------------------- 206 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------
Confidence 999999999999999999999999999999999877888888888864
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 -----------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 207 -----------EIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred -----------HHHHhCCEEEEEECCEEeeecchhhCC
Confidence 467899999999999999999988764
No 141
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-25 Score=189.50 Aligned_cols=129 Identities=21% Similarity=0.322 Sum_probs=107.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 88 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 88 KLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred cEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 456777643 34566788887532 3467889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++++ +|.|||++||+++
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-------------------------------------- 207 (233)
T PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-------------------------------------- 207 (233)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence 9999999999999999999999999975 4788888888764
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSS 181 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~ 181 (203)
.+.. ++++++|.+|++++.++.
T Consensus 208 -----~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 208 -----LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred -----HHHh-hCEEEEEECCEEEEEecc
Confidence 2444 469999999999987753
No 142
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.1e-26 Score=210.87 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=114.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|.. .++..+|+.|++. ..+++.++++.+|+....++++++||||||||++||+||+.
T Consensus 83 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 83 GIAIIHQEL--ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred CeEEEEecc--ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 456777653 3455678877542 12467889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~------------------------------------ 204 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN------------------------------------ 204 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH------------------------------------
Confidence 99999999999999999999999999999867888888888864
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 205 -------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 205 -------EVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred -------HHHHhcCEEEEEECCEEeeecccccCC
Confidence 367899999999999999999988764
No 143
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=8.9e-26 Score=191.02 Aligned_cols=133 Identities=29% Similarity=0.415 Sum_probs=110.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 75 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 345666542 23455788876532 2356788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++||||||+|||+.++..+++.|+++++ +|.|||++||+++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-------------------------------------- 194 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-------------------------------------- 194 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh--------------------------------------
Confidence 9999999999999999999999999975 4788888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+. .||++++|++|+++..|+++++.
T Consensus 195 -----~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 195 -----EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred -----hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 244 49999999999999999887654
No 144
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-25 Score=190.93 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=112.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.. .++..+|+.|++.. .+.+.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus 72 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 72 DISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred CEEEEeecC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 566777643 34556788776542 2345778999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+++|||||+|||+.+++.+++.|+++..+ |+|+|++||++.
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-------------------------------------- 191 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-------------------------------------- 191 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999998764 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 192 -----~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 192 -----EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred -----HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 367889999999999999999887654
No 145
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=1.1e-25 Score=190.26 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
+++.++++.+||. ...++++. +||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~v 200 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLII 200 (243)
T ss_pred HHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3567789999997 46788887 599999999999999999999999999999999999999999999998778888888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~ 184 (203)
||+++ .+..+ ||++++|++|++++.|+++++
T Consensus 201 sH~~~-------------------------------------------~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 201 THYQR-------------------------------------------LLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EecHH-------------------------------------------HHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 88864 35666 899999999999999988743
No 146
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-25 Score=193.03 Aligned_cols=145 Identities=26% Similarity=0.334 Sum_probs=115.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|..... +...++.++.. ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 84 ~i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 84 HIGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred heeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 456777654322 23355544321 23467788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-------------------------------------- 204 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-------------------------------------- 204 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch--------------------------------------
Confidence 99999999999999999999999998764 788888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP 196 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p 196 (203)
.+.. ||++++|++|++++.|+++++.. .+..++.++|
T Consensus 205 -----~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 205 -----EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred -----HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 2444 99999999999999999887643 3444565554
No 147
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=6.3e-26 Score=212.66 Aligned_cols=136 Identities=26% Similarity=0.422 Sum_probs=113.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...|.+|.....++..+|+.+++.. .+++.++++.+||. ...++++.+|||||||||+||+||+.
T Consensus 363 ~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 442 (529)
T PRK15134 363 RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL 442 (529)
T ss_pred ceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC
Confidence 3567777542234556788876532 24567889999997 57899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 443 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~----------------------------------- 487 (529)
T PRK15134 443 KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH----------------------------------- 487 (529)
T ss_pred CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999864 778888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 488 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 488 --------VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred --------HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 367899999999999999999887764
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=1.2e-25 Score=192.61 Aligned_cols=136 Identities=20% Similarity=0.286 Sum_probs=110.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...+.+|.....+....++.++.. ..+++.++++.+++.+ ..++++++||||||||++|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 456777654322334456544321 1246788999999986 568999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~------------------------------------- 202 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG------------------------------------- 202 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999998754 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 203 ------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 203 ------VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred ------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 367899999999999999999987664
No 149
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=5.3e-26 Score=211.04 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=107.4
Q ss_pred CCCHhHHHh----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy8397 22 RISVDDILD----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97 (203)
Q Consensus 22 ~~~~~~~~~----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l 97 (203)
.+++.++.. ..+++.++++.+||.+..++++++||||||||++||+||+.+|++|||||||+|||+.+++.+++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 178 (490)
T PRK10938 99 GRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL 178 (490)
T ss_pred cccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 367777542 3567889999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 98 ~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
++++++|.|||++||+++ .+.++||++++|++|++++
T Consensus 179 ~~~~~~g~tvii~tH~~~-------------------------------------------~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 179 ASLHQSGITLVLVLNRFD-------------------------------------------EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHhcCCeEEEEeCCHH-------------------------------------------HHHhhCCEEEEEECCEEEE
Confidence 999877888888888864 3678999999999999999
Q ss_pred eCCcccch
Q psy8397 178 KGSSANTI 185 (203)
Q Consensus 178 ~g~~~~~~ 185 (203)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99887653
No 150
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=8.1e-26 Score=187.75 Aligned_cols=124 Identities=24% Similarity=0.375 Sum_probs=104.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 79 ~i~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 79 KIGVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred heEEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 455666543 34566788886532 2357789999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
++||||||+|||+.+++.+.+.|+++.++|.|||++||+++
T Consensus 157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~--------------------------------------- 197 (214)
T cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE--------------------------------------- 197 (214)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999766788888888853
Q ss_pred CchhHHHhhcCEEEEEeCCeE
Q psy8397 155 QPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i 175 (203)
.+..+||++++|++|++
T Consensus 198 ----~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 198 ----LVDTTRHRVIALERGKL 214 (214)
T ss_pred ----HHHHhCCEEEEEeCCcC
Confidence 36678999999999974
No 151
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=8.9e-26 Score=211.62 Aligned_cols=135 Identities=24% Similarity=0.399 Sum_probs=110.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.....+...+++.++.. ..+++.++++.+||.+ ..++++.+|||||||||+|||||+
T Consensus 93 ~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~ 172 (529)
T PRK15134 93 KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172 (529)
T ss_pred ceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh
Confidence 356667654322444466665432 2356788999999975 468999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 173 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~---------------------------------- 218 (529)
T PRK15134 173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS---------------------------------- 218 (529)
T ss_pred cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH----------------------------------
Confidence 999999999999999999999999999999865 778888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|++++.|+++++
T Consensus 219 ---------~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 219 ---------IVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred ---------HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 36789999999999999999988765
No 152
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=193.71 Aligned_cols=135 Identities=23% Similarity=0.314 Sum_probs=111.6
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.+|.....+ ...|+.+++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 81 ~~i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 81 RKIGMVFQNPDNQF-VGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred cceEEEEECHHHhh-ccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 34567776533223 34677776531 235678899999998999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~------------------------------------- 202 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD------------------------------------- 202 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999865 788888888864
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+. .||++++|++|+++..|+++++.
T Consensus 203 ------~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 203 ------EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred ------HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 244 59999999999999999987764
No 153
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=1.6e-25 Score=187.01 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=89.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|. ..+++.+|+.|++.. .+++.++++.+|+.+..++++++||||||||++|||+|+.+|+
T Consensus 84 ~i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 84 KLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred cEEEEecc--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 35566654 234556788886532 2357789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
+|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999754 778888888753
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=190.88 Aligned_cols=133 Identities=26% Similarity=0.326 Sum_probs=110.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a 68 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+|+.+ ..++++.+||||||||++||||
T Consensus 83 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 83 RVQMVFQIP--NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred cEEEEeccC--ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 455666543 24456888887632 235677899999853 5789999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++.+ |.|+|++||+++
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~--------------------------------- 206 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ--------------------------------- 206 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH---------------------------------
Confidence 9999999999999999999999999999999864 788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 207 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 207 ----------QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred ----------HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 367899999999999999999987664
No 155
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=1.2e-25 Score=210.26 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=112.5
Q ss_pred eeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..+.||... .++..+++.+++. ..+++.++++.+||.+..++++++|||||||||+||+||+.+|++
T Consensus 111 i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~l 189 (520)
T TIGR03269 111 IAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189 (520)
T ss_pred EEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 456666422 2345577776553 134678899999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 190 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------------------------------------- 230 (520)
T TIGR03269 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE--------------------------------------- 230 (520)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH---------------------------------------
Confidence 9999999999999999999999999753 778888888764
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+..+||++++|++|++++.|+++++..
T Consensus 231 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 ----VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred ----HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 3678999999999999999998877654
No 156
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=192.21 Aligned_cols=132 Identities=27% Similarity=0.297 Sum_probs=108.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|... ++. .|+.+++.. .+++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 94 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 94 NVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred hEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 3556665432 233 788776542 12467789999883 4578899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~----------------------------------- 214 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ----------------------------------- 214 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-----------------------------------
Confidence 99999999999999999999999999999864 788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 215 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 215 --------QAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred --------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 367889999999999999999987664
No 157
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=1.7e-25 Score=187.52 Aligned_cols=126 Identities=23% Similarity=0.332 Sum_probs=105.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 80 QIGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred heEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 345666643 34455788776532 2246788999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|+++.++|.|+|++||+++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------------------------------------- 198 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG--------------------------------------- 198 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999866788888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEe
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
.+..+||++++|++|+++.
T Consensus 199 ----~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 199 ----LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred ----HHHHhCCEEEEEECCEEcc
Confidence 3678899999999999753
No 158
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=1.3e-25 Score=186.32 Aligned_cols=124 Identities=27% Similarity=0.412 Sum_probs=103.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
...|.+|.. .++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|
T Consensus 77 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 77 KVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred cceEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 345666543 34456788776532 235678899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-------------------------------------- 196 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-------------------------------------- 196 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866788888888863
Q ss_pred cCchhHHHhhcCEEEEEeCCeE
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i 175 (203)
.+.++||++++|++|++
T Consensus 197 -----~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 197 -----FAREVADRVIFMDDGRI 213 (213)
T ss_pred -----HHHHhCCEEEEEeCCcC
Confidence 36789999999999974
No 159
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=192.20 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=111.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.... +...+|+.|++.. ..++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 84 ~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 84 KIGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred ceEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 45677765322 2345788886532 2246788999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-------------------------------------- 204 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-------------------------------------- 204 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh--------------------------------------
Confidence 99999999999999999999999999765 478888888864
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|+++..|+++++.
T Consensus 205 -----~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 205 -----EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred -----HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 23 379999999999999999887654
No 160
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=209.15 Aligned_cols=136 Identities=21% Similarity=0.363 Sum_probs=113.1
Q ss_pred ceeEEEeeec-ccccCCCCHhHHHhH------------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHH
Q psy8397 7 GTIWCWQIIS-AQYSHRISVDDILDT------------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIA 66 (203)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA 66 (203)
+..|.+|... ..++..+|+.+++.. .+++.++++.+|+. ...++++++|||||||||+||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 4566666532 123455777765421 23577899999995 678999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~------------------------------- 456 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP------------------------------- 456 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------
Confidence 9999999999999999999999999999999999877888888888864
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 457 ------------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 457 ------------EVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred ------------HHHhhCCEEEEEECCEEEEEeccccCC
Confidence 467899999999999999999988764
No 161
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=1.3e-25 Score=209.97 Aligned_cols=134 Identities=20% Similarity=0.232 Sum_probs=112.2
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcc-----cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVL-----SKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~-----~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..|.+|.. .++..+|+.+++.. .+++.++++.+||.. ..++++.+|||||||||+|||||+.
T Consensus 367 i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 367 IGILHQEY--DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred EEEEccCc--ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 55667643 24566888887642 235678899999975 5789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++
T Consensus 445 ~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~----------------------------------- 489 (520)
T TIGR03269 445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD----------------------------------- 489 (520)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999754 777888877753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+..+||++++|++|++++.|+++++..
T Consensus 490 --------~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 490 --------FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred --------HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4678999999999999999998877643
No 162
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=2.2e-25 Score=192.84 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=113.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
...|.+|.....+....++.+++. ...++.++++.+|+. ...++++.+||||||||++||+||+.+
T Consensus 90 ~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~ 169 (268)
T PRK10419 90 DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVE 169 (268)
T ss_pred cEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcC
Confidence 466777654333455677776542 123578899999997 578999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++
T Consensus 170 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~------------------------------------ 213 (268)
T PRK10419 170 PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR------------------------------------ 213 (268)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH------------------------------------
Confidence 9999999999999999999999999998764 778888887753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|.+|++++.|+++++.
T Consensus 214 -------~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 214 -------LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred -------HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 467799999999999999999988865
No 163
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.3e-25 Score=210.01 Aligned_cols=110 Identities=20% Similarity=0.338 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+|+. ...++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred HHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3577899999997 788999999999999999999999999999999999999999999999999999987778888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
|+++ .+.++||+++++++|++++.|+++++.
T Consensus 461 Hd~~-------------------------------------------~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 461 SDLE-------------------------------------------EIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEEccccCC
Confidence 8864 477899999999999999999988765
No 164
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=192.85 Aligned_cols=110 Identities=28% Similarity=0.519 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
.+++.++++.+|+.+..++++++||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|||++|
T Consensus 120 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivs 199 (272)
T PRK15056 120 RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVST 199 (272)
T ss_pred HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34677889999999889999999999999999999999999999999999999999999999999999986688888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
|+++ .+.++||+++++ +|+++..|+++++.
T Consensus 200 H~~~-------------------------------------------~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 200 HNLG-------------------------------------------SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCHH-------------------------------------------HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 8863 367899999777 89999999988764
No 165
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=2.7e-25 Score=186.78 Aligned_cols=125 Identities=22% Similarity=0.347 Sum_probs=103.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 89 ~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ 166 (228)
T PRK10584 89 HVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166 (228)
T ss_pred eEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 455666543 34556788876531 3467889999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------------------------- 208 (228)
T PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-------------------------------------- 208 (228)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence 99999999999999999999999999754 777777777753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
.+ ..||+++++++|++++
T Consensus 209 -----~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 209 -----LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred -----HH-HhCCEEEEEECCEEEe
Confidence 24 4599999999999865
No 166
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=209.13 Aligned_cols=110 Identities=20% Similarity=0.356 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+++. +..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++.|.|||++|
T Consensus 374 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 453 (501)
T PRK11288 374 ENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVS 453 (501)
T ss_pred HHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3577899999994 688999999999999999999999999999999999999999999999999999987788888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
||++ .+.++||++++|++|++++.|++++..
T Consensus 454 Hd~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 454 SDLP-------------------------------------------EVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCHH-------------------------------------------HHHhhCCEEEEEECCEEEEEEccccCC
Confidence 8864 477899999999999999999988754
No 167
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.8e-25 Score=186.29 Aligned_cols=130 Identities=23% Similarity=0.380 Sum_probs=112.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
....+||.+. +-...||.|+.. .+++|.++|+.+||.++++..+.+|||||||||+||||++++|+
T Consensus 80 ~IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 80 QIGVVFQDFR--LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeeEeeecc--ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 4556777554 345678888653 57899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+||-||||.+|||....++++++.++.+.|+||++.|||.+
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--------------------------------------- 198 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--------------------------------------- 198 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH---------------------------------------
Confidence 99999999999999999999999999988999999999853
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSS 181 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~ 181 (203)
.+..+-.|++.+.+|+++.+...
T Consensus 199 ----lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 199 ----LVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred ----HHHhccCcEEEEeCCEEEecccc
Confidence 35667889999999999876543
No 168
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-25 Score=187.63 Aligned_cols=135 Identities=25% Similarity=0.332 Sum_probs=112.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+++|.. .++..+|+.+++.. .+++.++++.+|+.+..++.+.+||||||||++|||||+.+|
T Consensus 72 ~~i~~~~q~~--~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (232)
T cd03300 72 RPVNTVFQNY--ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP 149 (232)
T ss_pred cceEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3456666643 34456788877542 235678899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
+++||||||+|||+.+++.+++.|++++++ |.|||++||+++
T Consensus 150 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~------------------------------------- 192 (232)
T cd03300 150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE------------------------------------- 192 (232)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999864 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.+.||+++++++|++++.|+++++.
T Consensus 193 ------~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 193 ------EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred ------HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 367899999999999999999876554
No 169
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=1.5e-25 Score=190.85 Aligned_cols=132 Identities=27% Similarity=0.321 Sum_probs=109.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+|+. +..++++.+||||||||++|||||
T Consensus 83 ~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 83 RVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred heEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 4556665432 334 777776531 23567789999998 778999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~---------------------------------- 204 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ---------------------------------- 204 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH----------------------------------
Confidence 999999999999999999999999999999876 378888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 205 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 205 ---------QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887654
No 170
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=190.85 Aligned_cols=129 Identities=25% Similarity=0.341 Sum_probs=106.9
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..+.+|.. .++...|+.+++.. .+++.++++.+||.+..++++.+||||||||++||+||+.+|++
T Consensus 72 ~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 72 RGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 34555542 34455788876532 23578899999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
|||||||+|||+.++..+++.|+++.+ +|.|||++||+++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~--------------------------------------- 190 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE--------------------------------------- 190 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---------------------------------------
Confidence 999999999999999999999999864 4778888888754
Q ss_pred CchhHHHhhcCEEEEEe--CCeEEeeCCc
Q psy8397 155 QPSATIFEMVDHLYVIA--EGHCVYKGSS 181 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~--~G~i~~~g~~ 181 (203)
.+..+||++++|+ +|+++..++.
T Consensus 191 ----~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 191 ----EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred ----HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 4678999999998 5999887654
No 171
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.9e-25 Score=187.89 Aligned_cols=134 Identities=27% Similarity=0.380 Sum_probs=110.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH---------HHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT---------IGLVDDILDTIG-LVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~L~~~~-L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
...|.+|.. .+++.+|+.+++.. .+.+.++++.++ +....++++.+||||||||++||+||+.+|+++
T Consensus 76 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 76 GIAYVPQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred CeEEeccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 355666543 24566788887642 123567788886 677789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~---------------------------------------- 193 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD---------------------------------------- 193 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH----------------------------------------
Confidence 999999999999999999999998864 778888888753
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++++|+++..|+++++.
T Consensus 194 ---~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 194 ---FARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred ---HHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 367789999999999999999988763
No 172
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=189.35 Aligned_cols=132 Identities=23% Similarity=0.244 Sum_probs=107.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+|+.+ ..++++.+||||||||++|||||
T Consensus 88 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 88 RVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred cEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 4556666432 333 477776532 235677888889843 46888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~---------------------------------- 209 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ---------------------------------- 209 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH----------------------------------
Confidence 999999999999999999999999999999854 688888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 210 ---------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 210 ---------QAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887654
No 173
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=206.17 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=113.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|.. .++..+|+.+++. ..+++.++++.+++....++++.+|||||||||+||+||+.
T Consensus 74 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQEL--NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccc--ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 455667643 2345577777542 13467889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~------------------------------------ 195 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME------------------------------------ 195 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------------------------
Confidence 99999999999999999999999999999877888888888754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 196 -------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 196 -------EIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred -------HHHHhCCEEEEEECCEEEeecChhhCC
Confidence 367899999999999999999987763
No 174
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-25 Score=207.40 Aligned_cols=107 Identities=22% Similarity=0.361 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+|+. +..++++++|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|
T Consensus 387 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vs 466 (510)
T PRK09700 387 RTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466 (510)
T ss_pred HHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3567899999997 788999999999999999999999999999999999999999999999999999987788888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~ 182 (203)
|+++ .+..+||++++|++|++++.++..
T Consensus 467 Hd~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 467 SELP-------------------------------------------EIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred CCHH-------------------------------------------HHHhhCCEEEEEECCEEEEEecCc
Confidence 8864 467899999999999999888763
No 175
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.6e-26 Score=192.24 Aligned_cols=132 Identities=27% Similarity=0.282 Sum_probs=111.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
....+||-+.+ .++|+.|+.. ..+.|+..|+...|++ .+++....||||||||++|||||+
T Consensus 89 ~vGMVFQkPnP---Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 89 RVGMVFQKPNP---FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HheeeccCCCC---CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 34567776664 3388888653 3456888888888864 467778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|+|||||||||+|||.+..++-++|.+|+ +..|||++||.|.
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq----------------------------------- 209 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ----------------------------------- 209 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-----------------------------------
Confidence 9999999999999999999999999999998 5677777777753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.+.+|+..++..|++++.|+.++++
T Consensus 210 --------QAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 210 --------QAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred --------HHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 478899999999999999999998876
No 176
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=4.3e-25 Score=188.89 Aligned_cols=133 Identities=19% Similarity=0.336 Sum_probs=110.6
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc-----
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID----- 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~----- 71 (203)
..+.+|... +...+|+.+++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.
T Consensus 71 i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~ 148 (248)
T PRK03695 71 RAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDI 148 (248)
T ss_pred eEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence 345555322 2344677765432 3467889999999988999999999999999999999997
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 72 --NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 72 --~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 149 ~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~---------------------------------- 194 (248)
T PRK03695 149 NPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN---------------------------------- 194 (248)
T ss_pred CCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH----------------------------------
Confidence 67999999999999999999999999999867888888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 195 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 195 ---------HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ---------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 367899999999999999999887664
No 177
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=6.7e-25 Score=184.56 Aligned_cols=129 Identities=33% Similarity=0.570 Sum_probs=105.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhHH---------------HHHHH-HHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDTI---------------GLVDD-ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~-~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
+..+.+|. ..++..+|+.|++... +++.+ .++.+++.+..++.+++|||||+||++|||+|+
T Consensus 82 ~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 82 CVAYVRQD--DILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cEEEeCCC--CccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 34555554 2344567888766421 12344 788899988889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.++++.++|.|+|++||++.+
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~---------------------------------- 205 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS---------------------------------- 205 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH----------------------------------
Confidence 9999999999999999999999999999988667888888887631
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+.++||++++|++|++++.|
T Consensus 206 --------~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 206 --------DLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred --------HHHHhCCEEEEEeCCEEEecC
Confidence 367899999999999998765
No 178
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=3.8e-25 Score=187.69 Aligned_cols=135 Identities=24% Similarity=0.355 Sum_probs=113.3
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
++..+++|.. .++..+|+.|++.. .+++.++++.+++.+..++.+++||+||+||++||++|+.+|
T Consensus 72 ~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 72 RKIGFVFQHY--ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred cCEEEEecCh--hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3456666543 34556788776532 235678899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++++|||||+|||+.++..+++.|+++.++ |+|||++||+++
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~------------------------------------- 192 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE------------------------------------- 192 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999998765 788888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||+++++++|++++.|+++++.
T Consensus 193 ------~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 193 ------EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred ------HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 367899999999999999999887664
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.7e-25 Score=188.14 Aligned_cols=133 Identities=25% Similarity=0.292 Sum_probs=108.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+. ...++++.+||||||||++||||
T Consensus 86 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 86 EVGMVFQYP--NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred ceeEEecCC--ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 455666543 24456788876532 12466788888874 35788999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 164 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~--------------------------------- 209 (253)
T PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA--------------------------------- 209 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH---------------------------------
Confidence 9999999999999999999999999999999864 578888888753
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 210 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 210 ----------QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred ----------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999987653
No 180
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=3.2e-25 Score=187.06 Aligned_cols=118 Identities=23% Similarity=0.361 Sum_probs=101.3
Q ss_pred ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
+...+|+.|++.. .+++.++++.+++.+..++++++||||||||++|||+|+.+|+++||||||+|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 3445788776532 2346778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.+++.+++.|+++.++|.|||++||+++ .+..+||+
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-------------------------------------------~~~~~~d~ 211 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-------------------------------------------SIKRLCDR 211 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCE
Confidence 99999999999998866778888888753 36788999
Q ss_pred EEEEeCCeEEeeC
Q psy8397 167 LYVIAEGHCVYKG 179 (203)
Q Consensus 167 v~vl~~G~i~~~g 179 (203)
++++++|++++.|
T Consensus 212 i~~l~~G~i~~~g 224 (224)
T cd03220 212 ALVLEKGKIRFDG 224 (224)
T ss_pred EEEEECCEEEecC
Confidence 9999999998765
No 181
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=188.80 Aligned_cols=133 Identities=25% Similarity=0.267 Sum_probs=110.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl 77 (203)
...+.+|... ++. .|+.+++.. ..++.++++.+++. +..++++.+||||||||++||+||+.+|++||
T Consensus 78 ~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 78 KIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred cEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4566666532 333 577776531 24677899999996 57899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
|||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~----------------------------------------- 193 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME----------------------------------------- 193 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-----------------------------------------
Confidence 99999999999999999999999764 788888888753
Q ss_pred hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 157 SATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 194 --~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 194 --QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred --HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 367899999999999999999887654
No 182
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=6.2e-25 Score=204.33 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=110.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSK-HTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~-~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|.. .++..+|+.+++.. .+++.++++.+++.... ++++++|||||||||+||+||
T Consensus 79 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 79 GIVIIHQEL--TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred CEEEEeecc--ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 456677653 24455777665421 23577899999998654 678999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~---------------------------------- 202 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN---------------------------------- 202 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH----------------------------------
Confidence 9999999999999999999999999999999877888888888854
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|++++.|+++++
T Consensus 203 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 203 ---------EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred ---------HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 46789999999999999999988765
No 183
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=188.74 Aligned_cols=132 Identities=24% Similarity=0.233 Sum_probs=108.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.+++.. .+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 95 ~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 95 KVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred ceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 4556666432 333 677776531 24577889999974 457889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++. ++.|||++||+++
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~---------------------------------- 216 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ---------------------------------- 216 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH----------------------------------
Confidence 99999999999999999999999999999986 4678888888853
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 217 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 217 ---------QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887653
No 184
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=6.7e-25 Score=186.86 Aligned_cols=108 Identities=20% Similarity=0.295 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
+++.++++.+|+. ...++++. .||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus 128 ~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~ 207 (252)
T CHL00131 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILI 207 (252)
T ss_pred HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567889999997 46788887 599999999999999999999999999999999999999999999998668888888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSAN 183 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~ 183 (203)
||+++ .+... ||++++|++|++++.|+++.
T Consensus 208 tH~~~-------------------------------------------~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 208 THYQR-------------------------------------------LLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred ecCHH-------------------------------------------HHHhhhCCEEEEEeCCEEEEecChhh
Confidence 88854 24455 89999999999999998873
No 185
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.2e-25 Score=186.32 Aligned_cols=132 Identities=22% Similarity=0.219 Sum_probs=107.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... +++ .|+.|++.. .+++.++++.+++. +..++++.+||||||||++||+||
T Consensus 87 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 87 EIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred cEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 4566666432 333 688876532 23455678888874 356889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~---------------------------------- 208 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ---------------------------------- 208 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 209 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 209 ---------QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887764
No 186
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-24 Score=186.25 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=108.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|.. .++..+|+.|++.. .+++.++++.+++. +..++.+++||||||||++||+||
T Consensus 86 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 86 RVGMVFQKP--NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred cEEEEecCC--CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 455666643 24456787776532 23567788889985 356788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~---------------------------------- 208 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ---------------------------------- 208 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH----------------------------------
Confidence 999999999999999999999999999999974 578888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|.+|+++..|+++++.
T Consensus 209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 209 ---------QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred ---------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999987654
No 187
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.3e-25 Score=188.28 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=107.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..|.+|... ++. .|+.+++.. .+++.++++.+|+.+ ..++++.+||||||||++|||||
T Consensus 85 ~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 85 NVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred heEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 4566665432 233 477765431 234677889999853 56889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~---------------------------------- 206 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ---------------------------------- 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH----------------------------------
Confidence 99999999999999999999999999999985 4688888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 207 ---------~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 207 ---------QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred ---------HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 367899999999999999999988764
No 188
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=188.63 Aligned_cols=132 Identities=25% Similarity=0.265 Sum_probs=108.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L----~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++ .+|+.|++.. .+++.++++.+++ .+..++++++||||||||++|||+|
T Consensus 89 ~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 89 KIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred ceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3556665432 23 3788876532 2346677888887 4567899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~---------------------------------- 210 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ---------------------------------- 210 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999964 678888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 211 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 211 ---------QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367889999999999999999987764
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=7.6e-25 Score=190.57 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~ 103 (203)
+++.++++.+|+....++++.+||||||||++|||+|+ .+|++|||||||+|||+.++..+++.|+++.++
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 203 (272)
T PRK13547 124 EIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD 203 (272)
T ss_pred HHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 35778899999998899999999999999999999999 499999999999999999999999999999865
Q ss_pred -CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397 104 -GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 104 -g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~ 182 (203)
|.|||++||+++ .+.++||++++|.+|++++.|+++
T Consensus 204 ~~~tviiisH~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 204 WNLGVLAIVHDPN-------------------------------------------LAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred cCCEEEEEECCHH-------------------------------------------HHHHhCCEEEEEECCeEEEecCHH
Confidence 778888888753 367899999999999999999987
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 241 ~~~ 243 (272)
T PRK13547 241 DVL 243 (272)
T ss_pred HHc
Confidence 764
No 190
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=6.7e-25 Score=204.11 Aligned_cols=109 Identities=25% Similarity=0.432 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+++.. ..++++++||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred HHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35778999999974 68999999999999999999999999999999999999999999999999999987788888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
|+++ .+.++||+++++.+|+++..++.+++
T Consensus 461 Hd~~-------------------------------------------~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 461 SELA-------------------------------------------EVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEEccccC
Confidence 8864 47789999999999999988876543
No 191
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=186.79 Aligned_cols=133 Identities=25% Similarity=0.273 Sum_probs=108.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|.. .++..+|+.+++.. .+++.++++.+|+. +..++++.+||||||||++|||||
T Consensus 86 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 86 TIGMVFQRP--NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred ceEEEcccc--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 345556532 23456788876531 23566788888884 467889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~---------------------------------- 208 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ---------------------------------- 208 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~~~~ 185 (203)
.+.++||++++++ +|++++.|+++++.
T Consensus 209 ---------~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 209 ---------QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ---------HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 3678999999997 79999999987764
No 192
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=186.92 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=107.6
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..+.+|... +++ .|+.|++.. .+++.++++.+++. +..++++.+||||||||++|||+|+
T Consensus 90 i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 90 VSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred EEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 445555322 334 788776531 23467788888874 3568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.++..+++.|++++. +|.|||++||+++
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~---------------------------------- 212 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH---------------------------------- 212 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH----------------------------------
Confidence 99999999999999999999999999999875 4778888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeC-----CeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAE-----GHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~-----G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++ |++++.|+++++.
T Consensus 213 ---------~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 213 ---------QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ---------HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 47789999999999 9999999998764
No 193
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=8.4e-25 Score=188.02 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=102.1
Q ss_pred CCHhHHHh-----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy8397 23 ISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97 (203)
Q Consensus 23 ~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l 97 (203)
.++.++.. ..+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 84 LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred hhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 35655432 1356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397 98 KALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV 176 (203)
Q Consensus 98 ~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~ 176 (203)
+++.++ |.|||++||+++ .+.++||++++|++ +++
T Consensus 164 ~~~~~~~g~tiiivsH~~~-------------------------------------------~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 164 DQLRRELDCAVLMVSHDLH-------------------------------------------LVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred HHHHHhcCCEEEEEecCHH-------------------------------------------HHHHhCCEEEEECC-ceE
Confidence 998765 778888888754 46788999999965 788
Q ss_pred eeCCcccch
Q psy8397 177 YKGSSANTI 185 (203)
Q Consensus 177 ~~g~~~~~~ 185 (203)
..|+++++.
T Consensus 200 ~~g~~~~~~ 208 (251)
T PRK09544 200 CSGTPEVVS 208 (251)
T ss_pred eeCCHHHHh
Confidence 999887664
No 194
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=7.4e-25 Score=185.99 Aligned_cols=118 Identities=31% Similarity=0.427 Sum_probs=101.3
Q ss_pred ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
++..+|+.|++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 4456788876421 2346778999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397 87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d 165 (203)
+.+++.+.+.|++++++ |.|||++||+++ .+..+||
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-------------------------------------------~~~~~~d 222 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMK-------------------------------------------DIEALAR 222 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHH-------------------------------------------HHHHhCC
Confidence 99999999999999764 778888888753 3678999
Q ss_pred EEEEEeCCeEEeeC
Q psy8397 166 HLYVIAEGHCVYKG 179 (203)
Q Consensus 166 ~v~vl~~G~i~~~g 179 (203)
+++++.+|++++.|
T Consensus 223 ~i~~l~~G~i~~~g 236 (236)
T cd03267 223 RVLVIDKGRLLYDG 236 (236)
T ss_pred EEEEEeCCEEEecC
Confidence 99999999998765
No 195
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=202.34 Aligned_cols=130 Identities=25% Similarity=0.354 Sum_probs=109.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
+..+.+|.. .++..+|+.+++.. .+++.++++.+|+....++++.+||||||||++||++|+.
T Consensus 80 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 80 GVAIIYQEL--HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred CEEEEEech--hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 456667643 24456777765421 3467889999999888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~------------------------------------ 201 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME------------------------------------ 201 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------------------------
Confidence 99999999999999999999999999999866788888888754
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSS 181 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~ 181 (203)
.+..+||++++|++|+++..++.
T Consensus 202 -------~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 202 -------EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred -------HHHHhCCEEEEEECCEEEeecCc
Confidence 36789999999999999877654
No 196
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=184.33 Aligned_cols=133 Identities=26% Similarity=0.295 Sum_probs=106.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|.. .++..+|+.|++.. .+++.++++.+++. +..++++++||||||||++||++|
T Consensus 86 ~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 86 RVGMVFQKP--NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred eeEEEeccC--ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 456677643 24455788776532 12234456666653 456889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~---------------------------------- 208 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH---------------------------------- 208 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 688888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 209 ---------QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367799999999999999999987664
No 197
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.1e-25 Score=180.69 Aligned_cols=121 Identities=28% Similarity=0.426 Sum_probs=109.1
Q ss_pred CCCCHhHHHh-------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy8397 21 HRISVDDILD-------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87 (203)
Q Consensus 21 ~~~~~~~~~~-------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~ 87 (203)
+.+||-|++- .+.++.++|+.+.|.+++|+.+-.|||||+|||+|||||+++|++|++||||++|||
T Consensus 95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 4588887652 356788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE
Q psy8397 88 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 167 (203)
Q Consensus 88 ~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v 167 (203)
+-...+.++|++|+..|.|=+++||..+ .+.+.+.++
T Consensus 175 eitaqvv~iikel~~tgitqvivthev~-------------------------------------------va~k~as~v 211 (242)
T COG4161 175 EITAQIVSIIKELAETGITQVIVTHEVE-------------------------------------------VARKTASRV 211 (242)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEeehh-------------------------------------------HHHhhhhhe
Confidence 9999999999999988999999999854 367789999
Q ss_pred EEEeCCeEEeeCCcccc
Q psy8397 168 YVIAEGHCVYKGSSANT 184 (203)
Q Consensus 168 ~vl~~G~i~~~g~~~~~ 184 (203)
+.|.+|+|+..|+.+.+
T Consensus 212 vyme~g~ive~g~a~~f 228 (242)
T COG4161 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EeeecCeeEeecchhhc
Confidence 99999999999987654
No 198
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=1.9e-24 Score=183.50 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
..++.++++.+++. ...++++. +||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|.|||+
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred HHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44667888999995 56677775 79999999999999999999999999999999999999999999999866788888
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccc
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~ 184 (203)
+||+++ .+... +|+++++++|++++.|+++.+
T Consensus 201 ~sH~~~-------------------------------------------~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 201 VTHYQR-------------------------------------------ILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EeCCHH-------------------------------------------HHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 888853 24555 899999999999999988744
No 199
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=185.20 Aligned_cols=137 Identities=25% Similarity=0.422 Sum_probs=114.3
Q ss_pred CCceeEEEeeecccccCCCCHhHHHhHH----------HH-HHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 5 NHGTIWCWQIISAQYSHRISVDDILDTI----------GL-VDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
..|..|++|.- ..++++||+|++..- ++ ++++.+.| .|.+.++++.++|||||||.++|||||+.+
T Consensus 77 r~Gi~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 77 RLGIAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred hCCeEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 35778888643 467899999998631 11 56677777 477889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|+|||||.||-|.-.+++++.|++++++ |.||+++.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-------------------------------------- 196 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-------------------------------------- 196 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc--------------------------------------
Confidence 9999999999999999999999999999953 4555555554
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.. .+.+++||.++|.+|+|+++|+.+++..
T Consensus 197 ----~~-~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 197 ----AR-FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred ----HH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 33 4788999999999999999999988763
No 200
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=185.63 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=106.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a 68 (203)
+..|.+|... ++.. |+.+++.. .+.+.++++.+|+.+ ..++++.+||||||||++|||+
T Consensus 87 ~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 87 KVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred hEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 4566776432 2233 66665421 234567889999864 4678899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~--------------------------------- 209 (251)
T PRK14244 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK--------------------------------- 209 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH---------------------------------
Confidence 999999999999999999999999999999985 4788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 210 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 210 ----------QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred ----------HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 367889999999999999999887654
No 201
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.7e-24 Score=183.17 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=107.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+.+|... ++. .|+.+++.. .+.+.++++.+++.. ..++++.+||||||||++||+|
T Consensus 84 ~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 84 KKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 34566666432 333 688776542 123566788888853 4788999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~--------------------------------- 206 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG--------------------------------- 206 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH---------------------------------
Confidence 9999999999999999999999999999999864 678888888853
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++++++|+++..|+++++.
T Consensus 207 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 207 ----------QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred ----------HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 367889999999999999999987664
No 202
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=185.15 Aligned_cols=132 Identities=27% Similarity=0.290 Sum_probs=108.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+++. ...++++.+||||||||++||||
T Consensus 80 ~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 80 NVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 3556666432 233 588776521 22467789999994 45688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++++|||||+|||+.++..+.+.|+++.+ |.|+|++||+++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~--------------------------------- 202 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ--------------------------------- 202 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH---------------------------------
Confidence 9999999999999999999999999999999864 788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 203 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 203 ----------QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred ----------HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 367899999999999999999887654
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=183.50 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=107.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
.+..+.+|... ++. .|+.+++.. .+++.++++.+++. ...++++.+||||||||++||||
T Consensus 85 ~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 85 KEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred ccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 34556666432 333 688876542 13456788888984 45688999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~--------------------------------- 207 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ--------------------------------- 207 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH---------------------------------
Confidence 9999999999999999999999999999999864 678888888753
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 208 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 208 ----------QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred ----------HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 367889999999999999999887653
No 204
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=185.95 Aligned_cols=108 Identities=31% Similarity=0.396 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 34 LVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 34 ~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
++.++++.+++. +..++++++||||||||++|||+|+.+|+++||||||+|||+.++..+++.|+++.+ +.|+|+
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii 209 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVI 209 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 456678888885 346889999999999999999999999999999999999999999999999999864 678888
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+||+++ .+.++||++++|++|+++..|+++++.
T Consensus 210 vtH~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 210 VTHNMQ-------------------------------------------QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEcCHH-------------------------------------------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 888864 367899999999999999999988764
No 205
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=1.5e-24 Score=177.03 Aligned_cols=103 Identities=32% Similarity=0.565 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEec
Q psy8397 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH 112 (203)
.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||
T Consensus 77 ~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 77 YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred HHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3445899999998889999999999999999999999999999999999999999999999999999765 778888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
+++ .+.++||+++++.+|++++.|
T Consensus 157 ~~~-------------------------------------------~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 157 DLN-------------------------------------------LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CHH-------------------------------------------HHHHhCCEEEEEECCEEEecC
Confidence 754 366899999999999987654
No 206
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=6.4e-25 Score=188.99 Aligned_cols=125 Identities=23% Similarity=0.392 Sum_probs=113.8
Q ss_pred ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
+++.+||.|-+. .++++..||+.+++.....+++.+||.|++|++.+..+++|+|++++||||+||||
T Consensus 83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 567788888543 46678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
|.+.+.+.+.+.+++..|.|||++||.|+ .+.++||+
T Consensus 163 PVN~elLk~~I~~lk~~GatIifSsH~Me-------------------------------------------~vEeLCD~ 199 (300)
T COG4152 163 PVNVELLKDAIFELKEEGATIIFSSHRME-------------------------------------------HVEELCDR 199 (300)
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEecchHH-------------------------------------------HHHHHhhh
Confidence 99999999999999988888888888875 47899999
Q ss_pred EEEEeCCeEEeeCCcccchh
Q psy8397 167 LYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~~ 186 (203)
+++|++|+.|..|+..++.+
T Consensus 200 llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 200 LLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hheecCCceEEeccHHHHHH
Confidence 99999999999999988765
No 207
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=186.28 Aligned_cols=132 Identities=23% Similarity=0.213 Sum_probs=106.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 95 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 95 RIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred ceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 3456665432 333 488776542 24566778888763 45788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++
T Consensus 172 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~------------------------------------ 214 (269)
T PRK14259 172 EPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ------------------------------------ 214 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999864 678888888864
Q ss_pred eecCchhHHHhhcCEEEEEeC-----------CeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAE-----------GHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~-----------G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++ |++++.|+++++.
T Consensus 215 -------~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 215 -------QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred -------HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 46789999999996 6789999987764
No 208
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.5e-24 Score=227.66 Aligned_cols=137 Identities=26% Similarity=0.412 Sum_probs=117.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+|+|.. .+...+|+.|.+.. +++++++++.+||.+.+++++++|||||||||+||+||+.+|+
T Consensus 2013 ~IGy~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2013 NMGYCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hEEEEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 356778742 34567899997642 2356778999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+||||.+++.+++.|++++++|+|||+|||+++
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me--------------------------------------- 2131 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME--------------------------------------- 2131 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH---------------------------------------
Confidence 99999999999999999999999999877888888888864
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL 188 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 188 (203)
++..+|||+++|.+|+++..|+++++...+
T Consensus 2132 ----e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2132 ----ECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred ----HHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 467899999999999999999998875433
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-24 Score=183.75 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=108.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|... +++ .|+.|++.. .+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 89 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 89 QIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred heEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 4566666432 333 788887532 23456778888873 467889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~---------------------------------- 210 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ---------------------------------- 210 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEe-----CCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIA-----EGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~-----~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|+ +|++++.|+++++.
T Consensus 211 ---------~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 211 ---------QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred ---------HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 4678999999998 59999999988764
No 210
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=186.63 Aligned_cols=132 Identities=23% Similarity=0.282 Sum_probs=106.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|... ++. .|+.+++.. .+.+.++++.+++. ...++++++||||||||++|||||
T Consensus 103 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 103 EIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred cEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 4556665432 223 377765431 23456678888874 456889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~---------------------------------- 224 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ---------------------------------- 224 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888853
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 225 ---------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 225 ---------QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887654
No 211
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=186.47 Aligned_cols=132 Identities=23% Similarity=0.278 Sum_probs=107.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a 68 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+|+.+ ..++++.+||||||||++||||
T Consensus 101 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 101 RVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred ceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 3456665432 223 377776532 234677899999953 4678899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~--------------------------------- 223 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ--------------------------------- 223 (267)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH---------------------------------
Confidence 9999999999999999999999999999999864 678888888854
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|+++++.
T Consensus 224 ----------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 224 ----------QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred ----------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887654
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=183.99 Aligned_cols=133 Identities=23% Similarity=0.237 Sum_probs=108.7
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+.+|... ++. .|+.+++.. .+++.++++.+++. +..++++.+||||||||++||++
T Consensus 85 ~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 85 KRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred hheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 34667776532 333 787776532 12456788898874 45788999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--------------------------------- 207 (251)
T PRK14270 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ--------------------------------- 207 (251)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH---------------------------------
Confidence 9999999999999999999999999999999875 578888888753
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 208 ----------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 208 ----------QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred ----------HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 367889999999999999999988764
No 213
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=192.77 Aligned_cols=134 Identities=22% Similarity=0.366 Sum_probs=116.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE 80 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE 80 (203)
...|+|| .+++++.+||..++.. ....+++.+.+|++++.++++.+|||||||||+|+|||+..|++|+|||
T Consensus 77 riGYVFQ--DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 77 RIGYVFQ--DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred eeeeEee--ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence 4578887 4567788999988753 4567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397 81 PTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159 (203)
Q Consensus 81 Pt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~ 159 (203)
|.+.||..-.++++-.|.+|.++ ..-|+++||-+ . +
T Consensus 155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~------------------------------------------~-E 191 (352)
T COG4148 155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSL------------------------------------------D-E 191 (352)
T ss_pred chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH------------------------------------------H-H
Confidence 99999999999999999999864 45555555554 3 5
Q ss_pred HHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 160 IFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 160 i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+.+++|++++|.+|++.+.|+.+++.
T Consensus 192 v~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 192 VLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred HHhhhheEEEecCCeEEecCcHHHHh
Confidence 88999999999999999999998875
No 214
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.7e-24 Score=183.21 Aligned_cols=132 Identities=26% Similarity=0.289 Sum_probs=106.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.+++.. .+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 85 ~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 85 RVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred cEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 3556666432 333 677776532 23456677888764 456889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||+|||+.++..+++.|+++.+ |.|||++||+++
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~---------------------------------- 206 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ---------------------------------- 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH----------------------------------
Confidence 999999999999999999999999999999854 788888888863
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 207 ---------~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 207 ---------QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred ---------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 367889999999999999999887654
No 215
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=5.4e-24 Score=175.86 Aligned_cols=107 Identities=27% Similarity=0.492 Sum_probs=91.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
+..+++|.. .++...|+.|++.. .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 77 ~i~~~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 77 KLGYLFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred CeeEEecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 566677643 34456888876542 3467789999999989999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+|||||||+|||+.++..+++.|+++.++|.|+|++||+++
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999866888888888863
No 216
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=186.07 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=106.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|... +++ .|+.|++.. .+++.++++.+|+. +..++++.+||||||||++|||||+.
T Consensus 121 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~ 197 (285)
T PRK14254 121 RIGMVFQKPN--PFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP 197 (285)
T ss_pred cEEEEecCCc--cCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 4556665432 333 378776532 34577889999884 45788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|++++++ .|||++||+++
T Consensus 198 ~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~------------------------------------ 240 (285)
T PRK14254 198 DPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ------------------------------------ 240 (285)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH------------------------------------
Confidence 99999999999999999999999999999753 68888888753
Q ss_pred eecCchhHHHhhcCEEE-EEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLY-VIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~-vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||+++ ++++|+++..|+++++.
T Consensus 241 -------~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 241 -------QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred -------HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 3678899975 67999999999877653
No 217
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=181.10 Aligned_cols=132 Identities=24% Similarity=0.237 Sum_probs=105.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+++|... ++. .|+.+++.. .+++.+.++.+++. +..++++++||||||||++||++|
T Consensus 87 ~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 87 QVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred eEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 4566666432 333 577776532 12345567777763 456889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~---------------------------------- 208 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH---------------------------------- 208 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH----------------------------------
Confidence 999999999999999999999999999999865 478888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+++..|++.++.
T Consensus 209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 209 ---------QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 367899999999999999999887654
No 218
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.3e-24 Score=185.21 Aligned_cols=125 Identities=16% Similarity=0.253 Sum_probs=106.5
Q ss_pred ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
+...+|+.+++.. .+.+..+++.+++.+..++++++|||||+||++||+||+.+|++|||||||+|||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 3445677776531 2234567888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.++..+++.|.++.+.|.|||++||+++ .+..+||+
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-------------------------------------------~i~~~~d~ 212 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-------------------------------------------QVRQFCTK 212 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------HHHHHcCE
Confidence 99999999999999867888888888853 36788999
Q ss_pred EEEEeCCeEEeeCCcccchh
Q psy8397 167 LYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~~ 186 (203)
+++|++|+++..|+++++..
T Consensus 213 i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 213 IAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred EEEEECCEEEEeCCHHHHHH
Confidence 99999999999999887653
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.2e-24 Score=182.52 Aligned_cols=133 Identities=24% Similarity=0.252 Sum_probs=108.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
+...+.+|... ++ .+|+.|++.. ..++.++++.+++.. ..++++.+|||||+||++|||||+
T Consensus 89 ~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 89 RYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 34566666432 33 4888876642 246788899999853 346788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.|+++. ++.|+|++||+++
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~----------------------------------- 209 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ----------------------------------- 209 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-----------------------------------
Confidence 9999999999999999999999999999986 4678888888864
Q ss_pred EeecCchhHHHhhcCEEEEEe--------CCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIA--------EGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~--------~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|+ +|++++.|+++++.
T Consensus 210 --------~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 210 --------QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred --------HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 3678999999996 89999999988764
No 220
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=199.18 Aligned_cols=110 Identities=23% Similarity=0.394 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+++.++++.+++. +..++++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus 368 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~v 447 (491)
T PRK10982 368 KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447 (491)
T ss_pred HHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEE
Confidence 34577889999995 56899999999999999999999999999999999999999999999999999998778888888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
||+++ .+..+||++++|.+|+++..+++++.
T Consensus 448 sHd~~-------------------------------------------~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 448 SSEMP-------------------------------------------ELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred CCChH-------------------------------------------HHHhhCCEEEEEECCEEEEEEccccC
Confidence 88864 46789999999999999988876543
No 221
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.5e-24 Score=189.20 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=108.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH---------H----HHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT---------I----GLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+++|... ++ ..|+.+++.. + +.+.++++.++|. ...++++.+||||||||++||||
T Consensus 163 ~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 163 TRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred ccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 45666776433 22 4688777652 1 1246678888773 35688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|++||+++
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~--------------------------------- 285 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA--------------------------------- 285 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH---------------------------------
Confidence 9999999999999999999999999999999875 578888888764
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||+|++|++|+++..|++.++.
T Consensus 286 ----------~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 286 ----------QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred ----------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 467889999999999999999999875
No 222
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=3.5e-24 Score=180.96 Aligned_cols=98 Identities=33% Similarity=0.520 Sum_probs=86.4
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++
T Consensus 127 ~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~------- 198 (237)
T cd03252 127 GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS------- 198 (237)
T ss_pred cccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------
Confidence 44555678899999999999999999999999999999999999999999999999986 4788888888864
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||+++++++|++++.|+++++.
T Consensus 199 ------------------------------------~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 199 ------------------------------------TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred ------------------------------------HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 24 469999999999999999887764
No 223
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=7.9e-24 Score=177.37 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=103.1
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.+..+.+|... ++..+|+.+++.. .+++.++++.+|+.+..++++.+||||||||++|||+|+.+
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 82 RNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred hheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 45667776532 3455777765431 23578899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++++|||||+|||+.++..+++.|+++.+ .|+|||++||+++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~------------------------------------ 203 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR------------------------------------ 203 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------------------------
Confidence 999999999999999999999999999875 3778888777752
Q ss_pred eecCchhHHHhhcCEEEEEeCCeE
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i 175 (203)
..++||++++|.+|++
T Consensus 204 --------~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 204 --------ILDVADRIVHMEDGKL 219 (220)
T ss_pred --------HHhhCCEEEEEECCEE
Confidence 3478999999999986
No 224
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=5.1e-24 Score=175.74 Aligned_cols=125 Identities=24% Similarity=0.391 Sum_probs=108.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...++||.|. +-+.+|..|+.. .+..+.++|+.+||.+..+.++++|||||+|||+||||++..|+
T Consensus 89 ~vGfVFQSF~--Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~ 166 (228)
T COG4181 89 HVGFVFQSFH--LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD 166 (228)
T ss_pred ceeEEEEeee--ccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence 3567787655 457788877653 35568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+||-||||.+||..+..++.+.+-.++++ |.|.|++|||+
T Consensus 167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--------------------------------------- 207 (228)
T COG4181 167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--------------------------------------- 207 (228)
T ss_pred EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH---------------------------------------
Confidence 99999999999999999999999999875 77777777775
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
.+...|+|.+.|..|+++.
T Consensus 208 -----~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 208 -----QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred -----HHHHhhhheeeeecceecc
Confidence 2567899999999999875
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.3e-24 Score=183.66 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=105.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
+..+.+|... ++. .|+.+++.. .+.+.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 102 ~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 102 QVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred cEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 3445555432 233 377776532 22345667777763 45788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~------------------------------------ 221 (274)
T PRK14265 179 KPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ------------------------------------ 221 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH------------------------------------
Confidence 9999999999999999999999999999864 678888888864
Q ss_pred eecCchhHHHhhcCEEEEEe---------CCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIA---------EGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~---------~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|+ +|++++.|+++++.
T Consensus 222 -------~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 222 -------QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred -------HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 4678999999997 89999999998764
No 226
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=181.59 Aligned_cols=133 Identities=25% Similarity=0.240 Sum_probs=106.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+.+|... +++ .|+.|++.. .+.+.++++.+++. +..++++.+||||||||++||||
T Consensus 85 ~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 85 KRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred ceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 34666666533 233 377776532 12355567777764 45789999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~--------------------------------- 207 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ--------------------------------- 207 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH---------------------------------
Confidence 999999999999999999999999999999985 5788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 208 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 208 ----------QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred ----------HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 367889999999999999999887653
No 227
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=186.46 Aligned_cols=132 Identities=26% Similarity=0.269 Sum_probs=106.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L----~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..|.+|... +++ .|+.|++.. .+++.++++.+|+ .+..++++.+||||||||++|||||
T Consensus 121 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 121 KIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred cEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 4556665432 333 377776532 2345677888887 3567889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~---------------------------------- 242 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ---------------------------------- 242 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888754
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 243 ---------~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 243 ---------QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367889999999999999999987664
No 228
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=5e-24 Score=200.56 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=107.9
Q ss_pred ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
+...+|+.|++.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 3445677776432 2346678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.++..+++.|++++++|.|||++||+++ .+..+||+
T Consensus 176 ~~sr~~LlelL~el~~~G~TIIIVSHdl~-------------------------------------------~i~~l~Dr 212 (549)
T PRK13545 176 QTFTKKCLDKMNEFKEQGKTIFFISHSLS-------------------------------------------QVKSFCTK 212 (549)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCHH-------------------------------------------HHHHhCCE
Confidence 99999999999999866888888888853 46788999
Q ss_pred EEEEeCCeEEeeCCcccchh
Q psy8397 167 LYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~~ 186 (203)
+++|.+|++++.|+++++..
T Consensus 213 IivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 213 ALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999887653
No 229
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.4e-24 Score=180.77 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=105.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|... ++. .|+.+++.. .+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 84 ~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 84 KVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred heeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 4556665432 333 677765532 12445667778874 456788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~---------------------------------- 205 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ---------------------------------- 205 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH----------------------------------
Confidence 999999999999999999999999999999875 478888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+..+||++++|++|+++..|+++++
T Consensus 206 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 206 ---------QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 46789999999999999999987765
No 230
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.2e-23 Score=180.70 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=104.9
Q ss_pred CCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397 21 HRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 21 ~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~ 92 (203)
...|+.|++.. ...+.++++.+++....++++++||||||||++||+||+.+|+++||||||++||+.++..
T Consensus 74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 45788887642 1236778999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397 93 CVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA 171 (203)
Q Consensus 93 i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~ 171 (203)
+.+.|+++.++ |+|||++||+++ .+..+||++++|+
T Consensus 154 l~~~l~~~~~~~~~tiiivsHd~~-------------------------------------------~~~~~~d~i~~l~ 190 (246)
T cd03237 154 ASKVIRRFAENNEKTAFVVEHDII-------------------------------------------MIDYLADRLIVFE 190 (246)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEEc
Confidence 99999998753 778888888753 3677899999997
Q ss_pred CCeEE--eeCCcccch----hHHHhcCC
Q psy8397 172 EGHCV--YKGSSANTI----PYLQTIGL 193 (203)
Q Consensus 172 ~G~i~--~~g~~~~~~----~~~~~~g~ 193 (203)
++..+ ..++|..+. .+++..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (246)
T cd03237 191 GEPSVNGVANPPQSLRSGMNRFLKNLDI 218 (246)
T ss_pred CCCeeEEEeCCchHHHHHHHHHHHHCCC
Confidence 65433 445555533 46666665
No 231
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.5e-24 Score=183.82 Aligned_cols=133 Identities=26% Similarity=0.235 Sum_probs=107.7
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+.+|... ++.. |+.|++.. .+++.++++.+++. ...++++.+||||||||++||||
T Consensus 106 ~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 106 RRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred ccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 34566666432 2333 77776532 23466778888885 35688999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~--------------------------------- 228 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ--------------------------------- 228 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH---------------------------------
Confidence 9999999999999999999999999999999975 678888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 229 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 229 ----------QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred ----------HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 367899999999999999999887654
No 232
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-23 Score=179.95 Aligned_cols=133 Identities=26% Similarity=0.353 Sum_probs=108.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...|.+|.. .++..+|+.+++.. .+++.++++.+++. +..++++..||||||||++|||||
T Consensus 91 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 91 EVGMVFQQP--NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred ceEEEccCC--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 345666532 34455788776531 13467788889986 356889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++++|||||+|||+.+++.+.+.|.++.+ +.|||++||++.
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~---------------------------------- 213 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ---------------------------------- 213 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH----------------------------------
Confidence 999999999999999999999999999999864 578888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+...||++++|++|+++..|+++++.
T Consensus 214 ---------~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 214 ---------QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred ---------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 367899999999999999999887664
No 233
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=5.5e-24 Score=185.85 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=109.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGR-----------LSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~-----------LSgGqrqrl~iA~aL~ 70 (203)
...+++|... +++ .|+.+++. ..+++.++++.+||....++++.. ||||||||++|||||+
T Consensus 78 ~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 78 AFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred hEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 4566676433 333 47877764 245678889999998888888876 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.++..+.+.|+++. +++|||++||+++
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~----------------------------------- 198 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE----------------------------------- 198 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-----------------------------------
Confidence 9999999999999999999999999999874 4788888888863
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+. .||++++|++|++++.|+|+++..
T Consensus 199 --------~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 199 --------AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred --------HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 244 499999999999999999988763
No 234
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.4e-24 Score=178.79 Aligned_cols=105 Identities=32% Similarity=0.520 Sum_probs=90.5
Q ss_pred HHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 36 DDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 36 ~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.++++.+ ++....++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||+
T Consensus 118 ~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 196 (234)
T cd03251 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHR 196 (234)
T ss_pred HHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 3445555 666677888999999999999999999999999999999999999999999999999864 7888888888
Q ss_pred CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++ .+.. ||++++|++|+++..|+++++.
T Consensus 197 ~~-------------------------------------------~~~~-~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 197 LS-------------------------------------------TIEN-ADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred HH-------------------------------------------HHhh-CCEEEEecCCeEeeeCCHHHHH
Confidence 64 2444 9999999999999999887664
No 235
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=7.7e-24 Score=178.95 Aligned_cols=99 Identities=34% Similarity=0.479 Sum_probs=87.6
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++
T Consensus 128 ~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~------- 199 (238)
T cd03249 128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS------- 199 (238)
T ss_pred ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------
Confidence 44455677889999999999999999999999999999999999999999999999987 7889999999864
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+. .||++++|++|++++.|+++++..
T Consensus 200 ------------------------------------~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 200 ------------------------------------TIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred ------------------------------------HHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 244 799999999999999998776654
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.91 E-value=8.3e-24 Score=176.59 Aligned_cols=125 Identities=26% Similarity=0.409 Sum_probs=99.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL 69 (203)
...|.+|... ++. .|+.|++.. .+++.++++.+++.+..++.+ .+||||||||++||+||
T Consensus 79 ~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 79 NIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred hEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 3556666432 333 588776532 345678888899887766644 69999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.++ .|||++||+++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~---------------------------------- 200 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS---------------------------------- 200 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH----------------------------------
Confidence 9999999999999999999999999999998753 77777777753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+ ++||+++++++|++++.|
T Consensus 201 ---------~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 201 ---------LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred ---------HH-HhCCEEEEEeCCeEeecC
Confidence 23 689999999999987654
No 237
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=191.58 Aligned_cols=137 Identities=25% Similarity=0.387 Sum_probs=117.1
Q ss_pred CceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+-....||.++..+++-.|+..-+ ..++++-++|+.+|+.+ ..+.++.+|||||||||+||.||
T Consensus 93 ~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL 172 (534)
T COG4172 93 NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL 172 (534)
T ss_pred cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHH
Confidence 445667888887777766665522 23668889999999964 46889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
+.+|++||-||||++||...+.+++++|++|+++ |.+++++|||+.
T Consensus 173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~--------------------------------- 219 (534)
T COG4172 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG--------------------------------- 219 (534)
T ss_pred cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH---------------------------------
Confidence 9999999999999999999999999999999875 777777777763
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.+++|||+||.+|+++..|+.+.++
T Consensus 220 ----------iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 220 ----------IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred ----------HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 478899999999999999999998887
No 238
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=181.74 Aligned_cols=132 Identities=24% Similarity=0.220 Sum_probs=107.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
+..+.+|... ++. .|+.+++.. .+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 102 ~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 102 HIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred ceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 4566666432 223 478776532 23456678888884 457889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~---------------------------------- 223 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ---------------------------------- 223 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH----------------------------------
Confidence 99999999999999999999999999999986 4678888888764
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|++++.|+++++.
T Consensus 224 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 224 ---------QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred ---------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 367899999999999999999987764
No 239
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=1.3e-23 Score=172.22 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=91.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
+..+.+|.....++ ..|+.|++.. .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 69 ~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 147 (190)
T TIGR01166 69 RVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD 147 (190)
T ss_pred hEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 45666765321232 3578776532 2356788999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
++||||||+|||+.+++.+++.|++++++|.|||++||++++
T Consensus 148 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 148 VLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999999999999998889999999999753
No 240
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=1.2e-23 Score=220.91 Aligned_cols=134 Identities=24% Similarity=0.356 Sum_probs=116.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+++|.. .++..+||.|++.. +++++++++.+||.+..++++++|||||||||+||+||+.+|+
T Consensus 1004 ~IG~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk 1081 (2272)
T TIGR01257 1004 SLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081 (2272)
T ss_pred cEEEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 466788753 34567999997642 2457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.+++.+++.|++++ +|+|||++||+++
T Consensus 1082 VLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd--------------------------------------- 1121 (2272)
T TIGR01257 1082 VVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD--------------------------------------- 1121 (2272)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH---------------------------------------
Confidence 999999999999999999999999985 5889999998875
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
++..+|||+++|++|+++..|++..+.+
T Consensus 1122 ----ea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1122 ----EADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred ----HHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 3678999999999999999999887754
No 241
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=197.19 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=107.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..|.+|.....+...+|+.+++.. .+++.++++.+|+. +..++++++||||||||++||++|+.+|++||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 455665433234456788886532 34678899999994 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 159 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~ 159 (203)
|||+|||+.++..+++.|+++ +.|||++||+++ .
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-------------------------------------------~ 497 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-------------------------------------------F 497 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-------------------------------------------H
Confidence 999999999999999999876 348888888853 4
Q ss_pred HHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397 160 IFEMVDHLYVIAEGHCV-YKGSSANT 184 (203)
Q Consensus 160 i~~~~d~v~vl~~G~i~-~~g~~~~~ 184 (203)
+..+||++++|++|+++ +.|++.++
T Consensus 498 ~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 498 VSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 67889999999999997 88877654
No 242
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=181.28 Aligned_cols=132 Identities=23% Similarity=0.212 Sum_probs=105.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+.+|... ++. .|+.+++.. .+++.++++.+++. ...++++.+||||||||++|||||+.
T Consensus 92 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 92 RIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred hEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 3455565432 223 377775432 23455677877774 35688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~------------------------------------ 211 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ------------------------------------ 211 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH------------------------------------
Confidence 9999999999999999999999999999875 478888888754
Q ss_pred eecCchhHHHhhcCEEEEEe---------CCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIA---------EGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~---------~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|+ +|++++.|+++++.
T Consensus 212 -------~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 212 -------QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred -------HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 4788999999998 89999999988774
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=7.5e-24 Score=184.01 Aligned_cols=113 Identities=29% Similarity=0.393 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397 30 DTIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI 107 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv 107 (203)
+..+++.++|+.+|+.. .+++++.+|||||+||++|||||+.+|+++++|||+|+||...+.++.++++.++++ |.|.
T Consensus 84 ~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~ 163 (268)
T COG4608 84 ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY 163 (268)
T ss_pred HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE
Confidence 35678999999999974 889999999999999999999999999999999999999999999999999999875 7777
Q ss_pred EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+++|||++ .+..+|||+.||..|+|+..|+.++++
T Consensus 164 lFIsHDL~-------------------------------------------vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 164 LFISHDLS-------------------------------------------VVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred EEEEEEHH-------------------------------------------hhhhhcccEEEEecCceeEecCHHHHh
Confidence 77777764 477899999999999999999998876
No 244
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.5e-23 Score=176.22 Aligned_cols=100 Identities=29% Similarity=0.441 Sum_probs=89.3
Q ss_pred HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 36 DDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 36 ~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
.++++.+++.+ ..++++.+||||||||++||++|+.+| ++|||||||+|||+..+..+++.|++++++|.|+|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 56889999986 589999999999999999999999998 599999999999999999999999999866778888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeC
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKG 179 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g 179 (203)
+++ .+ .+||++++| ++|+|+++|
T Consensus 198 ~~~-------------------------------------------~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 198 DED-------------------------------------------TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CHH-------------------------------------------HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 753 23 589999999 899999876
No 245
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=182.57 Aligned_cols=132 Identities=23% Similarity=0.247 Sum_probs=104.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcC----CcccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIG----LVLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~----L~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.+++.. .+.+.++++.++ +.+..++++.+||||||||++|||+|
T Consensus 106 ~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 106 NVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 4566666432 333 478776531 122445566664 44557889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~---------------------------------- 227 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ---------------------------------- 227 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH----------------------------------
Confidence 999999999999999999999999999999875 678888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 228 ---------~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 228 ---------QAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999887664
No 246
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=179.50 Aligned_cols=132 Identities=22% Similarity=0.239 Sum_probs=105.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+.+|... ++. .|+.|++.. .+++.++++.+++. ...++++.+||||||||++|||+|
T Consensus 88 ~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 88 KIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred eEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 4556666432 333 377776532 22456677888774 346889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~---------------------------------- 209 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ---------------------------------- 209 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH----------------------------------
Confidence 999999999999999999999999999999875 578888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 210 ---------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 210 ---------QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred ---------HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 367899999999999999999987654
No 247
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=178.76 Aligned_cols=109 Identities=28% Similarity=0.350 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 33 GLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 33 ~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
+++.++++.+++. +..++++.+|||||+||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tii 214 (265)
T PRK14252 136 ERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTIL 214 (265)
T ss_pred HHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEE
Confidence 4556777888763 456888999999999999999999999999999999999999999999999999875 57888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++||+++ .+.++||++++|++|+++..|+.+++.
T Consensus 215 ivth~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 215 IVTHNMQ-------------------------------------------QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEecCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8888753 367899999999999999999887654
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=178.45 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=107.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a 68 (203)
....+++|... ++. .|+.+++.. .+++.++++.+|+. ...++++.+||||||||++||||
T Consensus 84 ~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 160 (250)
T PRK14266 84 KKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160 (250)
T ss_pred hheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 34666776432 233 367665431 23466778888874 34688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|+|||||+|||+.++..+.+.|+++.+ |.|||++||+++
T Consensus 161 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~--------------------------------- 206 (250)
T PRK14266 161 IAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ--------------------------------- 206 (250)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH---------------------------------
Confidence 9999999999999999999999999999999864 788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+...||+++++++|++++.|+++++.
T Consensus 207 ----------~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 207 ----------QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred ----------HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 367889999999999999999987763
No 249
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=2.1e-23 Score=174.28 Aligned_cols=126 Identities=22% Similarity=0.202 Sum_probs=99.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|... ++. .|+.|++.. .+++.+.++.+++.+.. +.++..||||||||++|||+|+
T Consensus 79 ~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 79 RISIIPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred hEEEECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 4566666433 333 477776532 34566667777765543 4688999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~----------------------------------- 199 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD----------------------------------- 199 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-----------------------------------
Confidence 99999999999999999999999999999864 578888888764
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
.+. .||++++|++|++++.|+
T Consensus 200 --------~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 200 --------TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred --------HHh-hCCEEEEEECCeEEecCC
Confidence 244 499999999999998875
No 250
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=181.81 Aligned_cols=132 Identities=26% Similarity=0.329 Sum_probs=106.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...|.+|... +++ .|+.+++.. ..++.++++.+++.. ..++.+.+||||||||++|||+|
T Consensus 102 ~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 102 RVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred heEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3455665432 233 677775532 123456788888863 45788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~---------------------------------- 223 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA---------------------------------- 223 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence 999999999999999999999999999999875 478888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+.++||++++|++|+++..|+++++.
T Consensus 224 ---------~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 224 ---------QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 467899999999999999999988764
No 251
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.3e-23 Score=176.31 Aligned_cols=135 Identities=21% Similarity=0.394 Sum_probs=113.1
Q ss_pred ccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc------CCCEE
Q psy8397 17 AQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID------NPPIM 76 (203)
Q Consensus 17 ~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~------~P~vL 76 (203)
..+.+++||.|+..+ .+.++++|...++..+..+...+|||||||||.+||+|++ ++++|
T Consensus 84 s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 84 SSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred cccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 345677888887643 2346788999999999999999999999999999999986 44589
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
||||||++||+..+...++..++++++|..|+++-||++
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN----------------------------------------- 202 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN----------------------------------------- 202 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-----------------------------------------
Confidence 999999999999999999999999977777777777765
Q ss_pred hhHHHhhcCEEEEEeCCeEEeeCCcccchh--HH-HhcCCC
Q psy8397 157 SATIFEMVDHLYVIAEGHCVYKGSSANTIP--YL-QTIGLH 194 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~~-~~~g~~ 194 (203)
....+||||++|.+||+++.|+|.++.. -+ .-+|..
T Consensus 203 --LAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~ 241 (259)
T COG4559 203 --LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGAD 241 (259)
T ss_pred --HHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCc
Confidence 3578999999999999999999998863 23 345554
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=4.7e-23 Score=170.39 Aligned_cols=111 Identities=45% Similarity=0.743 Sum_probs=88.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~ 87 (203)
..+++|.. .++..+|+.|+.....+. .+||||||||++|||||+.+|+++||||||+|||+
T Consensus 84 i~~~~q~~--~~~~~~t~~~~i~~~~~~-----------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 84 IGYVPQDD--ILHPTLTVRETLMFAAKL-----------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred EEEccCcc--cCCCCCcHHHHHHHHHHh-----------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 45555542 344567888765432111 18999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE
Q psy8397 88 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 167 (203)
Q Consensus 88 ~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v 167 (203)
.+++.+++.|+++.++|+|+|++||+++. .+..+||++
T Consensus 145 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~------------------------------------------~~~~~~d~v 182 (194)
T cd03213 145 SSALQVMSLLRRLADTGRTIICSIHQPSS------------------------------------------EIFELFDKL 182 (194)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCchH------------------------------------------HHHHhcCEE
Confidence 99999999999998668888888887631 356789999
Q ss_pred EEEeCCeEEeeC
Q psy8397 168 YVIAEGHCVYKG 179 (203)
Q Consensus 168 ~vl~~G~i~~~g 179 (203)
++|++|++++.|
T Consensus 183 ~~l~~G~i~~~~ 194 (194)
T cd03213 183 LLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCEEEecC
Confidence 999999998754
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=4.5e-23 Score=172.51 Aligned_cols=106 Identities=28% Similarity=0.372 Sum_probs=89.5
Q ss_pred eeEEEeeecccccCCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL 78 (203)
..|.+|. ..++..+|+.|+... .+++.++++.+++.+..++++.+||||||||++|||+++.+|+++||
T Consensus 84 i~~~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 84 MAYLGHL--PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred eEEeecC--cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4455543 234555788876532 24567889999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
||||+|||+.+++.+++.|+++.++|.|+|++||+++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 9999999999999999999999877888888888864
No 254
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=5.8e-23 Score=178.63 Aligned_cols=117 Identities=28% Similarity=0.429 Sum_probs=101.1
Q ss_pred CCCCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHH
Q psy8397 21 HRISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN---PPIMFLDEPTTGLDSNST 90 (203)
Q Consensus 21 ~~~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~---P~vLlLDEPt~gLD~~~~ 90 (203)
..+|+.|..+. .+++.++++.+||.. ..++++.+|||||+||+.||++|+.+ |++++|||||+|||+..+
T Consensus 129 ~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~ 208 (261)
T cd03271 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV 208 (261)
T ss_pred hcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence 45788877643 245677899999987 58999999999999999999999996 799999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 91 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 91 ~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
..+++.|+++.++|.|||++||+++ .+ +.||+++.|
T Consensus 209 ~~l~~~L~~l~~~g~tvIiitH~~~-------------------------------------------~i-~~aD~ii~L 244 (261)
T cd03271 209 KKLLEVLQRLVDKGNTVVVIEHNLD-------------------------------------------VI-KCADWIIDL 244 (261)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEe
Confidence 9999999999877888888888863 23 469999999
Q ss_pred ------eCCeEEeeCCc
Q psy8397 171 ------AEGHCVYKGSS 181 (203)
Q Consensus 171 ------~~G~i~~~g~~ 181 (203)
++|++++.|+|
T Consensus 245 gp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 245 GPEGGDGGGQVVASGTP 261 (261)
T ss_pred cCCcCCCCCEEEEeCCC
Confidence 89999999975
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.4e-23 Score=169.59 Aligned_cols=112 Identities=46% Similarity=0.680 Sum_probs=90.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
...|.+|.. .++..+|+.+++..... ++ +|||||+||++|||||+.+|++|+|||||+|||
T Consensus 80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~----~~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD 140 (192)
T cd03232 80 STGYVEQQD--VHSPNLTVREALRFSAL----LR-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140 (192)
T ss_pred ceEEecccC--ccccCCcHHHHHHHHHH----Hh-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence 345555532 34566888887553211 10 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.++..+++.|++++++|.|||++||++++ .+...||+
T Consensus 141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~------------------------------------------~~~~~~d~ 178 (192)
T cd03232 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSA------------------------------------------SIFEKFDR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEcCChH------------------------------------------HHHhhCCE
Confidence 999999999999988668888888888641 25678999
Q ss_pred EEEEeC-CeEEeeC
Q psy8397 167 LYVIAE-GHCVYKG 179 (203)
Q Consensus 167 v~vl~~-G~i~~~g 179 (203)
+++|++ |++++.|
T Consensus 179 i~~l~~~g~i~~~g 192 (192)
T cd03232 179 LLLLKRGGKTVYFG 192 (192)
T ss_pred EEEEcCCCeEEeCC
Confidence 999998 9998865
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=2.1e-23 Score=193.60 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEE
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCT 110 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~ 110 (203)
+++.++++.+||.+ ..++++++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++| .|||++
T Consensus 379 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458 (490)
T ss_pred HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46788999999987 8899999999999999999999999999999999999999999999999999998664 468888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh-hcCEEEEEeCCeEEeeC
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE-MVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~-~~d~v~vl~~G~i~~~g 179 (203)
||+++ .+.. +||++++|++|++++.-
T Consensus 459 sHd~~-------------------------------------------~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 459 SHHAE-------------------------------------------DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred ecchh-------------------------------------------hhhhhhheeEEEecCCceEEee
Confidence 88864 2455 69999999999987653
No 257
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=175.39 Aligned_cols=98 Identities=29% Similarity=0.470 Sum_probs=84.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++....++++.+||||||||++||++|+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||+++
T Consensus 128 ~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~------- 199 (229)
T cd03254 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS------- 199 (229)
T ss_pred cccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-------
Confidence 34444566789999999999999999999999999999999999999999999999985 4788888888864
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+.+++.
T Consensus 200 ------------------------------------~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 200 ------------------------------------TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred ------------------------------------HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 23 359999999999999988776543
No 258
>KOG0065|consensus
Probab=99.90 E-value=8.4e-25 Score=219.16 Aligned_cols=130 Identities=43% Similarity=0.758 Sum_probs=116.5
Q ss_pred HHHHHHHHHHcCCcccccccCCC----CCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~----LSgGqrqrl~iA~aL~~~P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~t 106 (203)
.+.|+++++.++|.++++.-|+. ||.+||||+.||..|+.+| .+|||||||||||..++..+++++|+++..|+|
T Consensus 903 ~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 903 YEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 47899999999999999999987 9999999999999999999 899999999999999999999999999977777
Q ss_pred EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe-CCeEEeeCCccc--
Q psy8397 107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA-EGHCVYKGSSAN-- 183 (203)
Q Consensus 107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~-~G~i~~~g~~~~-- 183 (203)
||||.|+|+ ..+++.+|++++|+ .|+++|.|++.+
T Consensus 983 IlCTIHQPS------------------------------------------~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 983 ILCTIHQPS------------------------------------------IDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EEEEecCCc------------------------------------------HHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 777777765 46788899999888 689999999864
Q ss_pred --chhHHHhcC-CCCCCCCCCCC
Q psy8397 184 --TIPYLQTIG-LHCPQYHNPAD 203 (203)
Q Consensus 184 --~~~~~~~~g-~~~p~~~~~~d 203 (203)
+++||++.| ..||.-.||||
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~ 1043 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAE 1043 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHH
Confidence 567999986 89999889996
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=3.6e-23 Score=171.63 Aligned_cols=93 Identities=26% Similarity=0.396 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
..+|||||+||++|||+|+.+|++++|||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~---------------- 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR---------------- 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH----------------
Confidence 4689999999999999999999999999999999999999999999999866788888888753
Q ss_pred hhHHHHHHHHhhhCCceEEEeecCchhHHHh-hcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFE-MVDHLYVIAEGHCVYKGSSANTIPYL 188 (203)
Q Consensus 132 ~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~-~~d~v~vl~~G~i~~~g~~~~~~~~~ 188 (203)
.+.. +||++++|++|++++.| +.++...+
T Consensus 166 ---------------------------~~~~~~~d~i~~l~~G~i~~~~-~~~~~~~~ 195 (200)
T cd03217 166 ---------------------------LLDYIKPDRVHVLYDGRIVKSG-DKELALEI 195 (200)
T ss_pred ---------------------------HHHHhhCCEEEEEECCEEEEEc-cHHHHhhh
Confidence 3555 79999999999999998 44454433
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=3.1e-23 Score=169.49 Aligned_cols=106 Identities=24% Similarity=0.440 Sum_probs=85.2
Q ss_pred ceeEEEeeec-ccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397 7 GTIWCWQIIS-AQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85 (203)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL 85 (203)
...+++|... ..+.+.+|+.|++..... ||||||||++||+||+.+|++|||||||+||
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------LS~G~~qrl~la~al~~~p~llllDEP~~~L 135 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSSL--------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGV 135 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHhh--------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCC
Confidence 3555565432 224556788776433211 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397 86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165 (203)
Q Consensus 86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d 165 (203)
|+.+++.+++.++++.++|.|+|++||+++ .+.++||
T Consensus 136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~-------------------------------------------~~~~~~d 172 (182)
T cd03215 136 DVGAKAEIYRLIRELADAGKAVLLISSELD-------------------------------------------ELLGLCD 172 (182)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------HHHHhCC
Confidence 999999999999999766788888888753 4678999
Q ss_pred EEEEEeCCeE
Q psy8397 166 HLYVIAEGHC 175 (203)
Q Consensus 166 ~v~vl~~G~i 175 (203)
+++++++|++
T Consensus 173 ~v~~l~~G~i 182 (182)
T cd03215 173 RILVMYEGRI 182 (182)
T ss_pred EEEEecCCcC
Confidence 9999999974
No 261
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=4.3e-23 Score=173.21 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=104.8
Q ss_pred cccCCCCHhHHHhHH--------H-HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy8397 18 QYSHRISVDDILDTI--------G-LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88 (203)
Q Consensus 18 ~~~~~~~~~~~~~~~--------~-~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~ 88 (203)
.+++.+|+.|++... + ....+.+.+++....+++++.||||||||++||+||+.+|+++||||||+++|+.
T Consensus 59 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 59 FILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 355678988876431 1 1233446678888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEE
Q psy8397 89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLY 168 (203)
Q Consensus 89 ~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~ 168 (203)
+++.+++.+.+..+ +.|+|++||++. .+..+||+++
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-------------------------------------------~~~~~~d~i~ 174 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-------------------------------------------LIKEHCHAFG 174 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-------------------------------------------HHHHhcCeeE
Confidence 99999998765432 356777777753 3677999999
Q ss_pred EEeCCeEEeeCCcccchhHHHhc
Q psy8397 169 VIAEGHCVYKGSSANTIPYLQTI 191 (203)
Q Consensus 169 vl~~G~i~~~g~~~~~~~~~~~~ 191 (203)
+|++|++++.|+.++...+++.+
T Consensus 175 ~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 175 VLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred EEECCeEEEeCCHHHHHHHHHHH
Confidence 99999999999998887665544
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.3e-23 Score=175.58 Aligned_cols=98 Identities=34% Similarity=0.574 Sum_probs=85.4
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++
T Consensus 126 ~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~------- 197 (236)
T cd03253 126 GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS------- 197 (236)
T ss_pred cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-------
Confidence 444456677889999999999999999999999999999999999999999999999876 888888888864
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+. .||++++|++|++++.|+++++.
T Consensus 198 ------------------------------------~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 198 ------------------------------------TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred ------------------------------------HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 243 49999999999999998877654
No 263
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.6e-24 Score=177.49 Aligned_cols=117 Identities=28% Similarity=0.436 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC 109 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~ 109 (203)
.+..+.++++.++|.+..+++..+||||||||..+|..++++.+.+|||||.++||.+....+++.|++++++ |+||++
T Consensus 112 D~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi 191 (252)
T COG4604 112 DRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV 191 (252)
T ss_pred HHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4667899999999999999999999999999999999999999999999999999999999999999999964 555555
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh--H
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP--Y 187 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~ 187 (203)
+-|| ++ ++..++|.|+-+++|+++..|+|++++. .
T Consensus 192 VlHD------------------------------------------IN-fAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 192 VLHD------------------------------------------IN-FASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred EEec------------------------------------------cc-HHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 5555 44 5788999999999999999999999873 4
Q ss_pred HHh
Q psy8397 188 LQT 190 (203)
Q Consensus 188 ~~~ 190 (203)
+++
T Consensus 229 L~e 231 (252)
T COG4604 229 LSE 231 (252)
T ss_pred HHH
Confidence 544
No 264
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.90 E-value=6.7e-23 Score=171.76 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=87.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
+..+.+|.. .++..+|+.|++. ..+++.++++.+|+.+ ..++++.+||||||||++||+||+.+|
T Consensus 91 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p 168 (224)
T TIGR02324 91 TIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY 168 (224)
T ss_pred ceEEEeccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 456667643 2445677777642 1346678899999976 458899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
++++|||||+|||+.++..+.+.|+++.++|.|||++||++
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 169 PILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999999999999999999986688888888885
No 265
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=6e-23 Score=172.94 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=87.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
+..+.+|... ++. .|+.|++.. .+++.++++.+++. ...++++.+|||||+||++||+||+.+|++
T Consensus 82 ~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 82 QVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred ccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 4556666532 333 488876531 23567899999996 578999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
++|||||+|||+.++..+.+.|+++.++ |.|||++||+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 9999999999999999999999998754 778888888764
No 266
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=5.7e-23 Score=170.53 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=86.1
Q ss_pred ccCCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy8397 19 YSHRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89 (203)
Q Consensus 19 ~~~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~ 89 (203)
+...+|+.|++.. .++++++++.+|+.+..++++.+||||||||++||+||+.+|++++|||||+|||+.+
T Consensus 85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 164 (204)
T PRK13538 85 IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164 (204)
T ss_pred cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4455788887532 3467889999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 90 TNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 90 ~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+..+++.|++++++|.|||++||+++
T Consensus 165 ~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 165 VARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecChh
Confidence 99999999999877889999999875
No 267
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-23 Score=182.52 Aligned_cols=108 Identities=27% Similarity=0.364 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 34 LVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 34 ~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
++.++++.+++. ...++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||+
T Consensus 176 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiii 254 (305)
T PRK14264 176 LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVV 254 (305)
T ss_pred HHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 467788888873 456888999999999999999999999999999999999999999999999999875 377888
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE-EEEeCCeEEeeCCcccch
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL-YVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v-~vl~~G~i~~~g~~~~~~ 185 (203)
+||+++ .+..+||++ +++++|++++.|+++++.
T Consensus 255 vtH~~~-------------------------------------------~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 255 VTHNMQ-------------------------------------------QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEcCHH-------------------------------------------HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 888753 367899997 577999999999987654
No 268
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.5e-22 Score=168.40 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=91.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
...|++|. ..++..+|+.+++....... .++++..||||||||++||+||+.+|++|||||||+|||
T Consensus 84 ~i~~~~q~--~~~~~~~tv~~~l~~~~~~~-----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD 150 (202)
T cd03233 84 EIIYVSEE--DVHFPTLTVRETLDFALRCK-----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150 (202)
T ss_pred eEEEEecc--cccCCCCcHHHHHhhhhhhc-----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCC
Confidence 34566653 23456689988765432211 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397 87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d 165 (203)
+.+++.+++.|+++.++ +.|+|+++|.. ...+.++||
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~t~ii~~~h~------------------------------------------~~~~~~~~d 188 (202)
T cd03233 151 SSTALEILKCIRTMADVLKTTTFVSLYQA------------------------------------------SDEIYDLFD 188 (202)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEcCC------------------------------------------HHHHHHhCC
Confidence 99999999999999754 55555544432 124678999
Q ss_pred EEEEEeCCeEEeeC
Q psy8397 166 HLYVIAEGHCVYKG 179 (203)
Q Consensus 166 ~v~vl~~G~i~~~g 179 (203)
++++|++|++++.|
T Consensus 189 ~i~~l~~G~i~~~g 202 (202)
T cd03233 189 KVLVLYEGRQIYYG 202 (202)
T ss_pred eEEEEECCEEEecC
Confidence 99999999998754
No 269
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.89 E-value=8.9e-23 Score=169.20 Aligned_cols=107 Identities=27% Similarity=0.371 Sum_probs=90.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE 80 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE 80 (203)
+..|.+|. ..+....|+.|+... .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||
T Consensus 74 ~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 74 GLLYLGHA--PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred heEEeccc--cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34455543 223455788887532 4567889999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 81 Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
||+|||+.+++.+++.|+++.++|.|+|++||++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 99999999999999999998877888888888864
No 270
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.6e-23 Score=191.90 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.++++.+|+... .++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|
T Consensus 133 ~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivs 209 (530)
T PRK15064 133 ARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIIS 209 (530)
T ss_pred HHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEe
Confidence 457788999999764 3578999999999999999999999999999999999999999999998863 478888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE-EeeCCcccch
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC-VYKGSSANTI 185 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i-~~~g~~~~~~ 185 (203)
|+++ .+..+||++++|++|++ ++.|+++++.
T Consensus 210 Hd~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 210 HDRH-------------------------------------------FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CCHH-------------------------------------------HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 8864 46789999999999999 5888887553
No 271
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6.4e-23 Score=191.30 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=119.9
Q ss_pred CCCCceeEEEeeecccccCCCCHhHHHh----------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397 3 DSNHGTIWCWQIISAQYSHRISVDDILD----------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66 (203)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA 66 (203)
+.++|....||..+ +.+.+||-|++. .++++.++|+.+|+....++++++||.||||.|+||
T Consensus 80 A~~~GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 80 ALAAGIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHhCCcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 34678888888766 468899998762 356788899999986559999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
|||..++++|+|||||+.|+......+++.+++|+++|.+||++||.++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~------------------------------- 206 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD------------------------------- 206 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-------------------------------
Confidence 9999999999999999999999999999999999988999999999875
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCc-ccc
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSS-ANT 184 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~-~~~ 184 (203)
+++++|||+.||++|+++..++. .++
T Consensus 207 ------------Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 207 ------------EVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred ------------HHHHhcCEEEEEeCCEEeeecccccCC
Confidence 48999999999999999988873 443
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.2e-22 Score=168.49 Aligned_cols=124 Identities=20% Similarity=0.220 Sum_probs=95.3
Q ss_pred CceeEEEeeecccccCCCCHhHHHhHHH--HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDTIG--LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~ 83 (203)
.+..+++|.. .++. .|+.+++.... ...++.+.++ .++++..|||||+||++|||+|+.+|+++||||||+
T Consensus 82 ~~i~~v~q~~--~~~~-~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 82 SSLTIIPQDP--TLFS-GTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred hhEEEEecCC--cccC-ccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 4566777653 2333 48887653210 1122333333 467899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh
Q psy8397 84 GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM 163 (203)
Q Consensus 84 gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~ 163 (203)
|||+.++..+++.|+++. +|.|+|++||+++ .+..
T Consensus 155 ~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-------------------------------------------~~~~- 189 (207)
T cd03369 155 SIDYATDALIQKTIREEF-TNSTILTIAHRLR-------------------------------------------TIID- 189 (207)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------------------------------------------HHhh-
Confidence 999999999999999985 4788888888864 2444
Q ss_pred cCEEEEEeCCeEEeeCCc
Q psy8397 164 VDHLYVIAEGHCVYKGSS 181 (203)
Q Consensus 164 ~d~v~vl~~G~i~~~g~~ 181 (203)
||++++|++|+++..|++
T Consensus 190 ~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 190 YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEEECCEEEecCCC
Confidence 999999999999888764
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=8.5e-23 Score=194.87 Aligned_cols=132 Identities=22% Similarity=0.290 Sum_probs=107.4
Q ss_pred cCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397 20 SHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 20 ~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~ 92 (203)
...+||.+++.. ...+.++++.++|.+..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 412 ~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~ 491 (590)
T PRK13409 412 DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491 (590)
T ss_pred CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 355788887643 2346789999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397 93 CVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA 171 (203)
Q Consensus 93 i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~ 171 (203)
+++.|++++++ |.|||++|||++ .+..+||++++++
T Consensus 492 l~~~l~~l~~~~g~tviivsHD~~-------------------------------------------~~~~~aDrvivl~ 528 (590)
T PRK13409 492 VAKAIRRIAEEREATALVVDHDIY-------------------------------------------MIDYISDRLMVFE 528 (590)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEEc
Confidence 99999999764 777777777753 4678999999996
Q ss_pred CCeEEeeCCcccc-------hhHHHhcCCCC
Q psy8397 172 EGHCVYKGSSANT-------IPYLQTIGLHC 195 (203)
Q Consensus 172 ~G~i~~~g~~~~~-------~~~~~~~g~~~ 195 (203)
+ ++...|....- -.+++.+++.+
T Consensus 529 ~-~~~~~g~~~~~~~~~~~~~~~l~~~~i~~ 558 (590)
T PRK13409 529 G-EPGKHGHASGPMDMREGMNRFLKELGITF 558 (590)
T ss_pred C-cceeeeecCCchhHHHHHHHHHHHcCCEE
Confidence 4 77766654332 13566666653
No 274
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.9e-23 Score=180.15 Aligned_cols=113 Identities=28% Similarity=0.389 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC 109 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~ 109 (203)
..++.+.+.+.++|+...+.++..||-|||.|+.||.+|+++|+||||||||-|||...+..+.+++++..++ ++||++
T Consensus 133 F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll 212 (325)
T COG4586 133 FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212 (325)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence 5778888999999999999999999999999999999999999999999999999999999999999999864 888888
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+||+++ .+..+|+||++|+.|+++++|+.+++..
T Consensus 213 TTH~~~-------------------------------------------di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 213 TTHIFD-------------------------------------------DIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred Eecchh-------------------------------------------hHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 888875 3789999999999999999999887754
No 275
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=1e-22 Score=192.58 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=100.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-------cccccC----CCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-------SKHTLC----GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-------~~~~~v----~~LSgGqrqrl~iA~aL 69 (203)
...+++|.. .+ ..-|+.|++.. .+++.++++..++.+ -.++.+ .+||||||||++|||||
T Consensus 424 ~i~~v~Q~~--~L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 424 HLSWVGQNP--QL-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred heEEecCCC--cC-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 345666532 23 33477776532 345666666655433 234444 46999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||++||+.+.+.+.+.|+++. +++|+|++||.++
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~---------------------------------- 545 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE---------------------------------- 545 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH----------------------------------
Confidence 99999999999999999999999999998875 4778888888763
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|+++++|+++..|+.+++.
T Consensus 546 ----------~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 546 ----------DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred ----------HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 34679999999999999999988876
No 276
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=3.1e-22 Score=192.52 Aligned_cols=134 Identities=24% Similarity=0.396 Sum_probs=114.0
Q ss_pred CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
.+..+++|.. .+++.+|+.|+.. ..+++.++++.+||.+..++++++|||||+||++|||||+.+|
T Consensus 86 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 86 EHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred ccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 4667888764 3455677776543 2346788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|+|||||+|||+.+++.+.+.++++.++|.|+|++||+++
T Consensus 164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-------------------------------------- 205 (648)
T PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-------------------------------------- 205 (648)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------------------------------------
Confidence 999999999999999999999999999866888888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|++++..
T Consensus 206 -----~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 206 -----VA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred -----HH-HhCCEEEEEECCEEEeecCccccc
Confidence 23 469999999999999999998765
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=2.3e-22 Score=165.51 Aligned_cols=80 Identities=31% Similarity=0.468 Sum_probs=72.9
Q ss_pred HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 36 DDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 36 ~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
.++++.++|.. ..++++.+||||||||++||++|+.+ |+++||||||+|||+.+++.+.+.|+++.+.|.|||++||
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 46789999986 48999999999999999999999999 9999999999999999999999999998766888888888
Q ss_pred CCC
Q psy8397 113 QPS 115 (203)
Q Consensus 113 ~~~ 115 (203)
+++
T Consensus 148 ~~~ 150 (176)
T cd03238 148 NLD 150 (176)
T ss_pred CHH
Confidence 753
No 278
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.7e-22 Score=163.91 Aligned_cols=78 Identities=35% Similarity=0.639 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ 134 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~ 134 (203)
|||||+||++|||||+.+|++++|||||+|||+.++..+++.|+++.++|.|+|++||+++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~------------------- 156 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE------------------- 156 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-------------------
Confidence 9999999999999999999999999999999999999999999999866778888888753
Q ss_pred HHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397 135 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 135 ~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i 175 (203)
.+..+||+++++++|++
T Consensus 157 ------------------------~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 157 ------------------------EAERLCDRVAILNNGRI 173 (173)
T ss_pred ------------------------HHHHhCCEEEEEeCCCC
Confidence 36678999999999864
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.89 E-value=1e-22 Score=170.85 Aligned_cols=80 Identities=34% Similarity=0.498 Sum_probs=71.9
Q ss_pred HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 35 VDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 35 v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+.++++.+ |+....++++.+||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+ +.|+|++||
T Consensus 129 ~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh 207 (226)
T cd03248 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAH 207 (226)
T ss_pred cHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 35677778 788888999999999999999999999999999999999999999999999999999864 578888888
Q ss_pred CCC
Q psy8397 113 QPS 115 (203)
Q Consensus 113 ~~~ 115 (203)
+++
T Consensus 208 ~~~ 210 (226)
T cd03248 208 RLS 210 (226)
T ss_pred CHH
Confidence 764
No 280
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.6e-22 Score=173.69 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=85.2
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++....+.++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.++++. ++.|||++||++++
T Consensus 145 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~------ 217 (257)
T cd03288 145 GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST------ 217 (257)
T ss_pred ccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH------
Confidence 45555566778999999999999999999999999999999999999999999999875 47888888888642
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+. .||++++|++|+++..|+++++.
T Consensus 218 -------------------------------------~~-~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 218 -------------------------------------IL-DADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred -------------------------------------HH-hCCEEEEEECCEEEEeCCHHHHH
Confidence 33 39999999999999999987764
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=2.4e-22 Score=189.90 Aligned_cols=103 Identities=21% Similarity=0.407 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
++.++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||+
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd 219 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHD 219 (556)
T ss_pred HHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCC
Confidence 4566788889864 789999999999999999999999999999999999999999999999998863 488888888
Q ss_pred CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397 114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN 183 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~ 183 (203)
++ .+..+||++++|++|+++ +.|+.++
T Consensus 220 ~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 220 RY-------------------------------------------FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred HH-------------------------------------------HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 64 467899999999999986 7887665
No 282
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.6e-22 Score=174.72 Aligned_cols=84 Identities=25% Similarity=0.426 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
...+.++++.+|+.+..++++.+||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++.++|+|||++|
T Consensus 117 ~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45678899999999889999999999999999999999999999999999999999999999999999987678888888
Q ss_pred cCCC
Q psy8397 112 HQPS 115 (203)
Q Consensus 112 H~~~ 115 (203)
|+++
T Consensus 197 Hd~~ 200 (255)
T cd03236 197 HDLA 200 (255)
T ss_pred CCHH
Confidence 8753
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=193.47 Aligned_cols=109 Identities=27% Similarity=0.428 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
..++.++|+.+++. ...+++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +| |||++
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~v 483 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVV 483 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEE
Confidence 35678899999996 4789999999999999999999999999999999999999999999999999987 34 88888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccchh
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANTIP 186 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~~~ 186 (203)
|||+. .+..+||+++++.+|+++ +.|++++...
T Consensus 484 SHd~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 484 SHDRH-------------------------------------------LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred eCCHH-------------------------------------------HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 88853 477899999999999997 8898887643
No 284
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=2.6e-22 Score=167.13 Aligned_cols=98 Identities=30% Similarity=0.458 Sum_probs=87.6
Q ss_pred ccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy8397 19 YSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90 (203)
Q Consensus 19 ~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~ 90 (203)
+...+|+.+++.. .+++.++++.+|+.+..++++++||||||||++||+||+.+|++|||||||+|||+.++
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 163 (207)
T PRK13539 84 MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163 (207)
T ss_pred CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3455788886532 34578899999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 91 NQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 91 ~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
..+++.|++++++|.|||++||++++
T Consensus 164 ~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 164 ALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 99999999988789999999999875
No 285
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=3.6e-22 Score=162.51 Aligned_cols=83 Identities=31% Similarity=0.621 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
+..||||||||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. +|.|||++||+++
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~---------------- 158 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT---------------- 158 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH----------------
Confidence 78899999999999999999999999999999999999999999999985 4788888888864
Q ss_pred hhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 132 ~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+ ..||++++|++|++++.|
T Consensus 159 ---------------------------~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 159 ---------------------------GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred ---------------------------HH-HhCCEEEEEECCEEEecC
Confidence 24 469999999999998754
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=4.8e-22 Score=186.89 Aligned_cols=99 Identities=30% Similarity=0.511 Sum_probs=85.8
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
|+....+....+||||||||++||||++.+|++|+|||||+|||+.+.+.+.+.|+++..+|+|+|++||+++
T Consensus 443 gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~------- 515 (544)
T TIGR01842 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS------- 515 (544)
T ss_pred ccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-------
Confidence 4444455567789999999999999999999999999999999999999999999998756788888888753
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+++++++|++++.|+++++.
T Consensus 516 -------------------------------------~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 516 -------------------------------------LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred -------------------------------------HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 24679999999999999999987764
No 287
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=4.2e-22 Score=188.74 Aligned_cols=131 Identities=26% Similarity=0.420 Sum_probs=106.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccccc----------cCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSKHT----------LCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~~~----------~v~~LSgGqrqrl~iA~aL~ 70 (203)
...|++|.. .+++ -|+.|++. ..+.+.++++.+++.+..++ ...+||||||||++|||||+
T Consensus 415 ~i~~v~Q~~--~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 415 AISVVSQRV--HLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred heeEEcccc--hhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 355666643 2333 48888763 34578889999998766443 34569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+.+.|+++. +|+|+|++||+++
T Consensus 492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~----------------------------------- 535 (574)
T PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT----------------------------------- 535 (574)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-----------------------------------
Confidence 9999999999999999999999999999875 4788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||++++|++|+++..|+.+++.
T Consensus 536 ---------~~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 536 ---------GLEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred ---------HHHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 23469999999999999999988775
No 288
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.88 E-value=2.9e-22 Score=161.62 Aligned_cols=80 Identities=28% Similarity=0.499 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ 134 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~ 134 (203)
||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++.++|.|+|++||+++
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~------------------- 143 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD------------------- 143 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------
Confidence 9999999999999999999999999999999999999999999999866788888888753
Q ss_pred HHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 135 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 135 ~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
.+...||+++++.+|++++
T Consensus 144 ------------------------~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 144 ------------------------EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ------------------------HHHHhCCEEEEEECCEEEe
Confidence 3678899999999999875
No 289
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=4.2e-22 Score=188.69 Aligned_cols=131 Identities=26% Similarity=0.269 Sum_probs=103.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~ 70 (203)
...|++|... +++ -|+.+++.. .+++.++++.+|+.+.. ++.+ .+||||||||++|||||+
T Consensus 416 ~i~~v~Q~~~--lF~-~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 416 GVAMVQQDPV--VLA-DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred heEEEccCCc--ccc-chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 3455555432 323 477777643 45677888888765432 3333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+.+.|+++.+ ++|+|++||+++
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~----------------------------------- 536 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS----------------------------------- 536 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH-----------------------------------
Confidence 99999999999999999999999999998753 578888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+++..|+++++.
T Consensus 537 ---------~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 537 ---------TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred ---------HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 35579999999999999999998875
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.88 E-value=4e-22 Score=161.72 Aligned_cols=60 Identities=40% Similarity=0.641 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|+|++||++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999999999999999999999999999999999999999986677888888875
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=5.8e-22 Score=163.60 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=91.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..|.+|. ..++..+|+.+++.. .+++.++++.+++.+..++++++||||||||++||+|++.+|++++||
T Consensus 75 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 152 (198)
T TIGR01189 75 ILYLGHL--PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD 152 (198)
T ss_pred eEEeccC--cccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4455542 234455788886532 235788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
|||+|||+.++..+++.|+++.++|.|||++||++..
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 9999999999999999999998789999999999764
No 292
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.88 E-value=3.5e-22 Score=192.44 Aligned_cols=129 Identities=27% Similarity=0.345 Sum_probs=102.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~ 70 (203)
...+++|... + ..-|+.|++.. .+++.++++..|+.+.. ++.+ .+||||||||++|||||+
T Consensus 528 ~i~~v~Q~~~--l-f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 528 QLGVVLQNGR--L-MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred ccEEEccCCc--c-CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4556665432 2 23477777632 46677788888776543 3333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+.+.|+++ ++|+|++||+++
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~----------------------------------- 646 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS----------------------------------- 646 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH-----------------------------------
Confidence 999999999999999999999999998876 478888888863
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+++..|+.+++.
T Consensus 647 ---------~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 647 ---------TIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred ---------HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 34669999999999999999998875
No 293
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.88 E-value=3.9e-22 Score=188.21 Aligned_cols=119 Identities=32% Similarity=0.475 Sum_probs=93.9
Q ss_pred CCHhHHHhH------HHHHHHHHHHcCC-------cccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397 23 ISVDDILDT------IGLVDDILDTIGL-------VLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85 (203)
Q Consensus 23 ~~~~~~~~~------~~~v~~~L~~~~L-------~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL 85 (203)
-|+.|++.. .+.+.++++..++ .+..|+.++ .||||||||++||||++.+|++|+|||||++|
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 566666532 2344444444432 223455554 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397 86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165 (203)
Q Consensus 86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d 165 (203)
|+.+.+.+.+.++++. +|+|+|+++|.++ .+. .||
T Consensus 497 D~~tE~~I~~~l~~l~-~~rT~iiIaHRls-------------------------------------------ti~-~aD 531 (567)
T COG1132 497 DTETEALIQDALKKLL-KGRTTLIIAHRLS-------------------------------------------TIK-NAD 531 (567)
T ss_pred CHHhHHHHHHHHHHHh-cCCEEEEEeccHh-------------------------------------------HHH-hCC
Confidence 9999999999999877 5678888888864 233 499
Q ss_pred EEEEEeCCeEEeeCCcccchh
Q psy8397 166 HLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 166 ~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+|+|+++|++++.|+++++..
T Consensus 532 ~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 532 RIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999999998864
No 294
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=4.7e-22 Score=192.03 Aligned_cols=130 Identities=26% Similarity=0.298 Sum_probs=101.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL 69 (203)
...+++|... + ..-|+.|++. ..+++.++++..++.+.. ++.+ .+||||||||++|||||
T Consensus 554 ~i~~v~Q~~~--l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 554 SVAMVDQDIF--L-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred heeEEecCCh--h-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence 4456665432 2 3457777763 245666777777664432 3333 46999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||++||+.+.+.+++.|++ .++|+|++||+++
T Consensus 631 l~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~---------------------------------- 673 (710)
T TIGR03796 631 VRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS---------------------------------- 673 (710)
T ss_pred hhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH----------------------------------
Confidence 999999999999999999999999999875 4789999998864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
....||+|++|++|+++..|+.+++.+
T Consensus 674 ----------~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 674 ----------TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ----------HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 345699999999999999999988753
No 295
>KOG0059|consensus
Probab=99.87 E-value=1.6e-22 Score=200.60 Aligned_cols=137 Identities=24% Similarity=0.409 Sum_probs=114.9
Q ss_pred CCCceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 4 SNHGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
...+..||+|. .+ +...+|.+|.+.. .+.++.+++.++|.+.++++++.+|||+|||+++|.|++.
T Consensus 638 ~~~~iGyCPQ~-d~-l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 638 VRKQLGYCPQF-DA-LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhcccCCch-hh-hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 34568899985 33 5678999997743 4457889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA 143 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (203)
+|++++|||||+|+||.+++.+|+++.+++++|+.||+|||.++| .+.+|+|++|+-.|..+|..++|.++
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE-~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE-AEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999999999999999999999999888899999999875 56666666666666666666665554
No 296
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.2e-22 Score=161.74 Aligned_cols=77 Identities=35% Similarity=0.600 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchh
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTN 133 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~ 133 (203)
||||||||++||+||+.+|++++|||||+|||+.++..+++.|++++++ |.|+|++||+++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~------------------ 162 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD------------------ 162 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------
Confidence 9999999999999999999999999999999999999999999999876 778888888753
Q ss_pred HHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 134 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 134 ~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
.+..+||++++|++|+
T Consensus 163 -------------------------~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 163 -------------------------EAARLADRVVVLRDGK 178 (178)
T ss_pred -------------------------HHHHhcCEEEEEeCCC
Confidence 3667899999999884
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=1.2e-21 Score=185.18 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=104.2
Q ss_pred eEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl 77 (203)
.|.+|... .+...+|+.+++.. ..++..+++.+|+.. ..++++++||||||||++||++|+.+|++||
T Consensus 390 ~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 390 AYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EEEeCchh-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45555321 34556888887532 224567899999964 5799999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCch
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 157 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~ 157 (203)
|||||+|||+.++..+++.|+++. | |||++||+++
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~------------------------------------------ 503 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW------------------------------------------ 503 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH------------------------------------------
Confidence 999999999999999999999873 3 7888888854
Q ss_pred hHHHhhcCEEEEEeC-CeEE-eeCCcccch
Q psy8397 158 ATIFEMVDHLYVIAE-GHCV-YKGSSANTI 185 (203)
Q Consensus 158 ~~i~~~~d~v~vl~~-G~i~-~~g~~~~~~ 185 (203)
.+..+||+++++++ |++. +.|+.++..
T Consensus 504 -~~~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 504 -FLDRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred -HHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 46789999999985 7876 678776554
No 298
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=1.3e-21 Score=184.75 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=104.0
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
..|.+|... .++..+|+.+++.. ..++.++++.+|+.. ..++++++|||||||||+||++|+.+|++|
T Consensus 387 i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 387 LAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred EEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 345555322 24456788887643 224567899999964 579999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
||||||+|||+.++..+++.|+++. | |||++||+++
T Consensus 466 lLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~----------------------------------------- 501 (552)
T TIGR03719 466 LLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW----------------------------------------- 501 (552)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-----------------------------------------
Confidence 9999999999999999999999873 3 7888888853
Q ss_pred hhHHHhhcCEEEEEeC-CeEE-eeCCcccch
Q psy8397 157 SATIFEMVDHLYVIAE-GHCV-YKGSSANTI 185 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~~-G~i~-~~g~~~~~~ 185 (203)
.+..+||++++|++ |++. +.|+.++..
T Consensus 502 --~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 502 --FLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred --HHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 46789999999986 5765 667765543
No 299
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=1.3e-21 Score=163.50 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=80.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
+..|.+|... ++ ..|+.+++.. .+++.++++.+++.+. .++++..||||||||++||++|+
T Consensus 80 ~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 80 SVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred eEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 4556665432 33 4688776642 2344566777776432 34678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCeEEEEecCCC
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVA--MLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~--~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|++||+++
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 9999999999999999999999998 66766655778888888753
No 300
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=6.2e-22 Score=190.93 Aligned_cols=133 Identities=25% Similarity=0.374 Sum_probs=102.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA~aL 69 (203)
...+++|... + ..-|+.|++. ..+++.++++..++.+.. ++. ..+||||||||++|||||
T Consensus 540 ~i~~v~Q~~~--l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 540 NIGYVPQDPR--L-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred ccEEECCChh--h-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 3445554322 2 2347777653 245566677776654432 333 346999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++++|||||++||+.+.+.+.+.|+++. +++|+|++||+++
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~---------------------------------- 661 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS---------------------------------- 661 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH----------------------------------
Confidence 99999999999999999999999999999875 3678888888763
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhH
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPY 187 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~ 187 (203)
....||+|++|++|++++.|+.+++++.
T Consensus 662 ----------~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 662 ----------LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred ----------HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 3468999999999999999999887653
No 301
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=3.4e-22 Score=193.94 Aligned_cols=92 Identities=32% Similarity=0.520 Sum_probs=82.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCC
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDS 129 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~ 129 (203)
..-.+||||||||++|||||+++|+||+||||||+||+.+.+.+.+.|.++. +|+|+|++||.++
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~-------------- 669 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS-------------- 669 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--------------
Confidence 3344699999999999999999999999999999999999999999999976 4678888888763
Q ss_pred CchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 130 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
..+.||+|+||++|+++.+|+.+++..
T Consensus 670 ------------------------------ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 670 ------------------------------TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred ------------------------------HhhhccEEEEccCCceeccCCHHHHHH
Confidence 478899999999999999999998864
No 302
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=8.4e-22 Score=185.93 Aligned_cols=130 Identities=26% Similarity=0.360 Sum_probs=101.3
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL 69 (203)
..+.+|... + ..-|+.|++.. .+++.++++..|+.+. .|+.+ .+||||||||++|||||
T Consensus 419 i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 419 VALVSQNVH--L-FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred ceEEccCce--e-ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 445555422 2 23577776542 3567777777765432 34444 45999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||++||+.+...+.+.|+++. +++|+|++||+++
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~---------------------------------- 540 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS---------------------------------- 540 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH----------------------------------
Confidence 99999999999999999999999999999874 3678888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
..+.||+|+++++|+++..|+.+++.
T Consensus 541 ----------~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 541 ----------TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred ----------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 45679999999999999999998876
No 303
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.7e-21 Score=161.29 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=91.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE 80 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE 80 (203)
..|.+|. ..++...|+.++... ..++.++++.+++.+..++++++|||||+||++||||++.+|++|+|||
T Consensus 76 i~~~~q~--~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 76 LCFVGHR--SGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred eEEeccc--cccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3454542 223456888887643 2357889999999888899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 81 Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
||+|||+.++..+++.|++++++|.|||++||++..
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 189 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 999999999999999999998789999999999753
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=1.6e-21 Score=188.48 Aligned_cols=131 Identities=23% Similarity=0.251 Sum_probs=101.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~a 68 (203)
...|++|... ++ .-|+.|++.. .+++.++++..++.+. .++.+ .+||||||||++||||
T Consensus 549 ~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 549 FINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred heEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 4556665422 32 3477776542 3456667776665432 23333 4699999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
++.+|++|+|||||++||+.+.+.+.+.|+++ +|+|+|++||+++
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--------------------------------- 670 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--------------------------------- 670 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH---------------------------------
Confidence 99999999999999999999999999999875 4788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
....||+|++|++|+++..|+.+++..
T Consensus 671 -----------~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 671 -----------VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred -----------HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 346799999999999999999887753
No 305
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.4e-22 Score=183.47 Aligned_cols=110 Identities=32% Similarity=0.523 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCccccccc-------CC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 32 IGLVDDILDTIGLVLSKHTL-------CG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~-------v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
.+.+.++++.+||.+..... ++ .||||||||++|||+|+++.++++|||||.|||+.+.+++++.+.+-
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 56778889999887654333 33 69999999999999999999999999999999999999999999886
Q ss_pred HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
. +|+|+|++||.+. -.+.||+|+||++|+++.+|+
T Consensus 521 ~-~~kTll~vTHrL~--------------------------------------------~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 521 A-EGKTLLMVTHRLR--------------------------------------------GLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred h-cCCeEEEEecccc--------------------------------------------cHhhcCEEEEEECCeeeecCC
Confidence 5 4889999999864 257899999999999999999
Q ss_pred cccchh
Q psy8397 181 SANTIP 186 (203)
Q Consensus 181 ~~~~~~ 186 (203)
++++..
T Consensus 556 ~~~Ll~ 561 (573)
T COG4987 556 HAELLA 561 (573)
T ss_pred HHhhhc
Confidence 998864
No 306
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=188.43 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
.++.++++.+|+. ...++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||
T Consensus 127 ~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivs 203 (638)
T PRK10636 127 SRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILIS 203 (638)
T ss_pred HHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEe
Confidence 4678899999997 5789999999999999999999999999999999999999999999999988775 45888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANT 184 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~ 184 (203)
|++. ++..+||++++|++|++. +.|.....
T Consensus 204 Hd~~-------------------------------------------~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 204 HDRD-------------------------------------------FLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CCHH-------------------------------------------HHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 8853 467899999999999985 66765543
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=2.4e-21 Score=183.34 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=100.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+++|.. .++. -|+.|++.. .+.+.++++..++.+ ..+....+||||||||++|||||
T Consensus 390 ~i~~v~q~~--~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 390 RLAVVSQTP--FLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred heEEEccCC--eecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 345566542 2333 477776532 345566666655532 22334457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++++|||||++||+.+.+.+.+.|+++. +|+|+|++||+++
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~---------------------------------- 511 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS---------------------------------- 511 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh----------------------------------
Confidence 99999999999999999999999999999875 5788888888864
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||++++|++|+++..|+.+++.
T Consensus 512 ----------~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 512 ----------ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred ----------HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 24569999999999999999988765
No 308
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=1.8e-21 Score=185.79 Aligned_cols=91 Identities=27% Similarity=0.493 Sum_probs=83.1
Q ss_pred CHhHHHh---HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 24 SVDDILD---TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 24 ~~~~~~~---~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
||.|++. ..+++.++++.++|....++++++|||||||||+||++|+.+|++|||||||++||+.++..+++.|+++
T Consensus 179 tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 179 KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 7877653 2457889999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCC
Q psy8397 101 ARGGRTIVCTIHQPS 115 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~ 115 (203)
++ |.|||++||+++
T Consensus 259 ~~-g~tvIivsHd~~ 272 (590)
T PRK13409 259 AE-GKYVLVVEHDLA 272 (590)
T ss_pred HC-CCEEEEEeCCHH
Confidence 87 888888888864
No 309
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=183.74 Aligned_cols=130 Identities=27% Similarity=0.420 Sum_probs=105.7
Q ss_pred eeEEEeeecccccCCCCHhHHH------hHHHHHHHHHHHcCCccccc------ccCCC----CCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDIL------DTIGLVDDILDTIGLVLSKH------TLCGR----LSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~L~~~~L~~~~~------~~v~~----LSgGqrqrl~iA~aL~~ 71 (203)
..|..| .+ |-..-|+.|++ ...+.+.++++..|+.++.+ +.+++ |||||+|||++||||++
T Consensus 397 i~~v~Q--~p-~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 397 ISWVSQ--NP-YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eeeeCC--CC-ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 455554 33 23445777776 34677888888888866544 34444 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+++++||||||++||.++.+.+.+.|.++.++ +|+|++||++.
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~------------------------------------ 516 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE------------------------------------ 516 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH------------------------------------
Confidence 99999999999999999999999999999864 88888888863
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
...-+|+|++|++|+++..|.++++.
T Consensus 517 --------~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 517 --------DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred --------HHhcCCEEEEecCCceeccCCHHHHh
Confidence 45679999999999999999998874
No 310
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=1.5e-21 Score=184.32 Aligned_cols=105 Identities=21% Similarity=0.365 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
.++.++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisH 216 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH 216 (552)
T ss_pred HHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeC
Confidence 35667788888854 689999999999999999999999999999999999999999999999988752 48888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANT 184 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~ 184 (203)
+++ .+..+||++++|++|+++ +.|+++++
T Consensus 217 d~~-------------------------------------------~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 217 DRY-------------------------------------------FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CHH-------------------------------------------HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 753 467899999999999975 77887653
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=7.3e-21 Score=166.75 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=95.5
Q ss_pred eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.+.+|.. .+++ .|+.|++.. ..++.+.++.+++.+. .++++.+||||||||++|||+|+.+
T Consensus 101 ~yv~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 101 SFSSQFS--WIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEeCcc--cccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3555542 2333 477776432 1233445555555432 2344679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.+ +.+. ++.|||++||+++
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~------------------------------------ 220 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------ 220 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH------------------------------------
Confidence 9999999999999999999999865 5554 4678888888764
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 221 -------~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 221 -------HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred -------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 23 469999999999999999987765
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=1.6e-21 Score=183.23 Aligned_cols=120 Identities=29% Similarity=0.402 Sum_probs=97.1
Q ss_pred CCCCHhHHHh-------HHHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8397 21 HRISVDDILD-------TIGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPT 82 (203)
Q Consensus 21 ~~~~~~~~~~-------~~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt 82 (203)
..-|+.|++. ..+++.++++.+|+.+.. |+.+ ..||||||||++||||++.+|++++|||||
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt 497 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3457777643 245677778877765432 3333 359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh
Q psy8397 83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE 162 (203)
Q Consensus 83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~ 162 (203)
++||+.+.+.+++.|+++. +++|+|++||+++ ...
T Consensus 498 s~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--------------------------------------------~~~ 532 (571)
T TIGR02203 498 SALDNESERLVQAALERLM-QGRTTLVIAHRLS--------------------------------------------TIE 532 (571)
T ss_pred ccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--------------------------------------------HHH
Confidence 9999999999999999874 4678888888752 467
Q ss_pred hcCEEEEEeCCeEEeeCCcccch
Q psy8397 163 MVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 163 ~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.||+|+++++|+++..|+.+++.
T Consensus 533 ~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 533 KADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred hCCEEEEEeCCEEEeeCCHHHHH
Confidence 89999999999999999988765
No 313
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=3.2e-21 Score=159.01 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=87.1
Q ss_pred ccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397 19 YSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 19 ~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~ 91 (203)
+....|+.+++.. .+++.++++.+++.+..++++++||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 3456788887643 245678889999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 92 QCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 92 ~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
.+++.|++..++|.|+|++||++++
T Consensus 161 ~l~~~l~~~~~~~~tiii~sh~~~~ 185 (195)
T PRK13541 161 LLNNLIVMKANSGGIVLLSSHLESS 185 (195)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCccc
Confidence 9999998777779999999999874
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=1.9e-21 Score=186.59 Aligned_cols=104 Identities=27% Similarity=0.462 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
..++.++++.+|+. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|
T Consensus 136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs 210 (635)
T PRK11147 136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS 210 (635)
T ss_pred HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 35678899999996 388999999999999999999999999999999999999999999999998873 4888888
Q ss_pred cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397 112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN 183 (203)
Q Consensus 112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~ 183 (203)
|++. .+..+||++++|++|+++ +.|+.+.
T Consensus 211 Hd~~-------------------------------------------~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 211 HDRS-------------------------------------------FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CCHH-------------------------------------------HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 8853 467899999999999987 5677654
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=162.49 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=103.8
Q ss_pred cccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397 18 QYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85 (203)
Q Consensus 18 ~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL 85 (203)
.+.+.+++.|+.. +.+++.+.+..+||.+..++++-+||||||||+.|||||+.+|++|+||||+++|
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 3557788888764 3567888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhc
Q psy8397 86 DSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 164 (203)
Q Consensus 86 D~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~ 164 (203)
|.-.++.+.+.|-.+.+. |+.++++||+++| +.-++
T Consensus 164 Da~tRe~mQelLldlw~~tgk~~lliTH~ieE-------------------------------------------Alfla 200 (259)
T COG4525 164 DALTREQMQELLLDLWQETGKQVLLITHDIEE-------------------------------------------ALFLA 200 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-------------------------------------------HHhhh
Confidence 999999999999888753 7777777777643 45678
Q ss_pred CEEEEEe--CCeEEeeCCcc
Q psy8397 165 DHLYVIA--EGHCVYKGSSA 182 (203)
Q Consensus 165 d~v~vl~--~G~i~~~g~~~ 182 (203)
++++||+ .|+|+..-+++
T Consensus 201 trLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 201 TRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred heeEEecCCCceeeEecCCC
Confidence 9999998 57888766665
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.3e-21 Score=166.59 Aligned_cols=107 Identities=27% Similarity=0.451 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG--GRTIV 108 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tvi 108 (203)
..+++..+++.+|+.+.++++..+||-|||||+.|||||+.+|++||||||++|||...+..+.+.+.++... +.|+|
T Consensus 148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll 227 (257)
T COG1119 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL 227 (257)
T ss_pred HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999854 67777
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
+|||..+ ++..-+++++.+++|++++.|.
T Consensus 228 ~VtHh~e-------------------------------------------Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 228 FVTHHAE-------------------------------------------EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEEcchh-------------------------------------------hcccccceEEEeeCCceeeccc
Confidence 7777754 3567789999999999999874
No 317
>KOG0055|consensus
Probab=99.86 E-value=1.9e-21 Score=194.71 Aligned_cols=121 Identities=32% Similarity=0.480 Sum_probs=95.2
Q ss_pred CCCCHhHHHhH------HHHHHHHHHHcC-------CcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397 21 HRISVDDILDT------IGLVDDILDTIG-------LVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTT 83 (203)
Q Consensus 21 ~~~~~~~~~~~------~~~v~~~L~~~~-------L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~ 83 (203)
...|+.|+... .+++.++.+..+ |.+..++.++ +||||||||++|||||+.+|+||||||||+
T Consensus 439 F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS 518 (1228)
T KOG0055|consen 439 FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATS 518 (1228)
T ss_pred hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence 44677776532 334444443332 3333455554 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh
Q psy8397 84 GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM 163 (203)
Q Consensus 84 gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~ 163 (203)
+||+.+.+.+.+.|.+.. .|+|.|+++|+++ .+.+
T Consensus 519 aLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-------------------------------------------tIrn- 553 (1228)
T KOG0055|consen 519 ALDAESERVVQEALDKAS-KGRTTIVVAHRLS-------------------------------------------TIRN- 553 (1228)
T ss_pred ccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-------------------------------------------hhhc-
Confidence 999999999999998754 5778888888875 2455
Q ss_pred cCEEEEEeCCeEEeeCCcccchh
Q psy8397 164 VDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 164 ~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+|+++++++|+|++.|++++++.
T Consensus 554 aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 554 ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred cCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999874
No 318
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=2.6e-21 Score=188.28 Aligned_cols=109 Identities=27% Similarity=0.389 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+++.++++.+|+. ...++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++. +| |||++
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIiv 680 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMV 680 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEE
Confidence 35678899999997 4679999999999999999999999999999999999999999999988877664 24 88888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccchh
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANTIP 186 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~~~ 186 (203)
||++. .+..+||++++|.+|+++ +.|++++...
T Consensus 681 SHd~~-------------------------------------------~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 681 SHDEH-------------------------------------------LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred ECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 88753 467899999999999998 7787765443
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=5.9e-21 Score=181.42 Aligned_cols=96 Identities=32% Similarity=0.461 Sum_probs=83.1
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhc
Q psy8397 45 VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 124 (203)
Q Consensus 45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~ 124 (203)
..........||||||||++|||||+.+|++|+|||||+|||+.+.+.+.+.|+++. +|+|+|++||+++
T Consensus 462 ~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--------- 531 (585)
T TIGR01192 462 DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--------- 531 (585)
T ss_pred cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH---------
Confidence 333445566899999999999999999999999999999999999999999999874 4788888888864
Q ss_pred cccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 125 LGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||+++++++|+++..|+.+++.
T Consensus 532 ----------------------------------~~-~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 532 ----------------------------------TV-RNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred ----------------------------------HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 23 569999999999999999988775
No 320
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=4.1e-21 Score=180.89 Aligned_cols=131 Identities=26% Similarity=0.289 Sum_probs=100.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccc-------c----ccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSK-------H----TLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~-------~----~~v~~LSgGqrqrl~iA~aL 69 (203)
...|++|... ...-|+.|++.. .+++.++++.+|+.+.. + .....||||||||++||||+
T Consensus 415 ~i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 415 RMALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred hceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 3456665322 234577776542 35666777776654322 2 23346999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||++||+.+.+.+++.++++. +++|+|++||+++
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~---------------------------------- 536 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA---------------------------------- 536 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH----------------------------------
Confidence 99999999999999999999999999999875 4788888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....+|+++++++|+++..|+++++.
T Consensus 537 ----------~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 537 ----------TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred ----------HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 35679999999999999999988764
No 321
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=163.53 Aligned_cols=134 Identities=29% Similarity=0.433 Sum_probs=116.9
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI 65 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~i 65 (203)
+|..+-||.++ .+..+||.|+++. +.+++++|...||.+.++...+.||.||||++.|
T Consensus 81 ~GIGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI 158 (249)
T COG4674 81 AGIGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI 158 (249)
T ss_pred hccCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence 56778888766 4688999998763 4589999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG 145 (203)
Q Consensus 66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (203)
+.-++++|++|+||||++|+.-......-++|+.+++
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~------------------------------------------- 195 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG------------------------------------------- 195 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 9999999999999999999999999999999999873
Q ss_pred CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
..+|+++.|||. ++.+++++|.||++|.+.++|+.+++-
T Consensus 196 ~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 196 KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 345555555555 589999999999999999999988764
No 322
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.7e-21 Score=155.78 Aligned_cols=60 Identities=43% Similarity=0.775 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++||+++
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 156 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS 156 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 999999999999999999999999999999999999999999999863 688888888864
No 323
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=3.9e-21 Score=177.78 Aligned_cols=133 Identities=21% Similarity=0.333 Sum_probs=119.1
Q ss_pred CCCCceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397 3 DSNHGTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~ 67 (203)
+..+|...++|-|+ +.+++||-|++- .++++.++.+.+||.-..+.++.+||-|+||||.|-+
T Consensus 76 A~~~GIGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 76 AIRLGIGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred HHHcCCcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHH
Confidence 34678888898776 468899999762 3567899999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
+|..+|++|||||||+-|-|...+++++.++.++++|+|||++||-+.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-------------------------------- 201 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-------------------------------- 201 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH--------------------------------
Confidence 999999999999999999999999999999999999999999999875
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
++.++|||+.||.+|+++...+
T Consensus 202 -----------Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 202 -----------EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred -----------HHHHhhCeeEEEeCCeEEeeec
Confidence 4789999999999999876655
No 324
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=4e-21 Score=186.31 Aligned_cols=129 Identities=25% Similarity=0.289 Sum_probs=97.7
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~ 70 (203)
..+++|.. +...-|+.|++.. .+.+.++++..++.+. .|+.+ .+||||||||++||||++
T Consensus 557 i~~v~Q~~---~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEP---VLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCc---cccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 45555532 2234688887642 4567777777776543 23333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+.+ .. ..+++|+|++||+++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~----------------------------------- 675 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS----------------------------------- 675 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH-----------------------------------
Confidence 9999999999999999999998888 22 234677777777753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
....+|+|++|++|+++..|+++++.+
T Consensus 676 ---------~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 676 ---------TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred ---------HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 346799999999999999999988753
No 325
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=4.7e-21 Score=184.99 Aligned_cols=130 Identities=25% Similarity=0.323 Sum_probs=99.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..+++|.. .+ ..-|+.|++.. .+.+.++++..++.+ .......+||||||||++|||||+
T Consensus 533 i~~v~q~~--~l-f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 533 MGVVLQEN--VL-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred CeEEccCC--ee-hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 44555532 22 23477776542 345555566555433 233345579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+++.|+++. .|+|+|++||+++
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~----------------------------------- 653 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS----------------------------------- 653 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-----------------------------------
Confidence 9999999999999999999999999999874 5788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||++++|++|++++.|+.+++.
T Consensus 654 ---------~~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 654 ---------TVRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred ---------HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 23569999999999999999988775
No 326
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=8.3e-21 Score=179.85 Aligned_cols=131 Identities=27% Similarity=0.374 Sum_probs=100.0
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL 69 (203)
...|.+|... + ..-|+.|++.. .+++.++++.+++.+. .++.+ ..||||||||++|||||
T Consensus 410 ~i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 410 NIAVVFQDAG--L-FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred heEEEecCcc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 3455555432 2 23577776532 3456666666665432 23333 45999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++++|||||++||+.+...+++.|+++. +++|+|++||+++
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~---------------------------------- 531 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS---------------------------------- 531 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH----------------------------------
Confidence 99999999999999999999999999998874 4678888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
..+.+|++++|++|+++..|+.+++.
T Consensus 532 ----------~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 532 ----------TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred ----------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 35679999999999999999988775
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=7.7e-21 Score=182.37 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=102.9
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
..|.+|.. ..+...+|+.+++.. ...+.++++.+++. +..++++++|||||||||+||++|+.+|++|
T Consensus 384 i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 384 VAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEEEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 34455432 224556788886542 23567789999995 5689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
||||||+|||+.++..+.+.|+++ +.|||++||++.
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~----------------------------------------- 498 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ----------------------------------------- 498 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-----------------------------------------
Confidence 999999999999999999988876 348888888853
Q ss_pred hhHHHhhcCEEEEEe-CCeEE-eeCCcccc
Q psy8397 157 SATIFEMVDHLYVIA-EGHCV-YKGSSANT 184 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~-~G~i~-~~g~~~~~ 184 (203)
.+..+||+++++. +|++. +.|+.++.
T Consensus 499 --~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 499 --FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred --HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 4678999999998 79875 56665544
No 328
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=6.5e-21 Score=185.51 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
..++.++|..+|+. ...++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ |.|||++
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 45677788888986 5578999999999999999999999999999999999999999999999999886 5788888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN 183 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~ 183 (203)
||+++ .+..+||++++|++|++. +.|+.+.
T Consensus 398 sHd~~-------------------------------------------~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 398 SHARE-------------------------------------------FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred ECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 88853 467889999999999986 6777653
No 329
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=7.3e-21 Score=189.25 Aligned_cols=109 Identities=27% Similarity=0.414 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 32 IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
.++++ +|+.+||... .++++.+|||||+|||.||++|+.+| ++++|||||+|||+..+..+++.|+++++.|.|||
T Consensus 467 ~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVI 545 (943)
T PRK00349 467 RERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLI 545 (943)
T ss_pred HHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34453 6888999876 79999999999999999999999997 99999999999999999999999999987788888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~ 182 (203)
+++|+++ .+ ..||++++| .+|++++.|+++
T Consensus 546 vVeH~~~-------------------------------------------~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~ 581 (943)
T PRK00349 546 VVEHDED-------------------------------------------TI-RAADYIVDIGPGAGVHGGEVVASGTPE 581 (943)
T ss_pred EEeCCHH-------------------------------------------HH-HhCCEEEEeccccCCCCCEEeeccCHH
Confidence 8888864 23 359999999 899999999988
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 582 e~~ 584 (943)
T PRK00349 582 EIM 584 (943)
T ss_pred HHh
Confidence 764
No 330
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=8.3e-21 Score=157.20 Aligned_cols=70 Identities=26% Similarity=0.357 Sum_probs=60.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397 46 LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 46 ~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~ 115 (203)
...+.++.+||||||||++|||+|+.+|++++|||||+|||+.+++.+++ .++.+.++|.|||++||+++
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 34566788999999999999999999999999999999999999999998 56666655778888888753
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.84 E-value=2e-20 Score=176.72 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhC
Q psy8397 31 TIGLVDDILDTIGLVLSKHTL------CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK-ALARG 103 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~------v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~-~l~~~ 103 (203)
..+++.++++.+++.+..+.. ..+||||||||++||||++.+|++|+|||||++||+.+.+.+.+.+. .+...
T Consensus 441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 345678889999987665433 25799999999999999999999999999999999999999998654 56556
Q ss_pred CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee
Q psy8397 104 GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK 178 (203)
Q Consensus 104 g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~ 178 (203)
|+|+|++||+++ ....||+|+++++|+++..
T Consensus 521 ~~tiiiisH~~~--------------------------------------------~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDDQ--------------------------------------------YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccHH--------------------------------------------HHHhCCEEEEEECCEEEEe
Confidence 788888888753 3468999999999998754
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.84 E-value=2.8e-20 Score=150.43 Aligned_cols=61 Identities=39% Similarity=0.648 Sum_probs=56.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
++.+||||||||++|||||+.+|++++|||||+|||+.+++.+.+.++++ +.|+|++||++
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~ 148 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence 56899999999999999999999999999999999999999999999876 57888888885
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=2e-20 Score=154.15 Aligned_cols=88 Identities=26% Similarity=0.407 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCchhhhhhhccccCCCchh
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLGLDSNSTN 133 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~tH~~~~~~~~~~~~~~~~~~~~~ 133 (203)
||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.++++.+++ .|+|++||+++
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~------------------ 133 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA------------------ 133 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH------------------
Confidence 99999999999999999999999999999999999999999999987654 78888888753
Q ss_pred HHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee--CCcccch
Q psy8397 134 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK--GSSANTI 185 (203)
Q Consensus 134 ~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~--g~~~~~~ 185 (203)
.+..+||++++++++-.++. |.|....
T Consensus 134 -------------------------~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 134 -------------------------VLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred -------------------------HHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 36778999999998876655 6666544
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.1e-20 Score=156.31 Aligned_cols=143 Identities=24% Similarity=0.373 Sum_probs=121.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcc-cccccCC-CCCHHHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVL-SKHTLCG-RLSGGQKKRLSIALE 68 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~-~~~~~v~-~LSgGqrqrl~iA~a 68 (203)
.|....||.+.. .+..++.+++. ..+++++.++.+++.+ ++++.++ .+|||||+|..|+..
T Consensus 81 ~GifLafQ~P~e--i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 81 AGIFLAFQYPVE--IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred cCCEEeecCCcc--CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 466677776553 36677777553 2456788899999986 7889988 599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
++.+|++.+||||-||||..+-+.+.+.+..++..|.+++++||+-
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~---------------------------------- 204 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ---------------------------------- 204 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH----------------------------------
Confidence 9999999999999999999999999999999998899999999983
Q ss_pred EEEeecCchhHHHhhc--CEEEEEeCCeEEeeCCcccchhHHHhcCCCC
Q psy8397 149 IVCTIHQPSATIFEMV--DHLYVIAEGHCVYKGSSANTIPYLQTIGLHC 195 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~--d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~ 195 (203)
.+..+. |++++|.+|+|+.+|.| ++...+++-|+.|
T Consensus 205 ----------rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 205 ----------RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred ----------HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 245554 99999999999999999 8888888888754
No 335
>KOG0055|consensus
Probab=99.84 E-value=8e-21 Score=190.27 Aligned_cols=117 Identities=32% Similarity=0.518 Sum_probs=94.2
Q ss_pred CCHhHHHhHHHH--HHHHHHHcCCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy8397 23 ISVDDILDTIGL--VDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96 (203)
Q Consensus 23 ~~~~~~~~~~~~--v~~~L~~~~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~ 96 (203)
.|..|+.+.-+. +.+.+. +|.+-.|++++ +||||||||++||||++.||+||||||.||+||.++.+.+-+.
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence 555555443222 222332 45666677776 7999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397 97 LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV 176 (203)
Q Consensus 97 l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~ 176 (203)
|.+.. .|+|.|++.|.++ -..-||.|.|+++|+|+
T Consensus 1169 Ld~a~-~gRT~IvIAHRLS--------------------------------------------TIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1169 LDRAM-EGRTTIVIAHRLS--------------------------------------------TIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred HHHhh-cCCcEEEEecchh--------------------------------------------hhhcCCEEEEEECCEEE
Confidence 99864 5778888888765 24679999999999999
Q ss_pred eeCCcccchh
Q psy8397 177 YKGSSANTIP 186 (203)
Q Consensus 177 ~~g~~~~~~~ 186 (203)
+.|+.++++.
T Consensus 1204 E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1204 EQGTHDELLA 1213 (1228)
T ss_pred ecccHHHHHh
Confidence 9999998875
No 336
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=2.4e-20 Score=185.22 Aligned_cols=104 Identities=28% Similarity=0.439 Sum_probs=92.4
Q ss_pred HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.+..+||... .++++.+|||||+|||.||++|+.+| +++||||||+|||+.++..+++.|++++++|.|||+++|++
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677899865 79999999999999999999999986 89999999999999999999999999987788888888875
Q ss_pred CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccch
Q psy8397 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTI 185 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~ 185 (203)
+ .+ ..||++++| ++|+|++.|+++++.
T Consensus 550 ~-------------------------------------------~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 550 E-------------------------------------------TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred H-------------------------------------------HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 3 23 489999999 899999999988764
No 337
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=3.9e-20 Score=174.21 Aligned_cols=104 Identities=27% Similarity=0.334 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy8397 32 IGLVDDILDTIGLVLSKHTL-----CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGR 105 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~-----v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~ 105 (203)
.+.+.++++.+++....+.. ..+||||||||++||||++.+|++|+|||||++||+.+.+.+.+.+.+..+ .|+
T Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45677889999887654322 348999999999999999999999999999999999999999998876543 478
Q ss_pred eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 106 TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 106 tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
|+|++||+++ ....||+++++++|+++...
T Consensus 502 tvi~itH~~~--------------------------------------------~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 502 TIFAISHDDH--------------------------------------------YFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEEEEEechH--------------------------------------------HHHhCCEEEEEECCEEEEec
Confidence 8888888753 35679999999999998663
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.9e-20 Score=193.44 Aligned_cols=131 Identities=26% Similarity=0.329 Sum_probs=101.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-------cccccCC----CCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-------SKHTLCG----RLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-------~~~~~v~----~LSgGqrqrl~iA~aL~ 70 (203)
..+++|... + ...|+.|++.. .+.+.++++..++.+ -.++.++ .||||||||++|||||+
T Consensus 1298 i~~V~Qep~--L-F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl 1374 (1466)
T PTZ00265 1298 FSIVSQEPM--L-FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1374 (1466)
T ss_pred ccEeCCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh
Confidence 445555322 2 35677776632 345666666665433 3455554 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|+|||||||||+||+.+.+.+.+.|.++. .+|+|+|+++|.++
T Consensus 1375 r~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls---------------------------------- 1420 (1466)
T PTZ00265 1375 REPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA---------------------------------- 1420 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH----------------------------------
Confidence 9999999999999999999999999999986 35788888888763
Q ss_pred EEeecCchhHHHhhcCEEEEEeC----CeEE-eeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAE----GHCV-YKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~----G~i~-~~g~~~~~~ 185 (203)
..+.||+|++|++ |+++ +.|+.++++
T Consensus 1421 ----------ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1421 ----------SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred ----------HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 3567999999999 9955 899988875
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=2.9e-20 Score=192.52 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=101.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~ 71 (203)
..+.+|.. .++. -|+.|+++. .+.+.++++..++.+. .|+.+ .+||||||||++|||||++
T Consensus 1312 i~iVpQdp--~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1312 LSIIPQSP--VLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred cEEECCCC--eeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 44555532 2333 377777642 4566777777766443 23333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|+||+|||||++||+.+.+.+.+.|++.. +++|+|+++|.++
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~------------------------------------ 1431 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN------------------------------------ 1431 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH------------------------------------
Confidence 999999999999999999999999999864 4788888888864
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
. ...||+|++|++|++++.|++++++
T Consensus 1432 -------t-i~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1432 -------T-IIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred -------H-HHhCCEEEEEECCEEEEECCHHHHH
Confidence 2 3459999999999999999999876
No 340
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.7e-20 Score=152.51 Aligned_cols=113 Identities=28% Similarity=0.476 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397 30 DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI 107 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv 107 (203)
++++.+.+||+.+.+. ...|..+..+||||+||+.|||-|+..|+++|+||||.|||...+.++++.++.|..+ |.++
T Consensus 126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 3566788999999986 4568889999999999999999999999999999999999999999999999999876 7788
Q ss_pred EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+++|||+. .+.-+++|.++|++|+++..|-.+.+.
T Consensus 206 viVTHDl~-------------------------------------------VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 206 VIVTHDLA-------------------------------------------VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred EEEechhH-------------------------------------------HHHHhhhcceeecCCCEeccccccccc
Confidence 88888753 345579999999999999999877664
No 341
>KOG0058|consensus
Probab=99.82 E-value=2.2e-20 Score=178.89 Aligned_cols=99 Identities=34% Similarity=0.549 Sum_probs=86.2
Q ss_pred CCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397 43 GLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI 118 (203)
Q Consensus 43 ~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~ 118 (203)
++.+..|+.++ +||||||||++|||||+.+|.||||||.||+||.++...+.+.|.++.+ ++|||++.|.++.
T Consensus 589 ~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST-- 665 (716)
T KOG0058|consen 589 NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST-- 665 (716)
T ss_pred hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--
Confidence 35556677776 6999999999999999999999999999999999999999999988764 4888888888752
Q ss_pred hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+.+|+|.|+++|+++..|+.+++++
T Consensus 666 ------------------------------------------V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 666 ------------------------------------------VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred ------------------------------------------hhhccEEEEEcCCeEEecccHHHHhh
Confidence 56799999999999999999888763
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=4.5e-20 Score=192.23 Aligned_cols=118 Identities=21% Similarity=0.204 Sum_probs=96.3
Q ss_pred CCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 23 ISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 23 ~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
-|+.++++. .+.+.++++..++.+. .|+.+ .+||||||||++|||||+.+|+||+|||||++||
T Consensus 1327 GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1327 GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 377777642 3556677777665433 34444 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.+.+.+.+.|++.. +++|+|+++|.++. ...||+
T Consensus 1407 ~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--------------------------------------------I~~~Dr 1441 (1622)
T PLN03130 1407 VRTDALIQKTIREEF-KSCTMLIIAHRLNT--------------------------------------------IIDCDR 1441 (1622)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEEeCChHH--------------------------------------------HHhCCE
Confidence 999999999999874 47888888888642 345999
Q ss_pred EEEEeCCeEEeeCCcccch
Q psy8397 167 LYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~ 185 (203)
|+||++|+|++.|+|++++
T Consensus 1442 IlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1442 ILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999999876
No 343
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.82 E-value=1.1e-19 Score=180.84 Aligned_cols=119 Identities=27% Similarity=0.410 Sum_probs=102.1
Q ss_pred CCHhHHHhHH------HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397 23 ISVDDILDTI------GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 23 ~~~~~~~~~~------~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~ 92 (203)
+|+.|.++.. .+..+.|+.+||.. ..++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..
T Consensus 792 ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~ 871 (943)
T PRK00349 792 MTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRK 871 (943)
T ss_pred CcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHH
Confidence 6777765442 23456788999986 579999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397 93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI-- 170 (203)
Q Consensus 93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl-- 170 (203)
+++.|+++.++|.|||++||+++ .+ ..||+++.|
T Consensus 872 L~~~L~~l~~~G~TVIiitH~~~-------------------------------------------~i-~~aD~ii~Lgp 907 (943)
T PRK00349 872 LLEVLHRLVDKGNTVVVIEHNLD-------------------------------------------VI-KTADWIIDLGP 907 (943)
T ss_pred HHHHHHHHHhCCCEEEEEecCHH-------------------------------------------HH-HhCCEEEEecC
Confidence 99999999877888888888763 23 579999999
Q ss_pred ----eCCeEEeeCCcccch
Q psy8397 171 ----AEGHCVYKGSSANTI 185 (203)
Q Consensus 171 ----~~G~i~~~g~~~~~~ 185 (203)
.+|++++.|+++++.
T Consensus 908 ~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 908 EGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CcCCCCCEEEEeCCHHHHH
Confidence 799999999998775
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=5.2e-20 Score=190.31 Aligned_cols=83 Identities=33% Similarity=0.414 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 33 GLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
+.+.++++.+++.+. .+.+..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 456677777766543 245567899999999999999999999999999999999999999999999987
Q ss_pred h-CCCeEEEEecCCC
Q psy8397 102 R-GGRTIVCTIHQPS 115 (203)
Q Consensus 102 ~-~g~tvi~~tH~~~ 115 (203)
+ +|+|+|++||+++
T Consensus 627 ~~~g~TvIiIsHrls 641 (1466)
T PTZ00265 627 GNENRITIIIAHRLS 641 (1466)
T ss_pred hcCCCEEEEEeCCHH
Confidence 5 4788888888864
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.82 E-value=6.9e-20 Score=190.03 Aligned_cols=119 Identities=22% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397 23 ISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86 (203)
Q Consensus 23 ~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD 86 (203)
-|+.++++ ..+.+.++++..++.+. .|+.+ .+||||||||++|||||+.+|+||+|||||++||
T Consensus 1374 gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1374 GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 37777765 24566777777766432 35555 4599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~ 166 (203)
+.+.+.+.+.|++.. +++|+|+++|+++ ....||+
T Consensus 1454 ~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--------------------------------------------ti~~~Dr 1488 (1522)
T TIGR00957 1454 LETDNLIQSTIRTQF-EDCTVLTIAHRLN--------------------------------------------TIMDYTR 1488 (1522)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCHH--------------------------------------------HHHhCCE
Confidence 999999999998864 4678888888764 2456999
Q ss_pred EEEEeCCeEEeeCCcccchh
Q psy8397 167 LYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 167 v~vl~~G~i~~~g~~~~~~~ 186 (203)
|+||++|+|++.|+|+++..
T Consensus 1489 IlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1489 VIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 346
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=7.8e-20 Score=170.71 Aligned_cols=109 Identities=24% Similarity=0.440 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
++.++++.+.+++. ...+.++++||||.||||.|||.|..+|++|||||||.|.|..++.+++++|++++++|.+||++
T Consensus 378 ~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~i 457 (500)
T COG1129 378 RALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI 457 (500)
T ss_pred HHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEE
Confidence 45678888999885 56789999999999999999999999999999999999999999999999999999777777777
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN 183 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~ 183 (203)
|-++. ++..+||||+||++|+++..-+.++
T Consensus 458 SSElp-------------------------------------------Ell~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 458 SSELP-------------------------------------------ELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred eCChH-------------------------------------------HHHhhCCEEEEEECCEEEEEecccc
Confidence 76653 4788999999999999988655544
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.82 E-value=6.8e-20 Score=145.32 Aligned_cols=76 Identities=32% Similarity=0.508 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
.+||+||+||++|||||+.+|++++|||||+|||+.++..+.+.++++ +.|+|++||+++
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~----------------- 128 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY----------------- 128 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-----------------
Confidence 349999999999999999999999999999999999999999999886 368888888853
Q ss_pred hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
.+..+||+++++++|+
T Consensus 129 --------------------------~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 129 --------------------------FLDQVATKIIELEDGK 144 (144)
T ss_pred --------------------------HHHHhCCEEEEEeCCC
Confidence 3667899999999885
No 348
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=2.2e-19 Score=178.49 Aligned_cols=119 Identities=26% Similarity=0.400 Sum_probs=100.1
Q ss_pred CCCHhHHHhHH------HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHH
Q psy8397 22 RISVDDILDTI------GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELID---NPPIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 22 ~~~~~~~~~~~------~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~---~P~vLlLDEPt~gLD~~~~~ 91 (203)
.+|++|..+.. .+..++++.+||.. ..++++.+|||||+||+.||++|+. +|++++|||||+|||+..+.
T Consensus 789 ~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~ 868 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 868 (924)
T ss_pred CCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHH
Confidence 35666654432 23456888999986 4799999999999999999999997 59999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE-
Q psy8397 92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI- 170 (203)
Q Consensus 92 ~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl- 170 (203)
.+++.|+++.++|.|||++||+++ .+ ..||++++|
T Consensus 869 ~L~~~L~~l~~~G~TVIvi~H~~~-------------------------------------------~i-~~aD~ii~Lg 904 (924)
T TIGR00630 869 KLLEVLQRLVDQGNTVVVIEHNLD-------------------------------------------VI-KTADYIIDLG 904 (924)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEec
Confidence 999999999877888888888753 23 569999999
Q ss_pred -----eCCeEEeeCCcccc
Q psy8397 171 -----AEGHCVYKGSSANT 184 (203)
Q Consensus 171 -----~~G~i~~~g~~~~~ 184 (203)
++|++++.|+++++
T Consensus 905 p~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 905 PEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCccCCCCEEEEeCCHHHh
Confidence 79999999998764
No 349
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=1.7e-19 Score=187.27 Aligned_cols=108 Identities=29% Similarity=0.446 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 33 GLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~---~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
+++ ++++.+||.+. .++++.+|||||+||++||++|+ .+|+++||||||+|||+.+++.+++.|++++++|.|||
T Consensus 788 ~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVI 866 (1809)
T PRK00635 788 EKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866 (1809)
T ss_pred HHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 345 47889999886 79999999999999999999998 69999999999999999999999999999987788888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~ 182 (203)
++||+++ .+ ..||++++|. +|++++.|+++
T Consensus 867 iIsHdl~-------------------------------------------~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 867 IIEHNMH-------------------------------------------VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEeCCHH-------------------------------------------HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 8888863 34 7899999996 78999999998
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 903 el~ 905 (1809)
T PRK00635 903 ELI 905 (1809)
T ss_pred HHH
Confidence 765
No 350
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=1.4e-19 Score=187.40 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=104.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~ 70 (203)
...+.+|.. .++. -|+.++++ ..+.+.++++.+++.+. .++.++ +||||||||++|||||+
T Consensus 1293 ~is~IpQdp--~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271 1293 AFGVIPQKV--FIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred ceEEEeCCC--ccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 345556543 2333 48888875 35678888998887543 344443 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|.++
T Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~----------------------------------- 1413 (1490)
T TIGR01271 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE----------------------------------- 1413 (1490)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-----------------------------------
Confidence 9999999999999999999999999999864 4678888888763
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+|+..|+|+++.
T Consensus 1414 ---------ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1414 ---------ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred ---------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 23469999999999999999999876
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=2.4e-19 Score=172.98 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=81.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccC---------CCCCHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLC---------GRLSGGQKKRLS 64 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v---------~~LSgGqrqrl~ 64 (203)
...+++|.. .++.. |+.|++.. .+++.++++.+++.+..+++. ++||||||||++
T Consensus 516 ~i~~v~Q~~--~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 516 KLFYVPQRP--YMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA 592 (659)
T ss_pred cEEEECCCC--CCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence 345666543 23333 88876532 356788899999987766643 689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 65 IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 65 iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
|||||+++|+++||||||+|||+.+.+.+.+.+++ .|.|+|++||+++
T Consensus 593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~ 640 (659)
T TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS 640 (659)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH
Confidence 99999999999999999999999999999988765 3788888888864
No 352
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=1.6e-19 Score=187.67 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=103.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~ 71 (203)
..+.+|.. .++. -|+.++++. .+.+.++++..++.+. .|+.+ .+||||||||++|||||+.
T Consensus 1386 I~iVpQdp--~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1386 FSMIPQDP--VLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred ceEECCCC--cccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 44555432 2333 488887653 4677888888887553 34444 4699999999999999999
Q ss_pred C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 N-PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~-P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+ |+||||||||++||+.+.+.+.+.|++.. +++|+|+++|.++
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~----------------------------------- 1506 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH----------------------------------- 1506 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH-----------------------------------
Confidence 6 89999999999999999999999998853 4678888888763
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+|++.|++++++
T Consensus 1507 ---------ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1507 ---------TVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred ---------HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 34679999999999999999999886
No 353
>KOG0057|consensus
Probab=99.81 E-value=9.8e-20 Score=170.29 Aligned_cols=110 Identities=26% Similarity=0.419 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 32 IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
.++|.+..+..|+.+. ...+-..|||||||||+||||++.+|+|++||||||+||..+.+++++.+..
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~- 532 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD- 532 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-
Confidence 3445555555555332 3344456999999999999999999999999999999999999999999988
Q ss_pred HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
...|+|+|++-|+++ ....||+|+++++|++...|+
T Consensus 533 ~~~~rTvI~IvH~l~--------------------------------------------ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 533 VMSGRTVIMIVHRLD--------------------------------------------LLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hcCCCeEEEEEecch--------------------------------------------hHhcCCEEEEEECCeeEEecc
Confidence 445677777777753 467899999999999999999
Q ss_pred cccchh
Q psy8397 181 SANTIP 186 (203)
Q Consensus 181 ~~~~~~ 186 (203)
.++++.
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 998875
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=2.3e-19 Score=185.93 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=99.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~ 70 (203)
...|+.|... + .+-|+.|++. ..+++.++++..++.+. .++.++ +||||||||++||||+.
T Consensus 680 ~Iayv~Q~p~--L-f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 680 SVAYVPQVSW--I-FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cEEEEcCccc--c-ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 3556665422 2 3468888764 35567777777766432 234444 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|+++||||||++||+.+.+.+++. ++.+ .+|+|+|++||+++
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~---------------------------------- 801 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH---------------------------------- 801 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh----------------------------------
Confidence 99999999999999999999988764 5443 35778888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+++..|+.+++.
T Consensus 802 ----------~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 802 ----------FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred ----------hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 35679999999999999999988775
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2e-19 Score=143.26 Aligned_cols=61 Identities=44% Similarity=0.822 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
|||||+||++||++++.+|++++|||||+|||+.++..+++.++++.++++|+|++||+++
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999999999999999999999999999999999999999999998766778888888754
No 356
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=2e-19 Score=150.71 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=68.0
Q ss_pred HHHcCCcccccccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
+...++.+..++++.+|||||+||++||++|+. +|+++||||||+|||+.....+.+.+++++++|.|+|
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii 187 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG 187 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 455556778899999999999999999999985 5789999999999999999999999999986688888
Q ss_pred EEecCCC
Q psy8397 109 CTIHQPS 115 (203)
Q Consensus 109 ~~tH~~~ 115 (203)
++||+++
T Consensus 188 ~itH~~~ 194 (213)
T cd03279 188 VISHVEE 194 (213)
T ss_pred EEECchH
Confidence 8888864
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=3.8e-19 Score=152.71 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=117.6
Q ss_pred ecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8397 15 ISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPT 82 (203)
Q Consensus 15 ~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt 82 (203)
+..-|.+.+|..|+.. ..++++++++...|.++.+.|++++|.||+-||++|.|...+|++||+||-.
T Consensus 96 lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 96 LGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred cccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 3444667788888653 3567888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh
Q psy8397 83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE 162 (203)
Q Consensus 83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~ 162 (203)
+-.|+.-+++..+.+.++.+++.|||++||+++ .+.+
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-------------------------------------------~I~~ 212 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-------------------------------------------AIKQ 212 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-------------------------------------------HHHH
Confidence 999999999999999999877788888888753 5889
Q ss_pred hcCEEEEEeCCeEEeeCCcccchhHHHh
Q psy8397 163 MVDHLYVIAEGHCVYKGSSANTIPYLQT 190 (203)
Q Consensus 163 ~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 190 (203)
+||+++++++|++...|++++++++.+.
T Consensus 213 ~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 213 YCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred hcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 9999999999999999999999986554
No 358
>KOG0065|consensus
Probab=99.80 E-value=6.6e-20 Score=184.27 Aligned_cols=128 Identities=37% Similarity=0.678 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397 34 LVDDILDTIGLVLSKHTLCG-----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI 107 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~-----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv 107 (203)
..+.+++.+||..++|+.++ ..|||||+||++|-+++.+|+++++||+|.|||..+.-++.+.|+++++- +.|.
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 45688999999999999887 49999999999999999999999999999999999999999999999853 5555
Q ss_pred EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhH
Q psy8397 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPY 187 (203)
Q Consensus 108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~ 187 (203)
+++-+++ ..++.+++|.|++|.+|+++|.|+.+++.+|
T Consensus 315 ~vsi~Q~------------------------------------------s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~y 352 (1391)
T KOG0065|consen 315 LVSILQP------------------------------------------SPEIYDLFDDVILLSEGYQIYQGPRDEVLPY 352 (1391)
T ss_pred EEEeccC------------------------------------------ChHHHHhhhheeeeeccceEEeccHHHHHHH
Confidence 5555554 4568999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCC
Q psy8397 188 LQTIGLHCPQYHNPAD 203 (203)
Q Consensus 188 ~~~~g~~~p~~~~~~d 203 (203)
|+..|+.||+.+++||
T Consensus 353 Fe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 353 FEDMGFKCPPRKGTAD 368 (1391)
T ss_pred HHhcCccCCCccCHHH
Confidence 9999999999999987
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=4.1e-19 Score=150.90 Aligned_cols=129 Identities=21% Similarity=0.302 Sum_probs=105.9
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------------HHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------------IGLVDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~ 67 (203)
..++||.+.+.-.+.+|++|++.. ++...+-+..+ ||++..+.+++-|||||||-++++.
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M 161 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM 161 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence 456788888877888999998642 22334455554 5678999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
|-++.|++|||||-|++|||.....+++.-.+..++ ..|.+|+||.+
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-------------------------------- 209 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-------------------------------- 209 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH--------------------------------
Confidence 999999999999999999999999999998888754 45666666654
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
+ .+..+-+|.+++++|+|+.+-
T Consensus 210 ----------~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 210 ----------E-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred ----------H-HHHhhCCeEEEEeCCeEEEEc
Confidence 3 468899999999999998764
No 360
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.79 E-value=4.8e-19 Score=165.66 Aligned_cols=105 Identities=30% Similarity=0.429 Sum_probs=81.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA~aL 69 (203)
...+++|... + ...|+.|++.. .+.+.++++..++.+.. |+. ..+||||||||++|||||
T Consensus 397 ~i~~v~Q~~~--l-f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 397 QIAWVPQHPF--L-FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred heEEEcCCCc--c-cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 4556665432 3 34688887642 35677788887775432 333 346999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+.+|++++|||||++||+.+.+.+.+.++++. +|+|+|++||+++
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~ 518 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA 518 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH
Confidence 99999999999999999999999999999875 5788888888763
No 361
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=7.3e-19 Score=182.67 Aligned_cols=104 Identities=27% Similarity=0.461 Sum_probs=92.2
Q ss_pred HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.|..+||... .++++.+|||||+|||.||++|+.+| ++++|||||+|||+..+..+++.|+++++.|.|||++||++
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4567899876 79999999999999999999999999 89999999999999999999999999987777888888775
Q ss_pred CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcccch
Q psy8397 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSANTI 185 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~~~~ 185 (203)
+ +.+.||++++|. +|++++.|+++++.
T Consensus 539 ~--------------------------------------------vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 539 Q--------------------------------------------MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred H--------------------------------------------HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 2 457899999996 78999999988763
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=7.1e-19 Score=183.33 Aligned_cols=131 Identities=24% Similarity=0.336 Sum_probs=100.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~ 70 (203)
...|+.|. + +-.+-|+.|++. ..+++.++++..+|.+. .++.++ +||||||||++||||+.
T Consensus 680 ~Iayv~Q~--p-~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly 756 (1622)
T PLN03130 680 TVAYVPQV--S-WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY 756 (1622)
T ss_pred eEEEEcCc--c-ccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 34555553 2 224468888764 25677778887776443 234444 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|+++||||||++||+...+.+++ .++.+. +|+|+|++||+++
T Consensus 757 ~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~---------------------------------- 801 (1622)
T PLN03130 757 SNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH---------------------------------- 801 (1622)
T ss_pred CCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh----------------------------------
Confidence 9999999999999999999988865 555543 4778888888753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....+|+|++|++|+++..|+.+++.
T Consensus 802 ----------~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 802 ----------FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred ----------HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 35679999999999999999988775
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=1.5e-18 Score=180.40 Aligned_cols=131 Identities=26% Similarity=0.304 Sum_probs=97.5
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----HHHHHHH---------HHHc--CCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDI---------LDTI--GLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~---------L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..|++|... + ...|+.|++.. .+++.++ ++.+ |+....+.+..+||||||||++|||||+.
T Consensus 723 i~yv~Q~~~--l-~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~ 799 (1560)
T PTZ00243 723 IAYVPQQAW--I-MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799 (1560)
T ss_pred EEEEeCCCc--c-CCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 456666432 2 24688887532 2223333 3344 55556678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|+++||||||++||+...+.+++.+.....+|+|+|++||+++
T Consensus 800 ~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~------------------------------------ 843 (1560)
T PTZ00243 800 NRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH------------------------------------ 843 (1560)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH------------------------------------
Confidence 99999999999999999999888743222224778888888753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||++++|++|++++.|+++++.
T Consensus 844 --------~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 844 --------VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred --------HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 23579999999999999999988764
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=7e-19 Score=166.17 Aligned_cols=105 Identities=27% Similarity=0.451 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
.++..++..+|+... ++++++||||||.||+||++|+.+|++|||||||++||..+...+-+.|+... | |+|+|||
T Consensus 133 ~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSH 208 (530)
T COG0488 133 ARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSH 208 (530)
T ss_pred HHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeC
Confidence 567788888999877 99999999999999999999999999999999999999999999999988643 5 7788887
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE-EeeCCcccc
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC-VYKGSSANT 184 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i-~~~g~~~~~ 184 (203)
|- .++-+.|++|+-++.|++ .|.|..+..
T Consensus 209 DR-------------------------------------------~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 209 DR-------------------------------------------YFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred CH-------------------------------------------HHHHHHhhheEEecCCceeEecCCHHHH
Confidence 72 367889999999999985 567766543
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.78 E-value=1.2e-18 Score=145.09 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=75.7
Q ss_pred ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPT 82 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt 82 (203)
...+.||....+|. .. ..+++.++++. .+..++++.+||||||||++||++++ .+|++++|||||
T Consensus 77 ~v~~vfq~~~~~~~----~~----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 77 EVTLTFDNSDGRYS----II----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred EEEEEEEcCCCcee----EE----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 34566765554321 10 13467777777 55678999999999999999999997 467999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+|||+..+..+++.|+++.+ +.|||++||++
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 146 AALDDANVERFARLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH
Confidence 99999999999999999864 57788888875
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=2e-18 Score=178.89 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=96.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..|++|.. .++. .|+.|++.. ..+..++++..+|.+ ....+..+||||||||++||||++.
T Consensus 489 iayv~Q~~--~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~ 565 (1490)
T TIGR01271 489 ISFSPQTS--WIMP-GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK 565 (1490)
T ss_pred EEEEeCCC--ccCC-ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc
Confidence 45666643 2333 488887642 123334444333321 2344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|+++||||||+|||+..++.+++. ++++. +|+|+|++||+++
T Consensus 566 ~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~----------------------------------- 609 (1490)
T TIGR01271 566 DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE----------------------------------- 609 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-----------------------------------
Confidence 9999999999999999999999984 56654 4788888888864
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|+++..|+++++.
T Consensus 610 --------~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 610 --------HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred --------HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 23 459999999999999999988775
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=2.4e-18 Score=178.69 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=97.2
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..|++|.. .+ ...|+.|++.. .++.+++++..++. ...+.+..+||||||||++||||++.
T Consensus 701 i~yv~Q~~--~l-~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 701 VAYVPQQA--WI-QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred EEEEcCCc--cc-cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 44666642 23 34688887642 23344444433322 12356677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+|++++|||||++||+.+.+.+++.+.+.. .+|+|+|++||+++
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~---------------------------------- 823 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS---------------------------------- 823 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh----------------------------------
Confidence 999999999999999999999999887542 24677777777753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||++++|++|+++..|+++++.
T Consensus 824 ----------~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 824 ----------YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred ----------hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 23459999999999999999988765
No 368
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=2.7e-18 Score=147.01 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCc--------------------ccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCC
Q psy8397 31 TIGLVDDILDTIGLV--------------------LSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLD 86 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~--------------------~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD 86 (203)
..+++.++|+.+|+. +..+.++.+||||||||++||++|+ .+|++++|||||+|||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 346788999999986 4457889999999999999999998 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 87 SNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+..+++.|+++. +|.|+|++||+.
T Consensus 203 ~~~~~~~~~~l~~~~-~g~~ii~iSH~~ 229 (251)
T cd03273 203 LSHTQNIGRMIKTHF-KGSQFIVVSLKE 229 (251)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 999999999999985 477888888873
No 369
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=2.9e-18 Score=143.30 Aligned_cols=133 Identities=26% Similarity=0.372 Sum_probs=114.8
Q ss_pred EEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 10 WCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGL-VLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L-~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..||..+..+++++.+..+++ +.+++.+.|..+|| .+.+|-++..||-||||||++||||+.+|++
T Consensus 91 MiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i 170 (267)
T COG4167 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI 170 (267)
T ss_pred eeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE
Confidence 457788888888887777653 46778889999998 4788999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
++.||..++||...+..+.+++-+|.++ |.+-|+++..+
T Consensus 171 IIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl---------------------------------------- 210 (267)
T COG4167 171 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI---------------------------------------- 210 (267)
T ss_pred EEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh----------------------------------------
Confidence 9999999999999999999999999864 66666666554
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
. .+..++|.|+||++|++++.|++++++
T Consensus 211 --G-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 211 --G-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred --h-HhhhhcccEEEEecCceeecCChhhhh
Confidence 2 477899999999999999999999875
No 370
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=142.07 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEE
Q psy8397 32 IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVC 109 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~ 109 (203)
+..+.++|..+++.+ ..++++.+||||||||++|+|.|..-|+||+|||||++||+.+.+.+-++|.++.+ +.++++.
T Consensus 110 r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~W 189 (223)
T COG4619 110 RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLW 189 (223)
T ss_pred hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEE
Confidence 456778999999974 57899999999999999999999999999999999999999999999999999874 3445555
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i 175 (203)
+||+ ++ +..+++|+++-+..|++
T Consensus 190 iTHd------------------------------------------~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 190 ITHD------------------------------------------KD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred EecC------------------------------------------hH-HHhhhhheEEEeccCcc
Confidence 5554 44 46789999999999874
No 371
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.76 E-value=2.5e-18 Score=160.84 Aligned_cols=104 Identities=32% Similarity=0.412 Sum_probs=81.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL 69 (203)
...+++|... + .+-|+.|++.. .+++.++++..++.+. .|+.++ +||||||||++|||||
T Consensus 409 ~i~~V~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 409 RISVFAQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred heEEEccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 3455555322 2 34588887542 4677788888877543 345544 5999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.+|++|+|||||++||+.+.+.+.+.++++ .+++|+|++||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 9999999999999999999999999999976 3589999999974
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=3.1e-18 Score=144.94 Aligned_cols=66 Identities=27% Similarity=0.429 Sum_probs=58.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
..+.++..||||||||++||++|+. +|++++|||||+|||+.+++.+++.|+++.+ ++|||++||.
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~ 220 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR 220 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 4568899999999999999999973 6899999999999999999999999999864 6777777776
No 373
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=2.6e-18 Score=143.23 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---C
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG---G 104 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL----~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~---g 104 (203)
...+.++++. .+..++++++||+|||||++||+++ +.+|++++|||||+|||+..+..+.+.|+++..+ +
T Consensus 90 ~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 90 QDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 3567777776 6678999999999999999999999 5899999999999999999999999999997642 3
Q ss_pred CeEEEEecCCC
Q psy8397 105 RTIVCTIHQPS 115 (203)
Q Consensus 105 ~tvi~~tH~~~ 115 (203)
.|||++||+++
T Consensus 167 ~~iii~th~~~ 177 (198)
T cd03276 167 QFIFITPQDIS 177 (198)
T ss_pred EEEEEECCccc
Confidence 57888888865
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=5.1e-18 Score=145.25 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCccc----------------------ccccCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCC
Q psy8397 32 IGLVDDILDTIGLVLS----------------------KHTLCGRLSGGQKKRLSIALELIDN----PPIMFLDEPTTGL 85 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~----------------------~~~~v~~LSgGqrqrl~iA~aL~~~----P~vLlLDEPt~gL 85 (203)
.+.++++++.+|+... .++++.+||||||||++||++++.+ |+++||||||+||
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 3456788888888422 2345689999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 86 DSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
|+..+..+.+.|+++.++|.|+|++||++
T Consensus 191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~ 219 (247)
T cd03275 191 DNTNVGKVASYIREQAGPNFQFIVISLKE 219 (247)
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence 99999999999999986677888888773
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.75 E-value=4.4e-18 Score=158.30 Aligned_cols=103 Identities=31% Similarity=0.486 Sum_probs=91.6
Q ss_pred CCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397 43 GLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI 118 (203)
Q Consensus 43 ~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~ 118 (203)
.+.+-.++.++ .||||||||+++||||-.+|.+++||||-++||....+.+.+.|.+++++|.|+|++||.|+
T Consensus 457 ~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--- 533 (580)
T COG4618 457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--- 533 (580)
T ss_pred hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH---
Confidence 34555677776 59999999999999999999999999999999999999999999999988888888888764
Q ss_pred hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397 119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQ 189 (203)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 189 (203)
+...+|+|++|++|++...|+.+++...+.
T Consensus 534 -----------------------------------------~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 534 -----------------------------------------ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred -----------------------------------------HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 577899999999999999999999886554
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=7.9e-18 Score=141.78 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=67.4
Q ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
.++++.+++.+..+++++.||+|||||++||++++. +|++++|||||+|||+.++..+++.++++. ++.|+|++|
T Consensus 109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs 187 (212)
T cd03274 109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVIS 187 (212)
T ss_pred CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 456678888888899999999999999999999974 579999999999999999999999999985 356677777
Q ss_pred cC
Q psy8397 112 HQ 113 (203)
Q Consensus 112 H~ 113 (203)
|+
T Consensus 188 ~~ 189 (212)
T cd03274 188 LR 189 (212)
T ss_pred Cc
Confidence 76
No 377
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.5e-17 Score=152.12 Aligned_cols=98 Identities=34% Similarity=0.567 Sum_probs=85.5
Q ss_pred CcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhh
Q psy8397 44 LVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIF 119 (203)
Q Consensus 44 L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~ 119 (203)
+.+..++.++ .|||||||||+|||+++.+|++|+|||.||+||..+.+.+...|++.. .|+|.+++.|.++.
T Consensus 385 lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--- 460 (497)
T COG5265 385 LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--- 460 (497)
T ss_pred CchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh---
Confidence 4455667777 499999999999999999999999999999999999999999999976 67888888888763
Q ss_pred hhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 120 EMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.--+|.|+|+++|+|++.|+.++++.
T Consensus 461 -----------------------------------------i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 461 -----------------------------------------IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred -----------------------------------------ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 23489999999999999999988764
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.70 E-value=5.6e-17 Score=135.65 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=60.3
Q ss_pred cccCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 49 HTLCGRLSGGQKKR------LSIALELIDNPPIMFLDEPTTGLDSNSTN-QCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 49 ~~~v~~LSgGqrqr------l~iA~aL~~~P~vLlLDEPt~gLD~~~~~-~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
++++++||+||+|| ++||++++.+|++++|||||++||+..+. .+.+.|+++.++ |.|||++||++
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 77899999999996 78999999999999999999999999999 999999999865 77888888875
No 379
>KOG0054|consensus
Probab=99.68 E-value=2.6e-16 Score=160.49 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=103.7
Q ss_pred eeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL~~ 71 (203)
..|+.|. + +-.+-|++|+.- .++|.+++++...|.+..+..+ -+||||||||++||||+-+
T Consensus 584 iaYv~Q~--p-WI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~ 660 (1381)
T KOG0054|consen 584 VAYVPQQ--P-WIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ 660 (1381)
T ss_pred EEEeccc--c-HhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence 4555542 2 446678998763 3677888888887765433332 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+.+++|||-|.+++|....+.+++-.-...-+++|+|++||+++
T Consensus 661 ~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~------------------------------------ 704 (1381)
T KOG0054|consen 661 DADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ------------------------------------ 704 (1381)
T ss_pred cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh------------------------------------
Confidence 99999999999999999999999744433334677777777642
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
....+|.|++|++|+|...|+.+++.+
T Consensus 705 --------~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 705 --------FLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred --------hhhhCCEEEEecCCeEecccCHHHHHh
Confidence 467899999999999999999998873
No 380
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.1e-16 Score=128.19 Aligned_cols=95 Identities=28% Similarity=0.416 Sum_probs=86.9
Q ss_pred CCCCHhHHHhHH---------HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397 21 HRISVDDILDTI---------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 21 ~~~~~~~~~~~~---------~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~ 91 (203)
..+|+.|++... ..+.++++.+||....|.++++||-||||||+|||-++..+++.|||||+++||.....
T Consensus 88 ~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 88 TELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred chhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 457888887543 34678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 92 QCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 92 ~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+-..+..-..+|--||.+||++.
T Consensus 168 ~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 168 LLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999998888999999999975
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=5.9e-16 Score=146.42 Aligned_cols=115 Identities=24% Similarity=0.375 Sum_probs=92.3
Q ss_pred CCCHhHHHhH------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy8397 22 RISVDDILDT------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94 (203)
Q Consensus 22 ~~~~~~~~~~------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~ 94 (203)
..|+-|.+.. ...+...|..|++. +...++++.||||||.|+.||+.++.+|.+|||||||+.||..++..+-
T Consensus 400 ~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe 479 (530)
T COG0488 400 DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479 (530)
T ss_pred cCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHH
Confidence 3456555432 46788899999996 5668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 95 ~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
+.|.... -|||+||||. . ++..+|++++.+.+ +
T Consensus 480 ~aL~~f~---Gtvl~VSHDr------------------------------------------~-Fl~~va~~i~~~~~-~ 512 (530)
T COG0488 480 EALLDFE---GTVLLVSHDR------------------------------------------Y-FLDRVATRIWLVED-K 512 (530)
T ss_pred HHHHhCC---CeEEEEeCCH------------------------------------------H-HHHhhcceEEEEcC-c
Confidence 8888765 3666666663 2 68889999999998 4
Q ss_pred E-EeeCCccc
Q psy8397 175 C-VYKGSSAN 183 (203)
Q Consensus 175 i-~~~g~~~~ 183 (203)
+ .+.|..++
T Consensus 513 ~~~~~g~y~~ 522 (530)
T COG0488 513 VEEFEGGYED 522 (530)
T ss_pred eeEcCCCHHH
Confidence 4 34465543
No 382
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=4.4e-16 Score=126.75 Aligned_cols=101 Identities=26% Similarity=0.320 Sum_probs=87.5
Q ss_pred cccccCCCCHhHHH-----------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8397 16 SAQYSHRISVDDIL-----------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84 (203)
Q Consensus 16 ~~~~~~~~~~~~~~-----------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~g 84 (203)
.+.+++.++|.+++ .+++.+...|++.||....++.+.+||||||.||++-|+|+..|+.++||||++.
T Consensus 85 D~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 85 DALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred ccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 34456667877754 2466688999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCc
Q psy8397 85 LDSNSTNQCVAML-KALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 85 LD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~ 116 (203)
||..-+..+.+.+ .++..-|.-+|++|||...
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999955 4555669999999999764
No 383
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=4.7e-16 Score=131.18 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=60.2
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CeEEEEecCCC
Q psy8397 46 LSKHTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-G-RTIVCTIHQPS 115 (203)
Q Consensus 46 ~~~~~~v~~LSgGqrqrl~iA~aL----~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g-~tvi~~tH~~~ 115 (203)
+..+.++++|||||||++.+++++ +.+|+++|+||||+|||+..+..+++.++++.++ | .|+|++||++.
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~ 193 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL 193 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc
Confidence 345778899999999998877554 5899999999999999999999999999998765 5 57888888864
No 384
>KOG0056|consensus
Probab=99.65 E-value=6.4e-16 Score=143.99 Aligned_cols=100 Identities=32% Similarity=0.512 Sum_probs=86.8
Q ss_pred cCCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397 42 IGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117 (203)
Q Consensus 42 ~~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~ 117 (203)
+++.+..+++++ .|||||||||+|||+++..|.+++|||.||+||....+.+...|.++.. ++|-|++.|.++.
T Consensus 658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST- 735 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST- 735 (790)
T ss_pred hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-
Confidence 466677777777 5999999999999999999999999999999999999999999999874 6777777787753
Q ss_pred hhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 118 IFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.--+|.|+++++|+|++.|..++++.
T Consensus 736 -------------------------------------------ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 736 -------------------------------------------IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -------------------------------------------eecccEEEEEeCCeEeecCcHHHHHh
Confidence 23489999999999999999988864
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.65 E-value=3.7e-17 Score=135.76 Aligned_cols=120 Identities=24% Similarity=0.444 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-----NP--PIMFLDEPTTGLDSNSTNQCVAMLKALARG 103 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~-----~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~ 103 (203)
....+.++...++|.++..+.+..|||||-|||-+|...++ || ++|+||||.++||......+...|.++.+.
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 34567788899999999999999999999999999988775 33 599999999999999999999999999999
Q ss_pred CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397 104 GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN 183 (203)
Q Consensus 104 g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~ 183 (203)
|.||||++||++. -.+.+|+++++++|+++..|..++
T Consensus 182 G~~vims~HDLNh-------------------------------------------TLrhA~~~wLL~rG~l~~~G~~~e 218 (248)
T COG4138 182 GLAIVMSSHDLNH-------------------------------------------TLRHAHRAWLLKRGKLLASGRREE 218 (248)
T ss_pred CcEEEEeccchhh-------------------------------------------HHHHHHHHHHHhcCeEEeecchhh
Confidence 9999999999864 367899999999999999999998
Q ss_pred ch--hHHH-hcCC
Q psy8397 184 TI--PYLQ-TIGL 193 (203)
Q Consensus 184 ~~--~~~~-~~g~ 193 (203)
++ +++. .+|.
T Consensus 219 Vlt~~vL~q~fg~ 231 (248)
T COG4138 219 VLTPPVLAQAYGM 231 (248)
T ss_pred hcChHHHHHHhcc
Confidence 86 3453 3443
No 386
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=5.8e-16 Score=128.12 Aligned_cols=95 Identities=26% Similarity=0.389 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 31 TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
.+.++.++|..+++.+ +..-.+.++||||||||.|||.++.+-+||+|||||+.||...++-+.++|++-+..|.++|=
T Consensus 128 a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG 207 (235)
T COG4778 128 ARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG 207 (235)
T ss_pred HHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence 3567889999999964 567789999999999999999999999999999999999999999999999999889999999
Q ss_pred EecCCCchhhhhhhccc
Q psy8397 110 TIHQPSATIFEMVDHLG 126 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~ 126 (203)
+=|| ++.-.++|||+.
T Consensus 208 IFHD-eevre~vadR~~ 223 (235)
T COG4778 208 IFHD-EEVREAVADRLL 223 (235)
T ss_pred eecc-HHHHHHHhhhee
Confidence 9999 455666777763
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=1.3e-15 Score=140.72 Aligned_cols=91 Identities=26% Similarity=0.519 Sum_probs=82.5
Q ss_pred CHhHHHhHH---HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 24 SVDDILDTI---GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 24 ~~~~~~~~~---~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
+|.|++... ...+++.+.++|.+..++.+++||||+-||++||.+++.+.+++++||||+-||...|-...+.++++
T Consensus 180 ~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel 259 (591)
T COG1245 180 KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259 (591)
T ss_pred hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 666665432 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCC
Q psy8397 101 ARGGRTIVCTIHQP 114 (203)
Q Consensus 101 ~~~g~tvi~~tH~~ 114 (203)
.+.+++|+++.|||
T Consensus 260 ~~~~k~ViVVEHDL 273 (591)
T COG1245 260 AEDGKYVIVVEHDL 273 (591)
T ss_pred hccCCeEEEEechH
Confidence 97788888888886
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=140.95 Aligned_cols=112 Identities=23% Similarity=0.361 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 30 DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
..++.+.++++.|++. .....++.+||||++||+-+||.|..+|++|+..+||-|||..+...+.+.|.+++++|++|+
T Consensus 378 ~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVL 457 (501)
T COG3845 378 AIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457 (501)
T ss_pred HHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEE
Confidence 3466788999999986 556788999999999999999999999999999999999999999999999999998888888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
++|-+++ ++.++||||.||.+|+++...++++.
T Consensus 458 LiS~dLD-------------------------------------------Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 458 LISEDLD-------------------------------------------EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEehhHH-------------------------------------------HHHHhhheeeeeeCCceecccccccC
Confidence 8888765 48899999999999999998888764
No 389
>KOG0927|consensus
Probab=99.62 E-value=1.1e-15 Score=143.06 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
..++..+|..+|.. ...++++.+||||+|.|++|||+|..+|++|+|||||+|||+.+...+-+.|.+..+- ++|++
T Consensus 198 ~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi~ 275 (614)
T KOG0927|consen 198 EAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVIV 275 (614)
T ss_pred HHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEEE
Confidence 34566677777764 5678999999999999999999999999999999999999999999988888775421 78888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe-EEeeCCcccch
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH-CVYKGSSANTI 185 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~-i~~~g~~~~~~ 185 (203)
+|+-+ ++-.+|.+|+-+.+++ +.|.|+.+...
T Consensus 276 sh~QD-------------------------------------------fln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 276 SHSQD-------------------------------------------FLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred ecchh-------------------------------------------hhhhHhhhhheecccceeeecCCHHHHh
Confidence 88732 5778999999999998 67788776543
No 390
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.62 E-value=3.6e-15 Score=122.55 Aligned_cols=60 Identities=27% Similarity=0.426 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 55 LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.++++.++|.|+|++||++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 9999999999999996 69999999999999999999999999999886677888888875
No 391
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.60 E-value=7e-15 Score=142.86 Aligned_cols=120 Identities=26% Similarity=0.418 Sum_probs=100.1
Q ss_pred CCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397 23 ISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 23 ~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~ 92 (203)
|||+|-.+. ..+.-+.|..+||.. .+.++..+|||||.||+-||..|.... -+++|||||+||-....++
T Consensus 784 MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~k 863 (935)
T COG0178 784 MTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKK 863 (935)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHH
Confidence 677765443 223445677789975 468899999999999999999999887 8999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397 93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI-- 170 (203)
Q Consensus 93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl-- 170 (203)
+++.|.+|..+|.|||++.|.|+ +.+.||.|+=|
T Consensus 864 Ll~VL~rLvd~GnTViVIEHNLd--------------------------------------------VIk~AD~IIDLGP 899 (935)
T COG0178 864 LLEVLHRLVDKGNTVIVIEHNLD--------------------------------------------VIKTADWIIDLGP 899 (935)
T ss_pred HHHHHHHHHhCCCEEEEEecccc--------------------------------------------eEeecCEEEEcCC
Confidence 99999999988888888888864 56789998866
Q ss_pred ----eCCeEEeeCCcccchh
Q psy8397 171 ----AEGHCVYKGSSANTIP 186 (203)
Q Consensus 171 ----~~G~i~~~g~~~~~~~ 186 (203)
..|+|++.|+|+++..
T Consensus 900 eGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 900 EGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCceEEEecCHHHHHh
Confidence 4588999999998864
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=7.1e-16 Score=131.51 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCccc---ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCe
Q psy8397 31 TIGLVDDILDTIGLVLS---KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRT 106 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~---~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~t 106 (203)
.++++-++|..+|+.+. +..++.+|.-|+-|+|+||.|++.+|++|+.||||+.++|.++.+++++|..++++ |+|
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt 211 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT 211 (330)
T ss_pred hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence 36678899999999754 56789999999999999999999999999999999999999999999999999864 778
Q ss_pred EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
|++++||+. .+.+.||++-|+.-|+-+.+++.++++
T Consensus 212 ILL~s~Dl~-------------------------------------------~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 212 ILLISHDLQ-------------------------------------------MISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred EEEEcccHH-------------------------------------------HHHHHhhheEEEEecccccccchhHHh
Confidence 888888753 477899999999999999888877765
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.59 E-value=8.2e-15 Score=135.54 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=87.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhHHHH--------HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDTIGL--------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..|-+|.+++. ...||++++..... -.++++-++|.+..++++.+|||||.|||+||.+|..++++.+||
T Consensus 403 vSyKPQyI~~~--~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD 480 (591)
T COG1245 403 VSYKPQYISPD--YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD 480 (591)
T ss_pred EeecceeecCC--CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec
Confidence 34566777764 45788887654332 357788899999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
||++.||...|..+.+.|++...+ ++|.+++.||+
T Consensus 481 EPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 481 EPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred CchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 999999999999999999998854 66777777764
No 394
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=5.7e-15 Score=148.85 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=63.6
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 45 VLSKHTLCGRLSGGQKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
....++++++|||||++|++||++|+. +|++|||||||+|||+.+...+++.|+.+...|++|+||||++
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 345577899999999999999999986 7999999999999999999999999999987788888888875
Q ss_pred C
Q psy8397 115 S 115 (203)
Q Consensus 115 ~ 115 (203)
+
T Consensus 1021 ~ 1021 (1042)
T TIGR00618 1021 E 1021 (1042)
T ss_pred H
Confidence 3
No 395
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=5e-15 Score=128.92 Aligned_cols=60 Identities=33% Similarity=0.547 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 54 RLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.|||||+||+++|++++. +|++++|||||++||+..+..+.+.++++.+ +.|+|++||++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~ 233 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLP 233 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechH
Confidence 499999999999987654 9999999999999999999999999999863 57777777774
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.58 E-value=5e-15 Score=122.94 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=79.5
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCc
Q psy8397 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
.+..++..+..+...+++|+||||++.++++ +.+|+++|+|||++|+|+..+..++ ..++.+.+.|.|+|++||+.
T Consensus 75 ~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-- 151 (200)
T cd03280 75 IFADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-- 151 (200)
T ss_pred EEEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--
Confidence 3445555566677788999999999999987 4899999999999999999999996 47888876677888888862
Q ss_pred hhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 117 TIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
.+..+||++.++.+|++.+++
T Consensus 152 ------------------------------------------~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 152 ------------------------------------------ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred ------------------------------------------HHHHHHhcCCCeEEEEEEEec
Confidence 256788999999999988774
No 397
>KOG0054|consensus
Probab=99.57 E-value=1.3e-14 Score=148.28 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
.++|-||||.++|||||+++++||+|||+|+++|+.+-..+-+.|++-- .++|||.+.|.+..
T Consensus 1274 ~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T---------------- 1336 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT---------------- 1336 (1381)
T ss_pred ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch----------------
Confidence 4699999999999999999999999999999999999999999998832 36777777777642
Q ss_pred hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ --||||+||++|+|++.|+|.++..
T Consensus 1337 ---------------------------V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1337 ---------------------------V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ---------------------------h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 2 3499999999999999999998873
No 398
>KOG0062|consensus
Probab=99.56 E-value=1.2e-14 Score=135.59 Aligned_cols=105 Identities=29% Similarity=0.405 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+.+++-+..|||. +.+.+.+.+||||||-||+||.+...+|-+|+|||||+.||..+...+.+.|+.+. -.||++
T Consensus 459 ~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGVv~V 535 (582)
T KOG0062|consen 459 EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGVVLV 535 (582)
T ss_pred HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---CcEEEE
Confidence 45677889999996 66777799999999999999999999999999999999999988888887777665 245566
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSA 182 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~ 182 (203)
||+ .+ ++...|+.+++..+|++. ..|...
T Consensus 536 SHd------------------------------------------~~-fi~~~c~E~Wvve~g~vt~ieg~~~ 565 (582)
T KOG0062|consen 536 SHD------------------------------------------EE-FISSLCKELWVVEDGKVTPIEGGID 565 (582)
T ss_pred ECc------------------------------------------HH-HHhhcCceeEEEcCCcEEeeeccHH
Confidence 665 33 588899999999999975 345443
No 399
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=1.3e-14 Score=136.30 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=57.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 49 HTLCGRLSGGQKKRLSIALELI----------DNPPIMFLDEPT-TGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~----------~~P~vLlLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.++..||||||||++||++|+ .+|+++|||||| ++||+..+..+.+.|+++ .|.|||++||++
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~ 537 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD 537 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch
Confidence 3467899999999999999987 599999999998 789999999999999998 588999999985
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.53 E-value=3.7e-14 Score=114.23 Aligned_cols=63 Identities=29% Similarity=0.401 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 53 GRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+||+||+||+.+|++|.. +|+++|||||++|+|+..+..+.+.+.++..+|.++|++||+++
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 4699999999999999987 78999999999999999999999999987655778888888753
No 401
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.53 E-value=3e-14 Score=135.46 Aligned_cols=61 Identities=23% Similarity=0.462 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 53 GRLSGGQKKRLSIALELIDN----PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~----P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.|||||+||++||++++.. |+++||||||+|||+..+..+.+.|+++.+ |.|||++||++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~ 503 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP 503 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH
Confidence 46899999999999999985 699999999999999999999999999874 67888888875
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.51 E-value=4.9e-14 Score=108.80 Aligned_cols=73 Identities=30% Similarity=0.456 Sum_probs=60.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~ 83 (203)
..+.+|. ..++..+|+.++ ....++.++++.+++....++.+ ..||||||||++||+||+.+|+++||||||+
T Consensus 61 i~~~~~~--~~~~~~~tv~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 61 IGYVPQD--PQLFPGLTVREN-ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp EEEEESS--HCHHTTSBHHHH-HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccc--cccccccccccc-cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3444543 345677888887 55677899999999887777777 9999999999999999999999999999996
No 403
>KOG0062|consensus
Probab=99.50 E-value=4e-14 Score=132.15 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=73.7
Q ss_pred HHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 37 DILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 37 ~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+|..+|+++ ...+++++||||.|-|++|||||..+|++|||||||+.||..+...+-+.|.... .|+|++|||-.
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~ 256 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRN 256 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHH
Confidence 3888999974 5678999999999999999999999999999999999999999999888877754 89999999954
Q ss_pred chhhhhhhccc
Q psy8397 116 ATIFEMVDHLG 126 (203)
Q Consensus 116 ~~~~~~~~~~~ 126 (203)
. +-..|..|.
T Consensus 257 F-Ln~V~tdII 266 (582)
T KOG0062|consen 257 F-LNTVCTDII 266 (582)
T ss_pred H-HHHHHHHHH
Confidence 3 555565553
No 404
>KOG0927|consensus
Probab=99.50 E-value=2.6e-14 Score=134.02 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+.+..+|..+||. +....++++||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+.. -+||++
T Consensus 486 ~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~v 562 (614)
T KOG0927|consen 486 LEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLV 562 (614)
T ss_pred HHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeee
Confidence 45678899999998 67789999999999999999999999999999999999999999999988888765 367777
Q ss_pred ecCC
Q psy8397 111 IHQP 114 (203)
Q Consensus 111 tH~~ 114 (203)
|||.
T Consensus 563 SHDf 566 (614)
T KOG0927|consen 563 SHDF 566 (614)
T ss_pred echh
Confidence 7774
No 405
>PRK10869 recombination and repair protein; Provisional
Probab=99.48 E-value=1.6e-13 Score=130.49 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 54 RLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.|||||+||++||++++. +|+++|||||++|||+.....+.+.|+++.+ +.|||++||++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~ 493 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP 493 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 479999999999999997 6899999999999999999999999999863 57777777775
No 406
>PRK03918 chromosome segregation protein; Provisional
Probab=99.46 E-value=2e-13 Score=134.55 Aligned_cols=67 Identities=31% Similarity=0.466 Sum_probs=57.2
Q ss_pred ccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 48 KHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 48 ~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.+.++..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|..+...|.|||++||++
T Consensus 782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~ 854 (880)
T PRK03918 782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE 854 (880)
T ss_pred CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 35678899999999 45556678899999999999999999999999999999876667777777774
No 407
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.44 E-value=3.8e-13 Score=135.99 Aligned_cols=66 Identities=33% Similarity=0.363 Sum_probs=61.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELID--------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~--------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.++++++|||||+++++||++|+. +|++|||||||++||+.+...+++.|..+.+.|+||+++||.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~ 1016 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHV 1016 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecH
Confidence 457899999999999999999996 899999999999999999999999999998788899999985
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=3.7e-13 Score=114.30 Aligned_cols=73 Identities=22% Similarity=0.130 Sum_probs=56.8
Q ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCeEEE
Q psy8397 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL--IDNPPIMFLDEP---TTGLDSNSTNQCVAMLKALAR-GGRTIVC 109 (203)
Q Consensus 36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL--~~~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~-~g~tvi~ 109 (203)
+++++.+++.+. ..+.+|.|+++++.+++++ +.+|+++||||| |+++|+.+... ..++.+.+ .|.++|+
T Consensus 74 ~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli 148 (222)
T cd03285 74 DCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF 148 (222)
T ss_pred ceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence 445556665533 3678999999999999999 899999999999 99999988853 44455554 3778888
Q ss_pred EecC
Q psy8397 110 TIHQ 113 (203)
Q Consensus 110 ~tH~ 113 (203)
+||+
T Consensus 149 sTH~ 152 (222)
T cd03285 149 ATHF 152 (222)
T ss_pred Eech
Confidence 8885
No 409
>PRK01156 chromosome segregation protein; Provisional
Probab=99.38 E-value=3.9e-12 Score=126.25 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCcc----------------cccccCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397 34 LVDDILDTIGLVL----------------SKHTLCGRLSGGQKKRLSI------ALELIDNPPIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 34 ~v~~~L~~~~L~~----------------~~~~~v~~LSgGqrqrl~i------A~aL~~~P~vLlLDEPt~gLD~~~~~ 91 (203)
.+.+++..+|+.. ....++..|||||+++++| |++++.+|++++|||||+|||+..+.
T Consensus 765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~ 844 (895)
T PRK01156 765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT 844 (895)
T ss_pred HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence 4556777777641 1224688999999999975 58999999999999999999999999
Q ss_pred HHHHHHHHHH-hC-C-CeEEEEecCC
Q psy8397 92 QCVAMLKALA-RG-G-RTIVCTIHQP 114 (203)
Q Consensus 92 ~i~~~l~~l~-~~-g-~tvi~~tH~~ 114 (203)
.+.++++... .. | .|||++||++
T Consensus 845 ~l~~~l~~~~~~~~~~~~ii~ish~~ 870 (895)
T PRK01156 845 NLKDIIEYSLKDSSDIPQVIMISHHR 870 (895)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECch
Confidence 9999998643 32 2 3677777764
No 410
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.35 E-value=1.4e-12 Score=130.23 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=59.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
..+.++..|||||+++++||++++ .+|+++||||||+|||+..+..+.++|+.+.+ +.++|++||++.
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~ 1153 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG 1153 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh
Confidence 356788899999999999999984 67799999999999999999999999999864 467888888754
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.2e-12 Score=121.82 Aligned_cols=105 Identities=27% Similarity=0.442 Sum_probs=88.4
Q ss_pred HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.|..+||..+ +++..++|||||.||+-||.-+-.+= =+++||||+.||-+....++++.|+.|+..|.|+|++.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 3556688753 68999999999999999999987663 37799999999999999999999999997777777777773
Q ss_pred CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccchh
Q psy8397 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTIP 186 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~~ 186 (203)
.....+|+++=| ..|+|++.|+|++++.
T Consensus 544 --------------------------------------------dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 544 --------------------------------------------DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred --------------------------------------------HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 357789999865 4688999999999873
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.33 E-value=2.6e-12 Score=122.70 Aligned_cols=83 Identities=30% Similarity=0.443 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCcccccccC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy8397 32 IGLVDDILDTIGLVLSKHTLC------GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v------~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 105 (203)
.+.+.++|.++||.++.++.= ..||+||||||++||.|+++|++++|||.|++||+.+...+++.+++-- .+.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence 456788999999987765432 2599999999999999999999999999999999999999999988732 489
Q ss_pred eEEEEecCCC
Q psy8397 106 TIVCTIHQPS 115 (203)
Q Consensus 106 tvi~~tH~~~ 115 (203)
|||-++|...
T Consensus 566 tvISV~Hr~t 575 (604)
T COG4178 566 TVISVGHRPT 575 (604)
T ss_pred EEEEeccchh
Confidence 9999999975
No 413
>KOG0066|consensus
Probab=99.32 E-value=3.7e-12 Score=118.05 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLVLSKH-TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~-~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+.++..|-.|||...++ -++..||||||-||++|--.+..|+||||||||++||+.+...+.+.|.++. -.||++
T Consensus 681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~V 757 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMV 757 (807)
T ss_pred hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEE
Confidence 456778899999986665 4688999999999999999999999999999999999999999999988876 367888
Q ss_pred ecC
Q psy8397 111 IHQ 113 (203)
Q Consensus 111 tH~ 113 (203)
|||
T Consensus 758 sHD 760 (807)
T KOG0066|consen 758 SHD 760 (807)
T ss_pred ecc
Confidence 887
No 414
>KOG2355|consensus
Probab=99.29 E-value=9.7e-12 Score=105.87 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=100.4
Q ss_pred CCceeEEEeeeccc---ccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 5 NHGTIWCWQIISAQ---YSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 5 ~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
+-|+-|+--...+. +...+++...+. ..+|-+.+++.+++.- .-+...+|-|||+||.|+..|++.-++|
T Consensus 92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl--~WRmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL--RWRMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc--eEEEeeccccchhhhHHHHhcccceeEE
Confidence 34555555333322 122467766542 2355677788777753 2355678999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|||-|.-||..++..+++++++-.++ |.|||+.||..+
T Consensus 170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD---------------------------------------- 209 (291)
T KOG2355|consen 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD---------------------------------------- 209 (291)
T ss_pred EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc----------------------------------------
Confidence 999999999999999999999998764 999999999864
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~ 182 (203)
-++....+++.++.|+++..-+..
T Consensus 210 ---GLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 210 ---GLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred ---chhhcchhEEEecCCeeeeccccc
Confidence 256788899999999988744443
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=5.8e-12 Score=129.86 Aligned_cols=68 Identities=31% Similarity=0.381 Sum_probs=60.8
Q ss_pred cccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCCeEEEEecCCCc
Q psy8397 49 HTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-----RGGRTIVCTIHQPSA 116 (203)
Q Consensus 49 ~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-----~~g~tvi~~tH~~~~ 116 (203)
....+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+. ..|.|||++||++..
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence 3455789999999 9999999999999999999999999999999999888874 238899999999764
No 416
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=1.1e-11 Score=107.66 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 52 CGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+-+|+||||++++|++|+ .+|++++|||||++||+..+..+++.++++. .+++++|+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~ 247 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTD 247 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCC
Confidence 4458999999999999985 7999999999999999999999999887653 34555554
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.27 E-value=1.4e-11 Score=102.21 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=54.9
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCC
Q psy8397 43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+......+.+|++++| +..+.+++.+|+++||||||+|+|+..+..+.. .++.+.+.+.++|++||++
T Consensus 80 ~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 80 GAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred cCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3333445556678888776 666678889999999999999999999888755 5677776678888888874
No 418
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.24 E-value=1.8e-11 Score=122.79 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=56.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..+++..||||||++++||++++. +|+++|||||++|||+..+..+.++|+++.. +.++|++||+.
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~ 1137 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS 1137 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH
Confidence 345677899999999999999985 7899999999999999999999999998763 35666666663
No 419
>KOG0066|consensus
Probab=99.22 E-value=3.1e-12 Score=118.60 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 32 IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
..+++++|..+|+.. ..+++...+|||.|-||++||||..+|-+|.|||||+.||......+-..|+.+. +|++|+
T Consensus 389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIV 465 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIV 465 (807)
T ss_pred hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEE
Confidence 346778899999874 5688899999999999999999999999999999999999998888888888876 588888
Q ss_pred ecCCC
Q psy8397 111 IHQPS 115 (203)
Q Consensus 111 tH~~~ 115 (203)
|||-.
T Consensus 466 SHDQg 470 (807)
T KOG0066|consen 466 SHDQG 470 (807)
T ss_pred ecccc
Confidence 88853
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.22 E-value=8.1e-12 Score=102.70 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecC
Q psy8397 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~-g~tvi~~tH~ 113 (203)
++++..++..+..++..+++|+|++|...+.. .+.+|+++|+|||++|+|+.....+. ..++.+.++ |.++|++||+
T Consensus 43 d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 43 DRIFTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred ceEEEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 44566677777888889999999987433333 23599999999999999999887764 567777764 8999999999
Q ss_pred CC
Q psy8397 114 PS 115 (203)
Q Consensus 114 ~~ 115 (203)
++
T Consensus 122 ~~ 123 (185)
T smart00534 122 HE 123 (185)
T ss_pred HH
Confidence 63
No 421
>PRK02224 chromosome segregation protein; Provisional
Probab=99.18 E-value=6.5e-11 Score=117.16 Aligned_cols=64 Identities=38% Similarity=0.528 Sum_probs=54.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEecCC
Q psy8397 51 LCGRLSGGQKK------RLSIALELIDN-----P-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGR-TIVCTIHQP 114 (203)
Q Consensus 51 ~v~~LSgGqrq------rl~iA~aL~~~-----P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~-tvi~~tH~~ 114 (203)
.+..||||||+ |+++|++++.+ | +++||||||++||+..+..+.++|+.+...|. +||++||++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~ 854 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD 854 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence 46789999999 88999888864 3 67999999999999999999999999875554 677777775
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.16 E-value=5.2e-11 Score=109.18 Aligned_cols=104 Identities=27% Similarity=0.349 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCccc---ccccC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCC
Q psy8397 32 IGLVDDILDTIGLVLS---KHTLC--GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGR 105 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~---~~~~v--~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~ 105 (203)
.+.++.+|+.+.+.++ .|... -.||.|||+|+++--|++-+-+|++|||=.+-.||.-|+.|+..+-. ++++|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 4457777887776543 23333 26999999999999999999999999999999999999999986655 565577
Q ss_pred eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 106 TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 106 tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
||+.+||| . .-+..+||++.+.+|+++..-
T Consensus 501 TI~aIsHD------------------------------------------d--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 501 TIFAISHD------------------------------------------D--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEEEecC------------------------------------------c--hhhhhHHHHHHHhcCceeecc
Confidence 77777776 2 247789999999999998753
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.14 E-value=1.3e-10 Score=105.20 Aligned_cols=62 Identities=31% Similarity=0.411 Sum_probs=53.6
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 51 LCGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
....+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +.++++|||+++
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~ 340 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE 340 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh
Confidence 44579999999999999986 799999999999999999999999988764 357888888753
No 424
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=4.1e-10 Score=102.33 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALELID---------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~---------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.++++|||+++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999998764 779999999975
No 425
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=6.1e-10 Score=93.60 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=64.7
Q ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCeEEEEecCC
Q psy8397 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tvi~~tH~~ 114 (203)
++++..++..+..++..+++|+|++|+ ..+.+++.+|+++|||||++|+|+.....+ +..++.+.+.|.++|++||+.
T Consensus 73 d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 73 NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 345566666666778888999999975 566678899999999999999999876665 457888888899999999996
Q ss_pred C
Q psy8397 115 S 115 (203)
Q Consensus 115 ~ 115 (203)
+
T Consensus 152 ~ 152 (204)
T cd03282 152 D 152 (204)
T ss_pred H
Confidence 5
No 426
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.96 E-value=1.2e-09 Score=113.37 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=57.5
Q ss_pred cccccCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 47 SKHTLCGRLSGGQKKRLS----IALE--------LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~----iA~a--------L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..+++++.|||||||+++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++|+|||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 345567899999999996 5655 55899999999999999999999999999888 78999999986
Q ss_pred C
Q psy8397 115 S 115 (203)
Q Consensus 115 ~ 115 (203)
.
T Consensus 1317 W 1317 (1353)
T TIGR02680 1317 W 1317 (1353)
T ss_pred h
Confidence 4
No 427
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.93 E-value=4.2e-09 Score=105.36 Aligned_cols=64 Identities=33% Similarity=0.480 Sum_probs=56.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 50 TLCGRLSGGQKKRLSIALELI------DN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~------~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
+++++||||++-.++||.+|+ .+ -++|||||||..||+.....+.+.|..+...|.+|++|||+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ 882 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV 882 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence 688899999999887776654 45 69999999999999999999999999999778888888887
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.92 E-value=1.2e-08 Score=84.97 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 107 (203)
.+.+.+.+...++... .||||||..++||.-|+ .++++++||||.++||...+..+.++|+++.+ +.-+
T Consensus 120 ~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE
T ss_pred cccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3455667777666543 89999999999997653 47889999999999999999999999998763 3556
Q ss_pred EEEecC
Q psy8397 108 VCTIHQ 113 (203)
Q Consensus 108 i~~tH~ 113 (203)
|++||+
T Consensus 193 ii~Th~ 198 (220)
T PF02463_consen 193 IITTHN 198 (220)
T ss_dssp EEE-S-
T ss_pred cccccc
Confidence 666665
No 429
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.88 E-value=6.3e-09 Score=83.64 Aligned_cols=66 Identities=27% Similarity=0.451 Sum_probs=55.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+...+|.|++|.+.++..+...+ .++++|||-++|.|..++.+++.|+.....+.-||+|||.+.
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 345678999999999998888776 899999999999999999999999887767899999999864
No 430
>KOG0060|consensus
Probab=98.86 E-value=8.2e-09 Score=98.12 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 32 IGLVDDILDTIGLVLSKHTL-----------CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~-----------v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
.+++.+.|+.++|.+...+- ...||+||+||+++||-+.++|++-||||-|+++|......+++.++++
T Consensus 537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 34566677777665543322 2259999999999999999999999999999999999988888877654
Q ss_pred HhCCCeEEEEecCC
Q psy8397 101 ARGGRTIVCTIHQP 114 (203)
Q Consensus 101 ~~~g~tvi~~tH~~ 114 (203)
|.|.|=++|..
T Consensus 617 ---giT~iSVgHRk 627 (659)
T KOG0060|consen 617 ---GITFISVGHRK 627 (659)
T ss_pred ---CCeEEEeccHH
Confidence 56666666663
No 431
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=94.70 Aligned_cols=82 Identities=29% Similarity=0.424 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEE
Q psy8397 34 LVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCT 110 (203)
Q Consensus 34 ~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~ 110 (203)
.+.++|...|+.+ +.-++.++||-|||.|+.||.+++..|.+++.||-.+.||+.++.++..-|.+++++ |.|++++
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3567899999975 346778899999999999999999999999999999999999999999999999975 8888888
Q ss_pred ecCCC
Q psy8397 111 IHQPS 115 (203)
Q Consensus 111 tH~~~ 115 (203)
||.++
T Consensus 565 ThrpE 569 (593)
T COG2401 565 THRPE 569 (593)
T ss_pred ecCHH
Confidence 88764
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.83 E-value=1.6e-08 Score=81.54 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=61.9
Q ss_pred HcCCcccccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 41 TIGLVLSKHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLD---SNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 41 ~~~L~~~~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD---~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
..|.....+.++..+|+|++| ......+...+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS 137 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 344445667788899999998 5555555678999999999999999 8888888899999988899999999
Q ss_pred cCCC
Q psy8397 112 HQPS 115 (203)
Q Consensus 112 H~~~ 115 (203)
|...
T Consensus 138 ~~~~ 141 (187)
T cd01124 138 EQSG 141 (187)
T ss_pred cccc
Confidence 9854
No 433
>PRK14079 recF recombination protein F; Provisional
Probab=98.82 E-value=1.2e-08 Score=92.22 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 54 RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
-+|+||++++.+|..|+ .+|++++||||+++||+..+..+++.|...
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 48999999999999999 899999999999999999999999887653
No 434
>KOG0063|consensus
Probab=98.80 E-value=1e-08 Score=94.95 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+...++++.+.|....++-+..||||+-||.+||.+.+++.++.++|||.+-||...+..-...|+.+.....-||++.|
T Consensus 192 ~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH 271 (592)
T KOG0063|consen 192 DNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH 271 (592)
T ss_pred ccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence 34567788888999999999999999999999999999999999999999999999999999999999877778888888
Q ss_pred CCC
Q psy8397 113 QPS 115 (203)
Q Consensus 113 ~~~ 115 (203)
|++
T Consensus 272 DLs 274 (592)
T KOG0063|consen 272 DLS 274 (592)
T ss_pred ech
Confidence 875
No 435
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.76 E-value=1e-08 Score=86.66 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=42.4
Q ss_pred CCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 54 RLSGGQKKR----LSIALEL--IDNPPIMFLDEP---TTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 54 ~LSgGqrqr----l~iA~aL--~~~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
++|.|+.+. ..++.++ +.+|+++||||| |+++|..+. ...+++.+.+. +.|+|++||+.
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~ 153 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH 153 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH
Confidence 577776553 3455555 469999999999 888887552 34456666665 78888889884
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.76 E-value=1.4e-08 Score=100.45 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=58.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~ 115 (203)
.....+++|+||++++.|++++ .+|+++|||||++|+||.....+.. ++..+...|.++|++||+.+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 3445667999999999999988 8999999999999999999998864 67778778999999999964
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.72 E-value=4e-08 Score=82.07 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=44.7
Q ss_pred HHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCc
Q psy8397 61 KRLSIALELID--NPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 61 qrl~iA~aL~~--~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
+|+.-+...+. +|+++|+|||++|+|+..+..+. ..++.+.+.|.|+|++||+++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 34433333444 99999999999999999998775 5788888779999999999764
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.70 E-value=1.8e-08 Score=99.53 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=59.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCeEEEEecCCC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.....++++|+||+++..+++.+ .+|+++|||||++|+||.....+ +.++..+.+.|.++|++||+.+
T Consensus 378 si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 378 SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 34455678999999999998876 79999999999999999999999 5688888888999999999964
No 439
>KOG0063|consensus
Probab=98.69 E-value=2.2e-08 Score=92.88 Aligned_cols=91 Identities=24% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy8397 23 ISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94 (203)
Q Consensus 23 ~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~ 94 (203)
-||..++.. .+.+.++++-+.+++..++.+.+||||+.||+++|.+|-..+++++.|||.+-||..++..--
T Consensus 417 ~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~As 496 (592)
T KOG0063|consen 417 GTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIAS 496 (592)
T ss_pred chHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHH
Confidence 466665543 234677888888999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH-hCCCeEEEEecC
Q psy8397 95 AMLKALA-RGGRTIVCTIHQ 113 (203)
Q Consensus 95 ~~l~~l~-~~g~tvi~~tH~ 113 (203)
..+++.. +.++|-.++.||
T Consensus 497 kvikRfilhakktafvVEhd 516 (592)
T KOG0063|consen 497 KVIKRFILHAKKTAFVVEHD 516 (592)
T ss_pred HHHHHHHHhccchhhhhhhH
Confidence 8888864 335566666665
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.63 E-value=7.7e-08 Score=81.18 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCeEEEEecCCCc
Q psy8397 57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG---GRTIVCTIHQPSA 116 (203)
Q Consensus 57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~---g~tvi~~tH~~~~ 116 (203)
.-+.||++++++++.+|+++|||||++|+|+.....+ ...++.+.+. +.++|++||+++.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 4467999999999999999999999999999865554 5788888764 3589999999753
No 441
>KOG0064|consensus
Probab=98.57 E-value=6.5e-08 Score=91.59 Aligned_cols=93 Identities=25% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCHhHHHhH---HHHHHHHHHHcCCcccccccCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy8397 22 RISVDDILDT---IGLVDDILDTIGLVLSKHTLCG---------RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89 (203)
Q Consensus 22 ~~~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~---------~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~ 89 (203)
+.|+++..+. .+....+|+.+.|.....+-.+ -||||+|||+++||.+-|+|+..+|||-|++..+..
T Consensus 568 PdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 568 PDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred CCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 3566655432 3455666777766655444432 599999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397 90 TNQCVAMLKALARGGRTIVCTIHQPSAT 117 (203)
Q Consensus 90 ~~~i~~~l~~l~~~g~tvi~~tH~~~~~ 117 (203)
...+++..+. -|.+++-+||.|+.|
T Consensus 648 E~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 648 EGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred HHHHHHHHHh---cCceEEEeecCccHH
Confidence 7777765543 389999999999865
No 442
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.55 E-value=1.5e-07 Score=69.42 Aligned_cols=52 Identities=31% Similarity=0.569 Sum_probs=39.7
Q ss_pred ccccCCCCCHHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397 48 KHTLCGRLSGGQKK-RLSIALE------LID------NPPIMFLDEPTTGLDSNSTNQCVAMLKA 99 (203)
Q Consensus 48 ~~~~v~~LSgGqrq-rl~iA~a------L~~------~P~vLlLDEPt~gLD~~~~~~i~~~l~~ 99 (203)
..+..+.+|||||| .+.+|.+ +.. .|++++||||+++||+..+..+++++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35678899999994 4444332 333 3789999999999999999999998874
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.45 E-value=5.7e-07 Score=74.67 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy8397 53 GRLSGG--QKKRLSIALELIDNPPIMFLDEPT-----TGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 53 ~~LSgG--qrqrl~iA~aL~~~P~vLlLDEPt-----~gLD~~~~~~i~~~l~~l~~ 102 (203)
+..||+ +++++.||++++.+|+++++|||| +|||+..+..+.+.+++++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 344444 899999999999999999999999 99999999999999999873
No 444
>PRK13695 putative NTPase; Provisional
Probab=98.38 E-value=8.8e-07 Score=71.65 Aligned_cols=82 Identities=10% Similarity=0.185 Sum_probs=61.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccc
Q psy8397 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP--TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLG 126 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEP--t~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~ 126 (203)
.++...+||+++-+..+++..+.+|+++++||| +.++|+ .+.+.+..+.+.|.++|+++|+-
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~------------ 136 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR------------ 136 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch------------
Confidence 344567999999999999999999999999995 445553 35566666655567777777762
Q ss_pred cCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee
Q psy8397 127 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK 178 (203)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~ 178 (203)
.+..++|++..+.+|++..-
T Consensus 137 --------------------------------~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 --------------------------------SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred --------------------------------hhHHHHHHHhccCCcEEEEE
Confidence 24577889999999987654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.29 E-value=8.1e-07 Score=88.38 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=60.4
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++... .
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~-------------------------~---- 700 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE-------------------------R---- 700 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-------------------------c----
Confidence 5799999999999999 799999999999999888999999999976421 0
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
......+.+.|+..+++.+|++...|.
T Consensus 701 -----s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 701 -----SGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred -----CchHHHHHhcCCeEEECCCccccccch
Confidence 001123567789888888888765543
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.19 E-value=5.7e-06 Score=72.61 Aligned_cols=87 Identities=21% Similarity=0.260 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHH
Q psy8397 60 KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAML 139 (203)
Q Consensus 60 rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (203)
|.....+.+++++|+++++|||++ ...+..+++.+. .|.|+|+|||+.+. .+.++|- .+
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH~~~~--~~~~~r~------------~~ 240 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAHGRDV--EDLYKRP------------VF 240 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEechhHH--HHHHhCh------------HH
Confidence 343445555668999999999974 333455555554 69999999998542 1111110 00
Q ss_pred HHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 140 KALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 140 ~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+.+ .-..+++|+++|++|+ ..|+++++.
T Consensus 241 ~~l----------------~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 241 KEL----------------IENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHH----------------HhcCceEEEEEEecCC--CCCceeecc
Confidence 000 0136799999999887 677776653
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.06 E-value=1e-05 Score=68.82 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCeEEEEecCCC
Q psy8397 59 QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 59 qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~-g~tvi~~tH~~~ 115 (203)
+-++++-....+.+|+++|||||.+|+++.....+... ++.+.+. +.++|++||+++
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 45555555555689999999999999999999998876 7778776 999999999975
No 448
>PF13175 AAA_15: AAA ATPase domain
Probab=97.96 E-value=2.2e-05 Score=70.22 Aligned_cols=66 Identities=23% Similarity=0.429 Sum_probs=56.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397 49 HTLCGRLSGGQKKRLSIALELI------DN-PP---IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQP 114 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~------~~-P~---vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~ 114 (203)
..+...+|.|.++.+.|+..+. .+ +. ++++|||-+.|.|..++.+++.|.++.. .+..||+|||-|
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp 412 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSP 412 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCCh
Confidence 4567789999999888877653 12 22 9999999999999999999999999987 588999999986
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.94 E-value=1.2e-05 Score=68.37 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCC------CCCH
Q psy8397 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL----------------ELIDNPPIMFLDEPTT------GLDS 87 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~----------------aL~~~P~vLlLDEPt~------gLD~ 87 (203)
...+|+..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++ .+|+
T Consensus 55 ~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~ 131 (239)
T cd01125 55 EIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDN 131 (239)
T ss_pred HHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCH
Confidence 356678888888876554444432 256767666554 345799999999 765 4799
Q ss_pred HHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 88 NSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 88 ~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
.....+++.|++++++ |.|||+++|..
T Consensus 132 ~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 132 GAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 9999999999998765 99999999986
No 450
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.93 E-value=4.5e-06 Score=72.42 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCeEEEEecCCCchhhhhhhc
Q psy8397 54 RLSGGQ--------KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ-CVAMLKALARGGRTIVCTIHQPSATIFEMVDH 124 (203)
Q Consensus 54 ~LSgGq--------rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~-i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~ 124 (203)
.+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.||.+.
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--------- 195 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--------- 195 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh---------
Confidence 579999 9999999999899999999 999999654443 44 5555545677788888753
Q ss_pred cccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397 125 LGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV 176 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~ 176 (203)
....+|.|.+++.|.+.
T Consensus 196 -----------------------------------~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 196 -----------------------------------ERRIFPAIDILKSGTRK 212 (249)
T ss_pred -----------------------------------hCCCCCeEEEcCCCCcc
Confidence 35688999999999874
No 451
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.88 E-value=4.4e-05 Score=65.15 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397 59 QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 59 qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
+-+++.-...-+.+|+++|||||.+|.|+.....+ +..++.+.+. +.++|++||+++
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 45555555556679999999999999998777774 5688888876 899999999975
No 452
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.75 E-value=6.4e-05 Score=73.01 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=46.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397 51 LCGRLSGGQKKRLSIALELID------NPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~~------~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~ 115 (203)
++..|||||||-++||-.++. +.++ ++|||++.||+..+..+.+ .+..+ +.-||+.||+-+
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e 615 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEE 615 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHh
Confidence 466899999999876654432 3555 5699999999999999875 55543 567888889843
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.74 E-value=8.4e-05 Score=63.38 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 54 RLSGGQKKRLSIALELI----DNPPIMFLDEPTTGL----DSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gL----D~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+..++.+++.++.+++.|.|+++++|.
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 36777655544444333 369999999999999 8888899999999998888877665543
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.70 E-value=0.00027 Score=59.70 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALELID--NPPIMFLDEPTTG---LDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~--~P~vLlLDEPt~g---LD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
..|.++++.+.....++. +|+++++||||+. .|......+++.++.+++.|.|+++++|...
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 457889999999999987 9999999999964 4555555666667777777999999999854
No 455
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.57 E-value=0.00012 Score=73.39 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=48.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397 65 IALELIDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117 (203)
Q Consensus 65 iA~aL~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~ 117 (203)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 577888999999999999999 79999999999999988899999999998754
No 456
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.46 E-value=0.00026 Score=59.92 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=54.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+.....|.||-=.--+.+.+ ++--+.|||||-++|.|.-+..++..|+.+++.|.-+||.||-|-
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 344456799996554444443 566899999999999999999999999999999999999999974
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.37 E-value=0.00092 Score=51.34 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTT----------GLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~----------gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
...+.+..++...+.+...+|+++++|||++ +.+......+.+++....+.+.|+|+++|...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 3456667777888999999999999999994 45555566666666666666999999999875
No 458
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.00035 Score=72.10 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=56.8
Q ss_pred cCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 51 LCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+..||||||-..+||.-++ ...|+.+|||-=++||..+...+.++|+++. .+.-.|+|||...
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~ 1130 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG 1130 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH
Confidence 34469999999999998765 4678999999999999999999999999988 7889999999963
No 459
>KOG0964|consensus
Probab=97.35 E-value=9.7e-05 Score=73.89 Aligned_cols=62 Identities=27% Similarity=0.458 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 52 CGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.+||||||--|+||..++. .++++||||--++||+.++..+.++|++|... .-.|+||-.|
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp 1160 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP 1160 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH
Confidence 34799999999999988764 46899999999999999999999999999854 5666666665
No 460
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.31 E-value=0.00065 Score=61.33 Aligned_cols=61 Identities=28% Similarity=0.565 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALELID--NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~--~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.||-|+.+-+++|.+|.. .|.+++||||-++|-|..-..+...+++.++.+ -|+++||-..
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 799999999999999985 688999999999999999999999999877666 8999999753
No 461
>PF13166 AAA_13: AAA domain
Probab=97.16 E-value=0.0016 Score=63.32 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEEecCCC
Q psy8397 52 CGRLSGGQKKRLSIALEL--ID-------NPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIHQPS 115 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL--~~-------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tvi~~tH~~~ 115 (203)
...||-|||.-++||-=| +. +..++++|-|-|.||...+..+...|+++. ...+-||+-||++.
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~ 572 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLY 572 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHH
Confidence 457999999999998633 33 678999999999999999999999999986 56789999999975
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.12 E-value=0.0013 Score=61.60 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHH-----HHh-cCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CC
Q psy8397 53 GRLSGGQKKRLSIAL-----ELI-DNPP-IMFLD-----------------EP--TTGLDSNSTNQCVAMLKALAR--GG 104 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~-----aL~-~~P~-vLlLD-----------------EP--t~gLD~~~~~~i~~~l~~l~~--~g 104 (203)
.+=|-++|-+...+. -+. ..-+ +|++| || |+|+||.....+.+++.++.. +|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 355667776654332 222 2223 56778 76 679999999999999999873 45
Q ss_pred C-----eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397 105 R-----TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG 179 (203)
Q Consensus 105 ~-----tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g 179 (203)
. ||++.+|+++ ..+||++.++.+|+++.++
T Consensus 302 sIT~~~TVlv~~hdm~---------------------------------------------e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 302 SITAFYTVLVDGDDMN---------------------------------------------EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CeeeEEEEEEECCCCC---------------------------------------------chhhhhEEEecCEEEEEec
Confidence 4 6666666653 2679999999999999999
Q ss_pred Cccc
Q psy8397 180 SSAN 183 (203)
Q Consensus 180 ~~~~ 183 (203)
+.++
T Consensus 337 ~la~ 340 (438)
T PRK07721 337 QLAN 340 (438)
T ss_pred cHHH
Confidence 8764
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.91 E-value=8.2e-05 Score=70.01 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=52.9
Q ss_pred HHHcCCcccccccCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIA--LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA--~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
++.+++....++....+|+|++|||.|+ .++...|+.. +..++.++++++.+++.|+|+|+|+|+++
T Consensus 100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 3445666666777788999999999999 5666665433 56788899999999888999999999975
No 464
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0054 Score=58.92 Aligned_cols=60 Identities=28% Similarity=0.541 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHH--HhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 54 RLSGGQKKRLSIALE--LIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 54 ~LSgGqrqrl~iA~a--L~~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
-.||||--|++||-- +... .+.|++||-=+|+.-.....+-+.|++|.+ ..-|+||||.|
T Consensus 431 vASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlP 494 (557)
T COG0497 431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLP 494 (557)
T ss_pred hcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHH
Confidence 479999999999874 3333 569999999999999999999999999863 33444444443
No 465
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.78 E-value=0.0021 Score=64.08 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=43.0
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 69 LIDNPPIMFLDEPTTGLD-SNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||.+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 456899999999999999 778888999999998889999999999864
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.62 E-value=0.0017 Score=57.60 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.-.++.+|-++|+++++|||.+ .+.++.++.+...+.+++.|+|..+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS 254 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 3456778999999999999996 4567777777644456789999876
No 467
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.50 E-value=0.0011 Score=54.18 Aligned_cols=83 Identities=10% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc-hhhhhhhccccCCCchhHH
Q psy8397 57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA-TIFEMVDHLGLDSNSTNQC 135 (203)
Q Consensus 57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~-~~~~~~~~~~~~~~~~~~~ 135 (203)
.|+-+|..||..+..+|+.+..+| +.+||..++.+.+.+.+...+|.+||+.+|.+.+ .+.+.|+.+.+...+....
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~ 137 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQ 137 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHH
Confidence 378899999999999999988776 8899999999999999887667899999999854 4678899998888888877
Q ss_pred HHHHHH
Q psy8397 136 VAMLKA 141 (203)
Q Consensus 136 ~~~~~~ 141 (203)
.+.+..
T Consensus 138 ~~Rl~~ 143 (188)
T TIGR00152 138 LERLMQ 143 (188)
T ss_pred HHHHHH
Confidence 777754
No 468
>KOG0962|consensus
Probab=96.48 E-value=0.0052 Score=63.61 Aligned_cols=61 Identities=34% Similarity=0.478 Sum_probs=51.1
Q ss_pred CCCCHHHH------HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----hC-CCeEEEEecC
Q psy8397 53 GRLSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA----RG-GRTIVCTIHQ 113 (203)
Q Consensus 53 ~~LSgGqr------qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~----~~-g~tvi~~tH~ 113 (203)
|..|-||| =|+++|-.+..+..+|=|||||++||-.....+...+.... ++ ..-.|++|||
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 35799997 48889999999999999999999999999888877665543 22 6789999999
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=96.46 E-value=0.0091 Score=60.15 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 52 CGRLSGGQKKRLSIALELID--NPPIMFLDEP---TTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~--~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
...+|-=|.....++..|-. +++++||||| |+.+|. ....+.+++.+.+. |.++|++||+.+
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~e 731 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYHE 731 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechHH
Confidence 34577777888888887765 9999999999 888884 34567788888776 689999999943
No 470
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.43 E-value=0.0054 Score=61.09 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLD-SNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
.+..+|.++++|||..+|| +..+..+.+.++.+++.|..++++||.++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4567999999999999999 888889999999998889999999999864
No 471
>KOG0933|consensus
Probab=96.32 E-value=0.0021 Score=64.79 Aligned_cols=60 Identities=27% Similarity=0.351 Sum_probs=49.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 51 LCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
...+||||||-.|+|+..|++ .++++||||--++||....+.+-.+|+.-- .+.-.|+||
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVS 1142 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVS 1142 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEE
Confidence 345799999999998877664 678999999999999999999999998744 245566665
No 472
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.97 E-value=0.0073 Score=56.52 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=71.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 50 TLCGRLSGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~-------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
....+.|.|+|+|+..+.+.+ .++-++++|+||.+.|+. +++...+.+.-..|.+..+.||- . +++
T Consensus 217 ~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ 289 (432)
T PRK06793 217 VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLL 289 (432)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHH
Confidence 345688999999999999888 789999999999999985 66666666666568888888883 2 233
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEee----cCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTI----HQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~----h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
+|.+.. .....|.+-+. .|++ .-++|.+.-+-+|+|+.+-.
T Consensus 290 ERag~~--------------~~GSiT~~~tvlv~~dD~~---dpI~d~~~si~DG~ivLsr~ 334 (432)
T PRK06793 290 ERSGKT--------------QKGSITGIYTVLVDGDDLN---GPVPDLARGILDGHIVLKRE 334 (432)
T ss_pred HHhccC--------------CCcceEEEEEEEecCCCCC---CcchHHhhhhcceEEEEcHH
Confidence 333221 11223333222 2322 23566777777888876543
No 473
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.017 Score=52.00 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=48.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc---hhhhhhhccccCCCchhHHHHHH
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA---TIFEMVDHLGLDSNSTNQCVAML 139 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 139 (203)
+++|||+.+||+.++..+++.|.+.. .+.++|++||+++. .+..+|-.+-+..-+..++.+.+
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYL 181 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHH
Confidence 55789999999999999999999975 57899999999764 33555666766555555555555
No 474
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.052 Score=49.83 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 54 RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
-+|-||++-+.+|.-|+ .+++||+||+-++-||..-+..+++. .+ .+.-+++|+=+
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~ 339 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTD 339 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccC
Confidence 48999999999887665 47899999999999999999998887 32 23445555443
No 475
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.066 Score=51.70 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=56.1
Q ss_pred cccCCC-CCHHHHHHHHHHHHHh---cCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 49 HTLCGR-LSGGQKKRLSIALELI---DNP-----PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 49 ~~~v~~-LSgGqrqrl~iA~aL~---~~P-----~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
+..+++ ||-|++.-++++--|+ -+| +++++|.|.+.+|....-..+..+++...+++-||+-||+
T Consensus 523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn 596 (758)
T COG4694 523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN 596 (758)
T ss_pred CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence 444555 9999999998775544 355 4899999999999999999999999999999999999999
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.01 E-value=0.063 Score=44.50 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397 64 SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~ 127 (203)
.++++|..+|+++++|||. |+.... ..+ +.+..|.+++.|+|..+. .+.++|+..
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l-~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~ 120 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR---LAL-TAAETGHLVMSTLHTNSA--AKTIDRIID 120 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH---HHH-HHHHcCCEEEEEecCCcH--HHHHhHHHh
Confidence 5788999999999999996 554322 223 345679999999999874 355666643
No 477
>KOG0996|consensus
Probab=94.56 E-value=0.034 Score=57.22 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=45.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 49 HTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
-+.+.+||||+|-.-+||..++. ..+++++||--++||....--+...|++..
T Consensus 1190 WK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT 1246 (1293)
T KOG0996|consen 1190 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT 1246 (1293)
T ss_pred hhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc
Confidence 34567899999999999998874 568999999999999999999999998754
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.51 E-value=0.43 Score=34.49 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=49.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCeEEEEecC
Q psy8397 51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA------MLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~------~l~~l~~~g~tvi~~tH~ 113 (203)
.....++++..+..++++--..|.++++||+..-.+......... ........+..+|+++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 344578888899999998888899999999999999888776654 223333457899999984
No 479
>KOG0018|consensus
Probab=94.41 E-value=0.043 Score=55.98 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=50.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+.+++..||||+|--.+||.-++. .+++.+|||--++||.....++...|+ ..+.-.|++|
T Consensus 1045 RFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvIS 1109 (1141)
T KOG0018|consen 1045 RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVIS 1109 (1141)
T ss_pred ccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEe
Confidence 455667899999999999988774 468999999999999999999999999 4455455554
No 480
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.41 E-value=0.22 Score=42.67 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALAR-GGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~-~g~tvi~~tH~~~ 115 (203)
.+|.=+.-...++..+ +.+-.++|+||+..|=++.....+.. +++.+.+ .+..++++||+.+
T Consensus 102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 4665444444444444 56777999999999999999888765 6677887 4899999999975
No 481
>PF13514 AAA_27: AAA domain
Probab=94.00 E-value=0.12 Score=53.52 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=47.6
Q ss_pred cCCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 51 LCGRLSGGQKK------RLSIALEL-IDNPPI-MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 51 ~v~~LSgGqrq------rl~iA~aL-~~~P~v-LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+..||+|.+= |++++..+ -.++++ +|+|+++.+.|..-...++++|.++.+++.-|++|-|.
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~ 1092 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHE 1092 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccH
Confidence 34579999985 55555566 334554 99999999999999999999999998765455555444
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.93 E-value=0.14 Score=42.76 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=34.7
Q ss_pred cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 71 DNPPIMFLDE-----PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 71 ~~P~vLlLDE-----Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.+++.+++|- |+.+.|...+..+.++++.+++.|.|+++++|.-
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~ 154 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD 154 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 4689999993 3345566677888889999988899999999963
No 483
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=93.78 E-value=0.19 Score=47.23 Aligned_cols=94 Identities=15% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
.+=||-.-|=..|..||=...++||+||=|++--.--+...++.|-.-.++..|
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPIT-------------------------- 374 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPIT-------------------------- 374 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcc--------------------------
Confidence 457999999999999999999999999999876554443333322211111111
Q ss_pred hHHHHHHHHh-hhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 133 NQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 133 ~~~~~~~~~~-~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
-....++.+ ++.|.+.|+++.=.. ..+..+|+|++|++=+
T Consensus 375 -Pfidrvr~l~~~~GvStIlV~Ggsg-dy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 375 -PFIDRVRSLYEKLGVSTILVVGGSG-DYFDVADRVIMMDEYR 415 (448)
T ss_pred -hHHHHHHHHHHHcCceEEEEeccch-hhHhhCCEEEEecCcc
Confidence 122334444 566776666665544 4688999999999855
No 484
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.52 E-value=0.15 Score=41.49 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397 60 KKRLSIALELI--DNPPIMFLDEPTTG--LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125 (203)
Q Consensus 60 rqrl~iA~aL~--~~P~vLlLDEPt~g--LD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~ 125 (203)
++-+..|+..+ .+.++++|||-... ++......+.++|+. +.++..||+|.+++.+++.+++|-+
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCcee
Confidence 34455566666 45799999999865 566667788888775 4458899999999999888877665
No 485
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.14 E-value=0.23 Score=44.77 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~ 125 (203)
-+++++|-++|+++++||+. |+.+....++ .+..|.+++.|.|-.+. ...++|+
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl 239 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERI 239 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHH
Confidence 34778899999999999997 8777654333 35679999999999764 2445555
No 486
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.05 E-value=0.24 Score=46.27 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=35.8
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCeEEEEe-cCCC
Q psy8397 71 DNPPIMFLDEPTTGLDSN-STNQCVAMLKALARGGRTIVCTI-HQPS 115 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~-~~~~i~~~l~~l~~~g~tvi~~t-H~~~ 115 (203)
.+|++|++|||...++.. ....++..+..+...|+.+|++| |.|.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~ 239 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH
Confidence 379999999999988765 45678899999888787787776 5543
No 487
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.95 E-value=0.35 Score=38.63 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHcCCc-ccccccCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 35 VDDILDTIGLV-LSKHTLCGRLSGGQKKRLS--IALELID-NPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 35 v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~--iA~aL~~-~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
+.++++..++. -..-.++..+|+|+++++. +++.+-. +++++ |+|++|......+++.|.++.+
T Consensus 127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 44556666654 3445677789999999877 5555543 34443 9999999999999999988764
No 488
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=92.43 E-value=0.69 Score=43.65 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=64.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC
Q psy8397 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD 128 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~ 128 (203)
+.-.+.=||-+.+-..|=+++=...+.||+||-+++...-.+. ++.+..+.-+|+.
T Consensus 315 ~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd----Vlake~eG~rtl~-------------------- 370 (554)
T COG3044 315 DFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD----VLAKESEGERTLT-------------------- 370 (554)
T ss_pred ccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh----HHHHHhcCcccch--------------------
Confidence 3334568999999999999999999999999999876554333 2222221112221
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV 176 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~ 176 (203)
.+.+++......+.++|.++.-.. .....+||+++|.+-+-.
T Consensus 371 -----pl~dei~s~~gd~iS~iaVtggld-dlla~aDRaIvMeDhrpk 412 (554)
T COG3044 371 -----PLVDEIGSLRGDLISTIAVTGGLD-DLLAVADRAIVMEDHRPK 412 (554)
T ss_pred -----HHHHhhhhhccCceEEEEEeccch-hhhhhcceEEEecccCcc
Confidence 223333333344466666666655 367899999999986643
No 489
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=91.51 E-value=0.57 Score=47.39 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q psy8397 55 LSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALAR-GGRTIVCTIHQPS 115 (203)
Q Consensus 55 LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~-~g~tvi~~tH~~~ 115 (203)
+|-=+--...+|..| +.++.++|+||+-.|-|+.....+.. ++..+.+ .|..++++||+.+
T Consensus 652 ~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~e 716 (840)
T TIGR01070 652 RSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFE 716 (840)
T ss_pred cchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchH
Confidence 454444445555544 47899999999977777777766444 5566666 5889999999964
No 490
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.46 E-value=0.15 Score=54.37 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 52 CGRLSGGQKKRLSIALELI--------D--------NP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~--------~--------~P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
.+.||||||..+..+.-++ . -| ++|||||. +++|..++..+++.++.+ |.-+|++|
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~t 1435 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAA 1435 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEec
Confidence 4679999998877666554 1 12 45699999 999999999999988743 55566555
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.81 E-value=0.4 Score=39.96 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.9
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHH-HHHHHHHhCCCeEEEEecCC
Q psy8397 72 NPPIMFLDEPTTGL--DSNSTNQCV-AMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 72 ~P~vLlLDEPt~gL--D~~~~~~i~-~~l~~l~~~g~tvi~~tH~~ 114 (203)
+|+.+++|-++.-+ ++...+.+. .+.+.+++.|.|+|+++|..
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 56777777776532 333334443 34444556699999999964
No 492
>PRK13764 ATPase; Provisional
Probab=89.93 E-value=1.2 Score=43.54 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
+|..+|+++++||.-..-+ ++++..++..|..++-|-|=-+ ...+...+..+
T Consensus 320 lLR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~s----------------a~~Ai~Rl~~~----- 371 (602)
T PRK13764 320 LLLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATR----------------PIDAIQRFIGR----- 371 (602)
T ss_pred HHhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCC----------------HHHHHHHHHhh-----
Confidence 4789999999999975332 5555566666888999999543 12222222111
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeE--EeeCCccc
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHC--VYKGSSAN 183 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i--~~~g~~~~ 183 (203)
|++. .+...+|+++.+.+|++ +++++...
T Consensus 372 ------v~lg-~i~~iID~IV~I~~G~I~~v~~~~~~~ 402 (602)
T PRK13764 372 ------VELG-MIPQIVDTVIFIEDGEVSKVYDLEFTV 402 (602)
T ss_pred ------hhhc-hHHHhhcEEEEEeCCEEEEEEeeeeEE
Confidence 1222 46789999999999998 77776443
No 493
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=89.82 E-value=0.54 Score=45.88 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA 99 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~ 99 (203)
.+.+.++.+|+....+..+..+||| +||||| +..||+..+..+.+.+++
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 4556678889988888889999999 999999 799999999999998875
No 494
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=0.59 Score=42.17 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 63 LSIALELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 63 l~iA~aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
+.+++ ++.+|+ ++|..+|-+.|-|+.+-.+.++|.+++..|+-||+.||-
T Consensus 251 i~L~l-li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHS 301 (374)
T COG4938 251 IGLML-LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHS 301 (374)
T ss_pred HHHHe-eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEech
Confidence 34444 445555 778999999999999999999999999999999999995
No 495
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.55 E-value=1.3 Score=36.78 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 60 KKRLSIALELI--DNPPIMFLDEPTTGLD--SNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 60 rqrl~iA~aL~--~~P~vLlLDEPt~gLD--~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
++-+..|+..+ .+.++++|||-...++ .....++.++|+. +..+..||+|-+++.
T Consensus 101 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~-rp~~~evILTGR~~p 159 (178)
T PRK07414 101 QELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence 44556676666 4579999999987543 4455667776664 223455555555543
No 496
>PRK06893 DNA replication initiation factor; Validated
Probab=89.39 E-value=0.78 Score=38.78 Aligned_cols=45 Identities=9% Similarity=0.222 Sum_probs=34.7
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 70 IDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.++++|++||..... +......++..+.....+|.++|++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3578999999998754 66666788999998887788876666553
No 497
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.28 E-value=0.82 Score=38.42 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhc--CCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397 60 KKRLSIALELID--NPPIMFLDEPTTGLD--SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125 (203)
Q Consensus 60 rqrl~iA~aL~~--~P~vLlLDEPt~gLD--~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~ 125 (203)
++-+..|+..+. +.++++|||-...++ .....++.++|+. +..+..||+|-++...++.+++|-+
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCchh
Confidence 445677777774 568999999987654 4556778888864 4568899999999998888877655
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.90 E-value=1.7 Score=40.27 Aligned_cols=52 Identities=19% Similarity=0.382 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 64 SIALELIDNPPIMFLDE----------PTTGLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDE----------Pt~gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
.+..|....|.|+|+|| +.+|.|....+.+.+++..+.. .+..||++||.++
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 34556668999999999 4567787777778888877642 3678999999875
No 499
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.08 E-value=1.3 Score=32.35 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q psy8397 61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-----GGRTIVCTIHQPS 115 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-----~g~tvi~~tH~~~ 115 (203)
+..........++.++++||.-.. ++.....+...+..... .+.++|++++...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 445556677789999999998765 56667778888877653 5789999998753
No 500
>PRK04296 thymidine kinase; Provisional
Probab=87.99 E-value=2.7 Score=34.52 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=31.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
-.+++++++||- .-|+. ..+.++++.++..|.+||++.++.+
T Consensus 76 ~~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcc
Confidence 347899999999 22443 3366777777888999999999843
Done!